Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69976.t1 | AET03577.2 | 89.9 | 406 | 14 | 2 | 1 | 406 | 1 | 379 | 4.70E-194 | 687.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69976.t1 | Q9FKY4 | 54.9 | 406 | 172 | 3 | 1 | 406 | 1 | 395 | 4.8e-123 | 442.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69976.t1 | G7L8P3 | 89.9 | 406 | 14 | 2 | 1 | 406 | 1 | 379 | 3.4e-194 | 687.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69976 | MS.gene64907 | PPI |
| MS.gene69976 | MS.gene72673 | PPI |
| MS.gene69976 | MS.gene23822 | PPI |
| MS.gene69976 | MS.gene72672 | PPI |
| MS.gene82524 | MS.gene69976 | PPI |
| MS.gene69976 | MS.gene86523 | PPI |
| MS.gene69976 | MS.gene86524 | PPI |
| MS.gene72674 | MS.gene69976 | PPI |
| MS.gene65344 | MS.gene69976 | PPI |
| MS.gene69976 | MS.gene82524 | PPI |
| MS.gene64906 | MS.gene69976 | PPI |
| MS.gene69976 | MS.gene86525 | PPI |
| MS.gene69976 | MS.gene64908 | PPI |
| MS.gene99561 | MS.gene69976 | PPI |
| MS.gene69976 | MS.gene65344 | PPI |
| MS.gene69976 | MS.gene066493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69976.t1 | MTR_8g073160 | 89.901 | 406 | 14 | 2 | 1 | 406 | 1 | 379 | 0.0 | 723 |
| MS.gene69976.t1 | MTR_5g024660 | 68.333 | 420 | 119 | 2 | 1 | 406 | 1 | 420 | 0.0 | 589 |
| MS.gene69976.t1 | MTR_5g024640 | 65.238 | 420 | 132 | 2 | 1 | 406 | 1 | 420 | 0.0 | 572 |
| MS.gene69976.t1 | MTR_5g024640 | 63.421 | 380 | 125 | 2 | 1 | 366 | 1 | 380 | 0.0 | 509 |
| MS.gene69976.t1 | MTR_5g024520 | 58.867 | 406 | 115 | 3 | 1 | 406 | 1 | 354 | 6.92e-162 | 459 |
| MS.gene69976.t1 | MTR_5g024640 | 60.000 | 300 | 106 | 2 | 1 | 286 | 1 | 300 | 5.45e-132 | 381 |
| MS.gene69976.t1 | MTR_5g024970 | 41.568 | 421 | 227 | 6 | 1 | 406 | 1 | 417 | 1.48e-113 | 338 |
| MS.gene69976.t1 | MTR_5g024560 | 60.000 | 265 | 92 | 2 | 156 | 406 | 35 | 299 | 2.96e-110 | 326 |
| MS.gene69976.t1 | MTR_8g072560 | 39.409 | 406 | 238 | 5 | 1 | 403 | 1 | 401 | 7.04e-108 | 323 |
| MS.gene69976.t1 | MTR_5g024970 | 39.286 | 448 | 226 | 7 | 1 | 406 | 1 | 444 | 8.03e-108 | 325 |
| MS.gene69976.t1 | MTR_5g024970 | 40.314 | 382 | 209 | 6 | 1 | 367 | 1 | 378 | 1.11e-95 | 291 |
| MS.gene69976.t1 | MTR_5g024970 | 41.954 | 348 | 184 | 5 | 74 | 406 | 9 | 353 | 9.58e-94 | 285 |
| MS.gene69976.t1 | MTR_8g006775 | 35.817 | 416 | 251 | 4 | 1 | 403 | 1 | 413 | 9.97e-90 | 277 |
| MS.gene69976.t1 | MTR_8g006780 | 39.312 | 407 | 243 | 3 | 1 | 403 | 1 | 407 | 4.64e-89 | 275 |
| MS.gene69976.t1 | MTR_5g024580 | 69.277 | 166 | 51 | 0 | 1 | 166 | 1 | 166 | 2.90e-80 | 244 |
| MS.gene69976.t1 | MTR_5g024970 | 39.812 | 319 | 173 | 6 | 1 | 304 | 1 | 315 | 3.33e-73 | 231 |
| MS.gene69976.t1 | MTR_5g024970 | 38.870 | 301 | 165 | 6 | 1 | 286 | 1 | 297 | 3.76e-65 | 211 |
| MS.gene69976.t1 | MTR_7g074190 | 33.250 | 400 | 256 | 7 | 2 | 397 | 21 | 413 | 2.90e-59 | 199 |
| MS.gene69976.t1 | MTR_1g108390 | 28.118 | 441 | 267 | 8 | 2 | 397 | 14 | 449 | 2.40e-56 | 192 |
| MS.gene69976.t1 | MTR_5g024970 | 44.271 | 192 | 104 | 2 | 1 | 190 | 1 | 191 | 9.58e-55 | 182 |
| MS.gene69976.t1 | MTR_5g024970 | 44.271 | 192 | 104 | 2 | 1 | 190 | 1 | 191 | 2.10e-54 | 181 |
| MS.gene69976.t1 | MTR_5g054950 | 27.146 | 431 | 271 | 8 | 6 | 397 | 16 | 442 | 1.24e-53 | 184 |
| MS.gene69976.t1 | MTR_8g006780 | 42.308 | 156 | 90 | 0 | 1 | 156 | 1 | 156 | 1.35e-40 | 147 |
| MS.gene69976.t1 | MTR_8g006780 | 45.399 | 163 | 89 | 0 | 241 | 403 | 175 | 337 | 2.18e-29 | 117 |
| MS.gene69976.t1 | MTR_5g024960 | 45.631 | 103 | 56 | 0 | 304 | 406 | 52 | 154 | 2.16e-27 | 106 |
| MS.gene69976.t1 | MTR_5g024530 | 65.714 | 70 | 24 | 0 | 1 | 70 | 1 | 70 | 1.53e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69976.t1 | AT5G65980 | 54.926 | 406 | 172 | 3 | 1 | 406 | 1 | 395 | 3.81e-160 | 456 |
| MS.gene69976.t1 | AT2G17500 | 51.485 | 404 | 182 | 4 | 1 | 402 | 1 | 392 | 6.34e-156 | 446 |
| MS.gene69976.t1 | AT2G17500 | 51.485 | 404 | 182 | 4 | 1 | 402 | 1 | 392 | 6.34e-156 | 446 |
| MS.gene69976.t1 | AT2G17500 | 51.485 | 404 | 182 | 4 | 1 | 402 | 1 | 392 | 6.34e-156 | 446 |
| MS.gene69976.t1 | AT2G17500 | 51.485 | 404 | 182 | 4 | 1 | 402 | 1 | 392 | 6.34e-156 | 446 |
| MS.gene69976.t1 | AT5G65980 | 53.930 | 369 | 159 | 3 | 1 | 369 | 1 | 358 | 6.35e-143 | 411 |
| MS.gene69976.t1 | AT1G76520 | 40.831 | 409 | 213 | 6 | 1 | 403 | 2 | 387 | 6.09e-111 | 331 |
| MS.gene69976.t1 | AT1G76520 | 40.831 | 409 | 213 | 6 | 1 | 403 | 2 | 387 | 6.09e-111 | 331 |
| MS.gene69976.t1 | AT1G20925 | 40.447 | 403 | 218 | 5 | 1 | 403 | 89 | 469 | 3.59e-110 | 332 |
| MS.gene69976.t1 | AT1G76530 | 38.942 | 416 | 237 | 4 | 1 | 403 | 1 | 412 | 1.37e-92 | 285 |
| MS.gene69976.t1 | AT1G76530 | 38.942 | 416 | 237 | 4 | 1 | 403 | 1 | 412 | 1.37e-92 | 285 |
| MS.gene69976.t1 | AT5G01990 | 31.281 | 406 | 263 | 7 | 2 | 397 | 23 | 422 | 1.37e-57 | 194 |
| MS.gene69976.t1 | AT1G71090 | 27.896 | 423 | 263 | 7 | 13 | 397 | 22 | 440 | 6.50e-55 | 188 |
| MS.gene69976.t1 | AT1G76530 | 44.156 | 154 | 85 | 1 | 1 | 154 | 1 | 153 | 5.70e-41 | 148 |
Find 86 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGGACTCACCTTCTTATT+TGG | 0.145076 | 8.1:-32579967 | MS.gene69976:CDS |
| CACATAAAAGACTTGCTATT+TGG | 0.201172 | 8.1:+32578913 | None:intergenic |
| TTATTTCATGATCAGTATTT+AGG | 0.219920 | 8.1:-32578732 | MS.gene69976:intron |
| GAGCATCTTGTCCAATTATT+AGG | 0.223124 | 8.1:+32578676 | None:intergenic |
| GGTGAAATATAAGGCATTTA+AGG | 0.232295 | 8.1:-32579175 | MS.gene69976:CDS |
| GCTTCTATGATCAGGAAATA+TGG | 0.241447 | 8.1:-32579455 | MS.gene69976:intron |
| CAGTATTTAGGTTTCCTCTT+TGG | 0.244158 | 8.1:-32578720 | MS.gene69976:CDS |
| ATAAGTAGGACTTGAATAAT+TGG | 0.250424 | 8.1:+32580586 | None:intergenic |
| ACTCTAAGGAACCTAATAAT+TGG | 0.257337 | 8.1:-32578687 | MS.gene69976:CDS |
| ACAAAGTTCGGTGAAATATA+AGG | 0.321958 | 8.1:-32579184 | MS.gene69976:CDS |
| GTTATTGCTTCTTGTTCATC+AGG | 0.322890 | 8.1:-32579883 | MS.gene69976:intron |
| TTCTTATTTGGCGGGATCCT+TGG | 0.331321 | 8.1:-32579955 | MS.gene69976:CDS |
| GTTAAAGCGGCTGCAAATTT+AGG | 0.336331 | 8.1:-32578113 | MS.gene69976:CDS |
| TAAGTAGGACTTGAATAATT+GGG | 0.339142 | 8.1:+32580587 | None:intergenic |
| CAGCTATAGCACTCACTCTT+TGG | 0.342513 | 8.1:-32577761 | MS.gene69976:CDS |
| GCTTATATGTCAACTGACTA+TGG | 0.347693 | 8.1:-32580550 | MS.gene69976:CDS |
| AGCTTGGTGGTATTTACATT+TGG | 0.348845 | 8.1:-32579230 | MS.gene69976:CDS |
| ACTTTCTGATTACAGATTGC+AGG | 0.352245 | 8.1:+32579409 | None:intergenic |
| AGAAACACTCTTTGCAAAAC+TGG | 0.352652 | 8.1:+32580166 | None:intergenic |
| AGACCTTCCACTTTCATGTT+TGG | 0.366333 | 8.1:+32579907 | None:intergenic |
| GACTTACTAATATTCATTGC+AGG | 0.379207 | 8.1:+32578032 | None:intergenic |
| TATTTAGGTTTCCTCTTTGG+TGG | 0.388227 | 8.1:-32578717 | MS.gene69976:CDS |
| CTTCTATGATCAGGAAATAT+GGG | 0.396596 | 8.1:-32579454 | MS.gene69976:intron |
| AATCAGAAAGTTACTCCATT+TGG | 0.400391 | 8.1:-32579397 | MS.gene69976:CDS |
| TTGGTGGAGTTAAAACTCTA+AGG | 0.416436 | 8.1:-32578701 | MS.gene69976:CDS |
| AATTTCATATACCTTGTGTA+AGG | 0.421002 | 8.1:+32578315 | None:intergenic |
| GAGTTTCTGCATTAGTATCA+AGG | 0.438055 | 8.1:+32579121 | None:intergenic |
| TAAGGTTGCCACCTAGCAAA+AGG | 0.449383 | 8.1:+32578333 | None:intergenic |
| CCAACTGATTCGACAAAGTT+CGG | 0.449697 | 8.1:-32579196 | MS.gene69976:CDS |
| CAAGACTCCATTCAGTTGCT+AGG | 0.456663 | 8.1:-32578639 | MS.gene69976:CDS |
| TGTTAACTGTTGTAGCTTGG+TGG | 0.460560 | 8.1:-32579243 | MS.gene69976:intron |
| AAGGTGAGTCCGATGTTAAC+CGG | 0.463909 | 8.1:+32579976 | None:intergenic |
| GGACTCACCTTCTTATTTGG+CGG | 0.466287 | 8.1:-32579964 | MS.gene69976:CDS |
| TAATATTCATTGCAGGTGGC+AGG | 0.466987 | 8.1:+32578039 | None:intergenic |
| CTCTTGATGATATGATATCA+TGG | 0.468126 | 8.1:-32580145 | MS.gene69976:intron |
| TTTGGTCAACATTCCTCCTA+TGG | 0.472028 | 8.1:-32577743 | MS.gene69976:CDS |
| CAGCACCATAAGACCACAAA+AGG | 0.477890 | 8.1:+32577784 | None:intergenic |
| AAACTCACAGTAGCAATTGT+TGG | 0.477998 | 8.1:+32578841 | None:intergenic |
| GACTCACCTTCTTATTTGGC+GGG | 0.480268 | 8.1:-32579963 | MS.gene69976:CDS |
| GTCCTACTTATAAGTGCAGT+TGG | 0.485340 | 8.1:-32580574 | MS.gene69976:CDS |
| CAAGCATCGTGTGTACCAAA+TGG | 0.488878 | 8.1:+32579382 | None:intergenic |
| ATTGCAGGGATGATTACAAC+TGG | 0.496624 | 8.1:+32579424 | None:intergenic |
| TATTTGGCGGGATCCTTGGA+TGG | 0.501308 | 8.1:-32579951 | MS.gene69976:CDS |
| TGCAGAAACTCAACTTCTCA+AGG | 0.501582 | 8.1:-32579109 | MS.gene69976:CDS |
| TTGGTACAGTGGACAGAGCT+TGG | 0.511412 | 8.1:+32578932 | None:intergenic |
| TCAATGCAGGTGGTTTATGC+CGG | 0.513564 | 8.1:-32579995 | MS.gene69976:intron |
| CACATACCCTAGCAACTGAA+TGG | 0.513887 | 8.1:+32578632 | None:intergenic |
| CTTTCTGATTACAGATTGCA+GGG | 0.516869 | 8.1:+32579410 | None:intergenic |
| CCGAACTTTGTCGAATCAGT+TGG | 0.521570 | 8.1:+32579196 | None:intergenic |
| AAGACTCCATTCAGTTGCTA+GGG | 0.530940 | 8.1:-32578638 | MS.gene69976:intron |
| TCAACACATATTGAAACAAA+GGG | 0.533251 | 8.1:+32578075 | None:intergenic |
| ATCATCAAGTATCAAACCAT+TGG | 0.534119 | 8.1:-32578195 | MS.gene69976:CDS |
| GCTAAAGCCAAACATGAAAG+TGG | 0.535468 | 8.1:-32579914 | MS.gene69976:CDS |
| ATCAACACATATTGAAACAA+AGG | 0.537421 | 8.1:+32578074 | None:intergenic |
| ACATTATTTCTTTCAGAACA+TGG | 0.541048 | 8.1:+32578869 | None:intergenic |
| AAGGATCCCGCCAAATAAGA+AGG | 0.545185 | 8.1:+32579957 | None:intergenic |
| CTTTCGAAAATCATTGAACA+AGG | 0.553730 | 8.1:-32580506 | MS.gene69976:intron |
| CTCAAGGGAAATGACAATGT+TGG | 0.557338 | 8.1:-32579093 | MS.gene69976:CDS |
| AAACTGGCAAATATAAGTGC+AGG | 0.570953 | 8.1:+32580182 | None:intergenic |
| ATGACTCAGCTGTTTGATGT+AGG | 0.572960 | 8.1:-32577828 | MS.gene69976:CDS |
| ATTGAAACAAAGGGTCTAGA+GGG | 0.573069 | 8.1:+32578084 | None:intergenic |
| CTCCAACTGCACTTATAAGT+AGG | 0.574039 | 8.1:+32580572 | None:intergenic |
| TCGAATCAGTTGGTAAGTGA+AGG | 0.575224 | 8.1:+32579206 | None:intergenic |
| CTTAAGATAATGACCATAGG+AGG | 0.581597 | 8.1:+32577730 | None:intergenic |
| TAGCAATGATGATACTAATG+AGG | 0.582291 | 8.1:+32578171 | None:intergenic |
| AAGTAGGACTTGAATAATTG+GGG | 0.583437 | 8.1:+32580588 | None:intergenic |
| TGGTTTATGCCGGTTAACAT+CGG | 0.585974 | 8.1:-32579985 | MS.gene69976:CDS |
| GCAGAAACTCAACTTCTCAA+GGG | 0.587651 | 8.1:-32579108 | MS.gene69976:CDS |
| TATTGAAACAAAGGGTCTAG+AGG | 0.589046 | 8.1:+32578083 | None:intergenic |
| ATTAGTATCAAGGTCTGTGT+TGG | 0.593309 | 8.1:+32579131 | None:intergenic |
| CAGGGATGATTACAACTGGA+AGG | 0.596650 | 8.1:+32579428 | None:intergenic |
| AAGGTTGCCACCTAGCAAAA+GGG | 0.597092 | 8.1:+32578334 | None:intergenic |
| TACATCAAACAGCTGAGTCA+TGG | 0.597959 | 8.1:+32577830 | None:intergenic |
| CATCTTAAGATAATGACCAT+AGG | 0.601573 | 8.1:+32577727 | None:intergenic |
| GCTTAACAATTATCCATCCA+AGG | 0.602174 | 8.1:+32579938 | None:intergenic |
| AAGCCAAACATGAAAGTGGA+AGG | 0.609074 | 8.1:-32579910 | MS.gene69976:CDS |
| ATGATACTAATGAGGACCAA+TGG | 0.610796 | 8.1:+32578179 | None:intergenic |
| AGACTTGCTATTTGGTACAG+TGG | 0.616253 | 8.1:+32578921 | None:intergenic |
| TTACTAATATTCATTGCAGG+TGG | 0.618489 | 8.1:+32578035 | None:intergenic |
| CTAGGTGGCAACCTTACACA+AGG | 0.620956 | 8.1:-32578326 | MS.gene69976:intron |
| CCTAGCAAAAGGGTGATGCA+AGG | 0.626441 | 8.1:+32578344 | None:intergenic |
| CTCACAGTAGCAATTGTTGG+AGG | 0.629555 | 8.1:+32578844 | None:intergenic |
| TGGTAATAATCTTCTTGCAG+CGG | 0.639194 | 8.1:-32580530 | MS.gene69976:CDS |
| TTCTATGATCAGGAAATATG+GGG | 0.654339 | 8.1:-32579453 | MS.gene69976:intron |
| AGTACGAGAGTGCTCTAGTG+CGG | 0.660444 | 8.1:+32579359 | None:intergenic |
| GAAACAAAGGGTCTAGAGGG+AGG | 0.663527 | 8.1:+32578087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATAATATTTTAAGTAAA+TGG | - | chr8.1:32579822-32579841 | MS.gene69976:intron | 10.0% |
| !! | ATATCATGTAATGAAATTAT+TGG | + | chr8.1:32577981-32578000 | None:intergenic | 15.0% |
| !! | ATATGTTTAATAACTATACT+CGG | - | chr8.1:32577913-32577932 | MS.gene69976:intron | 15.0% |
| !! | TATCATGTAATGAAATTATT+GGG | + | chr8.1:32577980-32577999 | None:intergenic | 15.0% |
| !! | AAATACTGATCATGAAATAA+GGG | + | chr8.1:32579621-32579640 | None:intergenic | 20.0% |
| !! | AATTTATGGAATGTATTTGA+GGG | - | chr8.1:32578612-32578631 | MS.gene69976:intron | 20.0% |
| !! | ATACTCATTGTTTAATCTTA+TGG | + | chr8.1:32578288-32578307 | None:intergenic | 20.0% |
| !! | TAAAATGTTAAGATGTACAA+AGG | - | chr8.1:32578563-32578582 | MS.gene69976:intron | 20.0% |
| !! | TAAATACTGATCATGAAATA+AGG | + | chr8.1:32579622-32579641 | None:intergenic | 20.0% |
| !! | TAACTTGGTAAAAATATGTA+TGG | + | chr8.1:32580350-32580369 | None:intergenic | 20.0% |
| !! | TATTTATTACTCATGCAAAA+AGG | + | chr8.1:32580398-32580417 | None:intergenic | 20.0% |
| !! | TTATTTCATGATCAGTATTT+AGG | - | chr8.1:32579621-32579640 | MS.gene69976:intron | 20.0% |
| !!! | AAGTTATTTCAAATTTTCAG+TGG | - | chr8.1:32580364-32580383 | MS.gene69976:intron | 20.0% |
| !!! | ACTGAAAATTTGAAATAACT+TGG | + | chr8.1:32580365-32580384 | None:intergenic | 20.0% |
| !!! | ATATCATGGTACAAATTTTT+TGG | - | chr8.1:32578222-32578241 | MS.gene69976:intron | 20.0% |
| !!! | TTTTATTTGACTTAGATTGT+TGG | - | chr8.1:32579541-32579560 | MS.gene69976:intron | 20.0% |
| ! | AAATCGAAGAATAAAATGTC+AGG | + | chr8.1:32578112-32578131 | None:intergenic | 25.0% |
| ! | AACTTCAACAAAAATATGCA+TGG | + | chr8.1:32580433-32580452 | None:intergenic | 25.0% |
| ! | AATACTGATCATGAAATAAG+GGG | + | chr8.1:32579620-32579639 | None:intergenic | 25.0% |
| ! | AATTTCATATACCTTGTGTA+AGG | + | chr8.1:32580041-32580060 | None:intergenic | 25.0% |
| ! | ACAACAAAAAATCCAATAAC+AGG | + | chr8.1:32580222-32580241 | None:intergenic | 25.0% |
| ! | ATAAGTAGGACTTGAATAAT+TGG | + | chr8.1:32577770-32577789 | None:intergenic | 25.0% |
| ! | ATCAACACATATTGAAACAA+AGG | + | chr8.1:32580282-32580301 | None:intergenic | 25.0% |
| ! | ATTTGAATTGTATACATCGT+CGG | - | chr8.1:32579359-32579378 | MS.gene69976:CDS | 25.0% |
| ! | CAATTTATGGAATGTATTTG+AGG | - | chr8.1:32578611-32578630 | MS.gene69976:intron | 25.0% |
| ! | CACTGTGAAAGTAAATAAAA+TGG | - | chr8.1:32579579-32579598 | MS.gene69976:intron | 25.0% |
| ! | CTGGATGAATTATGAAAATA+AGG | + | chr8.1:32578747-32578766 | None:intergenic | 25.0% |
| ! | GAAATATTAAAAGGAATGAG+AGG | - | chr8.1:32578538-32578557 | MS.gene69976:intron | 25.0% |
| ! | GTAAAAATGTTCAAGCAAAT+AGG | + | chr8.1:32580471-32580490 | None:intergenic | 25.0% |
| ! | TAAATATGCAAACGCAAAAA+AGG | - | chr8.1:32578853-32578872 | MS.gene69976:CDS | 25.0% |
| ! | TAAGTAGGACTTGAATAATT+GGG | + | chr8.1:32577769-32577788 | None:intergenic | 25.0% |
| ! | TCAACACATATTGAAACAAA+GGG | + | chr8.1:32580281-32580300 | None:intergenic | 25.0% |
| ! | TGCATGAGTAATAAATAAAG+TGG | - | chr8.1:32580401-32580420 | MS.gene69976:intron | 25.0% |
| ! | TTTCGTATACAGAAACAAAA+AGG | - | chr8.1:32579336-32579355 | MS.gene69976:intron | 25.0% |
| !! | AACTTTGCATATTTGTTGAA+TGG | - | chr8.1:32578260-32578279 | MS.gene69976:intron | 25.0% |
| !! | ACATTATTTCTTTCAGAACA+TGG | + | chr8.1:32579487-32579506 | None:intergenic | 25.0% |
| !! | GAGAGACATTTTACAATTTA+TGG | - | chr8.1:32578598-32578617 | MS.gene69976:intron | 25.0% |
| !! | TCTTGAATCTTGTTTATGTT+GGG | - | chr8.1:32578009-32578028 | MS.gene69976:intron | 25.0% |
| !! | TTCTTGAATCTTGTTTATGT+TGG | - | chr8.1:32578008-32578027 | MS.gene69976:intron | 25.0% |
| !!! | CTTATTTTCATAATTCATCC+AGG | - | chr8.1:32578745-32578764 | MS.gene69976:intron | 25.0% |
| !!! | TGGATTTTTTGTTGTTAAAG+CGG | - | chr8.1:32580227-32580246 | MS.gene69976:intron | 25.0% |
| !!! | TTTTTTGCGTTTGCATATTT+AGG | + | chr8.1:32578854-32578873 | None:intergenic | 25.0% |
| AAGTAGGACTTGAATAATTG+GGG | + | chr8.1:32577768-32577787 | None:intergenic | 30.0% | |
| AATCAGAAAGTTACTCCATT+TGG | - | chr8.1:32578956-32578975 | MS.gene69976:intron | 30.0% | |
| ATATCTACGTCAGTATTTCA+TGG | + | chr8.1:32579781-32579800 | None:intergenic | 30.0% | |
| ATCATCAAGTATCAAACCAT+TGG | - | chr8.1:32580158-32580177 | MS.gene69976:CDS | 30.0% | |
| ATGGGTGACTATAAAAGAAA+TGG | + | chr8.1:32579762-32579781 | None:intergenic | 30.0% | |
| ATGTTAAGATGTACAAAGGT+AGG | - | chr8.1:32578567-32578586 | MS.gene69976:intron | 30.0% | |
| ATTGATGAGTGAACAGTATA+TGG | + | chr8.1:32578343-32578362 | None:intergenic | 30.0% | |
| CATCATGAAATGAATATGAG+AGG | + | chr8.1:32578879-32578898 | None:intergenic | 30.0% | |
| CATGTGTGTTAATTTCATGT+CGG | - | chr8.1:32579862-32579881 | MS.gene69976:intron | 30.0% | |
| CTTCTATGATCAGGAAATAT+GGG | - | chr8.1:32578899-32578918 | MS.gene69976:CDS | 30.0% | |
| CTTTCGAAAATCATTGAACA+AGG | - | chr8.1:32577847-32577866 | MS.gene69976:intron | 30.0% | |
| GACTTACTAATATTCATTGC+AGG | + | chr8.1:32580324-32580343 | None:intergenic | 30.0% | |
| GTAACATAGCATCAAAGTTA+TGG | - | chr8.1:32578492-32578511 | MS.gene69976:intron | 30.0% | |
| TAGCAATGATGATACTAATG+AGG | + | chr8.1:32580185-32580204 | None:intergenic | 30.0% | |
| TATCTACGTCAGTATTTCAT+GGG | + | chr8.1:32579780-32579799 | None:intergenic | 30.0% | |
| TGATGATAATATACACTGCA+AGG | + | chr8.1:32579313-32579332 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCAGG+TGG | + | chr8.1:32580321-32580340 | None:intergenic | 30.0% | |
| TTCTATGATCAGGAAATATG+GGG | - | chr8.1:32578900-32578919 | MS.gene69976:CDS | 30.0% | |
| TTGTAAAATGTCTCTCCAAA+TGG | + | chr8.1:32578594-32578613 | None:intergenic | 30.0% | |
| ! | ACAAAGTTCGGTGAAATATA+AGG | - | chr8.1:32579169-32579188 | MS.gene69976:CDS | 30.0% |
| ! | ACTCTAAGGAACCTAATAAT+TGG | - | chr8.1:32579666-32579685 | MS.gene69976:intron | 30.0% |
| ! | AGAAATGGATTCAGATGAAA+AGG | + | chr8.1:32579747-32579766 | None:intergenic | 30.0% |
| ! | AGTTTTCAGTAATCCTTTTG+TGG | - | chr8.1:32580556-32580575 | MS.gene69976:CDS | 30.0% |
| ! | CAAGTCTTTTATGTGTAGAA+TGG | - | chr8.1:32579448-32579467 | MS.gene69976:intron | 30.0% |
| ! | CTCTTGATGATATGATATCA+TGG | - | chr8.1:32578208-32578227 | MS.gene69976:intron | 30.0% |
| ! | CTTTTCTTACTACCTGTTAT+TGG | - | chr8.1:32580207-32580226 | MS.gene69976:intron | 30.0% |
| ! | GCATTTCAATGTGATTTTGA+AGG | - | chr8.1:32580498-32580517 | MS.gene69976:intron | 30.0% |
| ! | GGTGAAATATAAGGCATTTA+AGG | - | chr8.1:32579178-32579197 | MS.gene69976:CDS | 30.0% |
| ! | TTTTTATGTCCTGAAATTGC+AGG | - | chr8.1:32580129-32580148 | MS.gene69976:intron | 30.0% |
| !! | CACATAAAAGACTTGCTATT+TGG | + | chr8.1:32579443-32579462 | None:intergenic | 30.0% |
| AAACTCACAGTAGCAATTGT+TGG | + | chr8.1:32579515-32579534 | None:intergenic | 35.0% | |
| AAACTGGCAAATATAAGTGC+AGG | + | chr8.1:32578174-32578193 | None:intergenic | 35.0% | |
| AACTCATTGTTTGTAGGGAT+GGG | - | chr8.1:32579980-32579999 | MS.gene69976:CDS | 35.0% | |
| ACTTTCTGATTACAGATTGC+AGG | + | chr8.1:32578947-32578966 | None:intergenic | 35.0% | |
| AGAAACACTCTTTGCAAAAC+TGG | + | chr8.1:32578190-32578209 | None:intergenic | 35.0% | |
| AGACTGAACTCATTGTTTGT+AGG | - | chr8.1:32579974-32579993 | MS.gene69976:CDS | 35.0% | |
| AGATTGAAAACGACTATGTC+CGG | + | chr8.1:32579914-32579933 | None:intergenic | 35.0% | |
| ATAGCATCAAAGTTATGGTC+TGG | - | chr8.1:32578497-32578516 | MS.gene69976:intron | 35.0% | |
| ATGATACTAATGAGGACCAA+TGG | + | chr8.1:32580177-32580196 | None:intergenic | 35.0% | |
| ATTAGTATCAAGGTCTGTGT+TGG | + | chr8.1:32579225-32579244 | None:intergenic | 35.0% | |
| ATTGAAACAAAGGGTCTAGA+GGG | + | chr8.1:32580272-32580291 | None:intergenic | 35.0% | |
| CTTTCTGATTACAGATTGCA+GGG | + | chr8.1:32578946-32578965 | None:intergenic | 35.0% | |
| GACTGAACTCATTGTTTGTA+GGG | - | chr8.1:32579975-32579994 | MS.gene69976:CDS | 35.0% | |
| GAGCATCTTGTCCAATTATT+AGG | + | chr8.1:32579680-32579699 | None:intergenic | 35.0% | |
| GAGTTTCTGCATTAGTATCA+AGG | + | chr8.1:32579235-32579254 | None:intergenic | 35.0% | |
| GCTTAACAATTATCCATCCA+AGG | + | chr8.1:32578418-32578437 | None:intergenic | 35.0% | |
| GCTTATATGTCAACTGACTA+TGG | - | chr8.1:32577803-32577822 | MS.gene69976:CDS | 35.0% | |
| GCTTCTATGATCAGGAAATA+TGG | - | chr8.1:32578898-32578917 | MS.gene69976:CDS | 35.0% | |
| GGCGTGAGTGAAATATTAAA+AGG | - | chr8.1:32578529-32578548 | MS.gene69976:intron | 35.0% | |
| GTTATTGCTTCTTGTTCATC+AGG | - | chr8.1:32578470-32578489 | MS.gene69976:intron | 35.0% | |
| TATTGAAACAAAGGGTCTAG+AGG | + | chr8.1:32580273-32580292 | None:intergenic | 35.0% | |
| TGGTAATAATCTTCTTGCAG+CGG | - | chr8.1:32577823-32577842 | MS.gene69976:CDS | 35.0% | |
| TTCATGATGCTTCTATGATC+AGG | - | chr8.1:32578890-32578909 | MS.gene69976:CDS | 35.0% | |
| TTCTGTTAACTGTTGTAGCT+TGG | - | chr8.1:32579107-32579126 | MS.gene69976:CDS | 35.0% | |
| TTGGTGGAGTTAAAACTCTA+AGG | - | chr8.1:32579652-32579671 | MS.gene69976:intron | 35.0% | |
| ! | ACTGTTTTCATAAGCTATCC+TGG | + | chr8.1:32578766-32578785 | None:intergenic | 35.0% |
| ! | AGCTTGGTGGTATTTACATT+TGG | - | chr8.1:32579123-32579142 | MS.gene69976:CDS | 35.0% |
| ! | CAGTATTTAGGTTTCCTCTT+TGG | - | chr8.1:32579633-32579652 | MS.gene69976:intron | 35.0% |
| ! | GTCTTTTATGTGTAGAATGG+TGG | - | chr8.1:32579451-32579470 | MS.gene69976:intron | 35.0% |
| ! | TATTTAGGTTTCCTCTTTGG+TGG | - | chr8.1:32579636-32579655 | MS.gene69976:intron | 35.0% |
| ! | TTTTTCTCTTTGGCGGTAAA+AGG | - | chr8.1:32579019-32579038 | MS.gene69976:intron | 35.0% |
| !! | GAGTCTTGAATCACTTTTAG+TGG | + | chr8.1:32579702-32579721 | None:intergenic | 35.0% |
| !! | GTAATCCTTTTGTGGTCTTA+TGG | - | chr8.1:32580564-32580583 | MS.gene69976:CDS | 35.0% |
| !! | TGTCTGGATTTGCTAATTTG+AGG | - | chr8.1:32578637-32578656 | MS.gene69976:intron | 35.0% |
| !!! | CTCGTACTCTTTTTTCTCTT+TGG | - | chr8.1:32579009-32579028 | MS.gene69976:intron | 35.0% |
| !!! | GAGTTTTTTGGAGCAATTGA+AGG | - | chr8.1:32577733-32577752 | MS.gene69976:CDS | 35.0% |
| !!! | GTACTCTTTTTTCTCTTTGG+CGG | - | chr8.1:32579012-32579031 | MS.gene69976:intron | 35.0% |
| !!! | TTTTTTGGAGCAATTGAAGG+TGG | - | chr8.1:32577736-32577755 | MS.gene69976:CDS | 35.0% |
| AAGACTCCATTCAGTTGCTA+GGG | - | chr8.1:32579715-32579734 | MS.gene69976:intron | 40.0% | |
| AAGCCAAACATGAAAGTGGA+AGG | - | chr8.1:32578443-32578462 | MS.gene69976:intron | 40.0% | |
| AATGTATTTGAGGGTCTGTC+TGG | - | chr8.1:32578621-32578640 | MS.gene69976:intron | 40.0% | |
| AGACCTTCCACTTTCATGTT+TGG | + | chr8.1:32578449-32578468 | None:intergenic | 40.0% | |
| ATCGGACTCACCTTCTTATT+TGG | - | chr8.1:32578386-32578405 | MS.gene69976:intron | 40.0% | |
| ATGACTCAGCTGTTTGATGT+AGG | - | chr8.1:32580525-32580544 | MS.gene69976:CDS | 40.0% | |
| ATTGCAGGGATGATTACAAC+TGG | + | chr8.1:32578932-32578951 | None:intergenic | 40.0% | |
| CATCAAAGTTATGGTCTGGT+TGG | - | chr8.1:32578501-32578520 | MS.gene69976:intron | 40.0% | |
| CTCAAGGGAAATGACAATGT+TGG | - | chr8.1:32579260-32579279 | MS.gene69976:intron | 40.0% | |
| CTCCAACTGCACTTATAAGT+AGG | + | chr8.1:32577784-32577803 | None:intergenic | 40.0% | |
| CTGCAAGGAGTCTTACTATT+TGG | + | chr8.1:32579298-32579317 | None:intergenic | 40.0% | |
| GAACTCATTGTTTGTAGGGA+TGG | - | chr8.1:32579979-32579998 | MS.gene69976:CDS | 40.0% | |
| GCAGAAACTCAACTTCTCAA+GGG | - | chr8.1:32579245-32579264 | MS.gene69976:intron | 40.0% | |
| GCTAAAGCCAAACATGAAAG+TGG | - | chr8.1:32578439-32578458 | MS.gene69976:intron | 40.0% | |
| GTCCTACTTATAAGTGCAGT+TGG | - | chr8.1:32577779-32577798 | MS.gene69976:CDS | 40.0% | |
| GTTAAAGCGGCTGCAAATTT+AGG | - | chr8.1:32580240-32580259 | MS.gene69976:intron | 40.0% | |
| TAATATTCATTGCAGGTGGC+AGG | + | chr8.1:32580317-32580336 | None:intergenic | 40.0% | |
| TACATCAAACAGCTGAGTCA+TGG | + | chr8.1:32580526-32580545 | None:intergenic | 40.0% | |
| TACTGTTCACTCATCAATGC+AGG | - | chr8.1:32578345-32578364 | MS.gene69976:CDS | 40.0% | |
| TGCAGAAACTCAACTTCTCA+AGG | - | chr8.1:32579244-32579263 | MS.gene69976:intron | 40.0% | |
| TGTACAAAGGTAGGACCATT+TGG | - | chr8.1:32578576-32578595 | MS.gene69976:intron | 40.0% | |
| TGTCTGATACTGACATGTGT+CGG | - | chr8.1:32579885-32579904 | MS.gene69976:CDS | 40.0% | |
| TGTTAACTGTTGTAGCTTGG+TGG | - | chr8.1:32579110-32579129 | MS.gene69976:CDS | 40.0% | |
| TTTGGTCAACATTCCTCCTA+TGG | - | chr8.1:32580610-32580629 | MS.gene69976:CDS | 40.0% | |
| ! | TGGTTTATGCCGGTTAACAT+CGG | - | chr8.1:32578368-32578387 | MS.gene69976:intron | 40.0% |
| !! | AGACTTGCTATTTGGTACAG+TGG | + | chr8.1:32579435-32579454 | None:intergenic | 40.0% |
| !! | CCAACTGATTCGACAAAGTT+CGG | - | chr8.1:32579157-32579176 | MS.gene69976:CDS | 40.0% |
| !! | TCGAATCAGTTGGTAAGTGA+AGG | + | chr8.1:32579150-32579169 | None:intergenic | 40.0% |
| !!! | GAGTTTTAACTCCACCAAAG+AGG | + | chr8.1:32579650-32579669 | None:intergenic | 40.0% |
| AAGGATCCCGCCAAATAAGA+AGG | + | chr8.1:32578399-32578418 | None:intergenic | 45.0% | |
| AAGGTGAGTCCGATGTTAAC+CGG | + | chr8.1:32578380-32578399 | None:intergenic | 45.0% | |
| AAGGTTGCCACCTAGCAAAA+GGG | + | chr8.1:32580022-32580041 | None:intergenic | 45.0% | |
| CAAGACTCCATTCAGTTGCT+AGG | - | chr8.1:32579714-32579733 | MS.gene69976:intron | 45.0% | |
| CACATACCCTAGCAACTGAA+TGG | + | chr8.1:32579724-32579743 | None:intergenic | 45.0% | |
| CAGCACCATAAGACCACAAA+AGG | + | chr8.1:32580572-32580591 | None:intergenic | 45.0% | |
| CAGCTATAGCACTCACTCTT+TGG | - | chr8.1:32580592-32580611 | MS.gene69976:CDS | 45.0% | |
| CAGGGATGATTACAACTGGA+AGG | + | chr8.1:32578928-32578947 | None:intergenic | 45.0% | |
| CCGAACTTTGTCGAATCAGT+TGG | + | chr8.1:32579160-32579179 | None:intergenic | 45.0% | |
| CTCACAGTAGCAATTGTTGG+AGG | + | chr8.1:32579512-32579531 | None:intergenic | 45.0% | |
| GATCGCATTCCTGCAATTTC+AGG | + | chr8.1:32580141-32580160 | None:intergenic | 45.0% | |
| TAAGGTTGCCACCTAGCAAA+AGG | + | chr8.1:32580023-32580042 | None:intergenic | 45.0% | |
| TCAATGCAGGTGGTTTATGC+CGG | - | chr8.1:32578358-32578377 | MS.gene69976:CDS | 45.0% | |
| TGGTCTACAAGCTGCACATT+TGG | + | chr8.1:32579404-32579423 | None:intergenic | 45.0% | |
| TGTTCACTCATCAATGCAGG+TGG | - | chr8.1:32578348-32578367 | MS.gene69976:CDS | 45.0% | |
| ! | CAAGCATCGTGTGTACCAAA+TGG | + | chr8.1:32578974-32578993 | None:intergenic | 45.0% |
| ! | GACTCACCTTCTTATTTGGC+GGG | - | chr8.1:32578390-32578409 | MS.gene69976:intron | 45.0% |
| ! | GGACTCACCTTCTTATTTGG+CGG | - | chr8.1:32578389-32578408 | MS.gene69976:intron | 45.0% |
| ! | GTTATGGTCTGGTTGGTACT+TGG | - | chr8.1:32578508-32578527 | MS.gene69976:intron | 45.0% |
| ! | TTCTTATTTGGCGGGATCCT+TGG | - | chr8.1:32578398-32578417 | MS.gene69976:intron | 45.0% |
| CCTAGCAAAAGGGTGATGCA+AGG | + | chr8.1:32580012-32580031 | None:intergenic | 50.0% | |
| CTAGGTGGCAACCTTACACA+AGG | - | chr8.1:32580027-32580046 | MS.gene69976:intron | 50.0% | |
| GAAACAAAGGGTCTAGAGGG+AGG | + | chr8.1:32580269-32580288 | None:intergenic | 50.0% | |
| TATTTGGCGGGATCCTTGGA+TGG | - | chr8.1:32578402-32578421 | MS.gene69976:intron | 50.0% | |
| TTGGTACAGTGGACAGAGCT+TGG | + | chr8.1:32579424-32579443 | None:intergenic | 50.0% | |
| ! | CCTTGCATCACCCTTTTGCT+AGG | - | chr8.1:32580009-32580028 | MS.gene69976:intron | 50.0% |
| ! | TACTGACATGTGTCGGTCAC+CGG | - | chr8.1:32579892-32579911 | MS.gene69976:CDS | 50.0% |
| ! | TGCATCACCCTTTTGCTAGG+TGG | - | chr8.1:32580012-32580031 | MS.gene69976:intron | 50.0% |
| !! | AGTACGAGAGTGCTCTAGTG+CGG | + | chr8.1:32578997-32579016 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 32577731 | 32580644 | 32577731 | ID=MS.gene69976 |
| chr8.1 | mRNA | 32577731 | 32580644 | 32577731 | ID=MS.gene69976.t1;Parent=MS.gene69976 |
| chr8.1 | exon | 32580507 | 32580644 | 32580507 | ID=MS.gene69976.t1.exon1;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32580507 | 32580644 | 32580507 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32580146 | 32580225 | 32580146 | ID=MS.gene69976.t1.exon2;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32580146 | 32580225 | 32580146 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32579884 | 32580008 | 32579884 | ID=MS.gene69976.t1.exon3;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32579884 | 32580008 | 32579884 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32579342 | 32579463 | 32579342 | ID=MS.gene69976.t1.exon4;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32579342 | 32579463 | 32579342 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32579074 | 32579250 | 32579074 | ID=MS.gene69976.t1.exon5;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32579074 | 32579250 | 32579074 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32578849 | 32578962 | 32578849 | ID=MS.gene69976.t1.exon6;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32578849 | 32578962 | 32578849 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32578639 | 32578739 | 32578639 | ID=MS.gene69976.t1.exon7;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32578639 | 32578739 | 32578639 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32578327 | 32578379 | 32578327 | ID=MS.gene69976.t1.exon8;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32578327 | 32578379 | 32578327 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32578039 | 32578224 | 32578039 | ID=MS.gene69976.t1.exon9;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32578039 | 32578224 | 32578039 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| chr8.1 | exon | 32577731 | 32577855 | 32577731 | ID=MS.gene69976.t1.exon10;Parent=MS.gene69976.t1 |
| chr8.1 | CDS | 32577731 | 32577855 | 32577731 | ID=cds.MS.gene69976.t1;Parent=MS.gene69976.t1 |
| Gene Sequence |
| Protein sequence |
