Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64906.t1 | XP_024639420.1 | 95.2 | 421 | 20 | 0 | 1 | 421 | 1 | 421 | 1.70E-218 | 768.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64906.t1 | Q9FKY4 | 54.8 | 420 | 165 | 2 | 1 | 420 | 1 | 395 | 1.8e-125 | 450.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64906.t1 | G7K1C1 | 92.2 | 421 | 33 | 0 | 1 | 421 | 1 | 421 | 1.4e-211 | 745.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057199 | MS.gene64906 | 0.82182 | 3.29E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64906 | MS.gene82524 | PPI |
| MS.gene99561 | MS.gene64906 | PPI |
| MS.gene64906 | MS.gene86525 | PPI |
| MS.gene64906 | MS.gene64908 | PPI |
| MS.gene64906 | MS.gene65344 | PPI |
| MS.gene64906 | MS.gene066493 | PPI |
| MS.gene64906 | MS.gene64907 | PPI |
| MS.gene64906 | MS.gene72673 | PPI |
| MS.gene64906 | MS.gene23822 | PPI |
| MS.gene64906 | MS.gene69976 | PPI |
| MS.gene64906 | MS.gene99561 | PPI |
| MS.gene72674 | MS.gene64906 | PPI |
| MS.gene64906 | MS.gene72672 | PPI |
| MS.gene64906 | MS.gene86523 | PPI |
| MS.gene64906 | MS.gene86524 | PPI |
| MS.gene64906 | MS.gene72674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64906.t1 | MTR_5g024640 | 92.162 | 421 | 33 | 0 | 1 | 421 | 1 | 421 | 0.0 | 787 |
| MS.gene64906.t1 | MTR_5g024660 | 89.286 | 420 | 45 | 0 | 1 | 420 | 1 | 420 | 0.0 | 765 |
| MS.gene64906.t1 | MTR_5g024640 | 92.084 | 379 | 30 | 0 | 1 | 379 | 1 | 379 | 0.0 | 709 |
| MS.gene64906.t1 | MTR_5g024520 | 74.109 | 421 | 43 | 2 | 1 | 421 | 1 | 355 | 0.0 | 599 |
| MS.gene64906.t1 | MTR_5g024640 | 91.667 | 300 | 25 | 0 | 1 | 300 | 1 | 300 | 0.0 | 560 |
| MS.gene64906.t1 | MTR_5g024560 | 90.357 | 280 | 24 | 1 | 142 | 421 | 24 | 300 | 0.0 | 511 |
| MS.gene64906.t1 | MTR_8g073160 | 59.762 | 420 | 128 | 5 | 1 | 420 | 1 | 379 | 6.90e-176 | 496 |
| MS.gene64906.t1 | MTR_5g024970 | 41.898 | 432 | 224 | 6 | 1 | 420 | 1 | 417 | 3.94e-122 | 361 |
| MS.gene64906.t1 | MTR_5g024970 | 39.651 | 459 | 223 | 7 | 1 | 420 | 1 | 444 | 1.29e-116 | 348 |
| MS.gene64906.t1 | MTR_8g072560 | 41.163 | 430 | 215 | 6 | 1 | 419 | 1 | 403 | 3.90e-114 | 340 |
| MS.gene64906.t1 | MTR_5g024580 | 92.169 | 166 | 13 | 0 | 1 | 166 | 1 | 166 | 8.29e-105 | 307 |
| MS.gene64906.t1 | MTR_5g024970 | 40.204 | 393 | 208 | 6 | 1 | 381 | 1 | 378 | 4.04e-102 | 308 |
| MS.gene64906.t1 | MTR_5g024970 | 42.061 | 359 | 182 | 5 | 74 | 420 | 9 | 353 | 5.47e-101 | 305 |
| MS.gene64906.t1 | MTR_8g006780 | 40.047 | 422 | 237 | 4 | 1 | 419 | 1 | 409 | 8.91e-98 | 298 |
| MS.gene64906.t1 | MTR_8g006775 | 36.000 | 425 | 256 | 6 | 1 | 419 | 1 | 415 | 3.10e-92 | 284 |
| MS.gene64906.t1 | MTR_5g024970 | 39.697 | 330 | 172 | 6 | 1 | 318 | 1 | 315 | 3.88e-80 | 250 |
| MS.gene64906.t1 | MTR_5g024970 | 39.103 | 312 | 163 | 6 | 1 | 300 | 1 | 297 | 4.75e-73 | 232 |
| MS.gene64906.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 3.15e-61 | 199 |
| MS.gene64906.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 6.44e-61 | 199 |
| MS.gene64906.t1 | MTR_7g074190 | 31.206 | 423 | 254 | 7 | 7 | 419 | 26 | 421 | 6.09e-58 | 196 |
| MS.gene64906.t1 | MTR_5g054950 | 28.182 | 440 | 287 | 9 | 7 | 421 | 17 | 452 | 1.62e-55 | 190 |
| MS.gene64906.t1 | MTR_1g108390 | 26.682 | 446 | 291 | 8 | 7 | 421 | 19 | 459 | 3.22e-51 | 179 |
| MS.gene64906.t1 | MTR_8g006780 | 39.912 | 228 | 130 | 3 | 1 | 228 | 1 | 221 | 3.29e-51 | 176 |
| MS.gene64906.t1 | MTR_8g006780 | 40.212 | 189 | 107 | 1 | 231 | 419 | 157 | 339 | 5.86e-29 | 116 |
| MS.gene64906.t1 | MTR_5g024530 | 95.714 | 70 | 3 | 0 | 1 | 70 | 1 | 70 | 3.49e-38 | 135 |
| MS.gene64906.t1 | MTR_5g024960 | 52.885 | 104 | 49 | 0 | 317 | 420 | 51 | 154 | 3.32e-31 | 117 |
| MS.gene64906.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 1.03e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64906.t1 | AT5G65980 | 54.762 | 420 | 165 | 2 | 1 | 420 | 1 | 395 | 5.67e-164 | 466 |
| MS.gene64906.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 2.54e-162 | 462 |
| MS.gene64906.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 2.54e-162 | 462 |
| MS.gene64906.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 2.54e-162 | 462 |
| MS.gene64906.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 2.54e-162 | 462 |
| MS.gene64906.t1 | AT5G65980 | 53.826 | 379 | 150 | 2 | 1 | 379 | 1 | 354 | 3.84e-144 | 415 |
| MS.gene64906.t1 | AT1G76520 | 39.059 | 425 | 217 | 7 | 3 | 420 | 1 | 390 | 8.80e-110 | 328 |
| MS.gene64906.t1 | AT1G76520 | 39.059 | 425 | 217 | 7 | 3 | 420 | 1 | 390 | 8.80e-110 | 328 |
| MS.gene64906.t1 | AT1G20925 | 37.767 | 421 | 224 | 7 | 1 | 420 | 89 | 472 | 9.16e-102 | 311 |
| MS.gene64906.t1 | AT1G76530 | 37.385 | 436 | 236 | 7 | 1 | 420 | 1 | 415 | 1.45e-94 | 290 |
| MS.gene64906.t1 | AT1G76530 | 37.385 | 436 | 236 | 7 | 1 | 420 | 1 | 415 | 1.45e-94 | 290 |
| MS.gene64906.t1 | AT5G01990 | 32.512 | 406 | 262 | 7 | 7 | 411 | 28 | 422 | 2.79e-63 | 210 |
| MS.gene64906.t1 | AT1G71090 | 27.316 | 421 | 280 | 8 | 12 | 409 | 21 | 438 | 8.65e-50 | 175 |
| MS.gene64906.t1 | AT1G76530 | 44.910 | 167 | 89 | 2 | 1 | 167 | 1 | 164 | 5.23e-45 | 159 |
Find 78 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGTCTTTA+TGG | 0.140203 | 5.3:+14247927 | None:intergenic |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.3:-14248634 | MS.gene64906:CDS |
| CCTTTCTCAGCGCATATTGC+TGG | 0.274602 | 5.3:+14248327 | None:intergenic |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.3:+14247293 | None:intergenic |
| CAGCCATAGCTCTCACTTCT+TGG | 0.283765 | 5.3:-14246602 | MS.gene64906:CDS |
| ATTATTGCTGCTTGTTCATC+AGG | 0.302286 | 5.3:-14248550 | MS.gene64906:intron |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.3:+14249057 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.3:+14248574 | None:intergenic |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5.3:+14248807 | None:intergenic |
| TGGTTAAGGAACTTAATAAT+TGG | 0.328372 | 5.3:-14247326 | MS.gene64906:CDS |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.3:-14247278 | MS.gene64906:CDS |
| TCCTCTTTGGCGCGGTTGAA+TGG | 0.337747 | 5.3:-14247346 | MS.gene64906:CDS |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.3:-14248262 | MS.gene64906:CDS |
| GTCCTACTTGTTAGTGCATT+GGG | 0.362882 | 5.3:-14249120 | MS.gene64906:CDS |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.3:+14247279 | None:intergenic |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.3:+14248643 | None:intergenic |
| TTGGCGCGGTTGAATGGTTA+AGG | 0.376725 | 5.3:-14247340 | MS.gene64906:CDS |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.379155 | 5.3:+14247916 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.3:+14247036 | None:intergenic |
| ACAAGTAGGACTTGAATAAC+TGG | 0.406530 | 5.3:+14249132 | None:intergenic |
| AACTTACCAATACTCATTGC+TGG | 0.425948 | 5.3:+14246934 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.3:+14248300 | None:intergenic |
| TCTTATAATTTGATAAGTAT+AGG | 0.432637 | 5.3:+14247990 | None:intergenic |
| TGAATCACATACCTTGTTCA+AGG | 0.444141 | 5.3:+14249041 | None:intergenic |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.3:+14246976 | None:intergenic |
| TGTAGATACTCCCCTTCTAA+AGG | 0.458680 | 5.3:-14247893 | MS.gene64906:CDS |
| TACTGAAACAAAGGATCCAC+TGG | 0.458962 | 5.3:+14246985 | None:intergenic |
| GTGCTCAGTTATTCTGTTGT+GGG | 0.460284 | 5.3:-14246637 | MS.gene64906:CDS |
| GCTGAGAAAGGAGGTCCATT+TGG | 0.463548 | 5.3:-14248315 | MS.gene64906:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.467575 | 5.3:+14248342 | None:intergenic |
| GTAGATACTCCCCTTCTAAA+GGG | 0.470111 | 5.3:-14247892 | MS.gene64906:CDS |
| CTTGGTGGTAACCTCACTGC+AGG | 0.471719 | 5.3:-14247126 | MS.gene64906:CDS |
| GAACTCACTACAGAAATTGC+TGG | 0.472890 | 5.3:+14247521 | None:intergenic |
| AGTCCTACTTGTTAGTGCAT+TGG | 0.473572 | 5.3:-14249121 | MS.gene64906:CDS |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.3:-14248795 | MS.gene64906:intron |
| CTTGGTCAACATTCCTCTTG+TGG | 0.479125 | 5.3:-14246584 | MS.gene64906:CDS |
| CTTTAATTAACCAGGAAACA+TGG | 0.484143 | 5.3:-14248373 | MS.gene64906:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.488484 | 5.3:-14248631 | MS.gene64906:CDS |
| CTTTCTCAGCGCATATTGCT+GGG | 0.493209 | 5.3:+14248328 | None:intergenic |
| ACACCAAACAAAGATCTTGA+AGG | 0.506701 | 5.3:-14247919 | MS.gene64906:CDS |
| AGTGCTCAGTTATTCTGTTG+TGG | 0.513059 | 5.3:-14246638 | MS.gene64906:CDS |
| ATATTTCGATTGTAGCTTGG+TGG | 0.513697 | 5.3:-14248027 | MS.gene64906:intron |
| TAAAATTCCTCCAATTAAGA+AGG | 0.522026 | 5.3:+14248624 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.3:-14246977 | MS.gene64906:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.3:-14248652 | MS.gene64906:CDS |
| ATTGAGATTTAATGCACTTG+AGG | 0.530333 | 5.3:-14247959 | MS.gene64906:CDS |
| CCAGCAATATGCGCTGAGAA+AGG | 0.531441 | 5.3:-14248327 | MS.gene64906:CDS |
| GGATATTAGTAAAATTACTA+AGG | 0.533486 | 5.3:-14248597 | MS.gene64906:CDS |
| ACTAAGGCCTAATTTGAAAG+TGG | 0.537496 | 5.3:-14248581 | MS.gene64906:CDS |
| TCAGTCTAATGAATTGATGA+AGG | 0.540881 | 5.3:-14247612 | MS.gene64906:CDS |
| ACCATTCAACCGCGCCAAAG+AGG | 0.558734 | 5.3:+14247345 | None:intergenic |
| TTTAATTAACCAGGAAACAT+GGG | 0.559242 | 5.3:-14248372 | MS.gene64906:intron |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.564939 | 5.3:-14248577 | MS.gene64906:CDS |
| ATGCCACCAGCAATGAGTAT+TGG | 0.565933 | 5.3:-14246940 | MS.gene64906:intron |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.3:-14247277 | MS.gene64906:intron |
| CGAAAACACCGTGATAGAAG+TGG | 0.574791 | 5.3:-14247860 | MS.gene64906:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.3:+14248832 | None:intergenic |
| CAACGGTGCCACTTCTATCA+CGG | 0.595633 | 5.3:+14247852 | None:intergenic |
| AATAAGATAATAGCCACAAG+AGG | 0.612170 | 5.3:+14246571 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.3:+14247081 | None:intergenic |
| AATTAACCAGGAAACATGGG+AGG | 0.625582 | 5.3:-14248369 | MS.gene64906:intron |
| CTCCCAATGCACTAACAAGT+AGG | 0.625966 | 5.3:+14249118 | None:intergenic |
| TAATTACAGCTTTCTCCCAG+TGG | 0.627923 | 5.3:-14247001 | MS.gene64906:CDS |
| GATACATTATGTAGGTACAA+TGG | 0.631901 | 5.3:-14246688 | MS.gene64906:intron |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.3:-14247071 | MS.gene64906:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.3:+14247144 | None:intergenic |
| GAGAAAGCTGTAATTAGCCG+CGG | 0.652127 | 5.3:+14247008 | None:intergenic |
| GCAATATGCGCTGAGAAAGG+AGG | 0.652370 | 5.3:-14248324 | MS.gene64906:CDS |
| ATTGTTTATTGTGAAAGCCG+CGG | 0.663100 | 5.3:-14247025 | MS.gene64906:CDS |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.3:-14247354 | MS.gene64906:CDS |
| GAGTCTTCAATATAACTCAA+CGG | 0.668737 | 5.3:+14247835 | None:intergenic |
| CTCACTACAGAAATTGCTGG+TGG | 0.681820 | 5.3:+14247524 | None:intergenic |
| TTACCAATACTCATTGCTGG+TGG | 0.682899 | 5.3:+14246937 | None:intergenic |
| ATGGCTCAGCTGTTTGACGT+AGG | 0.688475 | 5.3:-14246669 | MS.gene64906:CDS |
| TGACCAAGAAGTGAGAGCTA+TGG | 0.691891 | 5.3:+14246599 | None:intergenic |
| ACTGAAACAAAGGATCCACT+GGG | 0.692332 | 5.3:+14246986 | None:intergenic |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.3:+14247115 | None:intergenic |
| CATATGAGAGTGCATTACTG+TGG | 0.758442 | 5.3:+14248277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAGATCATTTAATGT+TGG | - | chr5.3:14247018-14247037 | MS.gene64906:CDS | 15.0% |
| !! | ATGAAAAACTTAATCTAAAA+TGG | - | chr5.3:14247322-14247341 | MS.gene64906:CDS | 15.0% |
| !! | TCTTATAATTTGATAAGTAT+AGG | + | chr5.3:14247750-14247769 | None:intergenic | 15.0% |
| !! | TGTAAAAATTTATAGACAAT+CGG | - | chr5.3:14248972-14248991 | MS.gene64906:intron | 15.0% |
| !!! | ATTGTTAAATTTGAAACAAA+TGG | + | chr5.3:14248343-14248362 | None:intergenic | 15.0% |
| !!! | GTTAAAATTTTCTAATTCAT+CGG | - | chr5.3:14248012-14248031 | MS.gene64906:CDS | 15.0% |
| !!! | TGATTTTTATGAAGAAATTA+AGG | + | chr5.3:14248492-14248511 | None:intergenic | 15.0% |
| !!! | TTAAAATTTTCTAATTCATC+GGG | - | chr5.3:14248013-14248032 | MS.gene64906:CDS | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.3:14246908-14246927 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAGAAAGAAAA+AGG | + | chr5.3:14248241-14248260 | None:intergenic | 20.0% |
| !! | AGAATAAACAAATTGATTAC+TGG | + | chr5.3:14247053-14247072 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.3:14248547-14248566 | None:intergenic | 20.0% |
| !! | ATTATTATTGACGACAAATT+CGG | + | chr5.3:14246996-14247015 | None:intergenic | 20.0% |
| !! | CATTAAATTCATACAAAAGA+TGG | + | chr5.3:14248894-14248913 | None:intergenic | 20.0% |
| !! | GGATATTAGTAAAATTACTA+AGG | - | chr5.3:14247140-14247159 | MS.gene64906:CDS | 20.0% |
| !! | TAGGAACAACAATATAATAT+AGG | + | chr5.3:14249014-14249033 | None:intergenic | 20.0% |
| !! | TCATATTCTCAAATTATTGT+TGG | + | chr5.3:14247559-14247578 | None:intergenic | 20.0% |
| !! | TTGTTTATTCTGATTTATAC+AGG | - | chr5.3:14247062-14247081 | MS.gene64906:CDS | 20.0% |
| !!! | AAAAAGTATATAGCATAATC+TGG | + | chr5.3:14247956-14247975 | None:intergenic | 20.0% |
| !!! | AAATACCATAATCAGTTTTT+CGG | - | chr5.3:14248366-14248385 | MS.gene64906:intron | 20.0% |
| !!! | AGTAAAAAGTTTTACACTTA+CGG | + | chr5.3:14248853-14248872 | None:intergenic | 20.0% |
| !!! | ATTATCATTGTCTGAAATAA+AGG | + | chr5.3:14248060-14248079 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+TGG | - | chr5.3:14248892-14248911 | MS.gene64906:intron | 20.0% |
| !!! | TAAAATTTTCTAATTCATCG+GGG | - | chr5.3:14248014-14248033 | MS.gene64906:CDS | 20.0% |
| !!! | TTTTTTAATTTACCTTTTGC+AGG | - | chr5.3:14246862-14246881 | MS.gene64906:intron | 20.0% |
| ! | AAAAGAAGTAGAGACTTTAA+GGG | + | chr5.3:14248520-14248539 | None:intergenic | 25.0% |
| ! | AACTTAATTCTTTGCAGAAA+TGG | - | chr5.3:14248563-14248582 | MS.gene64906:CDS | 25.0% |
| ! | AATGTCTTCTATAAGAAGTA+TGG | - | chr5.3:14247626-14247645 | MS.gene64906:CDS | 25.0% |
| ! | AATTCGATGATACATTATGT+AGG | - | chr5.3:14249041-14249060 | MS.gene64906:intron | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.3:14248704-14248723 | None:intergenic | 25.0% |
| ! | ACATAATATAGCATCAAAGT+TGG | - | chr5.3:14247292-14247311 | MS.gene64906:CDS | 25.0% |
| ! | ATAATATTTCGATTGTAGCT+TGG | - | chr5.3:14247707-14247726 | MS.gene64906:intron | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | chr5.3:14246951-14246970 | MS.gene64906:CDS | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.3:14247356-14247375 | MS.gene64906:CDS | 25.0% |
| ! | TAAAATTCCTCCAATTAAGA+AGG | + | chr5.3:14247116-14247135 | None:intergenic | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.3:14248411-14248430 | MS.gene64906:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.3:14247365-14247384 | MS.gene64906:intron | 25.0% |
| ! | TTTATTCTGATTTATACAGG+TGG | - | chr5.3:14247065-14247084 | MS.gene64906:CDS | 25.0% |
| !! | AAAGATGGTTTGTAATTGAT+CGG | + | chr5.3:14248879-14248898 | None:intergenic | 25.0% |
| !! | TTCTTAATTGGAGGAATTTT+AGG | - | chr5.3:14247115-14247134 | MS.gene64906:CDS | 25.0% |
| !! | TTTTACTGATCCAAAAGTTA+TGG | - | chr5.3:14248938-14248957 | MS.gene64906:intron | 25.0% |
| !!! | TATCATCGAATTTTGAAGTT+AGG | + | chr5.3:14249033-14249052 | None:intergenic | 25.0% |
| AATAAGATAATAGCCACAAG+AGG | + | chr5.3:14249169-14249188 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.3:14248764-14248783 | None:intergenic | 30.0% | |
| ATTGAGATTTAATGCACTTG+AGG | - | chr5.3:14247778-14247797 | MS.gene64906:intron | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.3:14247398-14247417 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.3:14246942-14246961 | MS.gene64906:CDS | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.3:14247364-14247383 | MS.gene64906:intron | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | chr5.3:14248521-14248540 | None:intergenic | 30.0% | |
| GAGTCTTCAATATAACTCAA+CGG | + | chr5.3:14247905-14247924 | None:intergenic | 30.0% | |
| GATACATTATGTAGGTACAA+TGG | - | chr5.3:14249049-14249068 | MS.gene64906:intron | 30.0% | |
| GTGAAGAGCAAATATTTAAC+AGG | - | chr5.3:14246801-14246820 | MS.gene64906:intron | 30.0% | |
| TAAAGAATACAACCTGCAAA+AGG | + | chr5.3:14246877-14246896 | None:intergenic | 30.0% | |
| TCAGTCTAATGAATTGATGA+AGG | - | chr5.3:14248125-14248144 | MS.gene64906:intron | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.3:14246683-14246702 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.3:14247824-14247843 | None:intergenic | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.3:14248460-14248479 | MS.gene64906:intron | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.3:14246669-14246688 | MS.gene64906:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.3:14246933-14246952 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.3:14248760-14248779 | MS.gene64906:intron | 30.0% |
| ! | TCTCAACTATCTTGATTTTC+AGG | - | chr5.3:14248089-14248108 | MS.gene64906:intron | 30.0% |
| ! | TGTCAATCAACCATAACTTT+TGG | + | chr5.3:14248951-14248970 | None:intergenic | 30.0% |
| ! | TTGTCTGAAATAAAGGTTGA+AGG | + | chr5.3:14248053-14248072 | None:intergenic | 30.0% |
| !! | ATCTTTGTTTGGTGTCTTTA+TGG | + | chr5.3:14247813-14247832 | None:intergenic | 30.0% |
| !! | TAATTGGAGGAATTTTAGGA+TGG | - | chr5.3:14247119-14247138 | MS.gene64906:CDS | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.3:14246685-14246704 | MS.gene64906:intron | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.3:14246574-14246593 | MS.gene64906:CDS | 30.0% |
| AACTTACCAATACTCATTGC+TGG | + | chr5.3:14248806-14248825 | None:intergenic | 35.0% | |
| ACAAGTAGGACTTGAATAAC+TGG | + | chr5.3:14246608-14246627 | None:intergenic | 35.0% | |
| ACACCAAACAAAGATCTTGA+AGG | - | chr5.3:14247818-14247837 | MS.gene64906:intron | 35.0% | |
| ACTAAGGCCTAATTTGAAAG+TGG | - | chr5.3:14247156-14247175 | MS.gene64906:CDS | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.3:14247166-14247185 | None:intergenic | 35.0% | |
| ATATTTCGATTGTAGCTTGG+TGG | - | chr5.3:14247710-14247729 | MS.gene64906:intron | 35.0% | |
| ATTGTTTATTGTGAAAGCCG+CGG | - | chr5.3:14248712-14248731 | MS.gene64906:intron | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.3:14247475-14247494 | MS.gene64906:intron | 35.0% | |
| GAAATAAAGGTTGAAGGACT+AGG | + | chr5.3:14248047-14248066 | None:intergenic | 35.0% | |
| GGAAACCGAAAAACTGATTA+TGG | + | chr5.3:14248374-14248393 | None:intergenic | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.3:14248666-14248685 | MS.gene64906:intron | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.3:14246699-14246718 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.3:14247085-14247104 | MS.gene64906:CDS | 35.0% | |
| ! | ATTATTGCTGCTTGTTCATC+AGG | - | chr5.3:14247187-14247206 | MS.gene64906:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.3:14248459-14248478 | MS.gene64906:intron | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.3:14248447-14248466 | None:intergenic | 35.0% |
| !! | AGCTTGGTGGTATTTTCATA+TGG | - | chr5.3:14247723-14247742 | MS.gene64906:intron | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.3:14248461-14248480 | None:intergenic | 35.0% |
| !! | GTTGTCTTTTCCCTTTAGAA+GGG | + | chr5.3:14247858-14247877 | None:intergenic | 35.0% |
| !! | TTGTCTTTTCCCTTTAGAAG+GGG | + | chr5.3:14247857-14247876 | None:intergenic | 35.0% |
| AAAGCCAAATCGTAAGACCT+CGG | - | chr5.3:14247927-14247946 | MS.gene64906:CDS | 40.0% | |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.3:14247097-14247116 | None:intergenic | 40.0% | |
| AATTAACCAGGAAACATGGG+AGG | - | chr5.3:14247368-14247387 | MS.gene64906:intron | 40.0% | |
| ACTGAAACAAAGGATCCACT+GGG | + | chr5.3:14248754-14248773 | None:intergenic | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.3:14247160-14247179 | MS.gene64906:CDS | 40.0% | |
| AGTGCTCAGTTATTCTGTTG+TGG | - | chr5.3:14249099-14249118 | MS.gene64906:CDS | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.3:14248659-14248678 | None:intergenic | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.3:14247483-14247502 | MS.gene64906:intron | 40.0% | |
| GAACTCACTACAGAAATTGC+TGG | + | chr5.3:14248219-14248238 | None:intergenic | 40.0% | |
| GTAGATACTCCCCTTCTAAA+GGG | - | chr5.3:14247845-14247864 | MS.gene64906:CDS | 40.0% | |
| GTGCTCAGTTATTCTGTTGT+GGG | - | chr5.3:14249100-14249119 | MS.gene64906:CDS | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.3:14247103-14247122 | MS.gene64906:CDS | 40.0% | |
| TAATTACAGCTTTCTCCCAG+TGG | - | chr5.3:14248736-14248755 | MS.gene64906:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+TGG | + | chr5.3:14248755-14248774 | None:intergenic | 40.0% | |
| TGTAGATACTCCCCTTCTAA+AGG | - | chr5.3:14247844-14247863 | MS.gene64906:CDS | 40.0% | |
| TTACCAATACTCATTGCTGG+TGG | + | chr5.3:14248803-14248822 | None:intergenic | 40.0% | |
| ! | AGTCCTACTTGTTAGTGCAT+TGG | - | chr5.3:14246616-14246635 | MS.gene64906:CDS | 40.0% |
| ! | CATATGAGAGTGCATTACTG+TGG | + | chr5.3:14247463-14247482 | None:intergenic | 40.0% |
| ! | CGTTGTCTTTTCCCTTTAGA+AGG | + | chr5.3:14247859-14247878 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.3:14248689-14248708 | MS.gene64906:intron | 40.0% |
| ! | GTCCTACTTGTTAGTGCATT+GGG | - | chr5.3:14246617-14246636 | MS.gene64906:CDS | 40.0% |
| ! | TAGTGCATTGGGAGCTTTTA+TGG | - | chr5.3:14246628-14246647 | MS.gene64906:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.3:14248378-14248397 | MS.gene64906:intron | 40.0% |
| !! | GACATTTCTAGTGTCTGACA+TGG | + | chr5.3:14247612-14247631 | None:intergenic | 40.0% |
| AAGCCAAATCGTAAGACCTC+GGG | - | chr5.3:14247928-14247947 | MS.gene64906:CDS | 45.0% | |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.3:14248625-14248644 | None:intergenic | 45.0% | |
| ATGCCACCAGCAATGAGTAT+TGG | - | chr5.3:14248797-14248816 | MS.gene64906:CDS | 45.0% | |
| CGAAAACACCGTGATAGAAG+TGG | - | chr5.3:14247877-14247896 | MS.gene64906:CDS | 45.0% | |
| CTCACTACAGAAATTGCTGG+TGG | + | chr5.3:14248216-14248235 | None:intergenic | 45.0% | |
| CTCCCAATGCACTAACAAGT+AGG | + | chr5.3:14246622-14246641 | None:intergenic | 45.0% | |
| CTTGGTCAACATTCCTCTTG+TGG | - | chr5.3:14249153-14249172 | MS.gene64906:CDS | 45.0% | |
| CTTTCTCAGCGCATATTGCT+GGG | + | chr5.3:14247412-14247431 | None:intergenic | 45.0% | |
| GAGAAAGCTGTAATTAGCCG+CGG | + | chr5.3:14248732-14248751 | None:intergenic | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.3:14247106-14247125 | MS.gene64906:CDS | 45.0% | |
| TGACCAAGAAGTGAGAGCTA+TGG | + | chr5.3:14249141-14249160 | None:intergenic | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.3:14248596-14248615 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.3:14248593-14248612 | MS.gene64906:CDS | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.3:14248596-14248615 | MS.gene64906:CDS | 45.0% |
| !!! | ATATTTCTAAAATATTTTTT+TGG | - | chr5.3:14247221-14247240 | MS.gene64906:intron | 5.0% |
| !!! | TATATACTTTTTTTTTTAAT+TGG | - | chr5.3:14247964-14247983 | MS.gene64906:CDS | 5.0% |
| ATGGCTCAGCTGTTTGACGT+AGG | - | chr5.3:14249068-14249087 | MS.gene64906:CDS | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.3:14247440-14247459 | None:intergenic | 50.0% | |
| CAGCCATAGCTCTCACTTCT+TGG | - | chr5.3:14249135-14249154 | MS.gene64906:CDS | 50.0% | |
| CCAGCAATATGCGCTGAGAA+AGG | - | chr5.3:14247410-14247429 | MS.gene64906:intron | 50.0% | |
| CCTTTCTCAGCGCATATTGC+TGG | + | chr5.3:14247413-14247432 | None:intergenic | 50.0% | |
| CGATGTGTCAGTGTCGTGTT+CGG | + | chr5.3:14247533-14247552 | None:intergenic | 50.0% | |
| GCAATATGCGCTGAGAAAGG+AGG | - | chr5.3:14247413-14247432 | MS.gene64906:intron | 50.0% | |
| GCTGAGAAAGGAGGTCCATT+TGG | - | chr5.3:14247422-14247441 | MS.gene64906:intron | 50.0% | |
| TTGGCGCGGTTGAATGGTTA+AGG | - | chr5.3:14248397-14248416 | MS.gene64906:intron | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.3:14248383-14248402 | MS.gene64906:intron | 50.0% | |
| ! | ATAGCATAATCTGGCTCCCG+AGG | + | chr5.3:14247947-14247966 | None:intergenic | 50.0% |
| !! | CAACGGTGCCACTTCTATCA+CGG | + | chr5.3:14247888-14247907 | None:intergenic | 50.0% |
| ACCATTCAACCGCGCCAAAG+AGG | + | chr5.3:14248395-14248414 | None:intergenic | 55.0% | |
| GCTCCCGAGGTCTTACGATT+TGG | + | chr5.3:14247934-14247953 | None:intergenic | 55.0% | |
| TCCTCTTTGGCGCGGTTGAA+TGG | - | chr5.3:14248391-14248410 | MS.gene64906:intron | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+AGG | - | chr5.3:14248611-14248630 | MS.gene64906:CDS | 55.0% |
| GGCAAGCCTCCCATGTTTCC+TGG | + | chr5.3:14247377-14247396 | None:intergenic | 60.0% | |
| !! | GTGTTCGGTGTCGACGTGTC+AGG | + | chr5.3:14247518-14247537 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14246569 | 14249190 | 14246569 | ID=MS.gene64906 |
| chr5.3 | mRNA | 14246569 | 14249190 | 14246569 | ID=MS.gene64906.t1;Parent=MS.gene64906 |
| chr5.3 | exon | 14249053 | 14249190 | 14249053 | ID=MS.gene64906.t1.exon1;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14249053 | 14249190 | 14249053 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14248796 | 14248875 | 14248796 | ID=MS.gene64906.t1.exon2;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14248796 | 14248875 | 14248796 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14248551 | 14248675 | 14248551 | ID=MS.gene64906.t1.exon3;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14248551 | 14248675 | 14248551 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14248260 | 14248381 | 14248260 | ID=MS.gene64906.t1.exon4;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14248260 | 14248381 | 14248260 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14247822 | 14248034 | 14247822 | ID=MS.gene64906.t1.exon5;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14247822 | 14248034 | 14247822 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14247529 | 14247648 | 14247529 | ID=MS.gene64906.t1.exon6;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14247529 | 14247648 | 14247529 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14247278 | 14247378 | 14247278 | ID=MS.gene64906.t1.exon7;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14247278 | 14247378 | 14247278 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14246941 | 14247179 | 14246941 | ID=MS.gene64906.t1.exon8;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14246941 | 14247179 | 14246941 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| chr5.3 | exon | 14246569 | 14246696 | 14246569 | ID=MS.gene64906.t1.exon9;Parent=MS.gene64906.t1 |
| chr5.3 | CDS | 14246569 | 14246696 | 14246569 | ID=cds.MS.gene64906.t1;Parent=MS.gene64906.t1 |
| Gene Sequence |
| Protein sequence |
