Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86524.t1 | XP_003612402.1 | 96.4 | 421 | 15 | 0 | 1 | 421 | 1 | 421 | 1.60E-221 | 778.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86524.t1 | Q9FKY4 | 56.0 | 420 | 160 | 2 | 1 | 420 | 1 | 395 | 8.0e-129 | 461.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86524.t1 | G7K1C1 | 96.4 | 421 | 15 | 0 | 1 | 421 | 1 | 421 | 1.1e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99561 | MS.gene86524 | PPI |
| MS.gene64907 | MS.gene86524 | PPI |
| MS.gene72672 | MS.gene86524 | PPI |
| MS.gene64908 | MS.gene86524 | PPI |
| MS.gene72673 | MS.gene86524 | PPI |
| MS.gene82524 | MS.gene86524 | PPI |
| MS.gene69976 | MS.gene86524 | PPI |
| MS.gene86524 | MS.gene86525 | PPI |
| MS.gene86524 | MS.gene64908 | PPI |
| MS.gene65344 | MS.gene86524 | PPI |
| MS.gene86524 | MS.gene066493 | PPI |
| MS.gene86524 | MS.gene23822 | PPI |
| MS.gene86523 | MS.gene86524 | PPI |
| MS.gene72674 | MS.gene86524 | PPI |
| MS.gene066493 | MS.gene86524 | PPI |
| MS.gene64906 | MS.gene86524 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86524.t1 | MTR_5g024640 | 96.437 | 421 | 15 | 0 | 1 | 421 | 1 | 421 | 0.0 | 823 |
| MS.gene86524.t1 | MTR_5g024660 | 89.286 | 420 | 45 | 0 | 1 | 420 | 1 | 420 | 0.0 | 769 |
| MS.gene86524.t1 | MTR_5g024640 | 96.053 | 380 | 15 | 0 | 1 | 380 | 1 | 380 | 0.0 | 741 |
| MS.gene86524.t1 | MTR_5g024520 | 76.010 | 421 | 35 | 2 | 1 | 421 | 1 | 355 | 0.0 | 612 |
| MS.gene86524.t1 | MTR_5g024640 | 95.333 | 300 | 14 | 0 | 1 | 300 | 1 | 300 | 0.0 | 583 |
| MS.gene86524.t1 | MTR_5g024560 | 93.985 | 266 | 16 | 0 | 156 | 421 | 35 | 300 | 0.0 | 514 |
| MS.gene86524.t1 | MTR_8g073160 | 60.000 | 420 | 127 | 5 | 1 | 420 | 1 | 379 | 5.68e-178 | 501 |
| MS.gene86524.t1 | MTR_5g024970 | 42.093 | 430 | 226 | 5 | 1 | 420 | 1 | 417 | 2.36e-123 | 364 |
| MS.gene86524.t1 | MTR_5g024970 | 39.825 | 457 | 225 | 6 | 1 | 420 | 1 | 444 | 9.13e-118 | 351 |
| MS.gene86524.t1 | MTR_8g072560 | 41.429 | 420 | 228 | 5 | 1 | 419 | 1 | 403 | 9.51e-115 | 342 |
| MS.gene86524.t1 | MTR_5g024580 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 5.99e-103 | 303 |
| MS.gene86524.t1 | MTR_5g024970 | 40.153 | 391 | 211 | 5 | 1 | 381 | 1 | 378 | 2.74e-102 | 309 |
| MS.gene86524.t1 | MTR_5g024970 | 42.297 | 357 | 184 | 4 | 74 | 420 | 9 | 353 | 4.98e-102 | 307 |
| MS.gene86524.t1 | MTR_8g006780 | 40.047 | 422 | 237 | 4 | 1 | 419 | 1 | 409 | 4.04e-97 | 296 |
| MS.gene86524.t1 | MTR_8g006775 | 35.238 | 420 | 266 | 3 | 1 | 419 | 1 | 415 | 2.89e-91 | 282 |
| MS.gene86524.t1 | MTR_5g024970 | 39.024 | 328 | 177 | 5 | 1 | 318 | 1 | 315 | 4.43e-79 | 247 |
| MS.gene86524.t1 | MTR_5g024970 | 38.387 | 310 | 168 | 5 | 1 | 300 | 1 | 297 | 6.96e-72 | 229 |
| MS.gene86524.t1 | MTR_5g024970 | 37.545 | 277 | 158 | 4 | 1 | 275 | 1 | 264 | 4.62e-60 | 196 |
| MS.gene86524.t1 | MTR_5g024970 | 37.545 | 277 | 158 | 4 | 1 | 275 | 1 | 264 | 8.84e-60 | 196 |
| MS.gene86524.t1 | MTR_7g074190 | 31.415 | 417 | 261 | 6 | 7 | 419 | 26 | 421 | 6.93e-59 | 198 |
| MS.gene86524.t1 | MTR_5g054950 | 28.409 | 440 | 286 | 9 | 7 | 421 | 17 | 452 | 6.20e-55 | 189 |
| MS.gene86524.t1 | MTR_8g006780 | 40.541 | 222 | 125 | 3 | 1 | 222 | 1 | 215 | 4.53e-50 | 172 |
| MS.gene86524.t1 | MTR_8g006780 | 44.624 | 186 | 98 | 2 | 236 | 419 | 157 | 339 | 1.29e-30 | 120 |
| MS.gene86524.t1 | MTR_1g108390 | 26.009 | 446 | 294 | 7 | 7 | 421 | 19 | 459 | 1.16e-49 | 175 |
| MS.gene86524.t1 | MTR_5g024530 | 95.714 | 70 | 3 | 0 | 1 | 70 | 1 | 70 | 3.60e-38 | 135 |
| MS.gene86524.t1 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 317 | 420 | 51 | 154 | 5.38e-32 | 119 |
| MS.gene86524.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 9.90e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86524.t1 | AT5G65980 | 55.952 | 420 | 160 | 2 | 1 | 420 | 1 | 395 | 2.45e-169 | 480 |
| MS.gene86524.t1 | AT2G17500 | 53.682 | 421 | 167 | 4 | 1 | 419 | 1 | 395 | 1.09e-164 | 468 |
| MS.gene86524.t1 | AT2G17500 | 53.682 | 421 | 167 | 4 | 1 | 419 | 1 | 395 | 1.09e-164 | 468 |
| MS.gene86524.t1 | AT2G17500 | 53.682 | 421 | 167 | 4 | 1 | 419 | 1 | 395 | 1.09e-164 | 468 |
| MS.gene86524.t1 | AT2G17500 | 53.682 | 421 | 167 | 4 | 1 | 419 | 1 | 395 | 1.09e-164 | 468 |
| MS.gene86524.t1 | AT5G65980 | 54.593 | 381 | 148 | 2 | 1 | 381 | 1 | 356 | 2.16e-148 | 426 |
| MS.gene86524.t1 | AT1G76520 | 39.529 | 425 | 215 | 8 | 3 | 420 | 1 | 390 | 8.63e-111 | 331 |
| MS.gene86524.t1 | AT1G76520 | 39.529 | 425 | 215 | 8 | 3 | 420 | 1 | 390 | 8.63e-111 | 331 |
| MS.gene86524.t1 | AT1G20925 | 37.381 | 420 | 227 | 6 | 1 | 420 | 89 | 472 | 1.33e-103 | 315 |
| MS.gene86524.t1 | AT1G76530 | 38.621 | 435 | 232 | 7 | 1 | 420 | 1 | 415 | 7.77e-97 | 296 |
| MS.gene86524.t1 | AT1G76530 | 38.621 | 435 | 232 | 7 | 1 | 420 | 1 | 415 | 7.77e-97 | 296 |
| MS.gene86524.t1 | AT5G01990 | 32.353 | 408 | 260 | 7 | 7 | 411 | 28 | 422 | 8.94e-63 | 209 |
| MS.gene86524.t1 | AT1G71090 | 27.423 | 423 | 281 | 6 | 12 | 411 | 21 | 440 | 3.65e-50 | 176 |
| MS.gene86524.t1 | AT1G76530 | 44.048 | 168 | 91 | 2 | 1 | 168 | 1 | 165 | 5.34e-45 | 159 |
Find 74 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTATTTGGTGCCTTTA+TGG | 0.160159 | 5.1:+15214891 | None:intergenic |
| AAGCAGCTCATTGAGATTTA+AGG | 0.177124 | 5.1:-15214932 | MS.gene86524:CDS |
| GTTGGAATCACATTCTTAAT+TGG | 0.199861 | 5.1:-15215619 | MS.gene86524:CDS |
| TTTCCTTCAAGATCTTTATT+TGG | 0.230066 | 5.1:+15214880 | None:intergenic |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.1:+15214330 | None:intergenic |
| ATTATTGCTGCTTGTTCATC+AGG | 0.302286 | 5.1:-15215535 | MS.gene86524:intron |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.1:+15216060 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.1:-15216123 | MS.gene86524:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.1:-15216112 | MS.gene86524:CDS |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5.1:+15215773 | None:intergenic |
| AGACCTTCCACTTTCAAGTT+AGG | 0.328007 | 5.1:+15215559 | None:intergenic |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.1:-15214315 | MS.gene86524:CDS |
| AATGTGATTCCAACATTAAC+AGG | 0.334937 | 5.1:+15215628 | None:intergenic |
| TGGTTAAGGAACTTAATAAT+TGG | 0.345062 | 5.1:-15214363 | MS.gene86524:CDS |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.1:-15215257 | MS.gene86524:CDS |
| CCTTTCTCATCACATATTGC+TGG | 0.361228 | 5.1:+15215322 | None:intergenic |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.1:+15214316 | None:intergenic |
| TTGGCGCGGTTGCATGGTTA+AGG | 0.374002 | 5.1:-15214377 | MS.gene86524:CDS |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.1:+15213971 | None:intergenic |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.1:+15216135 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.1:+15214073 | None:intergenic |
| TATACATTATGTAGGTACTA+TGG | 0.404148 | 5.1:-15213547 | MS.gene86524:intron |
| TCCTCTTTGGCGCGGTTGCA+TGG | 0.411798 | 5.1:-15214383 | MS.gene86524:CDS |
| CAGCCATAGCTCTCACTGCT+TGG | 0.432625 | 5.1:-15213461 | MS.gene86524:CDS |
| TCTTATAGTTTGAAAAGTAT+AGG | 0.432637 | 5.1:+15214954 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.433109 | 5.1:+15215295 | None:intergenic |
| GAACTCACTATAGAAATTGC+TGG | 0.437401 | 5.1:+15214502 | None:intergenic |
| CTTGGTGGTAACCTCACTGC+TGG | 0.446908 | 5.1:-15214163 | MS.gene86524:CDS |
| CTTTAATTAACCAGGAAACA+TGG | 0.454338 | 5.1:-15215368 | MS.gene86524:intron |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.1:+15214013 | None:intergenic |
| GTGAAAGCCGCTGCTAGTTA+CGG | 0.455271 | 5.1:-15214052 | MS.gene86524:CDS |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.1:-15216124 | MS.gene86524:CDS |
| TGCTGGTGGCGATATTAGTT+CGG | 0.468313 | 5.1:+15214519 | None:intergenic |
| ATTGCTGGGATAATTACAAT+TGG | 0.474607 | 5.1:+15215337 | None:intergenic |
| TGCTAGTTACGGCTTTCTCC+CGG | 0.474979 | 5.1:-15214041 | MS.gene86524:CDS |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.1:-15215761 | MS.gene86524:intron |
| TGAATCACATACCTTGTTCA+AGG | 0.477557 | 5.1:+15216044 | None:intergenic |
| TGAGGCTGCTGAGACCATAA+AGG | 0.496562 | 5.1:-15214905 | MS.gene86524:CDS |
| GATGAGAAAGGAGGTCCATT+TGG | 0.502562 | 5.1:-15215310 | MS.gene86524:CDS |
| GGAATCACATTCTTAATTGG+AGG | 0.504072 | 5.1:-15215616 | MS.gene86524:CDS |
| ATTATTCGATTGTAGCTTGG+TGG | 0.506240 | 5.1:-15214991 | MS.gene86524:intron |
| CTTTCTCATCACATATTGCT+GGG | 0.510924 | 5.1:+15215323 | None:intergenic |
| ACTAAGACCTAACTTGAAAG+TGG | 0.514009 | 5.1:-15215566 | MS.gene86524:CDS |
| GCACCAAATAAAGATCTTGA+AGG | 0.514121 | 5.1:-15214883 | MS.gene86524:CDS |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.1:-15214014 | MS.gene86524:CDS |
| TACTGAAACAAAGGATCCAC+CGG | 0.528425 | 5.1:+15214022 | None:intergenic |
| GAATCACATTCTTAATTGGA+GGG | 0.535882 | 5.1:-15215615 | MS.gene86524:CDS |
| ATTGAGATTTAAGGCACTTG+AGG | 0.546011 | 5.1:-15214923 | MS.gene86524:CDS |
| TTTAATTAACCAGGAAACAT+GGG | 0.548770 | 5.1:-15215367 | MS.gene86524:intron |
| ACCATGCAACCGCGCCAAAG+AGG | 0.556288 | 5.1:+15214382 | None:intergenic |
| TCAGTCTCATGAATCGAAGA+AGG | 0.559071 | 5.1:-15214593 | MS.gene86524:CDS |
| CTTGGTCAACATTTCTCCTG+TGG | 0.562289 | 5.1:-15213443 | MS.gene86524:CDS |
| ATGGCTCAGCTGTTTGATGT+AGG | 0.563529 | 5.1:-15213528 | MS.gene86524:CDS |
| TTTAATAAGATAATAGCCAC+AGG | 0.569237 | 5.1:+15213427 | None:intergenic |
| AGTGTTCAGTTATTCTGTTG+TGG | 0.570064 | 5.1:-15213497 | MS.gene86524:CDS |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.1:-15214314 | MS.gene86524:intron |
| CCAGCAATATGTGATGAGAA+AGG | 0.578816 | 5.1:-15215322 | MS.gene86524:CDS |
| AGACCTAACTTGAAAGTGGA+AGG | 0.584175 | 5.1:-15215562 | MS.gene86524:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.1:+15215798 | None:intergenic |
| TGGTTTATGCCTGTTAATGT+TGG | 0.586550 | 5.1:-15215637 | MS.gene86524:CDS |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.1:+15213974 | None:intergenic |
| CAACGGTAACACTTCTATCA+CGG | 0.611802 | 5.1:+15214816 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.1:+15214118 | None:intergenic |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.1:-15214108 | MS.gene86524:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.1:+15214181 | None:intergenic |
| TAGTTACGGCTTTCTCCCGG+TGG | 0.641389 | 5.1:-15214038 | MS.gene86524:CDS |
| GAGAAAGCCGTAACTAGCAG+CGG | 0.645019 | 5.1:+15214045 | None:intergenic |
| GAGTCTTCAGTATAACTCAA+CGG | 0.661784 | 5.1:+15214799 | None:intergenic |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.1:-15214391 | MS.gene86524:CDS |
| TGACCAAGCAGTGAGAGCTA+TGG | 0.689222 | 5.1:+15213458 | None:intergenic |
| CTCACTATAGAAATTGCTGG+TGG | 0.693346 | 5.1:+15214505 | None:intergenic |
| GCAATATGTGATGAGAAAGG+AGG | 0.713358 | 5.1:-15215319 | MS.gene86524:CDS |
| ACTGAAACAAAGGATCCACC+GGG | 0.716942 | 5.1:+15214023 | None:intergenic |
| ATGATTTCAAGCCAGCAGTG+AGG | 0.732037 | 5.1:+15214152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATATTCTCAAATTATTAT+TGG | + | chr5.1:15214458-15214477 | None:intergenic | 15.0% |
| !!! | TTAAAATTTTCTAATTCATC+AGG | - | chr5.1:15214908-15214927 | MS.gene86524:CDS | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.1:15213804-15213823 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGATAAAGAAAA+GGG | + | chr5.1:15215122-15215141 | None:intergenic | 20.0% |
| !! | AATAGTAGATCATTTAATGT+TGG | - | chr5.1:15213894-15213913 | MS.gene86524:intron | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.1:15215372-15215391 | None:intergenic | 20.0% |
| !! | TGATGATATATACATTATGT+AGG | - | chr5.1:15216044-15216063 | MS.gene86524:intron | 20.0% |
| !!! | ATATCATCAAATTTGAAGTT+AGG | + | chr5.1:15216033-15216052 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+AGG | - | chr5.1:15215791-15215810 | MS.gene86524:CDS | 20.0% |
| !!! | GAACTTTGTTTTGTTTTTTT+TGG | - | chr5.1:15213741-15213760 | MS.gene86524:intron | 20.0% |
| !!! | TCTTATAGTTTGAAAAGTAT+AGG | + | chr5.1:15214648-15214667 | None:intergenic | 20.0% |
| !!! | TGGTTTTTATGAAGAAATTA+AGG | + | chr5.1:15215317-15215336 | None:intergenic | 20.0% |
| !!! | TTGAAAAAGTTTTACACTTA+GGG | + | chr5.1:15215752-15215771 | None:intergenic | 20.0% |
| ! | AACTTAATTCTTTGCAGAAA+TGG | - | chr5.1:15215388-15215407 | MS.gene86524:intron | 25.0% |
| ! | AATCTCATGTAATGTATCTA+TGG | + | chr5.1:15215717-15215736 | None:intergenic | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.1:15215529-15215548 | None:intergenic | 25.0% |
| ! | ATAATTATTCGATTGTAGCT+TGG | - | chr5.1:15214605-15214624 | MS.gene86524:CDS | 25.0% |
| ! | CAAGAAAGAAGATAAAGAAA+AGG | + | chr5.1:15215123-15215142 | None:intergenic | 25.0% |
| ! | CTTCACATTGAAAATGTATT+TGG | + | chr5.1:15213644-15213663 | None:intergenic | 25.0% |
| ! | GAAAGAAACAAATTGATTAC+TGG | + | chr5.1:15213929-15213948 | None:intergenic | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.1:15214223-15214242 | MS.gene86524:intron | 25.0% |
| ! | TAGGAACAACAATGTAATAT+AGG | + | chr5.1:15216014-15216033 | None:intergenic | 25.0% |
| ! | TATACATTATGTAGGTACTA+TGG | - | chr5.1:15216052-15216071 | MS.gene86524:intron | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.1:15215236-15215255 | MS.gene86524:intron | 25.0% |
| ! | TGTAAAAATCTATAGACTGT+CGG | - | chr5.1:15215972-15215991 | MS.gene86524:intron | 25.0% |
| ! | TGTTTCTTTCTGATTTATAC+AGG | - | chr5.1:15213939-15213958 | MS.gene86524:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.1:15214232-15214251 | MS.gene86524:intron | 25.0% |
| ! | TTTCCTTCAAGATCTTTATT+TGG | + | chr5.1:15214722-15214741 | None:intergenic | 25.0% |
| !! | GTTGAAAAAGTTTTACACTT+AGG | + | chr5.1:15215753-15215772 | None:intergenic | 25.0% |
| !! | TACAAAAGATGATTTGTGAA+CGG | + | chr5.1:15215782-15215801 | None:intergenic | 25.0% |
| !! | TGTCAATCAATCATAACTTT+TGG | + | chr5.1:15215951-15215970 | None:intergenic | 25.0% |
| !! | TTATTCCATGATCAGTTTTT+CGG | - | chr5.1:15215191-15215210 | MS.gene86524:intron | 25.0% |
| AACAAAGTTCCGATTAGAAT+CGG | + | chr5.1:15213731-15213750 | None:intergenic | 30.0% | |
| AATGTGATTCCAACATTAAC+AGG | + | chr5.1:15213974-15213993 | None:intergenic | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.1:15213467-15213486 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.1:15215589-15215608 | None:intergenic | 30.0% | |
| ATATGATATCATGGTACATG+TGG | - | chr5.1:15213847-15213866 | MS.gene86524:intron | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.1:15214265-15214284 | None:intergenic | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.1:15215631-15215650 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.1:15213838-15213857 | MS.gene86524:intron | 30.0% | |
| CCTGAAAATCAAAATAGTTG+AGG | + | chr5.1:15214973-15214992 | None:intergenic | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.1:15214231-15214250 | MS.gene86524:intron | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | chr5.1:15215346-15215365 | None:intergenic | 30.0% | |
| GAATCACATTCTTAATTGGA+GGG | - | chr5.1:15213984-15214003 | MS.gene86524:CDS | 30.0% | |
| GTTGGAATCACATTCTTAAT+TGG | - | chr5.1:15213980-15213999 | MS.gene86524:CDS | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.1:15215628-15215647 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.1:15213542-15213561 | None:intergenic | 30.0% | |
| TTCTTTCTGATTTATACAGG+TGG | - | chr5.1:15213942-15213961 | MS.gene86524:intron | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.1:15215285-15215304 | MS.gene86524:CDS | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.1:15213528-15213547 | MS.gene86524:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.1:15213829-15213848 | None:intergenic | 30.0% |
| ! | TAGAGACTTTAAGGACTATT+TGG | + | chr5.1:15215337-15215356 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.1:15215585-15215604 | MS.gene86524:CDS | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.1:15213992-15214011 | MS.gene86524:CDS | 30.0% |
| !! | ATCTTTATTTGGTGCCTTTA+TGG | + | chr5.1:15214711-15214730 | None:intergenic | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.1:15213544-15213563 | MS.gene86524:intron | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.1:15213433-15213452 | MS.gene86524:CDS | 30.0% |
| !!! | CCTCAACTATTTTGATTTTC+AGG | - | chr5.1:15214970-15214989 | MS.gene86524:CDS | 30.0% |
| AAAGCCAAATTGTAAGACCT+TGG | - | chr5.1:15214825-15214844 | MS.gene86524:CDS | 35.0% | |
| AAGAATACAACCTGCAAAAC+AGG | + | chr5.1:15213771-15213790 | None:intergenic | 35.0% | |
| AAGCAGCTCATTGAGATTTA+AGG | - | chr5.1:15214667-15214686 | MS.gene86524:intron | 35.0% | |
| AAGCCAAATTGTAAGACCTT+GGG | - | chr5.1:15214826-15214845 | MS.gene86524:CDS | 35.0% | |
| ACTAAGACCTAACTTGAAAG+TGG | - | chr5.1:15214033-15214052 | MS.gene86524:CDS | 35.0% | |
| AGTGTTCAGTTATTCTGTTG+TGG | - | chr5.1:15216102-15216121 | MS.gene86524:CDS | 35.0% | |
| ATTATTCGATTGTAGCTTGG+TGG | - | chr5.1:15214608-15214627 | MS.gene86524:CDS | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.1:15214342-15214361 | MS.gene86524:CDS | 35.0% | |
| CTTTCTCATCACATATTGCT+GGG | + | chr5.1:15214279-15214298 | None:intergenic | 35.0% | |
| GAACTCACTATAGAAATTGC+TGG | + | chr5.1:15215100-15215119 | None:intergenic | 35.0% | |
| GAGTCTTCAGTATAACTCAA+CGG | + | chr5.1:15214803-15214822 | None:intergenic | 35.0% | |
| GCACCAAATAAAGATCTTGA+AGG | - | chr5.1:15214716-15214735 | MS.gene86524:intron | 35.0% | |
| GGAATCACATTCTTAATTGG+AGG | - | chr5.1:15213983-15214002 | MS.gene86524:CDS | 35.0% | |
| GTGAAGAGCAAATATCTAAC+AGG | - | chr5.1:15213658-15213677 | MS.gene86524:intron | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.1:15215491-15215510 | MS.gene86524:intron | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.1:15213558-15213577 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.1:15213962-15213981 | MS.gene86524:intron | 35.0% | |
| TGTAACATAGCAGAGAAGAA+AGG | + | chr5.1:15215149-15215168 | None:intergenic | 35.0% | |
| ! | AATGCATAATTTAGCTCCCA+AGG | + | chr5.1:15214845-15214864 | None:intergenic | 35.0% |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.1:15213475-15213494 | MS.gene86524:CDS | 35.0% |
| ! | ATTATTGCTGCTTGTTCATC+AGG | - | chr5.1:15214064-15214083 | MS.gene86524:CDS | 35.0% |
| ! | ATTGAGATTTAAGGCACTTG+AGG | - | chr5.1:15214676-15214695 | MS.gene86524:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.1:15215284-15215303 | MS.gene86524:CDS | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.1:15213476-15213495 | MS.gene86524:CDS | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.1:15215272-15215291 | None:intergenic | 35.0% |
| ! | TCCTTTACTCTTGTTTCAGA+CGG | - | chr5.1:15214931-15214950 | MS.gene86524:CDS | 35.0% |
| !! | AGCTTGGTGGTATTTTTGTA+TGG | - | chr5.1:15214621-15214640 | MS.gene86524:intron | 35.0% |
| !! | ATCGACTTTTCCCTTTAGAA+GGG | + | chr5.1:15214756-15214775 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.1:15215286-15215305 | None:intergenic | 35.0% |
| !! | GTCATTGATTTGAGATTCCT+TGG | - | chr5.1:15213705-15213724 | MS.gene86524:intron | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.1:15213996-15214015 | MS.gene86524:CDS | 35.0% |
| !!! | TTTTGGTTTACCTGTTTTGC+AGG | - | chr5.1:15213758-15213777 | MS.gene86524:intron | 35.0% |
| AGACCTAACTTGAAAGTGGA+AGG | - | chr5.1:15214037-15214056 | MS.gene86524:CDS | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.1:15215484-15215503 | None:intergenic | 40.0% | |
| CAACGGTAACACTTCTATCA+CGG | + | chr5.1:15214786-15214805 | None:intergenic | 40.0% | |
| CCAGCAATATGTGATGAGAA+AGG | - | chr5.1:15214277-15214296 | MS.gene86524:intron | 40.0% | |
| CCTTTCTCATCACATATTGC+TGG | + | chr5.1:15214280-15214299 | None:intergenic | 40.0% | |
| CGTGTCTTCTATCAGAAGTA+TGG | - | chr5.1:15214524-15214543 | MS.gene86524:CDS | 40.0% | |
| CTCACTATAGAAATTGCTGG+TGG | + | chr5.1:15215097-15215116 | None:intergenic | 40.0% | |
| GCAATATGTGATGAGAAAGG+AGG | - | chr5.1:15214280-15214299 | MS.gene86524:intron | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.1:15215199-15215218 | None:intergenic | 40.0% | |
| TACTGAAACAAAGGATCCAC+CGG | + | chr5.1:15215580-15215599 | None:intergenic | 40.0% | |
| TCAGTCTCATGAATCGAAGA+AGG | - | chr5.1:15215006-15215025 | MS.gene86524:intron | 40.0% | |
| ! | ACCGTCTGAAACAAGAGTAA+AGG | + | chr5.1:15214935-15214954 | None:intergenic | 40.0% |
| ! | ATTCCTTGGCCGATTCTAAT+CGG | - | chr5.1:15213719-15213738 | MS.gene86524:intron | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.1:15215514-15215533 | MS.gene86524:intron | 40.0% |
| !! | AGACCTTCCACTTTCAAGTT+AGG | + | chr5.1:15214043-15214062 | None:intergenic | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.1:15215203-15215222 | MS.gene86524:intron | 40.0% |
| !! | TCAAGCACTGATTCAGACAT+CGG | - | chr5.1:15214410-15214429 | MS.gene86524:intron | 40.0% |
| !! | TCGACTTTTCCCTTTAGAAG+GGG | + | chr5.1:15214755-15214774 | None:intergenic | 40.0% |
| !!! | CATCGACTTTTCCCTTTAGA+AGG | + | chr5.1:15214757-15214776 | None:intergenic | 40.0% |
| ACTGAAACAAAGGATCCACC+GGG | + | chr5.1:15215579-15215598 | None:intergenic | 45.0% | |
| ATGATTTCAAGCCAGCAGTG+AGG | + | chr5.1:15215450-15215469 | None:intergenic | 45.0% | |
| ATGGCTCAGCTGTTTGATGT+AGG | - | chr5.1:15216071-15216090 | MS.gene86524:CDS | 45.0% | |
| CTTGGTCAACATTTCTCCTG+TGG | - | chr5.1:15216156-15216175 | MS.gene86524:CDS | 45.0% | |
| GATGAGAAAGGAGGTCCATT+TGG | - | chr5.1:15214289-15214308 | MS.gene86524:intron | 45.0% | |
| GCTCCCAAGGTCTTACAATT+TGG | + | chr5.1:15214832-15214851 | None:intergenic | 45.0% | |
| GTAGATACCCCCCTTCTAAA+GGG | - | chr5.1:15214743-15214762 | MS.gene86524:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.1:15213487-15213506 | MS.gene86524:CDS | 45.0% | |
| TGTAGATACCCCCCTTCTAA+AGG | - | chr5.1:15214742-15214761 | MS.gene86524:intron | 45.0% | |
| ! | ACTGATTCAGACATCGGACA+CGG | - | chr5.1:15214416-15214435 | MS.gene86524:intron | 45.0% |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.1:15215421-15215440 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.1:15215418-15215437 | MS.gene86524:intron | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.1:15215421-15215440 | MS.gene86524:intron | 45.0% |
| ! | TGCTGGTGGCGATATTAGTT+CGG | + | chr5.1:15215083-15215102 | None:intergenic | 45.0% |
| !! | CGACTTTTCCCTTTAGAAGG+GGG | + | chr5.1:15214754-15214773 | None:intergenic | 45.0% |
| !! | GACTTTTCCCTTTAGAAGGG+GGG | + | chr5.1:15214753-15214772 | None:intergenic | 45.0% |
| !!! | ATATTTCTAAAATATAATTT+TGG | - | chr5.1:15214098-15214117 | MS.gene86524:CDS | 5.0% |
| !!! | ATTAATACTATTTTTAATTT+AGG | + | chr5.1:15213582-15213601 | None:intergenic | 5.0% |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.1:15214307-15214326 | None:intergenic | 50.0% | |
| CGTCTGTGTCAATGCCATGT+CGG | - | chr5.1:15214493-15214512 | MS.gene86524:intron | 50.0% | |
| GAGAAAGCCGTAACTAGCAG+CGG | + | chr5.1:15215557-15215576 | None:intergenic | 50.0% | |
| GGCAAGTTTCCCATGTTTCC+TGG | + | chr5.1:15214244-15214263 | None:intergenic | 50.0% | |
| GTGAAAGCCGCTGCTAGTTA+CGG | - | chr5.1:15215547-15215566 | MS.gene86524:CDS | 50.0% | |
| GTTCCGATTAGAATCGGCCA+AGG | + | chr5.1:15213725-15213744 | None:intergenic | 50.0% | |
| TGACCAAGCAGTGAGAGCTA+TGG | + | chr5.1:15216144-15216163 | None:intergenic | 50.0% | |
| TGAGGCTGCTGAGACCATAA+AGG | - | chr5.1:15214694-15214713 | MS.gene86524:intron | 50.0% | |
| TGCTAGTTACGGCTTTCTCC+CGG | - | chr5.1:15215558-15215577 | MS.gene86524:CDS | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.1:15215208-15215227 | MS.gene86524:intron | 50.0% | |
| CAGCCATAGCTCTCACTGCT+TGG | - | chr5.1:15216138-15216157 | MS.gene86524:CDS | 55.0% | |
| GACACGTCTAGTGTCCGACA+TGG | + | chr5.1:15214510-15214529 | None:intergenic | 55.0% | |
| TAGTTACGGCTTTCTCCCGG+TGG | - | chr5.1:15215561-15215580 | MS.gene86524:CDS | 55.0% | |
| TTGGCGCGGTTGCATGGTTA+AGG | - | chr5.1:15215222-15215241 | MS.gene86524:intron | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+TGG | - | chr5.1:15215436-15215455 | MS.gene86524:intron | 55.0% |
| ACCATGCAACCGCGCCAAAG+AGG | + | chr5.1:15215220-15215239 | None:intergenic | 60.0% | |
| TCCTCTTTGGCGCGGTTGCA+TGG | - | chr5.1:15215216-15215235 | MS.gene86524:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15213428 | 15216193 | 15213428 | ID=MS.gene86524 |
| chr5.1 | mRNA | 15213428 | 15216193 | 15213428 | ID=MS.gene86524.t1;Parent=MS.gene86524 |
| chr5.1 | exon | 15216056 | 15216193 | 15216056 | ID=MS.gene86524.t1.exon1;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15216056 | 15216193 | 15216056 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15215762 | 15215841 | 15215762 | ID=MS.gene86524.t1.exon2;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15215762 | 15215841 | 15215762 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15215536 | 15215660 | 15215536 | ID=MS.gene86524.t1.exon3;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15215536 | 15215660 | 15215536 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15215255 | 15215376 | 15215255 | ID=MS.gene86524.t1.exon4;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15215255 | 15215376 | 15215255 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15214786 | 15214998 | 15214786 | ID=MS.gene86524.t1.exon5;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15214786 | 15214998 | 15214786 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15214510 | 15214629 | 15214510 | ID=MS.gene86524.t1.exon6;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15214510 | 15214629 | 15214510 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15214315 | 15214415 | 15214315 | ID=MS.gene86524.t1.exon7;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15214315 | 15214415 | 15214315 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15213978 | 15214216 | 15213978 | ID=MS.gene86524.t1.exon8;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15213978 | 15214216 | 15213978 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| chr5.1 | exon | 15213428 | 15213555 | 15213428 | ID=MS.gene86524.t1.exon9;Parent=MS.gene86524.t1 |
| chr5.1 | CDS | 15213428 | 15213555 | 15213428 | ID=cds.MS.gene86524.t1;Parent=MS.gene86524.t1 |
| Gene Sequence |
| Protein sequence |
