Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72674.t1 | XP_003612404.1 | 97.1 | 420 | 12 | 0 | 1 | 420 | 1 | 420 | 2.50E-214 | 754.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72674.t1 | Q9FKY4 | 55.7 | 424 | 155 | 3 | 1 | 420 | 1 | 395 | 2.7e-129 | 463.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72674.t1 | G7K1C3 | 97.1 | 420 | 12 | 0 | 1 | 420 | 1 | 420 | 1.8e-214 | 754.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99561 | MS.gene72674 | PPI |
| MS.gene72674 | MS.gene86525 | PPI |
| MS.gene72674 | MS.gene64908 | PPI |
| MS.gene72674 | MS.gene65344 | PPI |
| MS.gene72674 | MS.gene066493 | PPI |
| MS.gene72674 | MS.gene64907 | PPI |
| MS.gene72674 | MS.gene23822 | PPI |
| MS.gene72674 | MS.gene69976 | PPI |
| MS.gene72674 | MS.gene72672 | PPI |
| MS.gene72674 | MS.gene64906 | PPI |
| MS.gene72674 | MS.gene72673 | PPI |
| MS.gene72674 | MS.gene86523 | PPI |
| MS.gene72674 | MS.gene99561 | PPI |
| MS.gene72674 | MS.gene86524 | PPI |
| MS.gene72674 | MS.gene82524 | PPI |
| MS.gene64906 | MS.gene72674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72674.t1 | MTR_5g024660 | 97.857 | 420 | 9 | 0 | 1 | 420 | 1 | 420 | 0.0 | 830 |
| MS.gene72674.t1 | MTR_5g024640 | 90.261 | 421 | 41 | 0 | 1 | 421 | 1 | 421 | 0.0 | 776 |
| MS.gene72674.t1 | MTR_5g024640 | 89.211 | 380 | 41 | 0 | 1 | 380 | 1 | 380 | 0.0 | 694 |
| MS.gene72674.t1 | MTR_5g024520 | 80.285 | 421 | 17 | 2 | 1 | 421 | 1 | 355 | 0.0 | 644 |
| MS.gene72674.t1 | MTR_5g024640 | 88.333 | 300 | 35 | 0 | 1 | 300 | 1 | 300 | 0.0 | 548 |
| MS.gene72674.t1 | MTR_8g073160 | 62.381 | 420 | 117 | 4 | 1 | 420 | 1 | 379 | 0.0 | 520 |
| MS.gene72674.t1 | MTR_5g024560 | 83.571 | 280 | 43 | 1 | 142 | 421 | 24 | 300 | 2.40e-169 | 476 |
| MS.gene72674.t1 | MTR_5g024970 | 42.529 | 435 | 217 | 6 | 1 | 420 | 1 | 417 | 7.54e-125 | 368 |
| MS.gene72674.t1 | MTR_5g024970 | 40.260 | 462 | 216 | 7 | 1 | 420 | 1 | 444 | 2.03e-119 | 355 |
| MS.gene72674.t1 | MTR_8g072560 | 41.784 | 426 | 218 | 6 | 1 | 419 | 1 | 403 | 6.52e-117 | 347 |
| MS.gene72674.t1 | MTR_5g024970 | 42.818 | 362 | 175 | 5 | 74 | 420 | 9 | 353 | 3.29e-104 | 313 |
| MS.gene72674.t1 | MTR_5g024970 | 40.657 | 396 | 202 | 6 | 1 | 381 | 1 | 378 | 8.63e-104 | 313 |
| MS.gene72674.t1 | MTR_8g006780 | 42.654 | 422 | 226 | 5 | 1 | 419 | 1 | 409 | 6.90e-103 | 311 |
| MS.gene72674.t1 | MTR_5g024580 | 88.554 | 166 | 19 | 0 | 1 | 166 | 1 | 166 | 1.92e-102 | 301 |
| MS.gene72674.t1 | MTR_8g006775 | 36.364 | 429 | 249 | 9 | 1 | 419 | 1 | 415 | 5.01e-91 | 281 |
| MS.gene72674.t1 | MTR_5g024970 | 39.640 | 333 | 168 | 6 | 1 | 318 | 1 | 315 | 2.17e-80 | 251 |
| MS.gene72674.t1 | MTR_5g024970 | 39.048 | 315 | 159 | 6 | 1 | 300 | 1 | 297 | 2.39e-73 | 233 |
| MS.gene72674.t1 | MTR_5g024970 | 37.546 | 269 | 154 | 3 | 1 | 268 | 1 | 256 | 4.89e-61 | 199 |
| MS.gene72674.t1 | MTR_5g024970 | 37.546 | 269 | 154 | 3 | 1 | 268 | 1 | 256 | 1.11e-60 | 198 |
| MS.gene72674.t1 | MTR_7g074190 | 31.490 | 416 | 262 | 6 | 7 | 419 | 26 | 421 | 1.57e-57 | 194 |
| MS.gene72674.t1 | MTR_5g054950 | 28.571 | 441 | 284 | 8 | 7 | 421 | 17 | 452 | 9.14e-57 | 193 |
| MS.gene72674.t1 | MTR_1g108390 | 27.069 | 447 | 288 | 9 | 7 | 421 | 19 | 459 | 2.64e-52 | 182 |
| MS.gene72674.t1 | MTR_8g006780 | 49.359 | 156 | 79 | 0 | 1 | 156 | 1 | 156 | 6.62e-50 | 172 |
| MS.gene72674.t1 | MTR_8g006780 | 45.946 | 185 | 95 | 2 | 237 | 419 | 158 | 339 | 3.70e-32 | 125 |
| MS.gene72674.t1 | MTR_5g024530 | 88.571 | 70 | 8 | 0 | 1 | 70 | 1 | 70 | 9.14e-36 | 129 |
| MS.gene72674.t1 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 317 | 420 | 51 | 154 | 1.41e-32 | 120 |
| MS.gene72674.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 1.07e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72674.t1 | AT5G65980 | 55.714 | 420 | 161 | 2 | 1 | 420 | 1 | 395 | 1.46e-169 | 481 |
| MS.gene72674.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 5.40e-161 | 459 |
| MS.gene72674.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 5.40e-161 | 459 |
| MS.gene72674.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 5.40e-161 | 459 |
| MS.gene72674.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 5.40e-161 | 459 |
| MS.gene72674.t1 | AT5G65980 | 54.331 | 381 | 149 | 2 | 1 | 381 | 1 | 356 | 2.25e-148 | 426 |
| MS.gene72674.t1 | AT1G76520 | 39.387 | 424 | 217 | 7 | 3 | 420 | 1 | 390 | 3.46e-110 | 330 |
| MS.gene72674.t1 | AT1G76520 | 39.387 | 424 | 217 | 7 | 3 | 420 | 1 | 390 | 3.46e-110 | 330 |
| MS.gene72674.t1 | AT1G20925 | 38.480 | 421 | 221 | 6 | 1 | 420 | 89 | 472 | 6.69e-106 | 321 |
| MS.gene72674.t1 | AT1G76530 | 39.211 | 431 | 235 | 8 | 1 | 420 | 1 | 415 | 3.79e-95 | 292 |
| MS.gene72674.t1 | AT1G76530 | 39.211 | 431 | 235 | 8 | 1 | 420 | 1 | 415 | 3.79e-95 | 292 |
| MS.gene72674.t1 | AT5G01990 | 32.512 | 406 | 262 | 7 | 7 | 411 | 28 | 422 | 2.82e-65 | 215 |
| MS.gene72674.t1 | AT1G71090 | 27.896 | 423 | 279 | 7 | 12 | 411 | 21 | 440 | 1.16e-54 | 188 |
| MS.gene72674.t1 | AT1G76530 | 45.238 | 168 | 89 | 2 | 1 | 168 | 1 | 165 | 2.46e-45 | 160 |
Find 82 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGATCATTGAAATTTA+AGG | 0.144664 | 5.4:-15847155 | MS.gene72674:CDS |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.4:-15847682 | MS.gene72674:CDS |
| CTTGGTCAACATTTCTCTTA+TGG | 0.228788 | 5.4:-15845855 | MS.gene72674:CDS |
| GAGCATTATCACCAATTATT+AGG | 0.231554 | 5.4:+15846517 | None:intergenic |
| TTGAATCTGTTACCTTGTTC+AGG | 0.261383 | 5.4:+15848170 | None:intergenic |
| TTCAGGGATTTCCTAAAATC+TGG | 0.277999 | 5.4:+15848187 | None:intergenic |
| CCTTTCTCATTACATATTGC+AGG | 0.286843 | 5.4:+15847442 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.4:+15847622 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.4:-15848250 | MS.gene72674:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.4:-15848239 | MS.gene72674:CDS |
| CAAGACACTCTTGAATTACT+TGG | 0.332662 | 5.4:-15846480 | MS.gene72674:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.4:+15847691 | None:intergenic |
| AGCTTGGTGGTATCTTCATA+TGG | 0.376262 | 5.4:-15847201 | MS.gene72674:CDS |
| TTTCCATCAAGATCTTTGTT+TGG | 0.380708 | 5.4:+15847103 | None:intergenic |
| CTCGTATGCGTCTTTCTCTA+TGG | 0.381654 | 5.4:-15847377 | MS.gene72674:CDS |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.4:+15846157 | None:intergenic |
| GTGAAAACCGCGGCGAGTTT+CGG | 0.382303 | 5.4:-15846238 | MS.gene72674:CDS |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.4:+15848262 | None:intergenic |
| ACAATAAACAAGCCAATAAC+AGG | 0.384460 | 5.4:+15846259 | None:intergenic |
| TGGTTAAGGAACCTAATAAT+TGG | 0.386910 | 5.4:-15846528 | MS.gene72674:CDS |
| TCGGCGCGGTTGCATGGTTA+AGG | 0.387370 | 5.4:-15846542 | MS.gene72674:CDS |
| ATTATTGCTTCATGTTCATC+AGG | 0.388417 | 5.4:-15847598 | MS.gene72674:intron |
| AAACTAACTGTTGCAATTGC+TGG | 0.391515 | 5.4:+15846670 | None:intergenic |
| TATATATTATGCAGGTACTA+TGG | 0.394662 | 5.4:-15845959 | MS.gene72674:intron |
| ACCTAGCAAAAGGGTGATGC+AGG | 0.412797 | 5.4:+15846366 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.4:+15847415 | None:intergenic |
| TCCTCTTCGGCGCGGTTGCA+TGG | 0.431756 | 5.4:-15846548 | MS.gene72674:CDS |
| CAGCCATAGCTCTCACTGCT+TGG | 0.432625 | 5.4:-15845873 | MS.gene72674:CDS |
| TCTTATAGTTTGATAAGTAT+AGG | 0.432637 | 5.4:+15847177 | None:intergenic |
| TTGCTTCATTTCTAGCTTGG+TGG | 0.435651 | 5.4:-15847214 | MS.gene72674:intron |
| CTTTAATTAATCAGGAAACA+TGG | 0.436248 | 5.4:-15847488 | MS.gene72674:intron |
| GCACCAAACAAAGATCTTGA+TGG | 0.446090 | 5.4:-15847106 | MS.gene72674:CDS |
| TGCAGATACTCCCCTTCTAA+AGG | 0.449404 | 5.4:-15847080 | MS.gene72674:CDS |
| AATGAGAAAGGAGGTCCATT+TGG | 0.452048 | 5.4:-15847430 | MS.gene72674:CDS |
| TGAGGTTACCACCTAGCAAA+AGG | 0.453284 | 5.4:+15846356 | None:intergenic |
| ACCAGAGTGTACTGAAACAA+TGG | 0.454657 | 5.4:+15846199 | None:intergenic |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.4:-15848251 | MS.gene72674:CDS |
| TACTGAAACAATGGATCCAC+TGG | 0.463953 | 5.4:+15846208 | None:intergenic |
| TGAATCTGTTACCTTGTTCA+GGG | 0.463963 | 5.4:+15848171 | None:intergenic |
| TCAGGGATTTCCTAAAATCT+GGG | 0.471146 | 5.4:+15848188 | None:intergenic |
| GCAGATACTCCCCTTCTAAA+GGG | 0.471997 | 5.4:-15847079 | MS.gene72674:CDS |
| ATTGCAGGGATGATTACAAT+TGG | 0.480547 | 5.4:+15847457 | None:intergenic |
| CACTTGAAGATATGATATCA+TGG | 0.485558 | 5.4:-15847839 | MS.gene72674:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.4:-15847679 | MS.gene72674:CDS |
| TTTAATTAATCAGGAAACAT+GGG | 0.512740 | 5.4:-15847487 | MS.gene72674:intron |
| CAAGTAATTCAAGAGTGTCT+TGG | 0.514562 | 5.4:+15846481 | None:intergenic |
| CTAGGTGGTAACCTCACTGC+AGG | 0.516204 | 5.4:-15846349 | MS.gene72674:CDS |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.4:-15847678 | MS.gene72674:CDS |
| CTTTCTCATTACATATTGCA+GGG | 0.518940 | 5.4:+15847443 | None:intergenic |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.4:+15847672 | None:intergenic |
| ATGGCTCAGTTGTTTGATGT+AGG | 0.522905 | 5.4:-15845940 | MS.gene72674:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.4:-15847700 | MS.gene72674:CDS |
| TCAGTCAATTGTATTGAAGA+AGG | 0.530132 | 5.4:-15846761 | MS.gene72674:CDS |
| ATTGAAATTTAAGGCACTTG+AGG | 0.531428 | 5.4:-15847146 | MS.gene72674:CDS |
| CCTGCAATATGTAATGAGAA+AGG | 0.540032 | 5.4:-15847442 | MS.gene72674:CDS |
| ACCATGCAACCGCGCCGAAG+AGG | 0.548813 | 5.4:+15846547 | None:intergenic |
| ACTGAGGCCTAATTTGAAAG+TGG | 0.556128 | 5.4:-15847629 | MS.gene72674:CDS |
| ATGATGCTGATCAGTGTCAA+TGG | 0.556763 | 5.4:+15846304 | None:intergenic |
| AAGACACTCTTGAATTACTT+GGG | 0.561735 | 5.4:-15846479 | MS.gene72674:intron |
| AGTGTTCAGTTATTCTGTTG+TGG | 0.570064 | 5.4:-15845909 | MS.gene72674:CDS |
| GAGGTTACCACCTAGCAAAA+GGG | 0.572920 | 5.4:+15846357 | None:intergenic |
| GTGTCTTGGATAACACTGAA+TGG | 0.577387 | 5.4:+15846495 | None:intergenic |
| TGAGGCTGCTGAGATTCTAA+AGG | 0.581898 | 5.4:-15847128 | MS.gene72674:CDS |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.586714 | 5.4:-15847625 | MS.gene72674:CDS |
| TCCATTGTTTCAGTACACTC+TGG | 0.591585 | 5.4:-15846200 | MS.gene72674:CDS |
| AAACTTGCAAACACAAGTGA+AGG | 0.598059 | 5.4:+15847876 | None:intergenic |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.4:+15846160 | None:intergenic |
| CAGGGATTTCCTAAAATCTG+GGG | 0.609176 | 5.4:+15848189 | None:intergenic |
| CCTAGCAAAAGGGTGATGCA+GGG | 0.642605 | 5.4:+15846367 | None:intergenic |
| GAGTCTTCAATATAACTCGA+TGG | 0.644317 | 5.4:+15847022 | None:intergenic |
| TGATCAGCATCATTATAACT+CGG | 0.644729 | 5.4:-15846294 | MS.gene72674:CDS |
| GAGTTTCGGCATTCTCCCAG+TGG | 0.672011 | 5.4:-15846224 | MS.gene72674:CDS |
| GCAATATGTAATGAGAAAGG+AGG | 0.679242 | 5.4:-15847439 | MS.gene72674:CDS |
| CTAACTGTTGCAATTGCTGG+TGG | 0.683218 | 5.4:+15846673 | None:intergenic |
| CTTGTTTATTGTGAAAACCG+CGG | 0.687149 | 5.4:-15846248 | MS.gene72674:CDS |
| TGACCAAGCAGTGAGAGCTA+TGG | 0.689222 | 5.4:+15845870 | None:intergenic |
| ACTGAAACAATGGATCCACT+GGG | 0.696241 | 5.4:+15846209 | None:intergenic |
| GGATATTAGTAAAATTACTG+AGG | 0.706826 | 5.4:-15847645 | MS.gene72674:CDS |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.4:+15846338 | None:intergenic |
| TTTCGGTTTCCTCTTCGGCG+CGG | 0.730222 | 5.4:-15846556 | MS.gene72674:CDS |
| CATACGAGAGTGCATTACTG+TGG | 0.731337 | 5.4:+15847392 | None:intergenic |
| GAGAATGCCGAAACTCGCCG+CGG | 0.782084 | 5.4:+15846231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAATCAATTTAAATATT+AGG | - | chr5.4:15846004-15846023 | MS.gene72674:intron | 10.0% |
| !!! | TATCATTAAATTTTTAAGTT+AGG | + | chr5.4:15848161-15848180 | None:intergenic | 10.0% |
| !! | AATAGATCATAATTTAATGT+TGG | - | chr5.4:15846395-15846414 | MS.gene72674:intron | 15.0% |
| !! | GAATTATTCTTTAATTAATC+AGG | - | chr5.4:15846642-15846661 | MS.gene72674:intron | 15.0% |
| !! | TTTAAACTATAAATACGAAT+AGG | + | chr5.4:15846804-15846823 | None:intergenic | 15.0% |
| !! | TTTAATGATATATATTATGC+AGG | - | chr5.4:15848171-15848190 | MS.gene72674:intron | 15.0% |
| !!! | AAACATTTTTAATGATCTTA+CGG | - | chr5.4:15846827-15846846 | MS.gene72674:intron | 15.0% |
| !!! | TATTTTGTATTTATGATTGA+AGG | + | chr5.4:15847691-15847710 | None:intergenic | 15.0% |
| !! | CTAACATAACAACTAATATA+CGG | + | chr5.4:15847210-15847229 | None:intergenic | 20.0% |
| !! | TCTTATAGTTTGATAAGTAT+AGG | + | chr5.4:15846964-15846983 | None:intergenic | 20.0% |
| !! | TGGTTATGTTAATTTAATAC+AGG | - | chr5.4:15846415-15846434 | MS.gene72674:intron | 20.0% |
| !! | TTATGTTAATTTAATACAGG+TGG | - | chr5.4:15846418-15846437 | MS.gene72674:intron | 20.0% |
| !! | TTTAATTAATCAGGAAACAT+GGG | - | chr5.4:15846651-15846670 | MS.gene72674:intron | 20.0% |
| !!! | TAGTATTTTCTCATTTATCA+GGG | - | chr5.4:15847227-15847246 | MS.gene72674:intron | 20.0% |
| !!! | TGTTGTTTTAATTGAAGTAA+CGG | - | chr5.4:15848023-15848042 | MS.gene72674:intron | 20.0% |
| !!! | TTAGTATTTTCTCATTTATC+AGG | - | chr5.4:15847226-15847245 | MS.gene72674:intron | 20.0% |
| ! | AAGCAAAATGTTTAAATGTG+AGG | + | chr5.4:15846910-15846929 | None:intergenic | 25.0% |
| ! | AAGCAGATCATTGAAATTTA+AGG | - | chr5.4:15846983-15847002 | MS.gene72674:intron | 25.0% |
| ! | ATTAAAACAACATACATGCA+TGG | + | chr5.4:15848015-15848034 | None:intergenic | 25.0% |
| ! | CTTTAATTAATCAGGAAACA+TGG | - | chr5.4:15846650-15846669 | MS.gene72674:intron | 25.0% |
| ! | GGATATTAGTAAAATTACTG+AGG | - | chr5.4:15846493-15846512 | MS.gene72674:CDS | 25.0% |
| ! | GTAAAAATTCTTTACACTGA+CGG | - | chr5.4:15846868-15846887 | MS.gene72674:intron | 25.0% |
| ! | GTGAAGAACAAATATTTATC+AGG | - | chr5.4:15846061-15846080 | MS.gene72674:intron | 25.0% |
| ! | TATATATTATGCAGGTACTA+TGG | - | chr5.4:15848179-15848198 | MS.gene72674:intron | 25.0% |
| !! | ATATTCCATGATCAGTTTTT+CGG | - | chr5.4:15847565-15847584 | MS.gene72674:intron | 25.0% |
| !! | ATTCCTGAAAAGAATTGTTT+TGG | + | chr5.4:15847742-15847761 | None:intergenic | 25.0% |
| !! | TAACCAAAACAATTCTTTTC+AGG | - | chr5.4:15847736-15847755 | MS.gene72674:intron | 25.0% |
| !! | TCATCTGAAATAAGAGTTAA+AGG | + | chr5.4:15847275-15847294 | None:intergenic | 25.0% |
| !!! | AAAACAATTCTTTTCAGGAA+TGG | - | chr5.4:15847741-15847760 | MS.gene72674:intron | 25.0% |
| !!! | AGCAATTAACTTTGATTTGA+TGG | + | chr5.4:15846583-15846602 | None:intergenic | 25.0% |
| !!! | TGAATAGTGACTTTTTGTTT+TGG | - | chr5.4:15846194-15846213 | MS.gene72674:CDS | 25.0% |
| !!! | TTCTTGTTTTCTTGTTTTGT+AGG | - | chr5.4:15846219-15846238 | MS.gene72674:CDS | 25.0% |
| AAGACACTCTTGAATTACTT+GGG | - | chr5.4:15847659-15847678 | MS.gene72674:CDS | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.4:15845879-15845898 | None:intergenic | 30.0% | |
| ACAATAAACAAGCCAATAAC+AGG | + | chr5.4:15847882-15847901 | None:intergenic | 30.0% | |
| ATAAGAGTTAAAGGAGTTGA+AGG | + | chr5.4:15847266-15847285 | None:intergenic | 30.0% | |
| ATTATTGCTTCATGTTCATC+AGG | - | chr5.4:15846540-15846559 | MS.gene72674:CDS | 30.0% | |
| ATTTATCAGGGTTTGAATTC+AGG | - | chr5.4:15847239-15847258 | MS.gene72674:intron | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.4:15847984-15848003 | None:intergenic | 30.0% | |
| CACTTGAAGATATGATATCA+TGG | - | chr5.4:15846299-15846318 | MS.gene72674:CDS | 30.0% | |
| CTTTCTCATTACATATTGCA+GGG | + | chr5.4:15846698-15846717 | None:intergenic | 30.0% | |
| GAAAAAAAGTAGACACTTGA+AGG | + | chr5.4:15847716-15847735 | None:intergenic | 30.0% | |
| GAAAAACTGATCATGGAATA+TGG | + | chr5.4:15847566-15847585 | None:intergenic | 30.0% | |
| GAGCATTATCACCAATTATT+AGG | + | chr5.4:15847624-15847643 | None:intergenic | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.4:15846469-15846488 | None:intergenic | 30.0% | |
| TAGACATAATCTAGATCAAG+AGG | + | chr5.4:15847161-15847180 | None:intergenic | 30.0% | |
| TCAGTCAATTGTATTGAAGA+AGG | - | chr5.4:15847377-15847396 | MS.gene72674:CDS | 30.0% | |
| TGATCAGCATCATTATAACT+CGG | - | chr5.4:15847844-15847863 | MS.gene72674:CDS | 30.0% | |
| TGGTTAAGGAACCTAATAAT+TGG | - | chr5.4:15847610-15847629 | MS.gene72674:CDS | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.4:15847981-15848000 | None:intergenic | 30.0% | |
| TTTCCATCAAGATCTTTGTT+TGG | + | chr5.4:15847038-15847057 | None:intergenic | 30.0% | |
| ! | ATTGAAATTTAAGGCACTTG+AGG | - | chr5.4:15846992-15847011 | MS.gene72674:intron | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.4:15846468-15846487 | MS.gene72674:intron | 30.0% |
| !!! | ATCGTTTTTTCCCTTTAGAA+GGG | + | chr5.4:15847072-15847091 | None:intergenic | 30.0% |
| !!! | ATTTTGCTTCATTTCTAGCT+TGG | - | chr5.4:15846921-15846940 | MS.gene72674:intron | 30.0% |
| AAACTAACTGTTGCAATTGC+TGG | + | chr5.4:15847471-15847490 | None:intergenic | 35.0% | |
| AAACTGATCATGGAATATGG+AGG | + | chr5.4:15847563-15847582 | None:intergenic | 35.0% | |
| AAACTTGCAAACACAAGTGA+AGG | + | chr5.4:15846265-15846284 | None:intergenic | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.4:15846519-15846538 | None:intergenic | 35.0% | |
| AGTGTTCAGTTATTCTGTTG+TGG | - | chr5.4:15848229-15848248 | MS.gene72674:CDS | 35.0% | |
| ATTGCAGGGATGATTACAAT+TGG | + | chr5.4:15846684-15846703 | None:intergenic | 35.0% | |
| CAAGACACTCTTGAATTACT+TGG | - | chr5.4:15847658-15847677 | MS.gene72674:CDS | 35.0% | |
| CCTGCAATATGTAATGAGAA+AGG | - | chr5.4:15846696-15846715 | MS.gene72674:CDS | 35.0% | |
| CCTTTCTCATTACATATTGC+AGG | + | chr5.4:15846699-15846718 | None:intergenic | 35.0% | |
| CTTGGTCAACATTTCTCTTA+TGG | - | chr5.4:15848283-15848302 | MS.gene72674:CDS | 35.0% | |
| CTTGTTTATTGTGAAAACCG+CGG | - | chr5.4:15847890-15847909 | MS.gene72674:CDS | 35.0% | |
| GAGTCTTCAATATAACTCGA+TGG | + | chr5.4:15847119-15847138 | None:intergenic | 35.0% | |
| GCAATATGTAATGAGAAAGG+AGG | - | chr5.4:15846699-15846718 | MS.gene72674:CDS | 35.0% | |
| TCAGGGATTTCCTAAAATCT+GGG | + | chr5.4:15845953-15845972 | None:intergenic | 35.0% | |
| TGAATCTGTTACCTTGTTCA+GGG | + | chr5.4:15845970-15845989 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.4:15846438-15846457 | MS.gene72674:intron | 35.0% | |
| TTCAGGGATTTCCTAAAATC+TGG | + | chr5.4:15845954-15845973 | None:intergenic | 35.0% | |
| TTGAATCTGTTACCTTGTTC+AGG | + | chr5.4:15845971-15845990 | None:intergenic | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.4:15845887-15845906 | MS.gene72674:CDS | 35.0% |
| ! | ATCTTCTTTCCCCAGATTTT+AGG | - | chr5.4:15845940-15845959 | MS.gene72674:CDS | 35.0% |
| ! | GAGTTAGTTTCTGAGAGTAA+TGG | + | chr5.4:15846345-15846364 | None:intergenic | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.4:15845888-15845907 | MS.gene72674:CDS | 35.0% |
| !! | CAAGTAATTCAAGAGTGTCT+TGG | + | chr5.4:15847660-15847679 | None:intergenic | 35.0% |
| !! | CCATTGATTTGAGATTTGAC+GGG | - | chr5.4:15846115-15846134 | MS.gene72674:intron | 35.0% |
| !! | GCCATTGATTTGAGATTTGA+CGG | - | chr5.4:15846114-15846133 | MS.gene72674:intron | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.4:15846472-15846491 | MS.gene72674:intron | 35.0% |
| !! | TTTTAGGAAATCCCTGAACA+AGG | - | chr5.4:15845956-15845975 | MS.gene72674:intron | 35.0% |
| !! | TTTTGTGCAACTTTTGGAAG+TGG | - | chr5.4:15845845-15845864 | MS.gene72674:CDS | 35.0% |
| !!! | CATCGTTTTTTCCCTTTAGA+AGG | + | chr5.4:15847073-15847092 | None:intergenic | 35.0% |
| !!! | TCGTTTTTTCCCTTTAGAAG+GGG | + | chr5.4:15847071-15847090 | None:intergenic | 35.0% |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.4:15846450-15846469 | None:intergenic | 40.0% | |
| AATGAGAAAGGAGGTCCATT+TGG | - | chr5.4:15846708-15846727 | MS.gene72674:CDS | 40.0% | |
| AATTCCACACAGTAAACGTG+TGG | + | chr5.4:15846158-15846177 | None:intergenic | 40.0% | |
| ACCAGAGTGTACTGAAACAA+TGG | + | chr5.4:15847942-15847961 | None:intergenic | 40.0% | |
| ACTGAAACAATGGATCCACT+GGG | + | chr5.4:15847932-15847951 | None:intergenic | 40.0% | |
| ACTGAGGCCTAATTTGAAAG+TGG | - | chr5.4:15846509-15846528 | MS.gene72674:CDS | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.4:15846513-15846532 | MS.gene72674:CDS | 40.0% | |
| ATGATGCTGATCAGTGTCAA+TGG | + | chr5.4:15847837-15847856 | None:intergenic | 40.0% | |
| ATGGCTCAGTTGTTTGATGT+AGG | - | chr5.4:15848198-15848217 | MS.gene72674:CDS | 40.0% | |
| CAGGGATTTCCTAAAATCTG+GGG | + | chr5.4:15845952-15845971 | None:intergenic | 40.0% | |
| CCCGTCAAATCTCAAATCAA+TGG | + | chr5.4:15846118-15846137 | None:intergenic | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.4:15846460-15846479 | MS.gene72674:intron | 40.0% | |
| GCACCAAACAAAGATCTTGA+TGG | - | chr5.4:15847032-15847051 | MS.gene72674:CDS | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.4:15847573-15847592 | None:intergenic | 40.0% | |
| GTGTCTTGGATAACACTGAA+TGG | + | chr5.4:15847646-15847665 | None:intergenic | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.4:15846456-15846475 | MS.gene72674:intron | 40.0% | |
| TACTGAAACAATGGATCCAC+TGG | + | chr5.4:15847933-15847952 | None:intergenic | 40.0% | |
| TCCATTGTTTCAGTACACTC+TGG | - | chr5.4:15847938-15847957 | MS.gene72674:intron | 40.0% | |
| ! | AGCTTGGTGGTATCTTCATA+TGG | - | chr5.4:15846937-15846956 | MS.gene72674:intron | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.4:15847867-15847886 | MS.gene72674:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+CGG | - | chr5.4:15847577-15847596 | MS.gene72674:intron | 40.0% |
| !! | TTGCTTCATTTCTAGCTTGG+TGG | - | chr5.4:15846924-15846943 | MS.gene72674:intron | 40.0% |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.4:15847803-15847822 | None:intergenic | 45.0% | |
| CGTCTTTCTCTATGGCAGTA+AGG | - | chr5.4:15846769-15846788 | MS.gene72674:CDS | 45.0% | |
| CTAACTGTTGCAATTGCTGG+TGG | + | chr5.4:15847468-15847487 | None:intergenic | 45.0% | |
| CTCGTATGCGTCTTTCTCTA+TGG | - | chr5.4:15846761-15846780 | MS.gene72674:CDS | 45.0% | |
| GAGGTTACCACCTAGCAAAA+GGG | + | chr5.4:15847784-15847803 | None:intergenic | 45.0% | |
| GCAGATACTCCCCTTCTAAA+GGG | - | chr5.4:15847059-15847078 | MS.gene72674:CDS | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.4:15846459-15846478 | MS.gene72674:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.4:15845899-15845918 | MS.gene72674:CDS | 45.0% | |
| TGAGGCTGCTGAGATTCTAA+AGG | - | chr5.4:15847010-15847029 | MS.gene72674:CDS | 45.0% | |
| TGAGGTTACCACCTAGCAAA+AGG | + | chr5.4:15847785-15847804 | None:intergenic | 45.0% | |
| TGCAGATACTCCCCTTCTAA+AGG | - | chr5.4:15847058-15847077 | MS.gene72674:CDS | 45.0% | |
| ! | CATACGAGAGTGCATTACTG+TGG | + | chr5.4:15846749-15846768 | None:intergenic | 45.0% |
| ACCTAGCAAAAGGGTGATGC+AGG | + | chr5.4:15847775-15847794 | None:intergenic | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.4:15846726-15846745 | None:intergenic | 50.0% | |
| CCTAGCAAAAGGGTGATGCA+GGG | + | chr5.4:15847774-15847793 | None:intergenic | 50.0% | |
| TGACCAAGCAGTGAGAGCTA+TGG | + | chr5.4:15848271-15848290 | None:intergenic | 50.0% | |
| TGTGCCACACGTTTACTGTG+TGG | - | chr5.4:15846151-15846170 | MS.gene72674:intron | 50.0% | |
| ! | TGCATCACCCTTTTGCTAGG+TGG | - | chr5.4:15847774-15847793 | MS.gene72674:intron | 50.0% |
| CAGCCATAGCTCTCACTGCT+TGG | - | chr5.4:15848265-15848284 | MS.gene72674:CDS | 55.0% | |
| CTAGGTGGTAACCTCACTGC+AGG | - | chr5.4:15847789-15847808 | MS.gene72674:intron | 55.0% | |
| GAGTTTCGGCATTCTCCCAG+TGG | - | chr5.4:15847914-15847933 | MS.gene72674:intron | 55.0% | |
| GTGAAAACCGCGGCGAGTTT+CGG | - | chr5.4:15847900-15847919 | MS.gene72674:CDS | 55.0% | |
| TTTCGGTTTCCTCTTCGGCG+CGG | - | chr5.4:15847582-15847601 | MS.gene72674:intron | 55.0% | |
| ! | CCCTGCATCACCCTTTTGCT+AGG | - | chr5.4:15847771-15847790 | MS.gene72674:intron | 55.0% |
| GAGAATGCCGAAACTCGCCG+CGG | + | chr5.4:15847910-15847929 | None:intergenic | 60.0% | |
| TCGGCGCGGTTGCATGGTTA+AGG | - | chr5.4:15847596-15847615 | MS.gene72674:intron | 60.0% | |
| ACCATGCAACCGCGCCGAAG+AGG | + | chr5.4:15847594-15847613 | None:intergenic | 65.0% | |
| TCCTCTTCGGCGCGGTTGCA+TGG | - | chr5.4:15847590-15847609 | MS.gene72674:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15845840 | 15848320 | 15845840 | ID=MS.gene72674 |
| chr5.4 | mRNA | 15845840 | 15848320 | 15845840 | ID=MS.gene72674.t1;Parent=MS.gene72674 |
| chr5.4 | exon | 15848183 | 15848320 | 15848183 | ID=MS.gene72674.t1.exon1;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15848183 | 15848320 | 15848183 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15847840 | 15847919 | 15847840 | ID=MS.gene72674.t1.exon2;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15847840 | 15847919 | 15847840 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15847599 | 15847723 | 15847599 | ID=MS.gene72674.t1.exon3;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15847599 | 15847723 | 15847599 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15847375 | 15847496 | 15847375 | ID=MS.gene72674.t1.exon4;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15847375 | 15847496 | 15847375 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15847009 | 15847221 | 15847009 | ID=MS.gene72674.t1.exon5;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15847009 | 15847221 | 15847009 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15846678 | 15846797 | 15846678 | ID=MS.gene72674.t1.exon6;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15846678 | 15846797 | 15846678 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15846480 | 15846580 | 15846480 | ID=MS.gene72674.t1.exon7;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15846480 | 15846580 | 15846480 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15846164 | 15846402 | 15846164 | ID=MS.gene72674.t1.exon8;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15846164 | 15846402 | 15846164 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| chr5.4 | exon | 15845840 | 15845967 | 15845840 | ID=MS.gene72674.t1.exon9;Parent=MS.gene72674.t1 |
| chr5.4 | CDS | 15845840 | 15845967 | 15845840 | ID=cds.MS.gene72674.t1;Parent=MS.gene72674.t1 |
| Gene Sequence |
| Protein sequence |
