Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86523.t1 | XP_003612404.1 | 95.5 | 420 | 19 | 0 | 1 | 420 | 1 | 420 | 1.00E-207 | 732.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86523.t1 | Q9FKY4 | 54.7 | 424 | 159 | 3 | 1 | 420 | 1 | 395 | 3.3e-127 | 456.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86523.t1 | G7K1C3 | 95.5 | 420 | 19 | 0 | 1 | 420 | 1 | 420 | 7.2e-208 | 732.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99561 | MS.gene86523 | PPI |
| MS.gene64907 | MS.gene86523 | PPI |
| MS.gene72672 | MS.gene86523 | PPI |
| MS.gene86523 | MS.gene64908 | PPI |
| MS.gene82524 | MS.gene86523 | PPI |
| MS.gene69976 | MS.gene86523 | PPI |
| MS.gene86523 | MS.gene23822 | PPI |
| MS.gene86523 | MS.gene86525 | PPI |
| MS.gene65344 | MS.gene86523 | PPI |
| MS.gene86523 | MS.gene72672 | PPI |
| MS.gene86523 | MS.gene066493 | PPI |
| MS.gene86523 | MS.gene72673 | PPI |
| MS.gene72674 | MS.gene86523 | PPI |
| MS.gene86523 | MS.gene86524 | PPI |
| MS.gene64906 | MS.gene86523 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86523.t1 | MTR_5g024660 | 97.381 | 420 | 11 | 0 | 1 | 420 | 1 | 420 | 0.0 | 823 |
| MS.gene86523.t1 | MTR_5g024640 | 91.211 | 421 | 37 | 0 | 1 | 421 | 1 | 421 | 0.0 | 783 |
| MS.gene86523.t1 | MTR_5g024640 | 90.263 | 380 | 37 | 0 | 1 | 380 | 1 | 380 | 0.0 | 701 |
| MS.gene86523.t1 | MTR_5g024520 | 80.048 | 421 | 18 | 2 | 1 | 421 | 1 | 355 | 0.0 | 640 |
| MS.gene86523.t1 | MTR_5g024640 | 89.333 | 300 | 32 | 0 | 1 | 300 | 1 | 300 | 0.0 | 553 |
| MS.gene86523.t1 | MTR_8g073160 | 62.381 | 420 | 117 | 4 | 1 | 420 | 1 | 379 | 0.0 | 523 |
| MS.gene86523.t1 | MTR_5g024560 | 87.218 | 266 | 34 | 0 | 156 | 421 | 35 | 300 | 6.90e-170 | 478 |
| MS.gene86523.t1 | MTR_5g024970 | 41.958 | 429 | 228 | 4 | 1 | 420 | 1 | 417 | 4.29e-124 | 366 |
| MS.gene86523.t1 | MTR_5g024970 | 39.693 | 456 | 227 | 5 | 1 | 420 | 1 | 444 | 1.23e-118 | 353 |
| MS.gene86523.t1 | MTR_8g072560 | 41.080 | 426 | 221 | 6 | 1 | 419 | 1 | 403 | 1.13e-114 | 341 |
| MS.gene86523.t1 | MTR_5g024970 | 42.135 | 356 | 186 | 3 | 74 | 420 | 9 | 353 | 2.55e-103 | 310 |
| MS.gene86523.t1 | MTR_5g024970 | 40.000 | 390 | 213 | 4 | 1 | 381 | 1 | 378 | 4.58e-103 | 311 |
| MS.gene86523.t1 | MTR_8g006780 | 41.805 | 421 | 231 | 4 | 1 | 419 | 1 | 409 | 2.71e-101 | 307 |
| MS.gene86523.t1 | MTR_5g024580 | 92.308 | 156 | 12 | 0 | 1 | 156 | 1 | 156 | 1.35e-100 | 297 |
| MS.gene86523.t1 | MTR_8g006775 | 35.981 | 428 | 252 | 8 | 1 | 419 | 1 | 415 | 7.63e-91 | 281 |
| MS.gene86523.t1 | MTR_5g024970 | 38.838 | 327 | 179 | 4 | 1 | 318 | 1 | 315 | 2.25e-79 | 248 |
| MS.gene86523.t1 | MTR_5g024970 | 38.188 | 309 | 170 | 4 | 1 | 300 | 1 | 297 | 2.82e-72 | 230 |
| MS.gene86523.t1 | MTR_5g024970 | 37.313 | 268 | 156 | 3 | 1 | 268 | 1 | 256 | 2.38e-60 | 197 |
| MS.gene86523.t1 | MTR_5g024970 | 37.313 | 268 | 156 | 3 | 1 | 268 | 1 | 256 | 5.12e-60 | 196 |
| MS.gene86523.t1 | MTR_7g074190 | 31.731 | 416 | 261 | 6 | 7 | 419 | 26 | 421 | 3.48e-58 | 196 |
| MS.gene86523.t1 | MTR_5g054950 | 28.571 | 441 | 284 | 8 | 7 | 421 | 17 | 452 | 5.24e-58 | 197 |
| MS.gene86523.t1 | MTR_1g108390 | 26.846 | 447 | 289 | 7 | 7 | 421 | 19 | 459 | 4.18e-52 | 181 |
| MS.gene86523.t1 | MTR_8g006780 | 48.718 | 156 | 80 | 0 | 1 | 156 | 1 | 156 | 1.02e-48 | 169 |
| MS.gene86523.t1 | MTR_8g006780 | 45.946 | 185 | 95 | 2 | 237 | 419 | 158 | 339 | 2.06e-32 | 125 |
| MS.gene86523.t1 | MTR_5g024530 | 88.571 | 70 | 8 | 0 | 1 | 70 | 1 | 70 | 9.83e-36 | 129 |
| MS.gene86523.t1 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 317 | 420 | 51 | 154 | 8.51e-33 | 121 |
| MS.gene86523.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 1.12e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86523.t1 | AT5G65980 | 55.238 | 420 | 163 | 2 | 1 | 420 | 1 | 395 | 5.15e-168 | 477 |
| MS.gene86523.t1 | AT2G17500 | 52.732 | 421 | 171 | 4 | 1 | 419 | 1 | 395 | 2.96e-161 | 460 |
| MS.gene86523.t1 | AT2G17500 | 52.732 | 421 | 171 | 4 | 1 | 419 | 1 | 395 | 2.96e-161 | 460 |
| MS.gene86523.t1 | AT2G17500 | 52.732 | 421 | 171 | 4 | 1 | 419 | 1 | 395 | 2.96e-161 | 460 |
| MS.gene86523.t1 | AT2G17500 | 52.732 | 421 | 171 | 4 | 1 | 419 | 1 | 395 | 2.96e-161 | 460 |
| MS.gene86523.t1 | AT5G65980 | 53.525 | 383 | 153 | 2 | 1 | 383 | 1 | 358 | 4.48e-147 | 422 |
| MS.gene86523.t1 | AT1G76520 | 39.437 | 426 | 214 | 7 | 3 | 420 | 1 | 390 | 2.01e-110 | 330 |
| MS.gene86523.t1 | AT1G76520 | 39.437 | 426 | 214 | 7 | 3 | 420 | 1 | 390 | 2.01e-110 | 330 |
| MS.gene86523.t1 | AT1G20925 | 38.005 | 421 | 223 | 6 | 1 | 420 | 89 | 472 | 2.39e-105 | 320 |
| MS.gene86523.t1 | AT1G76530 | 39.211 | 431 | 235 | 8 | 1 | 420 | 1 | 415 | 1.76e-95 | 293 |
| MS.gene86523.t1 | AT1G76530 | 39.211 | 431 | 235 | 8 | 1 | 420 | 1 | 415 | 1.76e-95 | 293 |
| MS.gene86523.t1 | AT5G01990 | 32.266 | 406 | 263 | 7 | 7 | 411 | 28 | 422 | 1.61e-64 | 213 |
| MS.gene86523.t1 | AT1G71090 | 27.660 | 423 | 280 | 7 | 12 | 411 | 21 | 440 | 9.11e-55 | 188 |
| MS.gene86523.t1 | AT1G76530 | 45.238 | 168 | 89 | 2 | 1 | 168 | 1 | 165 | 4.76e-45 | 159 |
Find 81 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGATCATTGAAATTTA+AGG | 0.144664 | 5.1:-15225412 | MS.gene86523:CDS |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.1:-15225933 | MS.gene86523:CDS |
| GAGCATTGTCACCAATTATT+AGG | 0.231554 | 5.1:+15224775 | None:intergenic |
| TTGAATCTGTTACCTTGTTC+AGG | 0.261383 | 5.1:+15226417 | None:intergenic |
| CCTTTCTCATTACATATTGC+AGG | 0.286843 | 5.1:+15225699 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.1:+15225873 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.1:-15226497 | MS.gene86523:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.1:-15226486 | MS.gene86523:CDS |
| TTCAGGGATTTCCTAAAATC+TGG | 0.328940 | 5.1:+15226434 | None:intergenic |
| CAAGACACTCTTGAATTACT+TGG | 0.332662 | 5.1:-15224738 | MS.gene86523:CDS |
| ATTATTGCTGCCTGTTCATC+AGG | 0.346771 | 5.1:-15225849 | MS.gene86523:intron |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.1:-15225634 | MS.gene86523:CDS |
| GATCTTTGTTTGGCGCCTTT+AGG | 0.355140 | 5.1:+15225370 | None:intergenic |
| TTGGCGCGGTTGCATGGTTA+AGG | 0.374002 | 5.1:-15224800 | MS.gene86523:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.1:+15225942 | None:intergenic |
| AGCTTGGTGGTATCTTCATA+TGG | 0.376262 | 5.1:-15225458 | MS.gene86523:CDS |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.1:+15224396 | None:intergenic |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.1:+15226509 | None:intergenic |
| TGGTTAAGGAACCTAATAAT+TGG | 0.386910 | 5.1:-15224786 | MS.gene86523:CDS |
| AAACTAACTGTTGCAATTGC+TGG | 0.391515 | 5.1:+15224922 | None:intergenic |
| TATATATTATGCAGGTACTA+TGG | 0.394662 | 5.1:-15224198 | MS.gene86523:intron |
| GTGAAAGCCGCGGCGAGTTT+CGG | 0.396926 | 5.1:-15224477 | MS.gene86523:CDS |
| TTTCCATCAAGATCTTTGTT+TGG | 0.402387 | 5.1:+15225360 | None:intergenic |
| ACGATAAACAATCCAATAAC+AGG | 0.402677 | 5.1:+15224498 | None:intergenic |
| TCCTCTTTGGCGCGGTTGCA+TGG | 0.411798 | 5.1:-15224806 | MS.gene86523:CDS |
| ACCTAGCAAAAGGGTGATGC+AGG | 0.412797 | 5.1:+15224605 | None:intergenic |
| CTTTAATTAATCAGGAAACA+TGG | 0.436908 | 5.1:-15225745 | MS.gene86523:intron |
| TTGCTTCAATTCTAGCTTGG+TGG | 0.438321 | 5.1:-15225471 | MS.gene86523:intron |
| TGCAGATACTCCCCTTCTAA+AGG | 0.449404 | 5.1:-15225337 | MS.gene86523:CDS |
| TGAGGTTACCACCTAGCAAA+AGG | 0.453284 | 5.1:+15224595 | None:intergenic |
| GCGCCAAACAAAGATCTTGA+TGG | 0.457031 | 5.1:-15225363 | MS.gene86523:CDS |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.1:-15226498 | MS.gene86523:CDS |
| TGAATCTGTTACCTTGTTCA+GGG | 0.463963 | 5.1:+15226418 | None:intergenic |
| ACCAGAGTGTACTGAAACAA+AGG | 0.468557 | 5.1:+15224438 | None:intergenic |
| GCAGATACTCCCCTTCTAAA+GGG | 0.471997 | 5.1:-15225336 | MS.gene86523:CDS |
| CAGCCATAGCACTCACTGCT+TGG | 0.473437 | 5.1:-15224112 | MS.gene86523:CDS |
| TACTGAAACAAAGGATCCAC+TGG | 0.476356 | 5.1:+15224447 | None:intergenic |
| ATTGCAGGGATAATTACAAT+AGG | 0.477347 | 5.1:+15225714 | None:intergenic |
| CTTGGTCAACATTTCTCTTG+TGG | 0.479125 | 5.1:-15224094 | MS.gene86523:CDS |
| CACTTGAAGATATGATATCA+TGG | 0.485558 | 5.1:-15226091 | MS.gene86523:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.488484 | 5.1:-15225930 | MS.gene86523:CDS |
| ATGATGTATACCTGATGAAC+AGG | 0.490517 | 5.1:+15225839 | None:intergenic |
| AATGAGAAAGGAGGTCCGTT+TGG | 0.503866 | 5.1:-15225687 | MS.gene86523:CDS |
| CAAGTAATTCAAGAGTGTCT+TGG | 0.514562 | 5.1:+15224739 | None:intergenic |
| TCCTTTGTTTCAGTACACTC+TGG | 0.520407 | 5.1:-15224439 | MS.gene86523:CDS |
| TAAAATTCCTCCAATTAAGA+AGG | 0.522026 | 5.1:+15225923 | None:intergenic |
| ATGGCTCAGTTGTTTGATGT+AGG | 0.522905 | 5.1:-15224179 | MS.gene86523:CDS |
| CTTTCTCATTACATATTGCA+GGG | 0.526376 | 5.1:+15225700 | None:intergenic |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.1:-15225951 | MS.gene86523:CDS |
| TTTAATTAATCAGGAAACAT+GGG | 0.527026 | 5.1:-15225744 | MS.gene86523:intron |
| TCAGTCAATTGTATTGAAGA+AGG | 0.530132 | 5.1:-15225013 | MS.gene86523:CDS |
| ATTGAAATTTAAGGCACTTG+AGG | 0.531428 | 5.1:-15225403 | MS.gene86523:CDS |
| GGATATTAGTAAAATTACTA+AGG | 0.533486 | 5.1:-15225896 | MS.gene86523:CDS |
| CAAACATCATGTGCACCAAA+CGG | 0.534168 | 5.1:+15225672 | None:intergenic |
| CCTGCAATATGTAATGAGAA+AGG | 0.534181 | 5.1:-15225699 | MS.gene86523:CDS |
| ACTAAGGCCTAATTTGAAAG+TGG | 0.537496 | 5.1:-15225880 | MS.gene86523:CDS |
| AGTGTTCAGTTATTCTATTG+TGG | 0.544191 | 5.1:-15224148 | MS.gene86523:CDS |
| ACCATGCAACCGCGCCAAAG+AGG | 0.556288 | 5.1:+15224805 | None:intergenic |
| ATGATGCTGATCAGTGTCAA+TGG | 0.556763 | 5.1:+15224543 | None:intergenic |
| AAGACACTCTTGAATTACTT+GGG | 0.561735 | 5.1:-15224737 | MS.gene86523:intron |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.564939 | 5.1:-15225876 | MS.gene86523:CDS |
| TACACTTGATGATTTCAAGC+CGG | 0.566602 | 5.1:+15224569 | None:intergenic |
| CTAGGTGGTAACCTCACTGC+CGG | 0.571253 | 5.1:-15224588 | MS.gene86523:CDS |
| GAGGTTACCACCTAGCAAAA+GGG | 0.572920 | 5.1:+15224596 | None:intergenic |
| GTGTCTTGGATAACACTGAA+TGG | 0.577387 | 5.1:+15224753 | None:intergenic |
| TGAGGCTGCTGAAATCCTAA+AGG | 0.581618 | 5.1:-15225385 | MS.gene86523:CDS |
| TGATCAGCATCATTATAACT+AGG | 0.584304 | 5.1:-15224533 | MS.gene86523:CDS |
| CAGGGATAATTACAATAGGT+AGG | 0.591283 | 5.1:+15225718 | None:intergenic |
| AAACTTGCAAACACAAGTGA+AGG | 0.598059 | 5.1:+15226128 | None:intergenic |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.1:+15224399 | None:intergenic |
| GAATCTTCAATATAACTCGA+TGG | 0.621332 | 5.1:+15225279 | None:intergenic |
| CCTAGCAAAAGGGTGATGCA+GGG | 0.642605 | 5.1:+15224606 | None:intergenic |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.1:-15224814 | MS.gene86523:CDS |
| TGACCAAGCAGTGAGTGCTA+TGG | 0.669720 | 5.1:+15224109 | None:intergenic |
| GAGTTTCGGCATTCTCCCAG+TGG | 0.672011 | 5.1:-15224463 | MS.gene86523:CDS |
| ATTGTTTATCGTGAAAGCCG+CGG | 0.674070 | 5.1:-15224487 | MS.gene86523:CDS |
| GCAATATGTAATGAGAAAGG+AGG | 0.679242 | 5.1:-15225696 | MS.gene86523:CDS |
| CTAACTGTTGCAATTGCTGG+TGG | 0.683218 | 5.1:+15224925 | None:intergenic |
| ATGATTTCAAGCCGGCAGTG+AGG | 0.693753 | 5.1:+15224577 | None:intergenic |
| ACTGAAACAAAGGATCCACT+GGG | 0.699892 | 5.1:+15224448 | None:intergenic |
| GAGAATGCCGAAACTCGCCG+CGG | 0.795696 | 5.1:+15224470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAATCAATTTAAATATT+AGG | - | chr5.1:15224243-15224262 | MS.gene86523:intron | 10.0% |
| !!! | TATCATTAAATTTTTAAGTT+AGG | + | chr5.1:15226408-15226427 | None:intergenic | 10.0% |
| !! | AATAGATCATAATTTAATGT+TGG | - | chr5.1:15224630-15224649 | MS.gene86523:intron | 15.0% |
| !! | GAATTATTCTTTAATTAATC+AGG | - | chr5.1:15224871-15224890 | MS.gene86523:intron | 15.0% |
| !! | TAATAATCTAATATTAGTTG+AGG | + | chr5.1:15225549-15225568 | None:intergenic | 15.0% |
| !! | TTTAAACTATAAATACGAAT+AGG | + | chr5.1:15225033-15225052 | None:intergenic | 15.0% |
| !! | TTTAATGATATATATTATGC+AGG | - | chr5.1:15226418-15226437 | MS.gene86523:intron | 15.0% |
| !!! | AAACATTTTTAATGATCTTA+CGG | - | chr5.1:15225056-15225075 | MS.gene86523:intron | 15.0% |
| !!! | GTTTAAACATATAATTGTTT+TGG | + | chr5.1:15225970-15225989 | None:intergenic | 15.0% |
| !!! | TTTAAACTTTAAATCTTTTC+AGG | - | chr5.1:15225983-15226002 | MS.gene86523:intron | 15.0% |
| !!! | TTTTATAGTTTGAAAAGTAT+AGG | + | chr5.1:15225193-15225212 | None:intergenic | 15.0% |
| !! | GGATATTAGTAAAATTACTA+AGG | - | chr5.1:15224728-15224747 | MS.gene86523:intron | 20.0% |
| !! | GTAAGATCATTAAAAATGTT+TGG | + | chr5.1:15225057-15225076 | None:intergenic | 20.0% |
| !! | TGGTTATGTTAATTTAATAC+AGG | - | chr5.1:15224650-15224669 | MS.gene86523:intron | 20.0% |
| !! | TTATGAAATGAATGTTGATA+TGG | - | chr5.1:15225566-15225585 | MS.gene86523:intron | 20.0% |
| !! | TTATGTTAATTTAATACAGG+TGG | - | chr5.1:15224653-15224672 | MS.gene86523:intron | 20.0% |
| !! | TTTAATTAATCAGGAAACAT+GGG | - | chr5.1:15224880-15224899 | MS.gene86523:intron | 20.0% |
| !!! | AAAGTAGTAACTTTTTGTTT+TGG | - | chr5.1:15224436-15224455 | MS.gene86523:CDS | 20.0% |
| !!! | ATATACCAACATTTTTCTAT+CGG | + | chr5.1:15225429-15225448 | None:intergenic | 20.0% |
| !!! | TATTTGGTTTTTATGATTGA+AGG | + | chr5.1:15225919-15225938 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTAATTGAAGTAA+CGG | - | chr5.1:15226270-15226289 | MS.gene86523:intron | 20.0% |
| ! | AAGCAAAATGTTTAAATGTG+AGG | + | chr5.1:15225139-15225158 | None:intergenic | 25.0% |
| ! | AAGCAGATCATTGAAATTTA+AGG | - | chr5.1:15225212-15225231 | MS.gene86523:intron | 25.0% |
| ! | ATTAAAACAACATACATGCA+TGG | + | chr5.1:15226262-15226281 | None:intergenic | 25.0% |
| ! | CTTTAATTAATCAGGAAACA+TGG | - | chr5.1:15224879-15224898 | MS.gene86523:intron | 25.0% |
| ! | GTGAAGAACAAATATTTATC+AGG | - | chr5.1:15224300-15224319 | MS.gene86523:intron | 25.0% |
| ! | TAAAATTCCTCCAATTAAGA+AGG | + | chr5.1:15224704-15224723 | None:intergenic | 25.0% |
| ! | TATATATTATGCAGGTACTA+TGG | - | chr5.1:15226426-15226445 | MS.gene86523:intron | 25.0% |
| !! | ATATTCCATGATCAGTTTTT+CGG | - | chr5.1:15225793-15225812 | MS.gene86523:intron | 25.0% |
| !! | TATACCAACATTTTTCTATC+GGG | + | chr5.1:15225428-15225447 | None:intergenic | 25.0% |
| !! | TCGTATTTTCTCATTTATCA+GGG | - | chr5.1:15225461-15225480 | MS.gene86523:intron | 25.0% |
| !! | TTCGTATTTTCTCATTTATC+AGG | - | chr5.1:15225460-15225479 | MS.gene86523:intron | 25.0% |
| !! | TTCTTAATTGGAGGAATTTT+AGG | - | chr5.1:15224703-15224722 | MS.gene86523:intron | 25.0% |
| !!! | ACTTTAAATCTTTTCAGGAA+TGG | - | chr5.1:15225988-15226007 | MS.gene86523:intron | 25.0% |
| !!! | TTTTGGTTTTCTTGTTTTGT+AGG | - | chr5.1:15224453-15224472 | MS.gene86523:CDS | 25.0% |
| AAGACACTCTTGAATTACTT+GGG | - | chr5.1:15225887-15225906 | MS.gene86523:CDS | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.1:15224118-15224137 | None:intergenic | 30.0% | |
| ACGATAAACAATCCAATAAC+AGG | + | chr5.1:15226129-15226148 | None:intergenic | 30.0% | |
| AGTGTTCAGTTATTCTATTG+TGG | - | chr5.1:15226476-15226495 | MS.gene86523:CDS | 30.0% | |
| ATTGCAGGGATAATTACAAT+AGG | + | chr5.1:15224913-15224932 | None:intergenic | 30.0% | |
| ATTTATCAGGGTTTGAATTC+AGG | - | chr5.1:15225473-15225492 | MS.gene86523:intron | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.1:15226231-15226250 | None:intergenic | 30.0% | |
| CACTTGAAGATATGATATCA+TGG | - | chr5.1:15224533-15224552 | MS.gene86523:CDS | 30.0% | |
| CTTTCTCATTACATATTGCA+GGG | + | chr5.1:15224927-15224946 | None:intergenic | 30.0% | |
| GAAAAAGAGTAGACATTTGA+AGG | + | chr5.1:15225944-15225963 | None:intergenic | 30.0% | |
| GAATCTTCAATATAACTCGA+TGG | + | chr5.1:15225348-15225367 | None:intergenic | 30.0% | |
| TAGACATAATCTAGATCAAG+AGG | + | chr5.1:15225390-15225409 | None:intergenic | 30.0% | |
| TAGACATTTGAAGGACTATT+TGG | + | chr5.1:15225935-15225954 | None:intergenic | 30.0% | |
| TCAGTCAATTGTATTGAAGA+AGG | - | chr5.1:15225611-15225630 | MS.gene86523:intron | 30.0% | |
| TGATCAGCATCATTATAACT+AGG | - | chr5.1:15226091-15226110 | MS.gene86523:intron | 30.0% | |
| TGATCATGGAATATGAAGAT+GGG | + | chr5.1:15225787-15225806 | None:intergenic | 30.0% | |
| TGGTTAAGGAACCTAATAAT+TGG | - | chr5.1:15225838-15225857 | MS.gene86523:intron | 30.0% | |
| TGTGACACATTTATTGATCT+TGG | + | chr5.1:15224379-15224398 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.1:15226228-15226247 | None:intergenic | 30.0% | |
| TTTCCATCAAGATCTTTGTT+TGG | + | chr5.1:15225267-15225286 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.1:15224179-15224198 | MS.gene86523:CDS | 30.0% |
| ! | ATTGAAATTTAAGGCACTTG+AGG | - | chr5.1:15225221-15225240 | MS.gene86523:intron | 30.0% |
| ! | TTTTCCCGATAGAAAAATGT+TGG | - | chr5.1:15225421-15225440 | MS.gene86523:CDS | 30.0% |
| !! | ATCATCTTTTCCCTTTAGAA+GGG | + | chr5.1:15225301-15225320 | None:intergenic | 30.0% |
| !! | ATTTTGCTTCAATTCTAGCT+TGG | - | chr5.1:15225150-15225169 | MS.gene86523:intron | 30.0% |
| !! | TAATTGGAGGAATTTTAGGA+TGG | - | chr5.1:15224707-15224726 | MS.gene86523:intron | 30.0% |
| AAACTAACTGTTGCAATTGC+TGG | + | chr5.1:15225705-15225724 | None:intergenic | 35.0% | |
| AAACTTGCAAACACAAGTGA+AGG | + | chr5.1:15224499-15224518 | None:intergenic | 35.0% | |
| ACTAAGGCCTAATTTGAAAG+TGG | - | chr5.1:15224744-15224763 | MS.gene86523:CDS | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.1:15224754-15224773 | None:intergenic | 35.0% | |
| ATCATGGAATATGAAGATGG+GGG | + | chr5.1:15225785-15225804 | None:intergenic | 35.0% | |
| ATGAGAGTTAAAGGAGTTGA+AGG | + | chr5.1:15225500-15225519 | None:intergenic | 35.0% | |
| ATGATGTATACCTGATGAAC+AGG | + | chr5.1:15224788-15224807 | None:intergenic | 35.0% | |
| CAAGACACTCTTGAATTACT+TGG | - | chr5.1:15225886-15225905 | MS.gene86523:CDS | 35.0% | |
| CAGGGATAATTACAATAGGT+AGG | + | chr5.1:15224909-15224928 | None:intergenic | 35.0% | |
| CCTGCAATATGTAATGAGAA+AGG | - | chr5.1:15224925-15224944 | MS.gene86523:intron | 35.0% | |
| CCTTTAACTCTCATTTCAGA+TGG | - | chr5.1:15225506-15225525 | MS.gene86523:intron | 35.0% | |
| CCTTTCTCATTACATATTGC+AGG | + | chr5.1:15224928-15224947 | None:intergenic | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.1:15224990-15225009 | MS.gene86523:CDS | 35.0% | |
| CTGATCATGGAATATGAAGA+TGG | + | chr5.1:15225788-15225807 | None:intergenic | 35.0% | |
| GATCATGGAATATGAAGATG+GGG | + | chr5.1:15225786-15225805 | None:intergenic | 35.0% | |
| GCAATATGTAATGAGAAAGG+AGG | - | chr5.1:15224928-15224947 | MS.gene86523:intron | 35.0% | |
| TGAATCTGTTACCTTGTTCA+GGG | + | chr5.1:15224209-15224228 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.1:15224673-15224692 | MS.gene86523:intron | 35.0% | |
| TTCAGGGATTTCCTAAAATC+TGG | + | chr5.1:15224193-15224212 | None:intergenic | 35.0% | |
| TTGAATCTGTTACCTTGTTC+AGG | + | chr5.1:15224210-15224229 | None:intergenic | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.1:15224126-15224145 | MS.gene86523:CDS | 35.0% |
| ! | CATCATCTTTTCCCTTTAGA+AGG | + | chr5.1:15225302-15225321 | None:intergenic | 35.0% |
| ! | CCATCTGAAATGAGAGTTAA+AGG | + | chr5.1:15225509-15225528 | None:intergenic | 35.0% |
| ! | CTTTTCGTACTACCTGTTAT+TGG | - | chr5.1:15226114-15226133 | MS.gene86523:CDS | 35.0% |
| ! | GAGCATTGTCACCAATTATT+AGG | + | chr5.1:15225852-15225871 | None:intergenic | 35.0% |
| ! | GAGTTAGTTTCTGAGAGTAA+TGG | + | chr5.1:15224579-15224598 | None:intergenic | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.1:15224127-15224146 | MS.gene86523:CDS | 35.0% |
| ! | TACACTTGATGATTTCAAGC+CGG | + | chr5.1:15226058-15226077 | None:intergenic | 35.0% |
| !! | AGCAGCTAACTTTGATTTGA+TGG | + | chr5.1:15224812-15224831 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGTCT+TGG | + | chr5.1:15225888-15225907 | None:intergenic | 35.0% |
| !! | GCCATTGATTTGAGATTTGA+CGG | - | chr5.1:15224353-15224372 | MS.gene86523:intron | 35.0% |
| !! | TCATCTTTTCCCTTTAGAAG+GGG | + | chr5.1:15225300-15225319 | None:intergenic | 35.0% |
| !! | TTTTAGGAAATCCCTGAACA+AGG | - | chr5.1:15224195-15224214 | MS.gene86523:intron | 35.0% |
| !! | TTTTGTGCAACTTTTGGAAG+TGG | - | chr5.1:15224084-15224103 | MS.gene86523:CDS | 35.0% |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.1:15224685-15224704 | None:intergenic | 40.0% | |
| ACCAGAGTGTACTGAAACAA+AGG | + | chr5.1:15226189-15226208 | None:intergenic | 40.0% | |
| ACTGAAACAAAGGATCCACT+GGG | + | chr5.1:15226179-15226198 | None:intergenic | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.1:15224748-15224767 | MS.gene86523:CDS | 40.0% | |
| ATGATGCTGATCAGTGTCAA+TGG | + | chr5.1:15226084-15226103 | None:intergenic | 40.0% | |
| ATGGCTCAGTTGTTTGATGT+AGG | - | chr5.1:15226445-15226464 | MS.gene86523:CDS | 40.0% | |
| ATTATTGCTGCCTGTTCATC+AGG | - | chr5.1:15224775-15224794 | MS.gene86523:CDS | 40.0% | |
| ATTGTTTATCGTGAAAGCCG+CGG | - | chr5.1:15226137-15226156 | MS.gene86523:CDS | 40.0% | |
| CAAACATCATGTGCACCAAA+CGG | + | chr5.1:15224955-15224974 | None:intergenic | 40.0% | |
| CTTGGTCAACATTTCTCTTG+TGG | - | chr5.1:15226530-15226549 | MS.gene86523:CDS | 40.0% | |
| GCCGTCAAATCTCAAATCAA+TGG | + | chr5.1:15224357-15224376 | None:intergenic | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.1:15225801-15225820 | None:intergenic | 40.0% | |
| GTGTCTTGGATAACACTGAA+TGG | + | chr5.1:15225874-15225893 | None:intergenic | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.1:15224691-15224710 | MS.gene86523:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+TGG | + | chr5.1:15226180-15226199 | None:intergenic | 40.0% | |
| ! | AGCTTGGTGGTATCTTCATA+TGG | - | chr5.1:15225166-15225185 | MS.gene86523:intron | 40.0% |
| ! | TCCTTTGTTTCAGTACACTC+TGG | - | chr5.1:15226185-15226204 | MS.gene86523:intron | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.1:15225805-15225824 | MS.gene86523:intron | 40.0% |
| !! | TTGCTTCAATTCTAGCTTGG+TGG | - | chr5.1:15225153-15225172 | MS.gene86523:intron | 40.0% |
| AATGAGAAAGGAGGTCCGTT+TGG | - | chr5.1:15224937-15224956 | MS.gene86523:CDS | 45.0% | |
| CTAACTGTTGCAATTGCTGG+TGG | + | chr5.1:15225702-15225721 | None:intergenic | 45.0% | |
| GAGGTTACCACCTAGCAAAA+GGG | + | chr5.1:15226031-15226050 | None:intergenic | 45.0% | |
| GCAGATACTCCCCTTCTAAA+GGG | - | chr5.1:15225288-15225307 | MS.gene86523:CDS | 45.0% | |
| GCGCCAAACAAAGATCTTGA+TGG | - | chr5.1:15225261-15225280 | MS.gene86523:intron | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.1:15224694-15224713 | MS.gene86523:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.1:15224138-15224157 | MS.gene86523:CDS | 45.0% | |
| TGAGGCTGCTGAAATCCTAA+AGG | - | chr5.1:15225239-15225258 | MS.gene86523:intron | 45.0% | |
| TGAGGTTACCACCTAGCAAA+AGG | + | chr5.1:15226032-15226051 | None:intergenic | 45.0% | |
| TGCAGATACTCCCCTTCTAA+AGG | - | chr5.1:15225287-15225306 | MS.gene86523:CDS | 45.0% | |
| TGTGTCACACGTTTACTGTG+TGG | - | chr5.1:15224390-15224409 | MS.gene86523:intron | 45.0% | |
| ! | GATCTTTGTTTGGCGCCTTT+AGG | + | chr5.1:15225257-15225276 | None:intergenic | 45.0% |
| ACCTAGCAAAAGGGTGATGC+AGG | + | chr5.1:15226022-15226041 | None:intergenic | 50.0% | |
| ATGATTTCAAGCCGGCAGTG+AGG | + | chr5.1:15226050-15226069 | None:intergenic | 50.0% | |
| CCTAGCAAAAGGGTGATGCA+GGG | + | chr5.1:15226021-15226040 | None:intergenic | 50.0% | |
| TGACCAAGCAGTGAGTGCTA+TGG | + | chr5.1:15226518-15226537 | None:intergenic | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.1:15225810-15225829 | MS.gene86523:intron | 50.0% | |
| ! | TGCATCACCCTTTTGCTAGG+TGG | - | chr5.1:15226021-15226040 | MS.gene86523:intron | 50.0% |
| CAGCCATAGCACTCACTGCT+TGG | - | chr5.1:15226512-15226531 | MS.gene86523:CDS | 55.0% | |
| CTAGGTGGTAACCTCACTGC+CGG | - | chr5.1:15226036-15226055 | MS.gene86523:intron | 55.0% | |
| GAGTTTCGGCATTCTCCCAG+TGG | - | chr5.1:15226161-15226180 | MS.gene86523:intron | 55.0% | |
| TTGGCGCGGTTGCATGGTTA+AGG | - | chr5.1:15225824-15225843 | MS.gene86523:intron | 55.0% | |
| ! | CCCTGCATCACCCTTTTGCT+AGG | - | chr5.1:15226018-15226037 | MS.gene86523:intron | 55.0% |
| ACCATGCAACCGCGCCAAAG+AGG | + | chr5.1:15225822-15225841 | None:intergenic | 60.0% | |
| GAGAATGCCGAAACTCGCCG+CGG | + | chr5.1:15226157-15226176 | None:intergenic | 60.0% | |
| GTGAAAGCCGCGGCGAGTTT+CGG | - | chr5.1:15226147-15226166 | MS.gene86523:CDS | 60.0% | |
| TCCTCTTTGGCGCGGTTGCA+TGG | - | chr5.1:15225818-15225837 | MS.gene86523:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15224079 | 15226567 | 15224079 | ID=MS.gene86523 |
| chr5.1 | mRNA | 15224079 | 15226567 | 15224079 | ID=MS.gene86523.t1;Parent=MS.gene86523 |
| chr5.1 | exon | 15226430 | 15226567 | 15226430 | ID=MS.gene86523.t1.exon1;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15226430 | 15226567 | 15226430 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15226092 | 15226171 | 15226092 | ID=MS.gene86523.t1.exon2;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15226092 | 15226171 | 15226092 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15225850 | 15225974 | 15225850 | ID=MS.gene86523.t1.exon3;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15225850 | 15225974 | 15225850 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15225632 | 15225753 | 15225632 | ID=MS.gene86523.t1.exon4;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15225632 | 15225753 | 15225632 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15225266 | 15225478 | 15225266 | ID=MS.gene86523.t1.exon5;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15225266 | 15225478 | 15225266 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15224930 | 15225049 | 15224930 | ID=MS.gene86523.t1.exon6;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15224930 | 15225049 | 15224930 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15224738 | 15224838 | 15224738 | ID=MS.gene86523.t1.exon7;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15224738 | 15224838 | 15224738 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15224403 | 15224641 | 15224403 | ID=MS.gene86523.t1.exon8;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15224403 | 15224641 | 15224403 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| chr5.1 | exon | 15224079 | 15224206 | 15224079 | ID=MS.gene86523.t1.exon9;Parent=MS.gene86523.t1 |
| chr5.1 | CDS | 15224079 | 15224206 | 15224079 | ID=cds.MS.gene86523.t1;Parent=MS.gene86523.t1 |
| Gene Sequence |
| Protein sequence |
