Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82524.t1 | XP_003612404.1 | 86 | 379 | 10 | 1 | 1 | 336 | 1 | 379 | 6.20E-160 | 573.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82524.t1 | Q9FKY4 | 47.9 | 378 | 131 | 2 | 1 | 336 | 1 | 354 | 1.3e-92 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82524.t1 | G7K1C3 | 86.0 | 379 | 10 | 1 | 1 | 336 | 1 | 379 | 4.5e-160 | 573.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64906 | MS.gene82524 | PPI |
| MS.gene82524 | MS.gene23822 | PPI |
| MS.gene82524 | MS.gene86525 | PPI |
| MS.gene82524 | MS.gene64908 | PPI |
| MS.gene82524 | MS.gene65344 | PPI |
| MS.gene82524 | MS.gene066493 | PPI |
| MS.gene82524 | MS.gene64907 | PPI |
| MS.gene82524 | MS.gene72673 | PPI |
| MS.gene82524 | MS.gene69976 | PPI |
| MS.gene99561 | MS.gene82524 | PPI |
| MS.gene82524 | MS.gene86523 | PPI |
| MS.gene82524 | MS.gene86524 | PPI |
| MS.gene82524 | MS.gene72672 | PPI |
| MS.gene69976 | MS.gene82524 | PPI |
| MS.gene72674 | MS.gene82524 | PPI |
| MS.gene65344 | MS.gene82524 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82524.t1 | MTR_5g024660 | 85.752 | 379 | 11 | 1 | 1 | 336 | 1 | 379 | 0.0 | 638 |
| MS.gene82524.t1 | MTR_5g024640 | 78.364 | 379 | 39 | 1 | 1 | 336 | 1 | 379 | 0.0 | 587 |
| MS.gene82524.t1 | MTR_5g024640 | 78.364 | 379 | 39 | 1 | 1 | 336 | 1 | 379 | 0.0 | 586 |
| MS.gene82524.t1 | MTR_5g024520 | 73.371 | 353 | 37 | 3 | 1 | 336 | 1 | 313 | 7.87e-172 | 481 |
| MS.gene82524.t1 | MTR_5g024640 | 74.667 | 300 | 33 | 1 | 1 | 257 | 1 | 300 | 2.66e-157 | 442 |
| MS.gene82524.t1 | MTR_5g024560 | 77.600 | 250 | 52 | 2 | 87 | 336 | 13 | 258 | 1.77e-137 | 392 |
| MS.gene82524.t1 | MTR_8g073160 | 51.451 | 379 | 100 | 5 | 1 | 336 | 1 | 338 | 2.77e-126 | 367 |
| MS.gene82524.t1 | MTR_5g024970 | 37.275 | 389 | 178 | 6 | 1 | 336 | 1 | 376 | 5.97e-87 | 266 |
| MS.gene82524.t1 | MTR_5g024970 | 37.275 | 389 | 178 | 6 | 1 | 336 | 1 | 376 | 1.15e-86 | 267 |
| MS.gene82524.t1 | MTR_5g024970 | 40.694 | 317 | 164 | 5 | 31 | 336 | 9 | 312 | 2.15e-83 | 256 |
| MS.gene82524.t1 | MTR_5g024970 | 35.096 | 416 | 177 | 7 | 1 | 336 | 1 | 403 | 3.78e-81 | 254 |
| MS.gene82524.t1 | MTR_8g072560 | 36.198 | 384 | 175 | 5 | 1 | 336 | 1 | 362 | 3.84e-80 | 250 |
| MS.gene82524.t1 | MTR_8g006780 | 35.989 | 364 | 174 | 6 | 1 | 318 | 1 | 351 | 2.60e-65 | 212 |
| MS.gene82524.t1 | MTR_5g024580 | 65.663 | 166 | 14 | 1 | 1 | 123 | 1 | 166 | 1.17e-63 | 199 |
| MS.gene82524.t1 | MTR_5g024970 | 35.366 | 328 | 146 | 6 | 1 | 275 | 1 | 315 | 1.91e-63 | 204 |
| MS.gene82524.t1 | MTR_5g024970 | 34.516 | 310 | 137 | 6 | 1 | 257 | 1 | 297 | 1.78e-56 | 186 |
| MS.gene82524.t1 | MTR_8g006775 | 34.494 | 316 | 184 | 8 | 31 | 336 | 73 | 375 | 2.09e-56 | 189 |
| MS.gene82524.t1 | MTR_5g024970 | 33.086 | 269 | 123 | 5 | 1 | 225 | 1 | 256 | 1.26e-43 | 151 |
| MS.gene82524.t1 | MTR_5g024970 | 33.086 | 269 | 123 | 5 | 1 | 225 | 1 | 256 | 3.44e-43 | 150 |
| MS.gene82524.t1 | MTR_5g054950 | 28.354 | 328 | 209 | 5 | 31 | 334 | 83 | 408 | 1.64e-39 | 145 |
| MS.gene82524.t1 | MTR_1g108390 | 27.066 | 351 | 220 | 8 | 18 | 334 | 67 | 415 | 2.97e-37 | 139 |
| MS.gene82524.t1 | MTR_7g074190 | 30.982 | 326 | 199 | 5 | 14 | 331 | 70 | 377 | 2.97e-35 | 133 |
| MS.gene82524.t1 | MTR_8g006780 | 39.103 | 156 | 52 | 1 | 1 | 113 | 1 | 156 | 1.99e-31 | 121 |
| MS.gene82524.t1 | MTR_8g006780 | 41.085 | 129 | 71 | 2 | 192 | 318 | 156 | 281 | 1.43e-15 | 77.0 |
| MS.gene82524.t1 | MTR_5g024960 | 50.794 | 63 | 31 | 0 | 274 | 336 | 51 | 113 | 2.66e-13 | 67.0 |
| MS.gene82524.t1 | MTR_5g024530 | 93.750 | 32 | 2 | 0 | 1 | 32 | 1 | 32 | 4.43e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82524.t1 | AT5G65980 | 47.884 | 378 | 131 | 2 | 1 | 336 | 1 | 354 | 4.55e-120 | 350 |
| MS.gene82524.t1 | AT5G65980 | 47.884 | 378 | 131 | 2 | 1 | 336 | 1 | 354 | 4.63e-120 | 352 |
| MS.gene82524.t1 | AT2G17500 | 46.579 | 380 | 134 | 4 | 1 | 336 | 1 | 355 | 5.76e-120 | 351 |
| MS.gene82524.t1 | AT2G17500 | 46.579 | 380 | 134 | 4 | 1 | 336 | 1 | 355 | 5.76e-120 | 351 |
| MS.gene82524.t1 | AT2G17500 | 46.579 | 380 | 134 | 4 | 1 | 336 | 1 | 355 | 5.76e-120 | 351 |
| MS.gene82524.t1 | AT2G17500 | 46.579 | 380 | 134 | 4 | 1 | 336 | 1 | 355 | 5.76e-120 | 351 |
| MS.gene82524.t1 | AT1G76520 | 32.461 | 382 | 177 | 8 | 3 | 336 | 1 | 349 | 1.76e-68 | 219 |
| MS.gene82524.t1 | AT1G76520 | 32.461 | 382 | 177 | 8 | 3 | 336 | 1 | 349 | 1.76e-68 | 219 |
| MS.gene82524.t1 | AT1G20925 | 36.656 | 311 | 160 | 5 | 27 | 336 | 157 | 431 | 4.54e-67 | 218 |
| MS.gene82524.t1 | AT1G76530 | 37.231 | 325 | 170 | 9 | 27 | 336 | 69 | 374 | 4.79e-55 | 185 |
| MS.gene82524.t1 | AT1G76530 | 37.231 | 325 | 170 | 9 | 27 | 336 | 69 | 374 | 4.79e-55 | 185 |
| MS.gene82524.t1 | AT5G01990 | 32.353 | 306 | 197 | 5 | 27 | 331 | 90 | 386 | 4.04e-43 | 154 |
| MS.gene82524.t1 | AT1G71090 | 28.875 | 329 | 205 | 7 | 31 | 334 | 82 | 406 | 1.34e-38 | 142 |
| MS.gene82524.t1 | AT1G76530 | 47.475 | 99 | 50 | 1 | 27 | 125 | 69 | 165 | 4.63e-26 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGATCATTGAAATTTA+AGG | 0.144664 | 5.2:-15360460 | MS.gene82524:CDS |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.2:-15360987 | MS.gene82524:CDS |
| GAGCATTATCACCAATTATT+AGG | 0.231554 | 5.2:+15359822 | None:intergenic |
| TCTTTCTCATTACATATTGC+AGG | 0.302953 | 5.2:+15360747 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.2:+15360927 | None:intergenic |
| TCAATACAATTGACTGATCT+TGG | 0.314985 | 5.2:+15360072 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.2:-15361555 | MS.gene82524:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.2:-15361544 | MS.gene82524:CDS |
| CAAGACACTCTTGAATTACT+TGG | 0.332662 | 5.2:-15359785 | MS.gene82524:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.2:+15360996 | None:intergenic |
| AGCTTGGTGGTATCTTCATA+TGG | 0.376262 | 5.2:-15360506 | MS.gene82524:CDS |
| TTTCCATCAAGATCTTTGTT+TGG | 0.380708 | 5.2:+15360408 | None:intergenic |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.2:+15359462 | None:intergenic |
| GTGAAAACCGCGGCGAGTTT+CGG | 0.382303 | 5.2:-15359543 | MS.gene82524:CDS |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.2:+15361567 | None:intergenic |
| TGGTTAAGGAACCTAATAAT+TGG | 0.386910 | 5.2:-15359833 | MS.gene82524:CDS |
| TCGGCGCGGTTGCATGGTTA+AGG | 0.387370 | 5.2:-15359847 | MS.gene82524:CDS |
| ATTATTGCTTCATGTTCATC+AGG | 0.388417 | 5.2:-15360903 | MS.gene82524:intron |
| AAACTAACTGTTGCAATTGC+TGG | 0.391515 | 5.2:+15359975 | None:intergenic |
| ACAATAAACAAGCCAATAAC+AGG | 0.393339 | 5.2:+15359564 | None:intergenic |
| ACCAAGCAAAAGGGTGATGC+AGG | 0.431309 | 5.2:+15359671 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.2:+15360720 | None:intergenic |
| TCCTCTTCGGCGCGGTTGCA+TGG | 0.431756 | 5.2:-15359853 | MS.gene82524:CDS |
| TCTTATAGTTTGATAAGTAT+AGG | 0.432637 | 5.2:+15360482 | None:intergenic |
| TTGCTTCATTTCTAGCTTGG+TGG | 0.435651 | 5.2:-15360519 | MS.gene82524:intron |
| CTTTAATTAATCAGGAAACA+TGG | 0.436248 | 5.2:-15360793 | MS.gene82524:intron |
| CTCGTATGCATCTTTCTCTA+TGG | 0.442668 | 5.2:-15360682 | MS.gene82524:CDS |
| TGCAGATACTCCTCTTCTAA+AGG | 0.443675 | 5.2:-15360385 | MS.gene82524:CDS |
| GCAGATACTCCTCTTCTAAA+GGG | 0.445763 | 5.2:-15360384 | MS.gene82524:CDS |
| GCACCAAACAAAGATCTTGA+TGG | 0.446090 | 5.2:-15360411 | MS.gene82524:CDS |
| TGAGGTTACCACCAAGCAAA+AGG | 0.453284 | 5.2:+15359661 | None:intergenic |
| ACCAGAGTGTACTGAAACAA+TGG | 0.454657 | 5.2:+15359504 | None:intergenic |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.2:-15361556 | MS.gene82524:CDS |
| TACTGAAACAATGGATCCAC+TGG | 0.463953 | 5.2:+15359513 | None:intergenic |
| AATGAGAAAGAAGGTCCATT+TGG | 0.467448 | 5.2:-15360735 | MS.gene82524:CDS |
| CTTGGTGGTAACCTCACTGC+AGG | 0.471719 | 5.2:-15359654 | MS.gene82524:CDS |
| ATTGCAGGGATGATTACAAT+TGG | 0.480547 | 5.2:+15360762 | None:intergenic |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.2:-15360984 | MS.gene82524:CDS |
| TTTAATTAATCAGGAAACAT+GGG | 0.512740 | 5.2:-15360792 | MS.gene82524:intron |
| CAAGTAATTCAAGAGTGTCT+TGG | 0.514562 | 5.2:+15359786 | None:intergenic |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.2:-15360983 | MS.gene82524:CDS |
| CTTTCTCATTACATATTGCA+GGG | 0.518940 | 5.2:+15360748 | None:intergenic |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.2:+15360977 | None:intergenic |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.2:-15361005 | MS.gene82524:CDS |
| TCAGTCAATTGTATTGAAGA+AGG | 0.530132 | 5.2:-15360066 | MS.gene82524:CDS |
| ATTGAAATTTAAGGCACTTG+AGG | 0.531428 | 5.2:-15360451 | MS.gene82524:CDS |
| GCAATATGTAATGAGAAAGA+AGG | 0.544589 | 5.2:-15360744 | MS.gene82524:CDS |
| ACCATGCAACCGCGCCGAAG+AGG | 0.548813 | 5.2:+15359852 | None:intergenic |
| ACTGAGGCCTAATTTGAAAG+TGG | 0.556128 | 5.2:-15360934 | MS.gene82524:CDS |
| ATGATGCTGATCAGTGTCAA+TGG | 0.556763 | 5.2:+15359609 | None:intergenic |
| AAGACACTCTTGAATTACTT+GGG | 0.561735 | 5.2:-15359784 | MS.gene82524:intron |
| GTGTCTTGGATAACACTGAA+TGG | 0.577387 | 5.2:+15359800 | None:intergenic |
| GAGGTTACCACCAAGCAAAA+GGG | 0.578025 | 5.2:+15359662 | None:intergenic |
| TGAGGCTGCTGAGATTCTAA+AGG | 0.581898 | 5.2:-15360433 | MS.gene82524:CDS |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.586714 | 5.2:-15360930 | MS.gene82524:CDS |
| TCCATTGTTTCAGTACACTC+TGG | 0.591585 | 5.2:-15359505 | MS.gene82524:CDS |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.2:+15359465 | None:intergenic |
| CCAAGCAAAAGGGTGATGCA+GGG | 0.627721 | 5.2:+15359672 | None:intergenic |
| GAGTCTTCAATATAACTCGA+TGG | 0.644317 | 5.2:+15360327 | None:intergenic |
| TGATCAGCATCATTATAACT+CGG | 0.644729 | 5.2:-15359599 | MS.gene82524:CDS |
| GAGTTTCGGCATTCTCCCAG+TGG | 0.672011 | 5.2:-15359529 | MS.gene82524:CDS |
| CTAACTGTTGCAATTGCTGG+TGG | 0.683218 | 5.2:+15359978 | None:intergenic |
| CTTGTTTATTGTGAAAACCG+CGG | 0.687149 | 5.2:-15359553 | MS.gene82524:CDS |
| ACTGAAACAATGGATCCACT+GGG | 0.696241 | 5.2:+15359514 | None:intergenic |
| GGATATTAGTAAAATTACTG+AGG | 0.706826 | 5.2:-15360950 | MS.gene82524:CDS |
| CATACGAGAGTGCATTACTG+TGG | 0.718919 | 5.2:+15360697 | None:intergenic |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.2:+15359643 | None:intergenic |
| TTTCGGTTTCCTCTTCGGCG+CGG | 0.730222 | 5.2:-15359861 | MS.gene82524:CDS |
| GAGAATGCCGAAACTCGCCG+CGG | 0.782084 | 5.2:+15359536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAATCAATTTAAATATT+AGG | - | chr5.2:15359633-15359652 | MS.gene82524:CDS | 10.0% |
| !! | AATAGATCATAATTTAATGT+TGG | - | chr5.2:15360024-15360043 | MS.gene82524:CDS | 15.0% |
| !! | GAATTATTCTTTAATTAATC+AGG | - | chr5.2:15360271-15360290 | MS.gene82524:intron | 15.0% |
| !! | TTTAAACTATAAATACGAAT+AGG | + | chr5.2:15360433-15360452 | None:intergenic | 15.0% |
| !!! | AAACATTTTTAATGATCTTA+CGG | - | chr5.2:15360456-15360475 | MS.gene82524:CDS | 15.0% |
| !!! | TAGTATTTTCTCATTTATTA+GGG | - | chr5.2:15360856-15360875 | MS.gene82524:intron | 15.0% |
| !!! | TATTTTGTATTTATGATTGA+AGG | + | chr5.2:15361320-15361339 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTCTCATTTATT+AGG | - | chr5.2:15360855-15360874 | MS.gene82524:intron | 15.0% |
| !! | CTAACATAACAACTAATATA+CGG | + | chr5.2:15360839-15360858 | None:intergenic | 20.0% |
| !! | TCTTATAGTTTGATAAGTAT+AGG | + | chr5.2:15360593-15360612 | None:intergenic | 20.0% |
| !! | TGGTTATGTTAATTTAATAC+AGG | - | chr5.2:15360044-15360063 | MS.gene82524:CDS | 20.0% |
| !! | TTATGTTAATTTAATACAGG+TGG | - | chr5.2:15360047-15360066 | MS.gene82524:CDS | 20.0% |
| !! | TTTAATTAATCAGGAAACAT+GGG | - | chr5.2:15360280-15360299 | MS.gene82524:intron | 20.0% |
| ! | AAGCAAAATGTTTAAATGTG+AGG | + | chr5.2:15360539-15360558 | None:intergenic | 25.0% |
| ! | AAGCAGATCATTGAAATTTA+AGG | - | chr5.2:15360612-15360631 | MS.gene82524:intron | 25.0% |
| ! | ATTTATTAGGGTTTGAATTC+AGG | - | chr5.2:15360868-15360887 | MS.gene82524:intron | 25.0% |
| ! | CTTTAATTAATCAGGAAACA+TGG | - | chr5.2:15360279-15360298 | MS.gene82524:intron | 25.0% |
| ! | GGATATTAGTAAAATTACTG+AGG | - | chr5.2:15360122-15360141 | MS.gene82524:intron | 25.0% |
| ! | GTAAAAATTCTTTACACTGA+CGG | - | chr5.2:15360497-15360516 | MS.gene82524:CDS | 25.0% |
| ! | GTGAAGAACAAATATTTATC+AGG | - | chr5.2:15359690-15359709 | MS.gene82524:intron | 25.0% |
| !! | ATATTCCATGATCAGTTTTT+CGG | - | chr5.2:15361194-15361213 | MS.gene82524:intron | 25.0% |
| !! | ATTCCTGAAAAGAATTGTTT+TGG | + | chr5.2:15361371-15361390 | None:intergenic | 25.0% |
| !! | TAACCAAAACAATTCTTTTC+AGG | - | chr5.2:15361365-15361384 | MS.gene82524:intron | 25.0% |
| !!! | AAAACAATTCTTTTCAGGAA+TGG | - | chr5.2:15361370-15361389 | MS.gene82524:intron | 25.0% |
| !!! | AGCAATTAACTTTGATTTGA+TGG | + | chr5.2:15360212-15360231 | None:intergenic | 25.0% |
| !!! | TGAATAGTGACTTTTTGTTT+TGG | - | chr5.2:15359823-15359842 | MS.gene82524:CDS | 25.0% |
| !!! | TTCTTGTTTTCTTGTTTTGT+AGG | - | chr5.2:15359848-15359867 | MS.gene82524:CDS | 25.0% |
| AAGACACTCTTGAATTACTT+GGG | - | chr5.2:15361288-15361307 | MS.gene82524:intron | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.2:15359508-15359527 | None:intergenic | 30.0% | |
| ACAATAAACAAGCCAATAAC+AGG | + | chr5.2:15361511-15361530 | None:intergenic | 30.0% | |
| ATTATTGCTTCATGTTCATC+AGG | - | chr5.2:15360169-15360188 | MS.gene82524:intron | 30.0% | |
| CACTTGAAGATATGATATCA+TGG | - | chr5.2:15359928-15359947 | MS.gene82524:intron | 30.0% | |
| CTTTCTCATTACATATTGCA+GGG | + | chr5.2:15360327-15360346 | None:intergenic | 30.0% | |
| GAAAAAAAGTAGACACTTGA+AGG | + | chr5.2:15361345-15361364 | None:intergenic | 30.0% | |
| GAAAAACTGATCATGGAATA+TGG | + | chr5.2:15361195-15361214 | None:intergenic | 30.0% | |
| GAGCATTATCACCAATTATT+AGG | + | chr5.2:15361253-15361272 | None:intergenic | 30.0% | |
| GCAATATGTAATGAGAAAGA+AGG | - | chr5.2:15360328-15360347 | MS.gene82524:CDS | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.2:15360098-15360117 | None:intergenic | 30.0% | |
| TAGACATAATCTAGATCAAG+AGG | + | chr5.2:15360790-15360809 | None:intergenic | 30.0% | |
| TCAATACAATTGACTGATCT+TGG | + | chr5.2:15361003-15361022 | None:intergenic | 30.0% | |
| TCAGTCAATTGTATTGAAGA+AGG | - | chr5.2:15361006-15361025 | MS.gene82524:CDS | 30.0% | |
| TCTTTCTCATTACATATTGC+AGG | + | chr5.2:15360328-15360347 | None:intergenic | 30.0% | |
| TGATCAGCATCATTATAACT+CGG | - | chr5.2:15361473-15361492 | MS.gene82524:intron | 30.0% | |
| TGGTTAAGGAACCTAATAAT+TGG | - | chr5.2:15361239-15361258 | MS.gene82524:intron | 30.0% | |
| TTTCCATCAAGATCTTTGTT+TGG | + | chr5.2:15360667-15360686 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.2:15359569-15359588 | MS.gene82524:CDS | 30.0% |
| ! | ATTGAAATTTAAGGCACTTG+AGG | - | chr5.2:15360621-15360640 | MS.gene82524:intron | 30.0% |
| ! | TCATCTGAAATAAGAGTTGA+AGG | + | chr5.2:15360904-15360923 | None:intergenic | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.2:15360097-15360116 | MS.gene82524:intron | 30.0% |
| !!! | ATTTTGCTTCATTTCTAGCT+TGG | - | chr5.2:15360550-15360569 | MS.gene82524:intron | 30.0% |
| AAACTAACTGTTGCAATTGC+TGG | + | chr5.2:15361100-15361119 | None:intergenic | 35.0% | |
| AAACTGATCATGGAATATGG+AGG | + | chr5.2:15361192-15361211 | None:intergenic | 35.0% | |
| AAACTTGCAAACACAAGTGA+AGG | + | chr5.2:15359894-15359913 | None:intergenic | 35.0% | |
| AATGAGAAAGAAGGTCCATT+TGG | - | chr5.2:15360337-15360356 | MS.gene82524:CDS | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.2:15360148-15360167 | None:intergenic | 35.0% | |
| ATAAGAGTTGAAGGAGTTGA+AGG | + | chr5.2:15360895-15360914 | None:intergenic | 35.0% | |
| ATTGCAGGGATGATTACAAT+TGG | + | chr5.2:15360313-15360332 | None:intergenic | 35.0% | |
| CAAGACACTCTTGAATTACT+TGG | - | chr5.2:15361287-15361306 | MS.gene82524:intron | 35.0% | |
| CTTGTTTATTGTGAAAACCG+CGG | - | chr5.2:15361519-15361538 | MS.gene82524:intron | 35.0% | |
| GAGTCTTCAATATAACTCGA+TGG | + | chr5.2:15360748-15360767 | None:intergenic | 35.0% | |
| TGAATCTGTTACCTTGTTCA+GGG | + | chr5.2:15359599-15359618 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.2:15360067-15360086 | MS.gene82524:CDS | 35.0% | |
| TTCAGGGATTTCCTAAAATC+TGG | + | chr5.2:15359583-15359602 | None:intergenic | 35.0% | |
| TTGAATCTGTTACCTTGTTC+AGG | + | chr5.2:15359600-15359619 | None:intergenic | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.2:15359516-15359535 | MS.gene82524:CDS | 35.0% |
| ! | CTTTTCGTACTACCTGTTAT+TGG | - | chr5.2:15361496-15361515 | MS.gene82524:intron | 35.0% |
| ! | GAGTTAGTTTCTGAGAGTAA+TGG | + | chr5.2:15359974-15359993 | None:intergenic | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.2:15359517-15359536 | MS.gene82524:CDS | 35.0% |
| !! | CAAGTAATTCAAGAGTGTCT+TGG | + | chr5.2:15361289-15361308 | None:intergenic | 35.0% |
| !! | CCATTGATTTGAGATTTGAC+GGG | - | chr5.2:15359744-15359763 | MS.gene82524:intron | 35.0% |
| !! | GCCATTGATTTGAGATTTGA+CGG | - | chr5.2:15359743-15359762 | MS.gene82524:intron | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.2:15360101-15360120 | MS.gene82524:intron | 35.0% |
| !! | TTTTAGGAAATCCCTGAACA+AGG | - | chr5.2:15359585-15359604 | MS.gene82524:CDS | 35.0% |
| !! | TTTTGTGCAACTTTTGGAAG+TGG | - | chr5.2:15359474-15359493 | MS.gene82524:CDS | 35.0% |
| !!! | TCGTTTTTTCCCTTTAGAAG+AGG | + | chr5.2:15360700-15360719 | None:intergenic | 35.0% |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.2:15360079-15360098 | None:intergenic | 40.0% | |
| AATTCCACACAGTAAACGTG+TGG | + | chr5.2:15359787-15359806 | None:intergenic | 40.0% | |
| ACCAGAGTGTACTGAAACAA+TGG | + | chr5.2:15361571-15361590 | None:intergenic | 40.0% | |
| ACTGAAACAATGGATCCACT+GGG | + | chr5.2:15361561-15361580 | None:intergenic | 40.0% | |
| ACTGAGGCCTAATTTGAAAG+TGG | - | chr5.2:15360138-15360157 | MS.gene82524:intron | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.2:15360142-15360161 | MS.gene82524:intron | 40.0% | |
| ATGATGCTGATCAGTGTCAA+TGG | + | chr5.2:15361466-15361485 | None:intergenic | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.2:15360398-15360417 | MS.gene82524:CDS | 40.0% | |
| CCCGTCAAATCTCAAATCAA+TGG | + | chr5.2:15359747-15359766 | None:intergenic | 40.0% | |
| CTCGTATGCATCTTTCTCTA+TGG | - | chr5.2:15360390-15360409 | MS.gene82524:CDS | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.2:15360089-15360108 | MS.gene82524:intron | 40.0% | |
| GCACCAAACAAAGATCTTGA+TGG | - | chr5.2:15360661-15360680 | MS.gene82524:intron | 40.0% | |
| GCAGATACTCCTCTTCTAAA+GGG | - | chr5.2:15360688-15360707 | MS.gene82524:CDS | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.2:15361202-15361221 | None:intergenic | 40.0% | |
| GTGTCTTGGATAACACTGAA+TGG | + | chr5.2:15361275-15361294 | None:intergenic | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.2:15360085-15360104 | MS.gene82524:intron | 40.0% | |
| TACTGAAACAATGGATCCAC+TGG | + | chr5.2:15361562-15361581 | None:intergenic | 40.0% | |
| TCCATTGTTTCAGTACACTC+TGG | - | chr5.2:15361567-15361586 | MS.gene82524:CDS | 40.0% | |
| TGCAGATACTCCTCTTCTAA+AGG | - | chr5.2:15360687-15360706 | MS.gene82524:CDS | 40.0% | |
| ! | AGCTTGGTGGTATCTTCATA+TGG | - | chr5.2:15360566-15360585 | MS.gene82524:intron | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+CGG | - | chr5.2:15361206-15361225 | MS.gene82524:intron | 40.0% |
| !! | TTGCTTCATTTCTAGCTTGG+TGG | - | chr5.2:15360553-15360572 | MS.gene82524:intron | 40.0% |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.2:15361432-15361451 | None:intergenic | 45.0% | |
| CTAACTGTTGCAATTGCTGG+TGG | + | chr5.2:15361097-15361116 | None:intergenic | 45.0% | |
| GAGGTTACCACCAAGCAAAA+GGG | + | chr5.2:15361413-15361432 | None:intergenic | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.2:15360088-15360107 | MS.gene82524:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.2:15359528-15359547 | MS.gene82524:CDS | 45.0% | |
| TGAGGCTGCTGAGATTCTAA+AGG | - | chr5.2:15360639-15360658 | MS.gene82524:intron | 45.0% | |
| TGAGGTTACCACCAAGCAAA+AGG | + | chr5.2:15361414-15361433 | None:intergenic | 45.0% | |
| ! | CATACGAGAGTGCATTACTG+TGG | + | chr5.2:15360378-15360397 | None:intergenic | 45.0% |
| ACCAAGCAAAAGGGTGATGC+AGG | + | chr5.2:15361404-15361423 | None:intergenic | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.2:15360355-15360374 | None:intergenic | 50.0% | |
| CCAAGCAAAAGGGTGATGCA+GGG | + | chr5.2:15361403-15361422 | None:intergenic | 50.0% | |
| TGTGCCACACGTTTACTGTG+TGG | - | chr5.2:15359780-15359799 | MS.gene82524:intron | 50.0% | |
| ! | TGCATCACCCTTTTGCTTGG+TGG | - | chr5.2:15361403-15361422 | MS.gene82524:intron | 50.0% |
| GAGTTTCGGCATTCTCCCAG+TGG | - | chr5.2:15361543-15361562 | MS.gene82524:CDS | 55.0% | |
| GTGAAAACCGCGGCGAGTTT+CGG | - | chr5.2:15361529-15361548 | MS.gene82524:intron | 55.0% | |
| TTTCGGTTTCCTCTTCGGCG+CGG | - | chr5.2:15361211-15361230 | MS.gene82524:intron | 55.0% | |
| ! | CCCTGCATCACCCTTTTGCT+TGG | - | chr5.2:15361400-15361419 | MS.gene82524:intron | 55.0% |
| ! | CTTGGTGGTAACCTCACTGC+AGG | - | chr5.2:15361418-15361437 | MS.gene82524:intron | 55.0% |
| GAGAATGCCGAAACTCGCCG+CGG | + | chr5.2:15361539-15361558 | None:intergenic | 60.0% | |
| TCGGCGCGGTTGCATGGTTA+AGG | - | chr5.2:15361225-15361244 | MS.gene82524:intron | 60.0% | |
| ACCATGCAACCGCGCCGAAG+AGG | + | chr5.2:15361223-15361242 | None:intergenic | 65.0% | |
| TCCTCTTCGGCGCGGTTGCA+TGG | - | chr5.2:15361219-15361238 | MS.gene82524:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 15359469 | 15361625 | 15359469 | ID=MS.gene82524 |
| chr5.2 | mRNA | 15359469 | 15361625 | 15359469 | ID=MS.gene82524.t1;Parent=MS.gene82524 |
| chr5.2 | exon | 15361537 | 15361625 | 15361537 | ID=MS.gene82524.t1.exon1;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15361537 | 15361625 | 15361537 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15360904 | 15361028 | 15360904 | ID=MS.gene82524.t1.exon2;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15360904 | 15361028 | 15360904 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15360680 | 15360801 | 15360680 | ID=MS.gene82524.t1.exon3;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15360680 | 15360801 | 15360680 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15360314 | 15360526 | 15360314 | ID=MS.gene82524.t1.exon4;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15360314 | 15360526 | 15360314 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15359983 | 15360102 | 15359983 | ID=MS.gene82524.t1.exon5;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15359983 | 15360102 | 15359983 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15359785 | 15359885 | 15359785 | ID=MS.gene82524.t1.exon6;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15359785 | 15359885 | 15359785 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| chr5.2 | exon | 15359469 | 15359707 | 15359469 | ID=MS.gene82524.t1.exon7;Parent=MS.gene82524.t1 |
| chr5.2 | CDS | 15359469 | 15359707 | 15359469 | ID=cds.MS.gene82524.t1;Parent=MS.gene82524.t1 |
| Gene Sequence |
| Protein sequence |
