Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64907.t1 | XP_003612402.1 | 95.5 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 1.30E-218 | 768.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64907.t1 | Q9FKY4 | 56.3 | 421 | 157 | 3 | 1 | 420 | 1 | 395 | 1.1e-127 | 458.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64907.t1 | G7K1C1 | 95.5 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 9.1e-219 | 768.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64907 | MS.gene86523 | PPI |
| MS.gene69976 | MS.gene64907 | PPI |
| MS.gene64907 | MS.gene86524 | PPI |
| MS.gene82524 | MS.gene64907 | PPI |
| MS.gene72674 | MS.gene64907 | PPI |
| MS.gene65344 | MS.gene64907 | PPI |
| MS.gene64907 | MS.gene64908 | PPI |
| MS.gene64906 | MS.gene64907 | PPI |
| MS.gene64907 | MS.gene23822 | PPI |
| MS.gene64907 | MS.gene86525 | PPI |
| MS.gene64907 | MS.gene72672 | PPI |
| MS.gene64907 | MS.gene066493 | PPI |
| MS.gene99561 | MS.gene64907 | PPI |
| MS.gene64907 | MS.gene72673 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64907.t1 | MTR_5g024640 | 95.487 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 0.0 | 815 |
| MS.gene64907.t1 | MTR_5g024660 | 89.048 | 420 | 46 | 0 | 1 | 420 | 1 | 420 | 0.0 | 762 |
| MS.gene64907.t1 | MTR_5g024640 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 733 |
| MS.gene64907.t1 | MTR_5g024520 | 75.772 | 421 | 36 | 2 | 1 | 421 | 1 | 355 | 0.0 | 607 |
| MS.gene64907.t1 | MTR_5g024640 | 94.000 | 300 | 18 | 0 | 1 | 300 | 1 | 300 | 0.0 | 575 |
| MS.gene64907.t1 | MTR_5g024560 | 92.857 | 266 | 19 | 0 | 156 | 421 | 35 | 300 | 0.0 | 506 |
| MS.gene64907.t1 | MTR_8g073160 | 60.238 | 420 | 126 | 4 | 1 | 420 | 1 | 379 | 2.25e-177 | 500 |
| MS.gene64907.t1 | MTR_5g024970 | 42.588 | 425 | 231 | 5 | 1 | 420 | 1 | 417 | 7.25e-122 | 360 |
| MS.gene64907.t1 | MTR_5g024970 | 40.265 | 452 | 230 | 6 | 1 | 420 | 1 | 444 | 2.52e-116 | 347 |
| MS.gene64907.t1 | MTR_8g072560 | 41.315 | 426 | 220 | 6 | 1 | 419 | 1 | 403 | 3.07e-114 | 340 |
| MS.gene64907.t1 | MTR_5g024580 | 94.231 | 156 | 9 | 0 | 1 | 156 | 1 | 156 | 1.42e-102 | 302 |
| MS.gene64907.t1 | MTR_5g024970 | 43.182 | 352 | 188 | 4 | 74 | 420 | 9 | 353 | 7.57e-101 | 304 |
| MS.gene64907.t1 | MTR_5g024970 | 40.674 | 386 | 216 | 5 | 1 | 381 | 1 | 378 | 7.61e-101 | 305 |
| MS.gene64907.t1 | MTR_8g006780 | 40.618 | 421 | 236 | 4 | 1 | 419 | 1 | 409 | 2.35e-96 | 295 |
| MS.gene64907.t1 | MTR_8g006775 | 35.476 | 420 | 265 | 3 | 1 | 419 | 1 | 415 | 1.01e-90 | 280 |
| MS.gene64907.t1 | MTR_5g024970 | 38.720 | 328 | 178 | 5 | 1 | 318 | 1 | 315 | 9.06e-78 | 244 |
| MS.gene64907.t1 | MTR_5g024970 | 39.016 | 305 | 173 | 5 | 1 | 300 | 1 | 297 | 1.39e-70 | 226 |
| MS.gene64907.t1 | MTR_5g024970 | 50.867 | 173 | 84 | 1 | 1 | 173 | 1 | 172 | 1.33e-59 | 195 |
| MS.gene64907.t1 | MTR_5g024970 | 50.867 | 173 | 84 | 1 | 1 | 173 | 1 | 172 | 2.86e-59 | 194 |
| MS.gene64907.t1 | MTR_7g074190 | 31.415 | 417 | 261 | 6 | 7 | 419 | 26 | 421 | 1.05e-58 | 197 |
| MS.gene64907.t1 | MTR_5g054950 | 27.500 | 440 | 290 | 8 | 7 | 421 | 17 | 452 | 8.66e-54 | 186 |
| MS.gene64907.t1 | MTR_8g006780 | 40.991 | 222 | 124 | 3 | 1 | 222 | 1 | 215 | 4.04e-50 | 173 |
| MS.gene64907.t1 | MTR_8g006780 | 45.405 | 185 | 98 | 2 | 236 | 419 | 157 | 339 | 1.12e-29 | 118 |
| MS.gene64907.t1 | MTR_1g108390 | 26.009 | 446 | 294 | 7 | 7 | 421 | 19 | 459 | 8.96e-49 | 172 |
| MS.gene64907.t1 | MTR_5g024530 | 94.286 | 70 | 4 | 0 | 1 | 70 | 1 | 70 | 5.31e-38 | 135 |
| MS.gene64907.t1 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 317 | 420 | 51 | 154 | 6.29e-32 | 119 |
| MS.gene64907.t1 | MTR_5g020660 | 76.744 | 43 | 10 | 0 | 3 | 45 | 100 | 142 | 5.47e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64907.t1 | AT5G65980 | 56.295 | 421 | 157 | 3 | 1 | 420 | 1 | 395 | 6.83e-169 | 479 |
| MS.gene64907.t1 | AT2G17500 | 53.919 | 421 | 166 | 4 | 1 | 419 | 1 | 395 | 1.19e-163 | 466 |
| MS.gene64907.t1 | AT2G17500 | 53.919 | 421 | 166 | 4 | 1 | 419 | 1 | 395 | 1.19e-163 | 466 |
| MS.gene64907.t1 | AT2G17500 | 53.919 | 421 | 166 | 4 | 1 | 419 | 1 | 395 | 1.19e-163 | 466 |
| MS.gene64907.t1 | AT2G17500 | 53.919 | 421 | 166 | 4 | 1 | 419 | 1 | 395 | 1.19e-163 | 466 |
| MS.gene64907.t1 | AT5G65980 | 54.974 | 382 | 145 | 3 | 1 | 381 | 1 | 356 | 5.16e-148 | 425 |
| MS.gene64907.t1 | AT1G76520 | 40.094 | 424 | 214 | 7 | 3 | 420 | 1 | 390 | 7.43e-112 | 334 |
| MS.gene64907.t1 | AT1G76520 | 40.094 | 424 | 214 | 7 | 3 | 420 | 1 | 390 | 7.43e-112 | 334 |
| MS.gene64907.t1 | AT1G20925 | 38.333 | 420 | 223 | 6 | 1 | 420 | 89 | 472 | 4.87e-104 | 317 |
| MS.gene64907.t1 | AT1G76530 | 39.540 | 435 | 228 | 7 | 1 | 420 | 1 | 415 | 5.27e-98 | 299 |
| MS.gene64907.t1 | AT1G76530 | 39.540 | 435 | 228 | 7 | 1 | 420 | 1 | 415 | 5.27e-98 | 299 |
| MS.gene64907.t1 | AT5G01990 | 32.108 | 408 | 261 | 7 | 7 | 411 | 28 | 422 | 1.03e-61 | 206 |
| MS.gene64907.t1 | AT1G71090 | 27.423 | 423 | 281 | 7 | 12 | 411 | 21 | 440 | 1.35e-49 | 174 |
| MS.gene64907.t1 | AT1G76530 | 45.833 | 168 | 88 | 2 | 1 | 168 | 1 | 165 | 5.64e-46 | 162 |
Find 74 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGCCTTTA+TGG | 0.142088 | 5.3:+14263508 | None:intergenic |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.3:-14264161 | MS.gene64907:CDS |
| AAGCAGCTCATTGAGATTTA+AGG | 0.177124 | 5.3:-14263549 | MS.gene64907:CDS |
| AGACCTTCTACTTTCAAATT+AGG | 0.276363 | 5.3:+14264101 | None:intergenic |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.3:+14262947 | None:intergenic |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.3:+14264580 | None:intergenic |
| ATCTTGAAGTGAAACACTTT+TGG | 0.313652 | 5.3:+14264304 | None:intergenic |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.323305 | 5.3:-14264632 | MS.gene64907:CDS |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.3:-14262932 | MS.gene64907:CDS |
| TGGTTAAGGAACTTAATAAT+TGG | 0.345062 | 5.3:-14262980 | MS.gene64907:CDS |
| CCTTTCTCATCACATATTGC+TGG | 0.361228 | 5.3:+14263936 | None:intergenic |
| ATAAGTAGTACTTGAATAAC+TGG | 0.369154 | 5.3:+14264655 | None:intergenic |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.369482 | 5.3:+14263497 | None:intergenic |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.3:+14262933 | None:intergenic |
| TTGGCGCGGTTGCATGGTTA+AGG | 0.374002 | 5.3:-14262994 | MS.gene64907:CDS |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.3:+14262588 | None:intergenic |
| ATTATTGCTGCATGTTCATC+AGG | 0.383193 | 5.3:-14264077 | MS.gene64907:intron |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.3:+14262690 | None:intergenic |
| AAAATCACATACCTTGTTCA+AGG | 0.399892 | 5.3:+14264564 | None:intergenic |
| TCCTCTTTGGCGCGGTTGCA+TGG | 0.411798 | 5.3:-14263000 | MS.gene64907:CDS |
| GTACTACTTATTAGTGCATT+GGG | 0.412857 | 5.3:-14264643 | MS.gene64907:CDS |
| GTTAAAGCGGCAGCGAGTTA+CGG | 0.416442 | 5.3:-14262669 | MS.gene64907:CDS |
| AAGCCTAATTTGAAAGTAGA+AGG | 0.426732 | 5.3:-14264104 | MS.gene64907:CDS |
| CAGCCATAGCTCTCACTGCT+TGG | 0.432625 | 5.3:-14261900 | MS.gene64907:CDS |
| TCTTATAGTTTGAAAAGTAT+AGG | 0.432637 | 5.3:+14263571 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.433109 | 5.3:+14263909 | None:intergenic |
| GAACTCACTATAGAAATTGC+TGG | 0.437401 | 5.3:+14263116 | None:intergenic |
| AGTACTACTTATTAGTGCAT+TGG | 0.443410 | 5.3:-14264644 | MS.gene64907:CDS |
| CTTTAATTAACCAGGAAACA+TGG | 0.454338 | 5.3:-14263982 | MS.gene64907:intron |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.3:+14262630 | None:intergenic |
| TACTGAAACAAAGGATCCAC+TGG | 0.458962 | 5.3:+14262639 | None:intergenic |
| AAGGTGAGTCCAACATTAAC+CGG | 0.459669 | 5.3:+14264170 | None:intergenic |
| TGCTGGTGGTGATATTAGTT+CGG | 0.459978 | 5.3:+14263133 | None:intergenic |
| CTTGGTGGTAACCTCACTGC+AGG | 0.471719 | 5.3:-14262780 | MS.gene64907:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.474607 | 5.3:+14263951 | None:intergenic |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.3:-14264292 | MS.gene64907:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.3:-14264158 | MS.gene64907:CDS |
| TGAGGCTGCTGAGACCATAA+AGG | 0.496562 | 5.3:-14263522 | MS.gene64907:CDS |
| GATGAGAAAGGAGGTCCATT+TGG | 0.502562 | 5.3:-14263924 | MS.gene64907:CDS |
| TTTATACAGGTGGTTTATGC+CGG | 0.503609 | 5.3:-14264189 | MS.gene64907:intron |
| CTCATATGCATCTTTCTCAA+TGG | 0.504086 | 5.3:-14263871 | MS.gene64907:CDS |
| ATTATTCGATTGTAGCTTGG+TGG | 0.506240 | 5.3:-14263608 | MS.gene64907:intron |
| CTTTCTCATCACATATTGCT+GGG | 0.510924 | 5.3:+14263937 | None:intergenic |
| TGGTTTATGCCGGTTAATGT+TGG | 0.515810 | 5.3:-14264179 | MS.gene64907:CDS |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.3:-14264157 | MS.gene64907:CDS |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.3:+14264151 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.3:-14262631 | MS.gene64907:CDS |
| GCACCAAACAAAGATCTTGA+AGG | 0.527698 | 5.3:-14263500 | MS.gene64907:CDS |
| ATTGAGATTTAAGGCACTTG+AGG | 0.546011 | 5.3:-14263540 | MS.gene64907:CDS |
| TTTAATTAACCAGGAAACAT+GGG | 0.548770 | 5.3:-14263981 | MS.gene64907:intron |
| ACCATGCAACCGCGCCAAAG+AGG | 0.556288 | 5.3:+14262999 | None:intergenic |
| TCAGTCTCATGAATCGAAGA+AGG | 0.559071 | 5.3:-14263207 | MS.gene64907:CDS |
| ATGGCTCAGCTGTTTGATGT+AGG | 0.559808 | 5.3:-14261967 | MS.gene64907:CDS |
| CTTGGTCAACATTTCTCCTG+TGG | 0.562289 | 5.3:-14261882 | MS.gene64907:CDS |
| TTTAATAAGATAATAGCCAC+AGG | 0.569237 | 5.3:+14261866 | None:intergenic |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.3:-14262931 | MS.gene64907:intron |
| TGGATTGTTTATTGTTAAAG+CGG | 0.577798 | 5.3:-14262682 | MS.gene64907:CDS |
| CCAGCAATATGTGATGAGAA+AGG | 0.578816 | 5.3:-14263936 | MS.gene64907:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.3:+14264329 | None:intergenic |
| AGTGTTCAGTTATTCTGCTG+TGG | 0.596982 | 5.3:-14261936 | MS.gene64907:CDS |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.3:+14262591 | None:intergenic |
| CAACGGTAACACTTCTATCA+CGG | 0.611802 | 5.3:+14263433 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.3:+14262735 | None:intergenic |
| GATACATTATGTAGGTACAA+TGG | 0.624909 | 5.3:-14261986 | MS.gene64907:intron |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.3:-14262725 | MS.gene64907:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.3:+14262798 | None:intergenic |
| GAGTCTTCAGTATAACTCAA+CGG | 0.661784 | 5.3:+14263416 | None:intergenic |
| GAGTTACGGCTTTCTCCCAG+TGG | 0.666001 | 5.3:-14262655 | MS.gene64907:CDS |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.3:-14263008 | MS.gene64907:CDS |
| TGACCAAGCAGTGAGAGCTA+TGG | 0.689222 | 5.3:+14261897 | None:intergenic |
| CTCACTATAGAAATTGCTGG+TGG | 0.689744 | 5.3:+14263119 | None:intergenic |
| ACTGAAACAAAGGATCCACT+GGG | 0.692332 | 5.3:+14262640 | None:intergenic |
| GCAATATGTGATGAGAAAGG+AGG | 0.713358 | 5.3:-14263933 | MS.gene64907:CDS |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.3:+14262769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATATTTTCAAATTATTAT+TGG | + | chr5.3:14262800-14262819 | None:intergenic | 10.0% |
| !! | TGATGAAATTCAATAAATAA+GGG | - | chr5.3:14264189-14264208 | MS.gene64907:intron | 15.0% |
| !! | TTGATGAAATTCAATAAATA+AGG | - | chr5.3:14264188-14264207 | MS.gene64907:intron | 15.0% |
| !! | AAAAATAATAAATGCTGCAT+TGG | - | chr5.3:14264225-14264244 | MS.gene64907:intron | 20.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.3:14262232-14262251 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGATAAAGAAAA+GGG | + | chr5.3:14263467-14263486 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.3:14263714-14263733 | None:intergenic | 20.0% |
| !! | CAAAGTATAAAAATGTGAAT+AGG | + | chr5.3:14262727-14262746 | None:intergenic | 20.0% |
| !! | CTACTAACTACAATTAATAA+GGG | + | chr5.3:14264157-14264176 | None:intergenic | 20.0% |
| !! | CTTTAAATTCATACAAAAGA+TGG | + | chr5.3:14264410-14264429 | None:intergenic | 20.0% |
| !! | GTGAATATCAAATATTTAAC+AGG | - | chr5.3:14262021-14262040 | MS.gene64907:intron | 20.0% |
| !! | TCTACTAACTACAATTAATA+AGG | + | chr5.3:14264158-14264177 | None:intergenic | 20.0% |
| !!! | AATTTGATGATACATTATGT+AGG | - | chr5.3:14264564-14264583 | MS.gene64907:intron | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+AGG | - | chr5.3:14264408-14264427 | MS.gene64907:intron | 20.0% |
| !!! | CTATTCACATTTTTATACTT+TGG | - | chr5.3:14262725-14262744 | MS.gene64907:CDS | 20.0% |
| !!! | TAAATGCGTGATTTTTTAAA+GGG | + | chr5.3:14262086-14262105 | None:intergenic | 20.0% |
| !!! | TATCATCAAATTTTGAAGTT+AGG | + | chr5.3:14264556-14264575 | None:intergenic | 20.0% |
| !!! | TCTTATAGTTTGAAAAGTAT+AGG | + | chr5.3:14262990-14263009 | None:intergenic | 20.0% |
| !!! | TGGTTTTTATGAAGAAATTA+AGG | + | chr5.3:14263659-14263678 | None:intergenic | 20.0% |
| !!! | TGTAAAAAGTTTTACACTTA+GGG | + | chr5.3:14264369-14264388 | None:intergenic | 20.0% |
| ! | AAACGACTATAATTTAGAGA+CGG | + | chr5.3:14264056-14264075 | None:intergenic | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.3:14263871-14263890 | None:intergenic | 25.0% |
| ! | ATAAAAATGTGAATAGGATG+AGG | + | chr5.3:14262721-14262740 | None:intergenic | 25.0% |
| ! | ATAAGTAGTACTTGAATAAC+TGG | + | chr5.3:14261906-14261925 | None:intergenic | 25.0% |
| ! | ATAATTATTCGATTGTAGCT+TGG | - | chr5.3:14262947-14262966 | MS.gene64907:CDS | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | chr5.3:14262275-14262294 | MS.gene64907:intron | 25.0% |
| ! | CAAGAAAGAAGATAAAGAAA+AGG | + | chr5.3:14263468-14263487 | None:intergenic | 25.0% |
| ! | CTCTAAATTATAGTCGTTTA+AGG | - | chr5.3:14264057-14264076 | MS.gene64907:intron | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.3:14262568-14262587 | MS.gene64907:intron | 25.0% |
| ! | TAGGAACAGCAATATAATAT+AGG | + | chr5.3:14264537-14264556 | None:intergenic | 25.0% |
| ! | TGGATTGTTTATTGTTAAAG+CGG | - | chr5.3:14263876-14263895 | MS.gene64907:CDS | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.3:14263578-14263597 | MS.gene64907:CDS | 25.0% |
| ! | TGTAAAAATCTATAGACTGT+CGG | - | chr5.3:14264495-14264514 | MS.gene64907:intron | 25.0% |
| ! | TGTTTATTCCTGATTTATAC+AGG | - | chr5.3:14262356-14262375 | MS.gene64907:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.3:14262577-14262596 | MS.gene64907:intron | 25.0% |
| !! | GTGTAAAAAGTTTTACACTT+AGG | + | chr5.3:14264370-14264389 | None:intergenic | 25.0% |
| !! | TGTCAATCAATCATAACTTT+TGG | + | chr5.3:14264474-14264493 | None:intergenic | 25.0% |
| !! | TTATTCCATGATCAGTTTTT+CGG | - | chr5.3:14263533-14263552 | MS.gene64907:CDS | 25.0% |
| !!! | ACATATGGCTTTTAAGTTTT+CGG | - | chr5.3:14262290-14262309 | MS.gene64907:intron | 25.0% |
| !!! | ATTAGTTGTGTTGATTTCAA+TGG | - | chr5.3:14264105-14264124 | MS.gene64907:CDS | 25.0% |
| !!! | GTAAATGCGTGATTTTTTAA+AGG | + | chr5.3:14262087-14262106 | None:intergenic | 25.0% |
| !!! | TAACTCTGATTTTGTTATCA+TGG | - | chr5.3:14262324-14262343 | MS.gene64907:intron | 25.0% |
| !!! | TTACATGCATTCATTGATTT+CGG | - | chr5.3:14262103-14262122 | MS.gene64907:intron | 25.0% |
| AAAATCACATACCTTGTTCA+AGG | + | chr5.3:14261997-14262016 | None:intergenic | 30.0% | |
| AAATGTATAGCAGAGAAGAA+AGG | + | chr5.3:14263494-14263513 | None:intergenic | 30.0% | |
| AACTTGATTCTTTGCAGAAA+TGG | - | chr5.3:14263730-14263749 | MS.gene64907:intron | 30.0% | |
| AAGAATACAACCTGCAAAAT+AGG | + | chr5.3:14262199-14262218 | None:intergenic | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | - | chr5.3:14264291-14264310 | MS.gene64907:intron | 30.0% | |
| AAGCCTAATTTGAAAGTAGA+AGG | - | chr5.3:14262454-14262473 | MS.gene64907:intron | 30.0% | |
| AATCTCACGTAATGTATCTA+TGG | + | chr5.3:14264334-14264353 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.3:14263931-14263950 | None:intergenic | 30.0% | |
| AGACCTTCTACTTTCAAATT+AGG | + | chr5.3:14262460-14262479 | None:intergenic | 30.0% | |
| AGTACTACTTATTAGTGCAT+TGG | - | chr5.3:14261914-14261933 | MS.gene64907:CDS | 30.0% | |
| ATAAACCACCTGTATAAATC+AGG | + | chr5.3:14262367-14262386 | None:intergenic | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.3:14262610-14262629 | None:intergenic | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.3:14263973-14263992 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.3:14262266-14262285 | MS.gene64907:intron | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.3:14262576-14262595 | MS.gene64907:intron | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | chr5.3:14263688-14263707 | None:intergenic | 30.0% | |
| GATACATTATGTAGGTACAA+TGG | - | chr5.3:14264572-14264591 | MS.gene64907:intron | 30.0% | |
| GTACTACTTATTAGTGCATT+GGG | - | chr5.3:14261915-14261934 | MS.gene64907:CDS | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.3:14262410-14262429 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.3:14263970-14263989 | None:intergenic | 30.0% | |
| TTATTCCTGATTTATACAGG+TGG | - | chr5.3:14262359-14262378 | MS.gene64907:intron | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.3:14261981-14262000 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.3:14263064-14263083 | None:intergenic | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.3:14263627-14263646 | MS.gene64907:intron | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.3:14261967-14261986 | MS.gene64907:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.3:14262257-14262276 | None:intergenic | 30.0% |
| ! | TACAAAAGATGGTTTGTGAT+CGG | + | chr5.3:14264399-14264418 | None:intergenic | 30.0% |
| ! | TAGAGACTTTAAGGACTATT+TGG | + | chr5.3:14263679-14263698 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.3:14263927-14263946 | MS.gene64907:CDS | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.3:14262409-14262428 | MS.gene64907:intron | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.3:14261983-14262002 | MS.gene64907:intron | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.3:14261872-14261891 | MS.gene64907:CDS | 30.0% |
| !!! | CATATGGCTTTTAAGTTTTC+GGG | - | chr5.3:14262291-14262310 | MS.gene64907:intron | 30.0% |
| !!! | GTCATTGATTTTAGATTCCT+TGG | - | chr5.3:14262125-14262144 | MS.gene64907:intron | 30.0% |
| !!! | TGACTTTGTCTTGGTTTTTT+TGG | - | chr5.3:14262169-14262188 | MS.gene64907:intron | 30.0% |
| !!! | TTTTGGTTTACCTATTTTGC+AGG | - | chr5.3:14262186-14262205 | MS.gene64907:intron | 30.0% |
| !!! | TTTTTTAAAGGGAGAGAATG+TGG | + | chr5.3:14262075-14262094 | None:intergenic | 30.0% |
| AAAGCCAAATTGTAAGACCT+TGG | - | chr5.3:14263167-14263186 | MS.gene64907:CDS | 35.0% | |
| AAGCAGCTCATTGAGATTTA+AGG | - | chr5.3:14263009-14263028 | MS.gene64907:CDS | 35.0% | |
| AAGCCAAATTGTAAGACCTT+GGG | - | chr5.3:14263168-14263187 | MS.gene64907:CDS | 35.0% | |
| AGGTTTGTGCACGATTATTA+AGG | - | chr5.3:14264077-14264096 | MS.gene64907:intron | 35.0% | |
| AGTGTCTTCTATCAGAAGTA+TGG | - | chr5.3:14262866-14262885 | MS.gene64907:intron | 35.0% | |
| ATTATTCGATTGTAGCTTGG+TGG | - | chr5.3:14262950-14262969 | MS.gene64907:CDS | 35.0% | |
| ATTATTGCTGCATGTTCATC+AGG | - | chr5.3:14262481-14262500 | MS.gene64907:intron | 35.0% | |
| CACTACTTTCCGATTAGAAT+CGG | + | chr5.3:14262151-14262170 | None:intergenic | 35.0% | |
| CCTGAAAATCAAGATAGTTG+AGG | + | chr5.3:14263318-14263337 | None:intergenic | 35.0% | |
| CTCATATGCATCTTTCTCAA+TGG | - | chr5.3:14262687-14262706 | MS.gene64907:CDS | 35.0% | |
| CTTTCTCATCACATATTGCT+GGG | + | chr5.3:14262624-14262643 | None:intergenic | 35.0% | |
| GAACTCACTATAGAAATTGC+TGG | + | chr5.3:14263445-14263464 | None:intergenic | 35.0% | |
| GACTATAATTTAGAGACGGA+GGG | + | chr5.3:14264052-14264071 | None:intergenic | 35.0% | |
| GAGTCTTCAGTATAACTCAA+CGG | + | chr5.3:14263145-14263164 | None:intergenic | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.3:14263833-14263852 | MS.gene64907:intron | 35.0% | |
| TTTATACAGGTGGTTTATGC+CGG | - | chr5.3:14262369-14262388 | MS.gene64907:intron | 35.0% | |
| ! | ATAGCATAATTTAGCTCCCA+AGG | + | chr5.3:14263187-14263206 | None:intergenic | 35.0% |
| ! | ATTGAGATTTAAGGCACTTG+AGG | - | chr5.3:14263018-14263037 | MS.gene64907:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.3:14263626-14263645 | MS.gene64907:intron | 35.0% |
| ! | CCTCAACTATCTTGATTTTC+AGG | - | chr5.3:14263315-14263334 | MS.gene64907:intron | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.3:14263614-14263633 | None:intergenic | 35.0% |
| ! | TCCTTAACTCTTGTTTCAGA+CGG | - | chr5.3:14263276-14263295 | MS.gene64907:intron | 35.0% |
| !! | ATCTTTGTTTGGTGCCTTTA+TGG | + | chr5.3:14263053-14263072 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.3:14263628-14263647 | None:intergenic | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.3:14262413-14262432 | MS.gene64907:intron | 35.0% |
| !! | TTCGACTTTTCCCTTTAGAA+GGG | + | chr5.3:14263098-14263117 | None:intergenic | 35.0% |
| AACTCTGCAGCATGATTCTA+AGG | - | chr5.3:14262047-14262066 | MS.gene64907:intron | 40.0% | |
| AAGGTGAGTCCAACATTAAC+CGG | + | chr5.3:14262391-14262410 | None:intergenic | 40.0% | |
| ACTCTGCAGCATGATTCTAA+GGG | - | chr5.3:14262048-14262067 | MS.gene64907:intron | 40.0% | |
| ACTGAAACAAAGGATCCACT+GGG | + | chr5.3:14263921-14263940 | None:intergenic | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | - | chr5.3:14264294-14264313 | MS.gene64907:CDS | 40.0% | |
| AGTGTTCAGTTATTCTGCTG+TGG | - | chr5.3:14264622-14264641 | MS.gene64907:CDS | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.3:14263826-14263845 | None:intergenic | 40.0% | |
| CAACGGTAACACTTCTATCA+CGG | + | chr5.3:14263128-14263147 | None:intergenic | 40.0% | |
| CCAGCAATATGTGATGAGAA+AGG | - | chr5.3:14262622-14262641 | MS.gene64907:CDS | 40.0% | |
| CCTTTCTCATCACATATTGC+TGG | + | chr5.3:14262625-14262644 | None:intergenic | 40.0% | |
| CGACTATAATTTAGAGACGG+AGG | + | chr5.3:14264053-14264072 | None:intergenic | 40.0% | |
| CTCACTATAGAAATTGCTGG+TGG | + | chr5.3:14263442-14263461 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr5.3:14264295-14264314 | MS.gene64907:CDS | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.3:14262401-14262420 | MS.gene64907:intron | 40.0% | |
| GCAATATGTGATGAGAAAGG+AGG | - | chr5.3:14262625-14262644 | MS.gene64907:CDS | 40.0% | |
| GCACCAAACAAAGATCTTGA+AGG | - | chr5.3:14263058-14263077 | MS.gene64907:intron | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.3:14263541-14263560 | None:intergenic | 40.0% | |
| GGAAAGTAGTGACTTTGTCT+TGG | - | chr5.3:14262160-14262179 | MS.gene64907:intron | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.3:14262397-14262416 | MS.gene64907:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+TGG | + | chr5.3:14263922-14263941 | None:intergenic | 40.0% | |
| TCAGTCTCATGAATCGAAGA+AGG | - | chr5.3:14263351-14263370 | MS.gene64907:intron | 40.0% | |
| TGAATCACTGATACAGACAC+CGG | - | chr5.3:14262752-14262771 | MS.gene64907:CDS | 40.0% | |
| ! | ACCGTCTGAAACAAGAGTTA+AGG | + | chr5.3:14263280-14263299 | None:intergenic | 40.0% |
| ! | ATTCCTTGGCCGATTCTAAT+CGG | - | chr5.3:14262139-14262158 | MS.gene64907:intron | 40.0% |
| ! | CTTCGACTTTTCCCTTTAGA+AGG | + | chr5.3:14263099-14263118 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.3:14263856-14263875 | MS.gene64907:intron | 40.0% |
| ! | TGCTGGTGGTGATATTAGTT+CGG | + | chr5.3:14263428-14263447 | None:intergenic | 40.0% |
| ! | TGGTTTATGCCGGTTAATGT+TGG | - | chr5.3:14262379-14262398 | MS.gene64907:intron | 40.0% |
| !! | AGCTTGGTGGTATTTTCGTA+TGG | - | chr5.3:14262963-14262982 | MS.gene64907:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.3:14263545-14263564 | MS.gene64907:CDS | 40.0% |
| !! | TCGACTTTTCCCTTTAGAAG+GGG | + | chr5.3:14263097-14263116 | None:intergenic | 40.0% |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.3:14263792-14263811 | None:intergenic | 45.0% | |
| ATGGCTCAGCTGTTTGATGT+AGG | - | chr5.3:14264591-14264610 | MS.gene64907:CDS | 45.0% | |
| CTTGGTCAACATTTCTCCTG+TGG | - | chr5.3:14264676-14264695 | MS.gene64907:CDS | 45.0% | |
| GATGAGAAAGGAGGTCCATT+TGG | - | chr5.3:14262634-14262653 | MS.gene64907:CDS | 45.0% | |
| GCTCCCAAGGTCTTACAATT+TGG | + | chr5.3:14263174-14263193 | None:intergenic | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.3:14262400-14262419 | MS.gene64907:intron | 45.0% | |
| GTAGATACCCCCCTTCTAAA+GGG | - | chr5.3:14263085-14263104 | MS.gene64907:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.3:14261926-14261945 | MS.gene64907:CDS | 45.0% | |
| TGTAGATACCCCCCTTCTAA+AGG | - | chr5.3:14263084-14263103 | MS.gene64907:intron | 45.0% | |
| TTTCCGATTAGAATCGGCCA+AGG | + | chr5.3:14262145-14262164 | None:intergenic | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.3:14263763-14263782 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.3:14263760-14263779 | MS.gene64907:intron | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.3:14263763-14263782 | MS.gene64907:intron | 45.0% |
| !! | CGACTTTTCCCTTTAGAAGG+GGG | + | chr5.3:14263096-14263115 | None:intergenic | 45.0% |
| !! | GACTTTTCCCTTTAGAAGGG+GGG | + | chr5.3:14263095-14263114 | None:intergenic | 45.0% |
| ACTGATACAGACACCGGACA+CGG | - | chr5.3:14262758-14262777 | MS.gene64907:CDS | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.3:14262652-14262671 | None:intergenic | 50.0% | |
| CGTCTGTGTCAATGCCATGT+CGG | - | chr5.3:14262835-14262854 | MS.gene64907:intron | 50.0% | |
| GACACTTCTAGTGTCCGACA+TGG | + | chr5.3:14262852-14262871 | None:intergenic | 50.0% | |
| GGCAAGTTTCCCATGTTTCC+TGG | + | chr5.3:14262589-14262608 | None:intergenic | 50.0% | |
| GTTAAAGCGGCAGCGAGTTA+CGG | - | chr5.3:14263889-14263908 | MS.gene64907:CDS | 50.0% | |
| TGACCAAGCAGTGAGAGCTA+TGG | + | chr5.3:14264664-14264683 | None:intergenic | 50.0% | |
| TGAGGCTGCTGAGACCATAA+AGG | - | chr5.3:14263036-14263055 | MS.gene64907:intron | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.3:14263550-14263569 | MS.gene64907:CDS | 50.0% | |
| CAGCCATAGCTCTCACTGCT+TGG | - | chr5.3:14264658-14264677 | MS.gene64907:CDS | 55.0% | |
| GAGTTACGGCTTTCTCCCAG+TGG | - | chr5.3:14263903-14263922 | MS.gene64907:CDS | 55.0% | |
| TTGGCGCGGTTGCATGGTTA+AGG | - | chr5.3:14263564-14263583 | MS.gene64907:CDS | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+AGG | - | chr5.3:14263778-14263797 | MS.gene64907:intron | 55.0% |
| ACCATGCAACCGCGCCAAAG+AGG | + | chr5.3:14263562-14263581 | None:intergenic | 60.0% | |
| TCCTCTTTGGCGCGGTTGCA+TGG | - | chr5.3:14263558-14263577 | MS.gene64907:CDS | 60.0% | |
| ! | CGATGTGTGAGTGCCGTGTC+CGG | + | chr5.3:14262774-14262793 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14261867 | 14264713 | 14261867 | ID=MS.gene64907 |
| chr5.3 | mRNA | 14261867 | 14264713 | 14261867 | ID=MS.gene64907.t1;Parent=MS.gene64907 |
| chr5.3 | exon | 14264576 | 14264713 | 14264576 | ID=MS.gene64907.t1.exon1;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14264576 | 14264713 | 14264576 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14264293 | 14264372 | 14264293 | ID=MS.gene64907.t1.exon2;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14264293 | 14264372 | 14264293 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14264078 | 14264202 | 14264078 | ID=MS.gene64907.t1.exon3;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14264078 | 14264202 | 14264078 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14263869 | 14263990 | 14263869 | ID=MS.gene64907.t1.exon4;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14263869 | 14263990 | 14263869 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14263403 | 14263615 | 14263403 | ID=MS.gene64907.t1.exon5;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14263403 | 14263615 | 14263403 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14263124 | 14263243 | 14263124 | ID=MS.gene64907.t1.exon6;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14263124 | 14263243 | 14263124 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14262932 | 14263032 | 14262932 | ID=MS.gene64907.t1.exon7;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14262932 | 14263032 | 14262932 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14262595 | 14262833 | 14262595 | ID=MS.gene64907.t1.exon8;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14262595 | 14262833 | 14262595 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| chr5.3 | exon | 14261867 | 14261994 | 14261867 | ID=MS.gene64907.t1.exon9;Parent=MS.gene64907.t1 |
| chr5.3 | CDS | 14261867 | 14261994 | 14261867 | ID=cds.MS.gene64907.t1;Parent=MS.gene64907.t1 |
| Gene Sequence |
| Protein sequence |
