AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99561


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99561.t1 MTR_8g073160 89.901 406 14 2 1 406 1 379 0.0 720
MS.gene99561.t1 MTR_5g024660 68.810 420 117 2 1 406 1 420 0.0 592
MS.gene99561.t1 MTR_5g024640 65.714 420 130 2 1 406 1 420 0.0 575
MS.gene99561.t1 MTR_5g024640 63.947 380 123 2 1 366 1 380 0.0 512
MS.gene99561.t1 MTR_5g024520 59.360 406 113 3 1 406 1 354 6.90e-163 461
MS.gene99561.t1 MTR_5g024640 60.667 300 104 2 1 286 1 300 4.38e-133 384
MS.gene99561.t1 MTR_5g024970 41.805 421 226 6 1 406 1 417 9.08e-114 339
MS.gene99561.t1 MTR_5g024560 60.000 265 92 2 156 406 35 299 2.93e-110 326
MS.gene99561.t1 MTR_8g072560 39.655 406 237 5 1 403 1 401 3.26e-108 324
MS.gene99561.t1 MTR_5g024970 39.509 448 225 7 1 406 1 444 3.49e-108 326
MS.gene99561.t1 MTR_5g024970 40.576 382 208 6 1 367 1 378 6.32e-96 292
MS.gene99561.t1 MTR_5g024970 42.241 348 183 5 74 406 9 353 4.69e-94 286
MS.gene99561.t1 MTR_8g006775 35.577 416 252 4 1 403 1 413 6.83e-90 278
MS.gene99561.t1 MTR_8g006780 39.066 407 244 3 1 403 1 407 5.69e-89 275
MS.gene99561.t1 MTR_5g024580 70.482 166 49 0 1 166 1 166 1.62e-81 248
MS.gene99561.t1 MTR_5g024970 40.125 319 172 6 1 304 1 315 9.76e-74 233
MS.gene99561.t1 MTR_5g024970 39.203 301 164 6 1 286 1 297 1.61e-65 212
MS.gene99561.t1 MTR_7g074190 33.250 400 256 7 2 397 21 413 3.74e-59 198
MS.gene99561.t1 MTR_1g108390 28.118 441 267 8 2 397 14 449 2.73e-56 192
MS.gene99561.t1 MTR_5g024970 44.792 192 103 2 1 190 1 191 4.26e-55 183
MS.gene99561.t1 MTR_5g024970 44.792 192 103 2 1 190 1 191 9.98e-55 182
MS.gene99561.t1 MTR_5g054950 26.914 431 272 8 6 397 16 442 2.37e-52 181
MS.gene99561.t1 MTR_8g006780 41.667 156 91 0 1 156 1 156 1.83e-40 147
MS.gene99561.t1 MTR_8g006780 45.399 163 89 0 241 403 175 337 2.18e-29 117
MS.gene99561.t1 MTR_5g024960 45.631 103 56 0 304 406 52 154 1.89e-27 107
MS.gene99561.t1 MTR_5g024530 65.714 70 24 0 1 70 1 70 1.53e-23 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99561.t1 AT5G65980 55.419 406 170 3 1 406 1 395 1.79e-161 459
MS.gene99561.t1 AT2G17500 51.980 404 180 4 1 402 1 392 4.61e-157 448
MS.gene99561.t1 AT2G17500 51.980 404 180 4 1 402 1 392 4.61e-157 448
MS.gene99561.t1 AT2G17500 51.980 404 180 4 1 402 1 392 4.61e-157 448
MS.gene99561.t1 AT2G17500 51.980 404 180 4 1 402 1 392 4.61e-157 448
MS.gene99561.t1 AT5G65980 54.472 369 157 3 1 369 1 358 4.38e-144 414
MS.gene99561.t1 AT1G76520 41.076 409 212 6 1 403 2 387 5.47e-111 331
MS.gene99561.t1 AT1G76520 41.076 409 212 6 1 403 2 387 5.47e-111 331
MS.gene99561.t1 AT1G20925 40.695 403 217 5 1 403 89 469 2.35e-110 332
MS.gene99561.t1 AT1G76530 38.679 424 227 6 1 403 1 412 7.11e-93 285
MS.gene99561.t1 AT1G76530 38.679 424 227 6 1 403 1 412 7.11e-93 285
MS.gene99561.t1 AT5G01990 31.281 406 263 7 2 397 23 422 1.96e-57 194
MS.gene99561.t1 AT1G71090 27.896 423 263 7 13 397 22 440 1.19e-54 187
MS.gene99561.t1 AT1G76530 44.805 154 84 1 1 154 1 153 2.40e-41 149

Find 85 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGACTCACCTTCTTATT+TGG 0.108532 8.3:-29387817 MS.gene99561:CDS
CACATAAAAGACTTGCTATT+TGG 0.201172 8.3:+29386371 None:intergenic
TTATTTCATGATCAGTATTT+AGG 0.219920 8.3:-29386190 MS.gene99561:intron
GAGCATCTTGTCCAATTATT+AGG 0.223124 8.3:+29386134 None:intergenic
GGTGAAATATAAGGCATTTA+AGG 0.232295 8.3:-29386633 MS.gene99561:CDS
CAGTATTTAGGTTTCCTCTT+TGG 0.244158 8.3:-29386178 MS.gene99561:CDS
GCTTCTATGATCAGGAAATA+TGG 0.247255 8.3:-29386916 MS.gene99561:intron
ATAAGTAGGACTTGAATAAT+TGG 0.250424 8.3:+29388436 None:intergenic
ACTCTAAGGAACCTAATAAT+TGG 0.257337 8.3:-29386145 MS.gene99561:CDS
TTCTTATTTGGAGGGATCCT+TGG 0.307040 8.3:-29387805 MS.gene99561:CDS
ACAAAGTTCGGTGAAATATA+AGG 0.321958 8.3:-29386642 MS.gene99561:CDS
GTTAAAGCGGCTGCAAATTT+AGG 0.336331 8.3:-29385572 MS.gene99561:CDS
TAAGTAGGACTTGAATAATT+GGG 0.339142 8.3:+29388437 None:intergenic
CAGCTATAGCACTCACTCTT+TGG 0.342513 8.3:-29385220 MS.gene99561:CDS
ATTATTGCTTCTTGTTCATC+AGG 0.344380 8.3:-29387733 MS.gene99561:intron
AGCTTGGTGGTATTTACATT+TGG 0.346362 8.3:-29386688 MS.gene99561:CDS
GCTTATATGTCAACTGACTA+TGG 0.347693 8.3:-29388400 MS.gene99561:CDS
ACTTTCTGATTACAGATTGC+AGG 0.352245 8.3:+29386870 None:intergenic
AGAAACACTCTTTGCAAAAC+TGG 0.352652 8.3:+29388016 None:intergenic
AGACCTTCCACTTTCATGTT+TGG 0.361956 8.3:+29387757 None:intergenic
GACTTACTAATATTCATTGC+AGG 0.379207 8.3:+29385491 None:intergenic
TATTTAGGTTTCCTCTTTGG+TGG 0.388227 8.3:-29386175 MS.gene99561:CDS
AATCAGAAAGTTACTCCATT+TGG 0.400391 8.3:-29386858 MS.gene99561:CDS
TTGGTGGAGTTAAAACTCTA+AGG 0.416436 8.3:-29386159 MS.gene99561:CDS
AATTTCATATACCTTGTGTA+AGG 0.421002 8.3:+29385773 None:intergenic
GAGTTTCTGCATTAGTATCA+AGG 0.438055 8.3:+29386579 None:intergenic
TAAGGTTGCCACCTAGCAAA+AGG 0.449383 8.3:+29385791 None:intergenic
CCAACTGATTCGACAAAGTT+CGG 0.449697 8.3:-29386654 MS.gene99561:CDS
CTTCTATGATCAGGAAATAT+GGG 0.452818 8.3:-29386915 MS.gene99561:intron
CAAGACTCCATTCAGTTGCT+AGG 0.456663 8.3:-29386097 MS.gene99561:CDS
TGTTAACTGTTGTAGCTTGG+TGG 0.460560 8.3:-29386701 MS.gene99561:intron
TAATATTCATTGCAGGTGGC+AGG 0.466987 8.3:+29385498 None:intergenic
CTCTTGATGATATGATATCA+TGG 0.468126 8.3:-29387995 MS.gene99561:intron
ATTAGTATCAAGGTCTGTAT+TGG 0.470789 8.3:+29386589 None:intergenic
TTTGGTCAACATTCCTCCTA+TGG 0.472028 8.3:-29385202 MS.gene99561:CDS
CAAGCATCGCGTGTACCAAA+TGG 0.476256 8.3:+29386843 None:intergenic
CAGCACCATAAGACCACAAA+AGG 0.477890 8.3:+29385243 None:intergenic
AAACTCACAGTAGCAATTGT+TGG 0.477998 8.3:+29386299 None:intergenic
AAGGTGAGTCCGATGTTAAC+GGG 0.481920 8.3:+29387826 None:intergenic
GTCCTACTTATAAGTGCAGT+TGG 0.485340 8.3:-29388424 MS.gene99561:CDS
GGACTCACCTTCTTATTTGG+AGG 0.489105 8.3:-29387814 MS.gene99561:CDS
ATTGCAGGGATGATTACAAC+TGG 0.496624 8.3:+29386885 None:intergenic
TGCAGAAACTCAACTTCTCA+AGG 0.501582 8.3:-29386567 MS.gene99561:CDS
TTGGTACAGTGGACAGAGCT+TGG 0.511412 8.3:+29386390 None:intergenic
CACATACCCTAGCAACTGAA+TGG 0.513887 8.3:+29386090 None:intergenic
CTTTCTGATTACAGATTGCA+GGG 0.516869 8.3:+29386871 None:intergenic
GAAGGTGAGTCCGATGTTAA+CGG 0.520405 8.3:+29387825 None:intergenic
CCGAACTTTGTCGAATCAGT+TGG 0.521570 8.3:+29386654 None:intergenic
GACTCACCTTCTTATTTGGA+GGG 0.521703 8.3:-29387813 MS.gene99561:CDS
TATTTGGAGGGATCCTTGGA+TGG 0.523750 8.3:-29387801 MS.gene99561:CDS
AAGACTCCATTCAGTTGCTA+GGG 0.530940 8.3:-29386096 MS.gene99561:intron
TCAACACATATTGAAACAAA+GGG 0.533251 8.3:+29385534 None:intergenic
ATCATCAAGTATCAAACCAT+TGG 0.534119 8.3:-29385654 MS.gene99561:CDS
GCTAAAGCCAAACATGAAAG+TGG 0.535468 8.3:-29387764 MS.gene99561:CDS
ATCAACACATATTGAAACAA+AGG 0.537421 8.3:+29385533 None:intergenic
ACATTATTTCTTTCAGAACA+TGG 0.541048 8.3:+29386327 None:intergenic
CTTTCGAAAATCATTGAACA+AGG 0.553730 8.3:-29388356 MS.gene99561:intron
CTCAAGGGAAATGACAATGT+TGG 0.557338 8.3:-29386551 MS.gene99561:CDS
AAGGATCCCTCCAAATAAGA+AGG 0.562391 8.3:+29387807 None:intergenic
AAACTGGCAAATATAAGTGC+AGG 0.570953 8.3:+29388032 None:intergenic
ATGACTCAGCTGTTTGATGT+AGG 0.572960 8.3:-29385287 MS.gene99561:CDS
ATTGAAACAAAGGGTCTAGA+GGG 0.573069 8.3:+29385543 None:intergenic
CTCCAACTGCACTTATAAGT+AGG 0.574039 8.3:+29388422 None:intergenic
CTTAAGATAATGACCATAGG+AGG 0.581597 8.3:+29385189 None:intergenic
TAGCAATGATGATACTAATG+AGG 0.582291 8.3:+29385630 None:intergenic
AAGTAGGACTTGAATAATTG+GGG 0.583437 8.3:+29388438 None:intergenic
TGGTTTATGCCCGTTAACAT+CGG 0.585974 8.3:-29387835 MS.gene99561:CDS
GCAGAAACTCAACTTCTCAA+GGG 0.587651 8.3:-29386566 MS.gene99561:CDS
TATTGAAACAAAGGGTCTAG+AGG 0.589046 8.3:+29385542 None:intergenic
CAGGGATGATTACAACTGGA+AGG 0.596650 8.3:+29386889 None:intergenic
AAGGTTGCCACCTAGCAAAA+GGG 0.597092 8.3:+29385792 None:intergenic
TACATCAAACAGCTGAGTCA+TGG 0.597959 8.3:+29385289 None:intergenic
CATCTTAAGATAATGACCAT+AGG 0.601573 8.3:+29385186 None:intergenic
GCTTAACAATTATCCATCCA+AGG 0.602174 8.3:+29387788 None:intergenic
AAGCCAAACATGAAAGTGGA+AGG 0.609074 8.3:-29387760 MS.gene99561:CDS
ATGATACTAATGAGGACCAA+TGG 0.610796 8.3:+29385638 None:intergenic
AGACTTGCTATTTGGTACAG+TGG 0.616253 8.3:+29386379 None:intergenic
TTACTAATATTCATTGCAGG+TGG 0.618489 8.3:+29385494 None:intergenic
CTAGGTGGCAACCTTACACA+AGG 0.620956 8.3:-29385784 MS.gene99561:intron
CCTAGCAAAAGGGTGATGCA+AGG 0.626441 8.3:+29385802 None:intergenic
CTCACAGTAGCAATTGTTGG+AGG 0.629555 8.3:+29386302 None:intergenic
TGGTAATAATCTTCTTGCAG+CGG 0.639194 8.3:-29388380 MS.gene99561:CDS
TTCTATGATCAGGAAATATG+GGG 0.649101 8.3:-29386914 MS.gene99561:intron
AGTACGAGAGTGCTCTAGTG+CGG 0.660444 8.3:+29386820 None:intergenic
GAAACAAAGGGTCTAGAGGG+AGG 0.663527 8.3:+29385546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATAATATTTTAAGTAAA+TGG - chr8.3:29387673-29387692 MS.gene99561:intron 10.0%
!! ATATCATGTAATGAAATTAT+TGG + chr8.3:29385440-29385459 None:intergenic 15.0%
!! ATATGTTTAATAACTATACT+CGG - chr8.3:29385372-29385391 MS.gene99561:intron 15.0%
!! TAAATATGTAAACACAAAAA+AGG - chr8.3:29386701-29386720 MS.gene99561:intron 15.0%
!! TATCATGTAATGAAATTATT+GGG + chr8.3:29385439-29385458 None:intergenic 15.0%
!! AAATACTGATCATGAAATAA+GGG + chr8.3:29387472-29387491 None:intergenic 20.0%
!! TAAATACTGATCATGAAATA+AGG + chr8.3:29387473-29387492 None:intergenic 20.0%
!! TAACTTGGTAAAAATATGTA+TGG + chr8.3:29388200-29388219 None:intergenic 20.0%
!! TATTTATTACTCATGCAAAA+AGG + chr8.3:29388248-29388267 None:intergenic 20.0%
!! TTATTTCATGATCAGTATTT+AGG - chr8.3:29387472-29387491 MS.gene99561:intron 20.0%
!!! AAGTTATTTCAAATTTTCAG+TGG - chr8.3:29388214-29388233 MS.gene99561:intron 20.0%
!!! ACTGAAAATTTGAAATAACT+TGG + chr8.3:29388215-29388234 None:intergenic 20.0%
!!! ATATCATGGTACAAATTTTT+TGG - chr8.3:29385681-29385700 MS.gene99561:intron 20.0%
!!! GAGAAACATTTTACAATTTA+TGG - chr8.3:29386468-29386487 MS.gene99561:intron 20.0%
!!! TTTTATTTGACTTAGATTGT+TGG - chr8.3:29387392-29387411 MS.gene99561:intron 20.0%
! AAATCGAAGAATAAAATGTC+AGG + chr8.3:29385571-29385590 None:intergenic 25.0%
! AACAAATATGCAATGTTTCT+AGG + chr8.3:29385716-29385735 None:intergenic 25.0%
! AACTTCAACAAAAATATGCA+TGG + chr8.3:29388283-29388302 None:intergenic 25.0%
! AATACTGATCATGAAATAAG+GGG + chr8.3:29387471-29387490 None:intergenic 25.0%
! AATTTATGGAATGAATCTGA+GGG - chr8.3:29386482-29386501 MS.gene99561:intron 25.0%
! AATTTCATATACCTTGTGTA+AGG + chr8.3:29387892-29387911 None:intergenic 25.0%
! ACAACAAAAAATCCAATAAC+AGG + chr8.3:29388072-29388091 None:intergenic 25.0%
! ATAAGTAGGACTTGAATAAT+TGG + chr8.3:29385229-29385248 None:intergenic 25.0%
! ATCAACACATATTGAAACAA+AGG + chr8.3:29388132-29388151 None:intergenic 25.0%
! ATTGATGAGTGAACAATATA+TGG + chr8.3:29385802-29385821 None:intergenic 25.0%
! ATTTGAATTGTATACATCGT+CGG - chr8.3:29387210-29387229 MS.gene99561:intron 25.0%
! CACTGTGAAAGTAAATAAAA+TGG - chr8.3:29387430-29387449 MS.gene99561:intron 25.0%
! CTGGATGAATTATGAAAATA+AGG + chr8.3:29386594-29386613 None:intergenic 25.0%
! GTAAAAATGTTCAAGCAAAT+AGG + chr8.3:29388321-29388340 None:intergenic 25.0%
! TAAGTAGGACTTGAATAATT+GGG + chr8.3:29385228-29385247 None:intergenic 25.0%
! TATTGAGTGAATTTGCAAAT+TGG - chr8.3:29386085-29386104 MS.gene99561:intron 25.0%
! TCAACACATATTGAAACAAA+GGG + chr8.3:29388131-29388150 None:intergenic 25.0%
! TGCATGAGTAATAAATAAAG+TGG - chr8.3:29388251-29388270 MS.gene99561:intron 25.0%
! TTTCGTATACAGAAACAAAA+AGG - chr8.3:29387187-29387206 MS.gene99561:intron 25.0%
!! AACATTGCATATTTGTTGAA+TGG - chr8.3:29385719-29385738 MS.gene99561:intron 25.0%
!! ACATTATTTCTTTCAGAACA+TGG + chr8.3:29387338-29387357 None:intergenic 25.0%
!! ATACTCTTTGTTTAATCTTG+TGG + chr8.3:29385747-29385766 None:intergenic 25.0%
!! TCTTGAAACTTGTTTATGTT+GGG - chr8.3:29385468-29385487 MS.gene99561:intron 25.0%
!! TTCTTGAAACTTGTTTATGT+TGG - chr8.3:29385467-29385486 MS.gene99561:intron 25.0%
!!! CTTATTTTCATAATTCATCC+AGG - chr8.3:29386592-29386611 MS.gene99561:CDS 25.0%
!!! TGGATTTTTTGTTGTTAAAG+CGG - chr8.3:29388077-29388096 MS.gene99561:intron 25.0%
AAGTAGGACTTGAATAATTG+GGG + chr8.3:29385227-29385246 None:intergenic 30.0%
AATCAGAAAGTTACTCCATT+TGG - chr8.3:29386804-29386823 MS.gene99561:CDS 30.0%
ACTCTAACAGTAGAAGTTAA+AGG - chr8.3:29386433-29386452 MS.gene99561:intron 30.0%
AGGGTTAATTACTGATAAAG+TGG + chr8.3:29386279-29386298 None:intergenic 30.0%
ATATCTACGTCAGTATTTCA+TGG + chr8.3:29387632-29387651 None:intergenic 30.0%
ATCATCAAGTATCAAACCAT+TGG - chr8.3:29388008-29388027 MS.gene99561:CDS 30.0%
ATGGGTGACTATAAAAGAAA+TGG + chr8.3:29387613-29387632 None:intergenic 30.0%
ATTAGTATCAAGGTCTGTAT+TGG + chr8.3:29387076-29387095 None:intergenic 30.0%
ATTATTGCTTCTTGTTCATC+AGG - chr8.3:29385929-29385948 MS.gene99561:intron 30.0%
CAATTTATGGAATGAATCTG+AGG - chr8.3:29386481-29386500 MS.gene99561:intron 30.0%
CATGTGTGTTAATTTCATGT+CGG - chr8.3:29387713-29387732 MS.gene99561:intron 30.0%
CTTCTATGATCAGGAAATAT+GGG - chr8.3:29386747-29386766 MS.gene99561:intron 30.0%
CTTTCGAAAATCATTGAACA+AGG - chr8.3:29385306-29385325 MS.gene99561:intron 30.0%
GAAATAGCCTAAATTTCACA+GGG - chr8.3:29386332-29386351 MS.gene99561:CDS 30.0%
GAAATATTAGAAGGAATGAG+AGG - chr8.3:29385997-29386016 MS.gene99561:intron 30.0%
GACTTACTAATATTCATTGC+AGG + chr8.3:29388174-29388193 None:intergenic 30.0%
GTAACATAGCATCAAAGTTA+TGG - chr8.3:29385951-29385970 MS.gene99561:intron 30.0%
TAACAGTAGAAGTTAAAGGA+GGG - chr8.3:29386437-29386456 MS.gene99561:intron 30.0%
TAGAAATTGCAACTGCAAAA+GGG + chr8.3:29386298-29386317 None:intergenic 30.0%
TAGCAATGATGATACTAATG+AGG + chr8.3:29388035-29388054 None:intergenic 30.0%
TATCTACGTCAGTATTTCAT+GGG + chr8.3:29387631-29387650 None:intergenic 30.0%
TGAAATAGCCTAAATTTCAC+AGG - chr8.3:29386331-29386350 MS.gene99561:CDS 30.0%
TGATGATAATATACACTGCA+AGG + chr8.3:29387164-29387183 None:intergenic 30.0%
TTACTAATATTCATTGCAGG+TGG + chr8.3:29388171-29388190 None:intergenic 30.0%
TTAGAAATTGCAACTGCAAA+AGG + chr8.3:29386299-29386318 None:intergenic 30.0%
TTCTATGATCAGGAAATATG+GGG - chr8.3:29386748-29386767 MS.gene99561:intron 30.0%
! ACAAAGTTCGGTGAAATATA+AGG - chr8.3:29387020-29387039 MS.gene99561:intron 30.0%
! ACTCTAAGGAACCTAATAAT+TGG - chr8.3:29387517-29387536 MS.gene99561:intron 30.0%
! AGAAATGGATTCAGATGAAA+AGG + chr8.3:29387598-29387617 None:intergenic 30.0%
! AGTTTTCAGTAATCCTTTTG+TGG - chr8.3:29388406-29388425 MS.gene99561:CDS 30.0%
! CAAGTCTTTTATGTGTAGAA+TGG - chr8.3:29387299-29387318 MS.gene99561:intron 30.0%
! CTCTTGATGATATGATATCA+TGG - chr8.3:29385667-29385686 MS.gene99561:intron 30.0%
! CTTTTCTTACTACCTGTTAT+TGG - chr8.3:29388057-29388076 MS.gene99561:intron 30.0%
! GCATTTCAATGTGATTTTGA+AGG - chr8.3:29388348-29388367 MS.gene99561:intron 30.0%
! GGTGAAATATAAGGCATTTA+AGG - chr8.3:29387029-29387048 MS.gene99561:intron 30.0%
! TTTTTATGTCCTGAAATTGC+AGG - chr8.3:29387979-29387998 MS.gene99561:intron 30.0%
!! CACATAAAAGACTTGCTATT+TGG + chr8.3:29387294-29387313 None:intergenic 30.0%
AAACTCACAGTAGCAATTGT+TGG + chr8.3:29387366-29387385 None:intergenic 35.0%
AAACTGGCAAATATAAGTGC+AGG + chr8.3:29385633-29385652 None:intergenic 35.0%
AACTCATTGTTTGTAGGGAT+GGG - chr8.3:29387831-29387850 MS.gene99561:CDS 35.0%
AAGTTAAAGGAGGGACTATT+TGG - chr8.3:29386446-29386465 MS.gene99561:intron 35.0%
ACATCAATGTTAGCACACTA+GGG + chr8.3:29386366-29386385 None:intergenic 35.0%
ACTTCTACTGTTAGAGTCTA+TGG + chr8.3:29386430-29386449 None:intergenic 35.0%
ACTTTCTGATTACAGATTGC+AGG + chr8.3:29386795-29386814 None:intergenic 35.0%
AGAAACACTCTTTGCAAAAC+TGG + chr8.3:29385649-29385668 None:intergenic 35.0%
AGACTGAACTCATTGTTTGT+AGG - chr8.3:29387825-29387844 MS.gene99561:CDS 35.0%
AGATTGAAAACGACTATGTC+CGG + chr8.3:29387765-29387784 None:intergenic 35.0%
ATAGCATCAAAGTTATGGTC+TGG - chr8.3:29385956-29385975 MS.gene99561:intron 35.0%
ATGATACTAATGAGGACCAA+TGG + chr8.3:29388027-29388046 None:intergenic 35.0%
ATTACTGATAAAGTGGTCCA+TGG + chr8.3:29386272-29386291 None:intergenic 35.0%
ATTGAAACAAAGGGTCTAGA+GGG + chr8.3:29388122-29388141 None:intergenic 35.0%
CCTCTCATATTCATTTCATG+GGG - chr8.3:29386724-29386743 MS.gene99561:intron 35.0%
CTAACAGTAGAAGTTAAAGG+AGG - chr8.3:29386436-29386455 MS.gene99561:intron 35.0%
CTCTCACATAAATACTACCA+TGG - chr8.3:29386252-29386271 MS.gene99561:intron 35.0%
CTGATTTCCCTGTGAAATTT+AGG + chr8.3:29386342-29386361 None:intergenic 35.0%
CTTTCTGATTACAGATTGCA+GGG + chr8.3:29386794-29386813 None:intergenic 35.0%
GACTGAACTCATTGTTTGTA+GGG - chr8.3:29387826-29387845 MS.gene99561:CDS 35.0%
GAGCATCTTGTCCAATTATT+AGG + chr8.3:29387531-29387550 None:intergenic 35.0%
GAGTTTCTGCATTAGTATCA+AGG + chr8.3:29387086-29387105 None:intergenic 35.0%
GATTTACGAAGCACATAGAA+CGG - chr8.3:29386033-29386052 MS.gene99561:intron 35.0%
GCCTCTCATATTCATTTCAT+GGG - chr8.3:29386723-29386742 MS.gene99561:intron 35.0%
GCTTAACAATTATCCATCCA+AGG + chr8.3:29385877-29385896 None:intergenic 35.0%
GCTTATATGTCAACTGACTA+TGG - chr8.3:29385262-29385281 MS.gene99561:CDS 35.0%
GCTTCTATGATCAGGAAATA+TGG - chr8.3:29386746-29386765 MS.gene99561:intron 35.0%
TATTGAAACAAAGGGTCTAG+AGG + chr8.3:29388123-29388142 None:intergenic 35.0%
TATTGTTCACTCATCAATGC+AGG - chr8.3:29385804-29385823 MS.gene99561:CDS 35.0%
TGGTAATAATCTTCTTGCAG+CGG - chr8.3:29385282-29385301 MS.gene99561:CDS 35.0%
TGGTAGTATTTATGTGAGAG+CGG + chr8.3:29386252-29386271 None:intergenic 35.0%
TTCTGTTAACTGTTGTAGCT+TGG - chr8.3:29386958-29386977 MS.gene99561:intron 35.0%
TTGGTGGAGTTAAAACTCTA+AGG - chr8.3:29387503-29387522 MS.gene99561:intron 35.0%
! ACTGTTTTCATAAGCTATCC+TGG + chr8.3:29386613-29386632 None:intergenic 35.0%
! AGCTTGGTGGTATTTACATT+TGG - chr8.3:29386974-29386993 MS.gene99561:intron 35.0%
! CAGTATTTAGGTTTCCTCTT+TGG - chr8.3:29387484-29387503 MS.gene99561:intron 35.0%
! GTCTTTTATGTGTAGAATGG+TGG - chr8.3:29387302-29387321 MS.gene99561:intron 35.0%
! TATTTAGGTTTCCTCTTTGG+TGG - chr8.3:29387487-29387506 MS.gene99561:intron 35.0%
! TTTTTCTCTTTGGCGGTAAA+AGG - chr8.3:29386867-29386886 MS.gene99561:CDS 35.0%
!! AACTTCAGGGAAGTATTTGT+CGG + chr8.3:29386157-29386176 None:intergenic 35.0%
!! GAGTCTTGAATCACTTTTAG+TGG + chr8.3:29387553-29387572 None:intergenic 35.0%
!! GTAATCCTTTTGTGGTCTTA+TGG - chr8.3:29388414-29388433 MS.gene99561:CDS 35.0%
!!! CTCGTACTCTTTTTTCTCTT+TGG - chr8.3:29386857-29386876 MS.gene99561:CDS 35.0%
!!! GAGTTTTTTGGAGCAATTGA+AGG - chr8.3:29385192-29385211 MS.gene99561:CDS 35.0%
!!! GTACTCTTTTTTCTCTTTGG+CGG - chr8.3:29386860-29386879 MS.gene99561:CDS 35.0%
!!! TTTTTTGGAGCAATTGAAGG+TGG - chr8.3:29385195-29385214 MS.gene99561:CDS 35.0%
AAGACTCCATTCAGTTGCTA+GGG - chr8.3:29387566-29387585 MS.gene99561:intron 40.0%
AAGCCAAACATGAAAGTGGA+AGG - chr8.3:29385902-29385921 MS.gene99561:intron 40.0%
AAGGATCCCTCCAAATAAGA+AGG + chr8.3:29385858-29385877 None:intergenic 40.0%
AGACCTTCCACTTTCATGTT+TGG + chr8.3:29385908-29385927 None:intergenic 40.0%
ATCGGACTCACCTTCTTATT+TGG - chr8.3:29385845-29385864 MS.gene99561:intron 40.0%
ATGACTCAGCTGTTTGATGT+AGG - chr8.3:29388375-29388394 MS.gene99561:CDS 40.0%
ATTGCAGGGATGATTACAAC+TGG + chr8.3:29386780-29386799 None:intergenic 40.0%
CACATCAATGTTAGCACACT+AGG + chr8.3:29386367-29386386 None:intergenic 40.0%
CATCAAAGTTATGGTCTGGT+TGG - chr8.3:29385960-29385979 MS.gene99561:intron 40.0%
CCCCATGAAATGAATATGAG+AGG + chr8.3:29386727-29386746 None:intergenic 40.0%
CTCAAGGGAAATGACAATGT+TGG - chr8.3:29387111-29387130 MS.gene99561:intron 40.0%
CTCCAACTGCACTTATAAGT+AGG + chr8.3:29385243-29385262 None:intergenic 40.0%
CTCTGCTAACCTTTAACGTT+CGG - chr8.3:29386200-29386219 MS.gene99561:intron 40.0%
CTGCAAGGAGTCTTACTATT+TGG + chr8.3:29387149-29387168 None:intergenic 40.0%
GAACTCATTGTTTGTAGGGA+TGG - chr8.3:29387830-29387849 MS.gene99561:CDS 40.0%
GACCTACACTTACAACTTCA+GGG + chr8.3:29386170-29386189 None:intergenic 40.0%
GCAGAAACTCAACTTCTCAA+GGG - chr8.3:29387096-29387115 MS.gene99561:intron 40.0%
GCTAAAGCCAAACATGAAAG+TGG - chr8.3:29385898-29385917 MS.gene99561:intron 40.0%
GGCCTCTCATATTCATTTCA+TGG - chr8.3:29386722-29386741 MS.gene99561:intron 40.0%
GGCGTGAGTGAAATATTAGA+AGG - chr8.3:29385988-29386007 MS.gene99561:intron 40.0%
GGTAGTATTTATGTGAGAGC+GGG + chr8.3:29386251-29386270 None:intergenic 40.0%
GTAGTATTTATGTGAGAGCG+GGG + chr8.3:29386250-29386269 None:intergenic 40.0%
GTCCTACTTATAAGTGCAGT+TGG - chr8.3:29385238-29385257 MS.gene99561:CDS 40.0%
GTTAAAGCGGCTGCAAATTT+AGG - chr8.3:29388090-29388109 MS.gene99561:intron 40.0%
TAATATTCATTGCAGGTGGC+AGG + chr8.3:29388167-29388186 None:intergenic 40.0%
TACATCAAACAGCTGAGTCA+TGG + chr8.3:29388376-29388395 None:intergenic 40.0%
TCTGCTAACCTTTAACGTTC+GGG - chr8.3:29386201-29386220 MS.gene99561:intron 40.0%
TGACCTACACTTACAACTTC+AGG + chr8.3:29386171-29386190 None:intergenic 40.0%
TGCAGAAACTCAACTTCTCA+AGG - chr8.3:29387095-29387114 MS.gene99561:intron 40.0%
TGGTTTATGCCCGTTAACAT+CGG - chr8.3:29385827-29385846 MS.gene99561:intron 40.0%
TGTCTGATACTGACATGTGT+CGG - chr8.3:29387736-29387755 MS.gene99561:CDS 40.0%
TGTTAACTGTTGTAGCTTGG+TGG - chr8.3:29386961-29386980 MS.gene99561:intron 40.0%
TTCCCTGAAGTTGTAAGTGT+AGG - chr8.3:29386165-29386184 MS.gene99561:CDS 40.0%
TTTGGTCAACATTCCTCCTA+TGG - chr8.3:29388460-29388479 MS.gene99561:CDS 40.0%
! GACTCACCTTCTTATTTGGA+GGG - chr8.3:29385849-29385868 MS.gene99561:intron 40.0%
! TTCTTATTTGGAGGGATCCT+TGG - chr8.3:29385857-29385876 MS.gene99561:intron 40.0%
!! AGACTTGCTATTTGGTACAG+TGG + chr8.3:29387286-29387305 None:intergenic 40.0%
!! CCAACTGATTCGACAAAGTT+CGG - chr8.3:29387008-29387027 MS.gene99561:intron 40.0%
!!! GAGTTTTAACTCCACCAAAG+AGG + chr8.3:29387501-29387520 None:intergenic 40.0%
AAGGTGAGTCCGATGTTAAC+GGG + chr8.3:29385839-29385858 None:intergenic 45.0%
AAGGTTGCCACCTAGCAAAA+GGG + chr8.3:29387873-29387892 None:intergenic 45.0%
AATGAATCTGAGGGTCTGTC+TGG - chr8.3:29386491-29386510 MS.gene99561:intron 45.0%
CAAGACTCCATTCAGTTGCT+AGG - chr8.3:29387565-29387584 MS.gene99561:intron 45.0%
CACATACCCTAGCAACTGAA+TGG + chr8.3:29387575-29387594 None:intergenic 45.0%
CAGCACCATAAGACCACAAA+AGG + chr8.3:29388422-29388441 None:intergenic 45.0%
CAGCTATAGCACTCACTCTT+TGG - chr8.3:29388442-29388461 MS.gene99561:CDS 45.0%
CAGGGATGATTACAACTGGA+AGG + chr8.3:29386776-29386795 None:intergenic 45.0%
CCGAACTTTGTCGAATCAGT+TGG + chr8.3:29387011-29387030 None:intergenic 45.0%
CTCACAGTAGCAATTGTTGG+AGG + chr8.3:29387363-29387382 None:intergenic 45.0%
GAAGGTGAGTCCGATGTTAA+CGG + chr8.3:29385840-29385859 None:intergenic 45.0%
GATCGCATTCCTGCAATTTC+AGG + chr8.3:29387991-29388010 None:intergenic 45.0%
TAAGGTTGCCACCTAGCAAA+AGG + chr8.3:29387874-29387893 None:intergenic 45.0%
TATTTGGAGGGATCCTTGGA+TGG - chr8.3:29385861-29385880 MS.gene99561:intron 45.0%
TGGTCTACAAGCTGCACATT+TGG + chr8.3:29387255-29387274 None:intergenic 45.0%
TGTTCACTCATCAATGCAGG+TGG - chr8.3:29385807-29385826 MS.gene99561:CDS 45.0%
TTCATGGGGCTTCTATGATC+AGG - chr8.3:29386738-29386757 MS.gene99561:intron 45.0%
! GGACTCACCTTCTTATTTGG+AGG - chr8.3:29385848-29385867 MS.gene99561:intron 45.0%
! GTTATGGTCTGGTTGGTACT+TGG - chr8.3:29385967-29385986 MS.gene99561:intron 45.0%
! TTGCTAATTTGAGACGCGTC+TGG - chr8.3:29386516-29386535 MS.gene99561:intron 45.0%
CCTAGCAAAAGGGTGATGCA+AGG + chr8.3:29387863-29387882 None:intergenic 50.0%
CTAGGTGGCAACCTTACACA+AGG - chr8.3:29387878-29387897 MS.gene99561:intron 50.0%
GAAACAAAGGGTCTAGAGGG+AGG + chr8.3:29388119-29388138 None:intergenic 50.0%
TTGGTACAGTGGACAGAGCT+TGG + chr8.3:29387275-29387294 None:intergenic 50.0%
! CAAGCATCGCGTGTACCAAA+TGG + chr8.3:29386822-29386841 None:intergenic 50.0%
! CCTTGCATCACCCTTTTGCT+AGG - chr8.3:29387860-29387879 MS.gene99561:intron 50.0%
! TACTGACATGTGTCGGTCAC+CGG - chr8.3:29387743-29387762 MS.gene99561:CDS 50.0%
! TGCATCACCCTTTTGCTAGG+TGG - chr8.3:29387863-29387882 MS.gene99561:intron 50.0%
!! AGTACGAGAGTGCTCTAGTG+CGG + chr8.3:29386845-29386864 None:intergenic 50.0%
ACGCGTCTCCCGAACGTTAA+AGG + chr8.3:29386212-29386231 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 29385190 29388494 29385190 ID=MS.gene99561
chr8.3 mRNA 29385190 29388494 29385190 ID=MS.gene99561.t1;Parent=MS.gene99561
chr8.3 exon 29388357 29388494 29388357 ID=MS.gene99561.t1.exon1;Parent=MS.gene99561.t1
chr8.3 CDS 29388357 29388494 29388357 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29387996 29388075 29387996 ID=MS.gene99561.t1.exon2;Parent=MS.gene99561.t1
chr8.3 CDS 29387996 29388075 29387996 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29387734 29387858 29387734 ID=MS.gene99561.t1.exon3;Parent=MS.gene99561.t1
chr8.3 CDS 29387734 29387858 29387734 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29386803 29386924 29386803 ID=MS.gene99561.t1.exon4;Parent=MS.gene99561.t1
chr8.3 CDS 29386803 29386924 29386803 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29386532 29386708 29386532 ID=MS.gene99561.t1.exon5;Parent=MS.gene99561.t1
chr8.3 CDS 29386532 29386708 29386532 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29386307 29386420 29386307 ID=MS.gene99561.t1.exon6;Parent=MS.gene99561.t1
chr8.3 CDS 29386307 29386420 29386307 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29386097 29386197 29386097 ID=MS.gene99561.t1.exon7;Parent=MS.gene99561.t1
chr8.3 CDS 29386097 29386197 29386097 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29385785 29385837 29385785 ID=MS.gene99561.t1.exon8;Parent=MS.gene99561.t1
chr8.3 CDS 29385785 29385837 29385785 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29385498 29385683 29385498 ID=MS.gene99561.t1.exon9;Parent=MS.gene99561.t1
chr8.3 CDS 29385498 29385683 29385498 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
chr8.3 exon 29385190 29385314 29385190 ID=MS.gene99561.t1.exon10;Parent=MS.gene99561.t1
chr8.3 CDS 29385190 29385314 29385190 ID=cds.MS.gene99561.t1;Parent=MS.gene99561.t1
Gene Sequence

>MS.gene99561

ATGAGTTTTTTGGAGCAATTGAAGGTGGCATCTGCCCCAATTATTCAAGTCCTACTTATAAGTGCAGTTGGAGCTTATATGTCAACTGACTATGGTAATAATCTTCTTGCAGCGGACTTTCGAAAATCATTGAACAAGGTAAAGTAGCTTAATGATTTAGATATCAGTGTTTTTTAATTCAAATATGTTTAATAACTATACTCGGATGATATAAACAATTTTTTATAGATATTTTCAATCATATTTCCCAATAATTTCATTACATGATATTAGTTCTTTCTTGAAACTTGTTTATGTTGGGAAAAGATGATGAAATTTGAATGAACATTCGTGTATCGTTGTTTACATTGTTAGTGTATAGTTATTCATGAATATAATCCTGACATTTTATTCTTCGATTTTGTTTATGCATTGTGCAGATTGTTTTCACTGCATTCACTCCTGCACTTATATTTGCCAGTTTTGCAAAGAGTGTTTCTCTTGATGATATGATATCATGGTACAAATTTTTTGGATTTTAACTCCTAGAAACATTGCATATTTGTTGAATGGAACCACAAGATTAAACAAAGAGTATCATGATTTTTCGTTTTTGATTGTTTATGTTAACCATATATTGTTCACTCATCAATGCAGGTGGTTTATGCCCGTTAACATCGGACTCACCTTCTTATTTGGAGGGATCCTTGGATGGATAATTGTTAAGCTGCTAAAGCCAAACATGAAAGTGGAAGGTCTTATTATTGCTTCTTGTTCATCAGGTAACATAGCATCAAAGTTATGGTCTGGTTGGTACTTGGCGTGAGTGAAATATTAGAAGGAATGAGAGGCATAAAATGTTAAGATTTACGAAGCACATAGAACGGATGCATGCTTTGATACATTTGCTAACTATTATTGAGTGAATTTGCAAATTGGTTCGAATTTGTAAGCATCAGTTAAAATAATCTCTAATTTTTGCAAACCGACAAATACTTCCCTGAAGTTGTAAGTGTAGGTCAAAATAAACACTCTGCTAACCTTTAACGTTCGGGAGACGCGTTAACTGAATATGTGACCCCGCTCTCACATAAATACTACCATGGACCACTTTATCAGTAATTAACCCTTTTGCAGTTGCAATTTCTAACAAATTTGTCTCTGAAATAGCCTAAATTTCACAGGGAAATCAGTCCCTAGTGTGCTAACATTGATGTGAGATCAATATGTAATGCGACATGTTAGTTAATGTGTCATGCCATAGACTCTAACAGTAGAAGTTAAAGGAGGGACTATTTGGAGAAACATTTTACAATTTATGGAATGAATCTGAGGGTCTGTCTGGATTTGCTAATTTGAGACGCGTCTGGTTGAGAGAGCTTATGAAAACAGTTTATAACATGTTCATAAGTTATTTTCACACCTTATTTTCATAATTCATCCAGGATAGCTTATGAAAACAGTCTGATTTAATTTGATCTTATCTTTTGTTATTGAAATCAGCTTATAGAAACACATAGACAAACAGAATCTAAATATGTAAACACAAAAAAGGCCTCTCATATTCATTTCATGGGGCTTCTATGATCAGGAAATATGGGGAACCTTCCAGTTGTAATCATCCCTGCAATCTGTAATCAGAAAGTTACTCCATTTGGTACACGCGATGCTTGCCGCACTAGAGCACTCTCGTACTCTTTTTTCTCTTTGGCGGTAAAAGGAATTCATTTTACATTACATTTTCTTAAGTCATCATAACTTGTATACATTATCTCATAATATTGTTATGTTCTGTTAACTGTTGTAGCTTGGTGGTATTTACATTTGGACTTTCACTTACCAACTGATTCGACAAAGTTCGGTGAAATATAAGGCATTTAAGGCTGCTGAACTCTTAAAGATTGCCAATACAGACCTTGATACTAATGCAGAAACTCAACTTCTCAAGGGAAATGACAATGTTGGAGACACTGAGAACCAAATAGTAAGACTCCTTGCAGTGTATATTATCATCATGTTTTCGTATACAGAAACAAAAAGGATTTGAATTGTATACATCGTCGGTGTATATTATCTAACGAATCCAAATGTGCAGCTTGTAGACCAAGCTCTGTCCACTGTACCAAATAGCAAGTCTTTTATGTGTAGAATGGTGGAAACTTCAAGCCATGTTCTGAAAGAAATAATGTCACCTCCAACAATTGCTACTGTGAGTTTCATTCATTTTATTTGACTTAGATTGTTGGTTTAGTTTTTTATTTCACTGTGAAAGTAAATAAAATGGTTAAGAGAAATTTCACCCCTTATTTCATGATCAGTATTTAGGTTTCCTCTTTGGTGGAGTTAAAACTCTAAGGAACCTAATAATTGGACAAGATGCTCCACTAAAAGTGATTCAAGACTCCATTCAGTTGCTAGGGTATGTGCCTTTTCATCTGAATCCATTTCTTTTATAGTCACCCATGAAATACTGACGTAGATATCAGATACGACATACATGTTGACATATAATATTTTAAGTAAATGGAAGTCATTGAATAGAGTCATGTGTGTTAATTTCATGTCGGTGTCTGATACTGACATGTGTCGGTCACCGGACATAGTCGTTTTCAATCTGAAGTGTCAAGTGTTATATAGATAATCAAACTTATAAGTTAGACTGAACTCATTGTTTGTAGGGATGGGACAATTCCTTGCATCACCCTTTTGCTAGGTGGCAACCTTACACAAGGTATATGAAATTTAACTTTCAAAGATGTGCATTCTTCTCAACATTCTTCAAAAACAATCTGAATAACTAATATTAATTTTTTTTATGTCCTGAAATTGCAGGAATGCGATCATCAAGTATCAAACCATTGGTCCTCATTAGTATCATCATTGCTAAACTTTTCTTACTACCTGTTATTGGATTTTTTGTTGTTAAAGCGGCTGCAAATTTAGGCTTCCTCCCTCTAGACCCTTTGTTTCAATATGTGTTGATAATACAGTATGTCCTGCCACCTGCAATGAATATTAGTAAGTCATTCCATACATATTTTTACCAAGTTATTTCAAATTTTCAGTGGCATAGTTACCTTTTTGCATGAGTAATAAATAAAGTGGTTGATTCCATGCATATTTTTGTTGAAGTTGTATATATATAGTTACCTATTTGCTTGAACATTTTTACTGATATTGCATTTCAATGTGATTTTGAAGGTACCATGACTCAGCTGTTTGATGTAGGCACAGAAGAGTTTTCAGTAATCCTTTTGTGGTCTTATGGTGCTGCAGCTATAGCACTCACTCTTTGGTCAACATTCCTCCTATGGTCATTATCTTAA

Protein sequence

>MS.gene99561.t1

MSFLEQLKVASAPIIQVLLISAVGAYMSTDYGNNLLAADFRKSLNKIVFTAFTPALIFASFAKSVSLDDMISWWFMPVNIGLTFLFGGILGWIIVKLLKPNMKVEGLIIASCSSGNMGNLPVVIIPAICNQKVTPFGTRDACRTRALSYSFFSLALGGIYIWTFTYQLIRQSSVKYKAFKAAELLKIANTDLDTNAETQLLKGNDNVGDTENQILVDQALSTVPNSKSFMCRMVETSSHVLKEIMSPPTIATYLGFLFGGVKTLRNLIIGQDAPLKVIQDSIQLLGDGTIPCITLLLGGNLTQGMRSSSIKPLVLISIIIAKLFLLPVIGFFVVKAAANLGFLPLDPLFQYVLIIQYVLPPAMNISTMTQLFDVGTEEFSVILLWSYGAAAIALTLWSTFLLWSLS