Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65344.t1 | XP_003612402.1 | 96.6 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 3.80E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65344.t1 | Q9FKY4 | 54.4 | 379 | 148 | 2 | 1 | 379 | 1 | 354 | 7.2e-113 | 408.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65344.t1 | A0A072UEV2 | 96.6 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 2.7e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82524 | MS.gene65344 | PPI |
| MS.gene65344 | MS.gene23822 | PPI |
| MS.gene65344 | MS.gene86525 | PPI |
| MS.gene65344 | MS.gene64908 | PPI |
| MS.gene72674 | MS.gene65344 | PPI |
| MS.gene64906 | MS.gene65344 | PPI |
| MS.gene65344 | MS.gene066493 | PPI |
| MS.gene65344 | MS.gene64907 | PPI |
| MS.gene65344 | MS.gene72673 | PPI |
| MS.gene65344 | MS.gene69976 | PPI |
| MS.gene65344 | MS.gene86523 | PPI |
| MS.gene65344 | MS.gene86524 | PPI |
| MS.gene65344 | MS.gene72672 | PPI |
| MS.gene99561 | MS.gene65344 | PPI |
| MS.gene69976 | MS.gene65344 | PPI |
| MS.gene65344 | MS.gene82524 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65344.t1 | MTR_5g024640 | 96.570 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 0.0 | 740 |
| MS.gene65344.t1 | MTR_5g024640 | 96.570 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 0.0 | 740 |
| MS.gene65344.t1 | MTR_5g024660 | 89.446 | 379 | 40 | 0 | 1 | 379 | 1 | 379 | 0.0 | 696 |
| MS.gene65344.t1 | MTR_5g024640 | 96.000 | 300 | 12 | 0 | 1 | 300 | 1 | 300 | 0.0 | 584 |
| MS.gene65344.t1 | MTR_5g024520 | 74.406 | 379 | 31 | 2 | 1 | 379 | 1 | 313 | 0.0 | 541 |
| MS.gene65344.t1 | MTR_5g024560 | 95.982 | 224 | 9 | 0 | 156 | 379 | 35 | 258 | 5.16e-156 | 441 |
| MS.gene65344.t1 | MTR_8g073160 | 57.520 | 379 | 120 | 4 | 1 | 379 | 1 | 338 | 8.87e-155 | 441 |
| MS.gene65344.t1 | MTR_5g024580 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 7.14e-104 | 303 |
| MS.gene65344.t1 | MTR_5g024970 | 40.617 | 389 | 208 | 6 | 1 | 379 | 1 | 376 | 3.90e-103 | 310 |
| MS.gene65344.t1 | MTR_5g024970 | 40.617 | 389 | 208 | 6 | 1 | 379 | 1 | 376 | 1.52e-102 | 309 |
| MS.gene65344.t1 | MTR_5g024970 | 38.221 | 416 | 207 | 7 | 1 | 379 | 1 | 403 | 5.10e-97 | 296 |
| MS.gene65344.t1 | MTR_8g072560 | 39.332 | 389 | 199 | 5 | 1 | 379 | 1 | 362 | 5.00e-95 | 290 |
| MS.gene65344.t1 | MTR_8g006780 | 38.187 | 364 | 209 | 4 | 1 | 361 | 1 | 351 | 6.81e-82 | 256 |
| MS.gene65344.t1 | MTR_5g024970 | 40.506 | 316 | 166 | 5 | 74 | 379 | 9 | 312 | 1.08e-81 | 254 |
| MS.gene65344.t1 | MTR_5g024970 | 39.329 | 328 | 176 | 6 | 1 | 318 | 1 | 315 | 7.19e-80 | 248 |
| MS.gene65344.t1 | MTR_8g006775 | 33.684 | 380 | 246 | 3 | 1 | 379 | 1 | 375 | 9.50e-75 | 238 |
| MS.gene65344.t1 | MTR_5g024970 | 38.710 | 310 | 167 | 6 | 1 | 300 | 1 | 297 | 1.36e-72 | 229 |
| MS.gene65344.t1 | MTR_5g024970 | 40.329 | 243 | 128 | 4 | 1 | 239 | 1 | 230 | 2.11e-60 | 196 |
| MS.gene65344.t1 | MTR_5g024970 | 37.184 | 277 | 159 | 4 | 1 | 275 | 1 | 264 | 5.39e-60 | 195 |
| MS.gene65344.t1 | MTR_7g074190 | 32.520 | 369 | 231 | 5 | 7 | 374 | 26 | 377 | 4.94e-53 | 181 |
| MS.gene65344.t1 | MTR_5g054950 | 29.293 | 396 | 251 | 9 | 7 | 377 | 17 | 408 | 7.05e-52 | 179 |
| MS.gene65344.t1 | MTR_8g006780 | 40.991 | 222 | 124 | 3 | 1 | 222 | 1 | 215 | 1.15e-51 | 176 |
| MS.gene65344.t1 | MTR_8g006780 | 39.844 | 128 | 72 | 2 | 236 | 361 | 157 | 281 | 1.92e-14 | 73.9 |
| MS.gene65344.t1 | MTR_1g108390 | 26.866 | 402 | 258 | 7 | 7 | 377 | 19 | 415 | 3.45e-46 | 164 |
| MS.gene65344.t1 | MTR_5g024530 | 93.056 | 72 | 5 | 0 | 1 | 72 | 1 | 72 | 2.45e-38 | 135 |
| MS.gene65344.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 8.32e-14 | 68.6 |
| MS.gene65344.t1 | MTR_5g024960 | 50.794 | 63 | 31 | 0 | 317 | 379 | 51 | 113 | 9.13e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65344.t1 | AT5G65980 | 54.354 | 379 | 148 | 2 | 1 | 379 | 1 | 354 | 7.55e-148 | 423 |
| MS.gene65344.t1 | AT5G65980 | 54.354 | 379 | 148 | 2 | 1 | 379 | 1 | 354 | 1.24e-147 | 423 |
| MS.gene65344.t1 | AT2G17500 | 54.068 | 381 | 147 | 5 | 1 | 379 | 1 | 355 | 5.92e-147 | 422 |
| MS.gene65344.t1 | AT2G17500 | 54.068 | 381 | 147 | 5 | 1 | 379 | 1 | 355 | 5.92e-147 | 422 |
| MS.gene65344.t1 | AT2G17500 | 54.068 | 381 | 147 | 5 | 1 | 379 | 1 | 355 | 5.92e-147 | 422 |
| MS.gene65344.t1 | AT2G17500 | 54.068 | 381 | 147 | 5 | 1 | 379 | 1 | 355 | 5.92e-147 | 422 |
| MS.gene65344.t1 | AT1G76520 | 37.337 | 383 | 200 | 7 | 3 | 379 | 1 | 349 | 6.04e-91 | 279 |
| MS.gene65344.t1 | AT1G76520 | 37.337 | 383 | 200 | 7 | 3 | 379 | 1 | 349 | 6.04e-91 | 279 |
| MS.gene65344.t1 | AT1G20925 | 36.316 | 380 | 204 | 7 | 1 | 379 | 89 | 431 | 1.68e-84 | 265 |
| MS.gene65344.t1 | AT1G76530 | 36.041 | 394 | 217 | 7 | 1 | 379 | 1 | 374 | 1.32e-76 | 243 |
| MS.gene65344.t1 | AT1G76530 | 36.041 | 394 | 217 | 7 | 1 | 379 | 1 | 374 | 1.32e-76 | 243 |
| MS.gene65344.t1 | AT5G01990 | 34.054 | 370 | 231 | 7 | 7 | 374 | 28 | 386 | 8.43e-59 | 197 |
| MS.gene65344.t1 | AT1G71090 | 27.506 | 389 | 256 | 7 | 12 | 377 | 21 | 406 | 3.95e-46 | 164 |
| MS.gene65344.t1 | AT1G76530 | 44.643 | 168 | 90 | 2 | 1 | 168 | 1 | 165 | 1.16e-45 | 160 |
Find 66 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGTCTTTA+TGG | 0.140203 | 5.2:+15330336 | None:intergenic |
| AAGCAGTTCATTGAGATTTA+AGG | 0.141774 | 5.2:-15330377 | MS.gene65344:CDS |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.2:-15331136 | MS.gene65344:CDS |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.2:+15329755 | None:intergenic |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.2:+15331469 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.2:+15331076 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.2:-15331532 | MS.gene65344:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.2:-15331521 | MS.gene65344:CDS |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.2:-15329740 | MS.gene65344:CDS |
| TGGTTAAGGAACTTAATAAT+TGG | 0.345062 | 5.2:-15329788 | MS.gene65344:CDS |
| ATTATTGCTGCCTGTTCATC+AGG | 0.346771 | 5.2:-15331052 | MS.gene65344:intron |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.2:-15330735 | MS.gene65344:CDS |
| CCTTTCTCATCACATATTGC+TGG | 0.361228 | 5.2:+15330800 | None:intergenic |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.2:+15329741 | None:intergenic |
| TTGGCGCGGTTGCATGGTTA+AGG | 0.374002 | 5.2:-15329802 | MS.gene65344:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.2:+15331145 | None:intergenic |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.379155 | 5.2:+15330325 | None:intergenic |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.2:+15329393 | None:intergenic |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.2:+15331544 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.2:+15329495 | None:intergenic |
| AAAATCACATACCTTGTTCA+AGG | 0.399892 | 5.2:+15331453 | None:intergenic |
| TCTCACAATACCTGATGAAC+AGG | 0.406141 | 5.2:+15331042 | None:intergenic |
| TCCTCTTTGGCGCGGTTGCA+TGG | 0.411798 | 5.2:-15329808 | MS.gene65344:CDS |
| TCTTATAGTTTGAAAAGTAT+AGG | 0.432637 | 5.2:+15330399 | None:intergenic |
| GAACTCACTATTGAAATTGC+TGG | 0.432984 | 5.2:+15329926 | None:intergenic |
| CTTGGTGGTAACCTCACTGC+TGG | 0.446908 | 5.2:-15329585 | MS.gene65344:CDS |
| CAAACATCACGTGCACCAAA+TGG | 0.448319 | 5.2:+15330773 | None:intergenic |
| CTTTAATTAACCAGGAAACA+TGG | 0.454338 | 5.2:-15330846 | MS.gene65344:intron |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.2:+15329435 | None:intergenic |
| GTGAAAGCCGCTGCTAGTTA+CGG | 0.455271 | 5.2:-15329474 | MS.gene65344:CDS |
| TGTAGATACTCCCCTTCTAA+AGG | 0.458680 | 5.2:-15330302 | MS.gene65344:CDS |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.2:-15331533 | MS.gene65344:CDS |
| GTAGATACTCCCCTTCTAAA+GGG | 0.470111 | 5.2:-15330301 | MS.gene65344:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.474607 | 5.2:+15330815 | None:intergenic |
| TGCTAGTTACGGCTTTCTCC+CGG | 0.474979 | 5.2:-15329463 | MS.gene65344:CDS |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.2:-15331281 | MS.gene65344:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.488484 | 5.2:-15331133 | MS.gene65344:CDS |
| GATGAGAAAGGAGGTCCATT+TGG | 0.502562 | 5.2:-15330788 | MS.gene65344:CDS |
| ACACCAAACAAAGATCTTGA+AGG | 0.506701 | 5.2:-15330328 | MS.gene65344:CDS |
| CTTTCTCATCACATATTGCT+GGG | 0.510924 | 5.2:+15330801 | None:intergenic |
| TAAAATTCCTCCAATTAAGA+AGG | 0.522026 | 5.2:+15331126 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.2:-15329436 | MS.gene65344:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.2:-15331154 | MS.gene65344:CDS |
| TACTGAAACAAAGGATCCAC+CGG | 0.528425 | 5.2:+15329444 | None:intergenic |
| GGATATTAGTAAAATTACTA+AGG | 0.533486 | 5.2:-15331099 | MS.gene65344:CDS |
| ACTAAGGCCTAATTTGAAAG+TGG | 0.537496 | 5.2:-15331083 | MS.gene65344:CDS |
| TTTAATTAACCAGGAAACAT+GGG | 0.548770 | 5.2:-15330845 | MS.gene65344:intron |
| ACCATGCAACCGCGCCAAAG+AGG | 0.556288 | 5.2:+15329807 | None:intergenic |
| TCAGTCTAATGAATCGAAGA+AGG | 0.556988 | 5.2:-15330017 | MS.gene65344:CDS |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.564939 | 5.2:-15331079 | MS.gene65344:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.573088 | 5.2:+15331318 | None:intergenic |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.2:-15329739 | MS.gene65344:intron |
| CCAGCAATATGTGATGAGAA+AGG | 0.578816 | 5.2:-15330800 | MS.gene65344:CDS |
| TGAAAACACCGTGATAGAAG+TGG | 0.595584 | 5.2:-15330269 | MS.gene65344:CDS |
| CAACGGTGCCACTTCTATCA+CGG | 0.595633 | 5.2:+15330261 | None:intergenic |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.2:+15329396 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.2:+15329540 | None:intergenic |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.2:-15329530 | MS.gene65344:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.2:+15329603 | None:intergenic |
| TAGTTACGGCTTTCTCCCGG+TGG | 0.641389 | 5.2:-15329460 | MS.gene65344:CDS |
| GAGAAAGCCGTAACTAGCAG+CGG | 0.645019 | 5.2:+15329467 | None:intergenic |
| CTCACTATTGAAATTGCTGG+TGG | 0.668427 | 5.2:+15329929 | None:intergenic |
| GAGTCTTCAATATAACTCAA+CGG | 0.668737 | 5.2:+15330244 | None:intergenic |
| GCAATATGTGATGAGAAAGG+AGG | 0.713358 | 5.2:-15330797 | MS.gene65344:CDS |
| ACTGAAACAAAGGATCCACC+GGG | 0.716942 | 5.2:+15329445 | None:intergenic |
| ATGATTTCAAGCCAGCAGTG+AGG | 0.732037 | 5.2:+15329574 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACTCAAATTATTAT+TGG | + | chr5.2:15330361-15330380 | None:intergenic | 10.0% |
| !!! | ATGTTTCTAAAATATATTTT+TGG | - | chr5.2:15329964-15329983 | MS.gene65344:CDS | 10.0% |
| !!! | TTTTTATGAAGAAATTAATT+AGG | + | chr5.2:15331273-15331292 | None:intergenic | 10.0% |
| !! | AATAATAGATCATTTAATGT+TGG | - | chr5.2:15329758-15329777 | MS.gene65344:CDS | 15.0% |
| !! | CAAAATATAAAAATGTGAAT+AGG | + | chr5.2:15330288-15330307 | None:intergenic | 15.0% |
| !!! | AATACTGTTTTGTTTTTTTT+TGG | - | chr5.2:15329602-15329621 | MS.gene65344:CDS | 15.0% |
| !!! | GTTAAAATTTTCTAATTCAT+CGG | - | chr5.2:15330842-15330861 | MS.gene65344:intron | 15.0% |
| !!! | TGCAATAGTTTTTTTTTAAT+CGG | - | chr5.2:15330795-15330814 | MS.gene65344:CDS | 15.0% |
| !!! | TTAAAATTTTCTAATTCATC+GGG | - | chr5.2:15330843-15330862 | MS.gene65344:intron | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.2:15329665-15329684 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.2:15331331-15331350 | None:intergenic | 20.0% |
| !! | ATAAGAGTTAAAGGAATTAA+AGG | + | chr5.2:15330882-15330901 | None:intergenic | 20.0% |
| !! | GGATATTAGTAAAATTACTA+AGG | - | chr5.2:15329881-15329900 | MS.gene65344:intron | 20.0% |
| !! | GTAATTAACAACTTAATTAC+CGG | + | chr5.2:15329793-15329812 | None:intergenic | 20.0% |
| !! | TGTTAATTACACATTTATAC+AGG | - | chr5.2:15329803-15329822 | MS.gene65344:CDS | 20.0% |
| !!! | TCTTATAGTTTGAAAAGTAT+AGG | + | chr5.2:15330584-15330603 | None:intergenic | 20.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.2:15331488-15331507 | None:intergenic | 25.0% |
| ! | AGCAAGAAAGAAGATAAAAA+AGG | + | chr5.2:15331080-15331099 | None:intergenic | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | chr5.2:15329708-15329727 | MS.gene65344:intron | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.2:15330126-15330145 | MS.gene65344:intron | 25.0% |
| ! | GCAAGAAAGAAGATAAAAAA+GGG | + | chr5.2:15331079-15331098 | None:intergenic | 25.0% |
| ! | GTGAAGATCAAATATTTAAC+AGG | - | chr5.2:15329554-15329573 | MS.gene65344:CDS | 25.0% |
| ! | TAAAATTCCTCCAATTAAGA+AGG | + | chr5.2:15329857-15329876 | None:intergenic | 25.0% |
| ! | TAATTACACATTTATACAGG+TGG | - | chr5.2:15329806-15329825 | MS.gene65344:CDS | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.2:15331192-15331211 | MS.gene65344:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.2:15330135-15330154 | MS.gene65344:intron | 25.0% |
| !! | TTCTTAATTGGAGGAATTTT+AGG | - | chr5.2:15329856-15329875 | MS.gene65344:intron | 25.0% |
| !!! | AATTTTTTTCGATTGTAGCT+TGG | - | chr5.2:15330541-15330560 | MS.gene65344:intron | 25.0% |
| !!! | TTATTCCATGATCAGTTTTT+TGG | - | chr5.2:15331147-15331166 | MS.gene65344:CDS | 25.0% |
| AAAATCACATACCTTGTTCA+AGG | + | chr5.2:15329530-15329549 | None:intergenic | 30.0% | |
| AACTCAATTCTTTGCAGAAA+TGG | - | chr5.2:15331347-15331366 | MS.gene65344:intron | 30.0% | |
| AAGCAGTTCATTGAGATTTA+AGG | - | chr5.2:15330603-15330622 | MS.gene65344:intron | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.2:15329439-15329458 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.2:15331548-15331567 | None:intergenic | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.2:15330168-15330187 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.2:15329699-15329718 | MS.gene65344:intron | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.2:15330134-15330153 | MS.gene65344:intron | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | chr5.2:15331305-15331324 | None:intergenic | 30.0% | |
| GAGTCTTCAATATAACTCAA+CGG | + | chr5.2:15330739-15330758 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.2:15329514-15329533 | None:intergenic | 30.0% | |
| TTTAACAAAGCAGAGAAGAA+AGG | + | chr5.2:15331104-15331123 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.2:15330658-15330677 | None:intergenic | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.2:15331241-15331260 | MS.gene65344:intron | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.2:15329500-15329519 | MS.gene65344:CDS | 30.0% |
| ! | ATTGCATAATTTAGCTCCAA+AGG | + | chr5.2:15330781-15330800 | None:intergenic | 30.0% |
| ! | CCTTTAACTCTTATTTCAGA+CGG | - | chr5.2:15330888-15330907 | MS.gene65344:intron | 30.0% |
| ! | TAGAGACTTTAAGGACTATT+TGG | + | chr5.2:15331296-15331315 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.2:15331544-15331563 | MS.gene65344:CDS | 30.0% |
| !! | ATCTTTGTTTGGTGTCTTTA+TGG | + | chr5.2:15330647-15330666 | None:intergenic | 30.0% |
| !! | TAATTGGAGGAATTTTAGGA+TGG | - | chr5.2:15329860-15329879 | MS.gene65344:intron | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.2:15329516-15329535 | MS.gene65344:CDS | 30.0% |
| AAGAATACAACCTGCAAAAC+AGG | + | chr5.2:15329632-15329651 | None:intergenic | 35.0% | |
| ACACCAAACAAAGATCTTGA+AGG | - | chr5.2:15330652-15330671 | MS.gene65344:intron | 35.0% | |
| ACTAAGGCCTAATTTGAAAG+TGG | - | chr5.2:15329897-15329916 | MS.gene65344:intron | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.2:15329907-15329926 | None:intergenic | 35.0% | |
| CCTGAAAATCAAGATAGTTG+AGG | + | chr5.2:15330930-15330949 | None:intergenic | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.2:15330245-15330264 | MS.gene65344:CDS | 35.0% | |
| CTTTCTCATCACATATTGCT+GGG | + | chr5.2:15330182-15330201 | None:intergenic | 35.0% | |
| GAACTCACTATTGAAATTGC+TGG | + | chr5.2:15331057-15331076 | None:intergenic | 35.0% | |
| GGAAACCAAAAAACTGATCA+TGG | + | chr5.2:15331155-15331174 | None:intergenic | 35.0% | |
| TCAGTCTAATGAATCGAAGA+AGG | - | chr5.2:15330963-15330982 | MS.gene65344:intron | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.2:15331450-15331469 | MS.gene65344:intron | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.2:15329826-15329845 | MS.gene65344:intron | 35.0% | |
| TGTGTCTTCTATCAGAAGTA+TGG | - | chr5.2:15330458-15330477 | MS.gene65344:intron | 35.0% | |
| TTAATGTTGGTCATGTTAGC+CGG | - | chr5.2:15329771-15329790 | MS.gene65344:CDS | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.2:15329447-15329466 | MS.gene65344:CDS | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.2:15331240-15331259 | MS.gene65344:intron | 35.0% |
| ! | CCGTCTGAAATAAGAGTTAA+AGG | + | chr5.2:15330891-15330910 | None:intergenic | 35.0% |
| ! | CCTCAACTATCTTGATTTTC+AGG | - | chr5.2:15330927-15330946 | MS.gene65344:intron | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.2:15329448-15329467 | MS.gene65344:CDS | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.2:15331228-15331247 | None:intergenic | 35.0% |
| !! | ATCGTCTTTTCCCTTTAGAA+GGG | + | chr5.2:15330692-15330711 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.2:15331242-15331261 | None:intergenic | 35.0% |
| !! | TTTTGTGCAACTTTTGGAAG+TGG | - | chr5.2:15329405-15329424 | MS.gene65344:CDS | 35.0% |
| !!! | CAGTTTTTTGGTTTCCTCTT+TGG | - | chr5.2:15331159-15331178 | MS.gene65344:intron | 35.0% |
| !!! | TTTTGGTTTACCTGTTTTGC+AGG | - | chr5.2:15329619-15329638 | MS.gene65344:CDS | 35.0% |
| !!! | TTTTTTCGATTGTAGCTTGG+TGG | - | chr5.2:15330544-15330563 | MS.gene65344:intron | 35.0% |
| AAGCCAAATCGTAAGACCTT+TGG | - | chr5.2:15330762-15330781 | MS.gene65344:CDS | 40.0% | |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.2:15329838-15329857 | None:intergenic | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.2:15329901-15329920 | MS.gene65344:intron | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.2:15331443-15331462 | None:intergenic | 40.0% | |
| ATTATTGCTGCCTGTTCATC+AGG | - | chr5.2:15329928-15329947 | MS.gene65344:intron | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.2:15330253-15330272 | MS.gene65344:CDS | 40.0% | |
| CCAGCAATATGTGATGAGAA+AGG | - | chr5.2:15330180-15330199 | MS.gene65344:intron | 40.0% | |
| CCTTTCTCATCACATATTGC+TGG | + | chr5.2:15330183-15330202 | None:intergenic | 40.0% | |
| CTCACTATTGAAATTGCTGG+TGG | + | chr5.2:15331054-15331073 | None:intergenic | 40.0% | |
| GCAATATGTGATGAGAAAGG+AGG | - | chr5.2:15330183-15330202 | MS.gene65344:intron | 40.0% | |
| GTAGATACTCCCCTTCTAAA+GGG | - | chr5.2:15330679-15330698 | MS.gene65344:intron | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.2:15329844-15329863 | MS.gene65344:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+CGG | + | chr5.2:15331539-15331558 | None:intergenic | 40.0% | |
| TCTCACAATACCTGATGAAC+AGG | + | chr5.2:15329941-15329960 | None:intergenic | 40.0% | |
| TGAAAACACCGTGATAGAAG+TGG | - | chr5.2:15330711-15330730 | MS.gene65344:intron | 40.0% | |
| TGTAGATACTCCCCTTCTAA+AGG | - | chr5.2:15330678-15330697 | MS.gene65344:intron | 40.0% | |
| ! | CATCGTCTTTTCCCTTTAGA+AGG | + | chr5.2:15330693-15330712 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.2:15331473-15331492 | MS.gene65344:CDS | 40.0% |
| !! | TCGTCTTTTCCCTTTAGAAG+GGG | + | chr5.2:15330691-15330710 | None:intergenic | 40.0% |
| ACTGAAACAAAGGATCCACC+GGG | + | chr5.2:15331538-15331557 | None:intergenic | 45.0% | |
| ATGATTTCAAGCCAGCAGTG+AGG | + | chr5.2:15331409-15331428 | None:intergenic | 45.0% | |
| CAAACATCACGTGCACCAAA+TGG | + | chr5.2:15330210-15330229 | None:intergenic | 45.0% | |
| GACACATCTAGTGTCCGATA+TGG | + | chr5.2:15330444-15330463 | None:intergenic | 45.0% | |
| GATGAGAAAGGAGGTCCATT+TGG | - | chr5.2:15330192-15330211 | MS.gene65344:intron | 45.0% | |
| GCTCCAAAGGTCTTACGATT+TGG | + | chr5.2:15330768-15330787 | None:intergenic | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.2:15329847-15329866 | MS.gene65344:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.2:15329459-15329478 | MS.gene65344:CDS | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.2:15331380-15331399 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.2:15331377-15331396 | MS.gene65344:intron | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.2:15331380-15331399 | MS.gene65344:intron | 45.0% |
| !! | AGCTTGGTGGCATTTTCGTA+TGG | - | chr5.2:15330557-15330576 | MS.gene65344:intron | 45.0% |
| !! | TGAAGCACTGATACAGACAC+CGG | - | chr5.2:15330313-15330332 | MS.gene65344:CDS | 45.0% |
| !!! | TTTTGGTTTCCTCTTTGGCG+CGG | - | chr5.2:15331164-15331183 | MS.gene65344:intron | 45.0% |
| CGCCTATGTCAGTGCCATAT+CGG | - | chr5.2:15330427-15330446 | MS.gene65344:intron | 50.0% | |
| GAGAAAGCCGTAACTAGCAG+CGG | + | chr5.2:15331516-15331535 | None:intergenic | 50.0% | |
| GGCAAGTTTCCCATGTTTCC+TGG | + | chr5.2:15330147-15330166 | None:intergenic | 50.0% | |
| GTGAAAGCCGCTGCTAGTTA+CGG | - | chr5.2:15331506-15331525 | MS.gene65344:CDS | 50.0% | |
| TGCTAGTTACGGCTTTCTCC+CGG | - | chr5.2:15331517-15331536 | MS.gene65344:CDS | 50.0% | |
| !! | CAACGGTGCCACTTCTATCA+CGG | + | chr5.2:15330722-15330741 | None:intergenic | 50.0% |
| !! | GTCCGATATGGCACTGACAT+AGG | + | chr5.2:15330432-15330451 | None:intergenic | 50.0% |
| CGACATGTCAGTGTCGTGTC+CGG | + | chr5.2:15330335-15330354 | None:intergenic | 55.0% | |
| CGGACACGACACTGACATGT+CGG | - | chr5.2:15330333-15330352 | MS.gene65344:CDS | 55.0% | |
| TAGTTACGGCTTTCTCCCGG+TGG | - | chr5.2:15331520-15331539 | MS.gene65344:CDS | 55.0% | |
| TTGGCGCGGTTGCATGGTTA+AGG | - | chr5.2:15331178-15331197 | MS.gene65344:intron | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+TGG | - | chr5.2:15331395-15331414 | MS.gene65344:intron | 55.0% |
| ACCATGCAACCGCGCCAAAG+AGG | + | chr5.2:15331176-15331195 | None:intergenic | 60.0% | |
| TCCTCTTTGGCGCGGTTGCA+TGG | - | chr5.2:15331172-15331191 | MS.gene65344:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 15329400 | 15331602 | 15329400 | ID=MS.gene65344 |
| chr5.2 | mRNA | 15329400 | 15331602 | 15329400 | ID=MS.gene65344.t1;Parent=MS.gene65344 |
| chr5.2 | exon | 15331465 | 15331602 | 15331465 | ID=MS.gene65344.t1.exon1;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15331465 | 15331602 | 15331465 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15331282 | 15331361 | 15331282 | ID=MS.gene65344.t1.exon2;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15331282 | 15331361 | 15331282 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15331053 | 15331177 | 15331053 | ID=MS.gene65344.t1.exon3;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15331053 | 15331177 | 15331053 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15330733 | 15330854 | 15330733 | ID=MS.gene65344.t1.exon4;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15330733 | 15330854 | 15330733 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15330231 | 15330443 | 15330231 | ID=MS.gene65344.t1.exon5;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15330231 | 15330443 | 15330231 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15329934 | 15330053 | 15329934 | ID=MS.gene65344.t1.exon6;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15329934 | 15330053 | 15329934 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15329740 | 15329840 | 15329740 | ID=MS.gene65344.t1.exon7;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15329740 | 15329840 | 15329740 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| chr5.2 | exon | 15329400 | 15329638 | 15329400 | ID=MS.gene65344.t1.exon8;Parent=MS.gene65344.t1 |
| chr5.2 | CDS | 15329400 | 15329638 | 15329400 | ID=cds.MS.gene65344.t1;Parent=MS.gene65344.t1 |
| Gene Sequence |
| Protein sequence |
