Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64908.t1 | XP_003612404.1 | 94 | 420 | 25 | 0 | 1 | 420 | 1 | 420 | 2.70E-213 | 751.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64908.t1 | Q9FKY4 | 55.4 | 424 | 156 | 3 | 1 | 420 | 1 | 395 | 1.0e-128 | 461.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64908.t1 | G7K1C3 | 94.0 | 420 | 25 | 0 | 1 | 420 | 1 | 420 | 2.0e-213 | 751.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82524 | MS.gene64908 | PPI |
| MS.gene64908 | MS.gene86524 | PPI |
| MS.gene86523 | MS.gene64908 | PPI |
| MS.gene72674 | MS.gene64908 | PPI |
| MS.gene65344 | MS.gene64908 | PPI |
| MS.gene066493 | MS.gene64908 | PPI |
| MS.gene64906 | MS.gene64908 | PPI |
| MS.gene64907 | MS.gene64908 | PPI |
| MS.gene64908 | MS.gene23822 | PPI |
| MS.gene64908 | MS.gene86525 | PPI |
| MS.gene86524 | MS.gene64908 | PPI |
| MS.gene64908 | MS.gene066493 | PPI |
| MS.gene99561 | MS.gene64908 | PPI |
| MS.gene72672 | MS.gene64908 | PPI |
| MS.gene69976 | MS.gene64908 | PPI |
| MS.gene72673 | MS.gene64908 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64908.t1 | MTR_5g024660 | 97.381 | 420 | 11 | 0 | 1 | 420 | 1 | 420 | 0.0 | 824 |
| MS.gene64908.t1 | MTR_5g024640 | 89.786 | 421 | 43 | 0 | 1 | 421 | 1 | 421 | 0.0 | 771 |
| MS.gene64908.t1 | MTR_5g024640 | 88.684 | 380 | 43 | 0 | 1 | 380 | 1 | 380 | 0.0 | 689 |
| MS.gene64908.t1 | MTR_5g024520 | 80.048 | 421 | 18 | 2 | 1 | 421 | 1 | 355 | 0.0 | 643 |
| MS.gene64908.t1 | MTR_5g024640 | 87.667 | 300 | 37 | 0 | 1 | 300 | 1 | 300 | 0.0 | 543 |
| MS.gene64908.t1 | MTR_8g073160 | 61.905 | 420 | 119 | 4 | 1 | 420 | 1 | 379 | 0.0 | 519 |
| MS.gene64908.t1 | MTR_5g024560 | 82.857 | 280 | 45 | 1 | 142 | 421 | 24 | 300 | 1.65e-167 | 472 |
| MS.gene64908.t1 | MTR_5g024970 | 42.791 | 430 | 223 | 5 | 1 | 420 | 1 | 417 | 2.66e-125 | 369 |
| MS.gene64908.t1 | MTR_5g024970 | 40.481 | 457 | 222 | 6 | 1 | 420 | 1 | 444 | 7.47e-120 | 356 |
| MS.gene64908.t1 | MTR_8g072560 | 41.549 | 426 | 219 | 6 | 1 | 419 | 1 | 403 | 4.31e-116 | 345 |
| MS.gene64908.t1 | MTR_5g024970 | 43.137 | 357 | 181 | 4 | 74 | 420 | 9 | 353 | 1.07e-104 | 314 |
| MS.gene64908.t1 | MTR_5g024970 | 40.921 | 391 | 208 | 5 | 1 | 381 | 1 | 378 | 2.25e-104 | 314 |
| MS.gene64908.t1 | MTR_5g024580 | 88.554 | 166 | 19 | 0 | 1 | 166 | 1 | 166 | 1.74e-102 | 301 |
| MS.gene64908.t1 | MTR_8g006780 | 42.654 | 422 | 226 | 5 | 1 | 419 | 1 | 409 | 6.92e-102 | 309 |
| MS.gene64908.t1 | MTR_8g006775 | 36.131 | 429 | 250 | 9 | 1 | 419 | 1 | 415 | 1.42e-89 | 278 |
| MS.gene64908.t1 | MTR_5g024970 | 39.939 | 328 | 174 | 5 | 1 | 318 | 1 | 315 | 5.57e-81 | 252 |
| MS.gene64908.t1 | MTR_5g024970 | 39.355 | 310 | 165 | 5 | 1 | 300 | 1 | 297 | 6.37e-74 | 234 |
| MS.gene64908.t1 | MTR_5g024970 | 37.546 | 269 | 154 | 3 | 1 | 268 | 1 | 256 | 3.66e-61 | 199 |
| MS.gene64908.t1 | MTR_5g024970 | 37.546 | 269 | 154 | 3 | 1 | 268 | 1 | 256 | 9.47e-61 | 198 |
| MS.gene64908.t1 | MTR_7g074190 | 31.490 | 416 | 262 | 6 | 7 | 419 | 26 | 421 | 7.21e-58 | 195 |
| MS.gene64908.t1 | MTR_5g054950 | 28.959 | 442 | 281 | 9 | 7 | 421 | 17 | 452 | 2.72e-56 | 192 |
| MS.gene64908.t1 | MTR_1g108390 | 27.740 | 447 | 285 | 9 | 7 | 421 | 19 | 459 | 7.71e-53 | 183 |
| MS.gene64908.t1 | MTR_8g006780 | 49.359 | 156 | 79 | 0 | 1 | 156 | 1 | 156 | 5.71e-50 | 172 |
| MS.gene64908.t1 | MTR_8g006780 | 45.946 | 185 | 95 | 2 | 237 | 419 | 158 | 339 | 2.76e-32 | 125 |
| MS.gene64908.t1 | MTR_5g024530 | 88.571 | 70 | 8 | 0 | 1 | 70 | 1 | 70 | 8.32e-36 | 129 |
| MS.gene64908.t1 | MTR_5g024960 | 53.846 | 104 | 48 | 0 | 317 | 420 | 51 | 154 | 1.51e-32 | 120 |
| MS.gene64908.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 1.10e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64908.t1 | AT5G65980 | 55.476 | 420 | 162 | 2 | 1 | 420 | 1 | 395 | 9.27e-169 | 479 |
| MS.gene64908.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 1.66e-160 | 458 |
| MS.gene64908.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 1.66e-160 | 458 |
| MS.gene64908.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 1.66e-160 | 458 |
| MS.gene64908.t1 | AT2G17500 | 52.494 | 421 | 172 | 4 | 1 | 419 | 1 | 395 | 1.66e-160 | 458 |
| MS.gene64908.t1 | AT5G65980 | 53.786 | 383 | 152 | 2 | 1 | 383 | 1 | 358 | 1.33e-147 | 424 |
| MS.gene64908.t1 | AT1G76520 | 40.143 | 421 | 218 | 7 | 3 | 420 | 1 | 390 | 3.21e-110 | 330 |
| MS.gene64908.t1 | AT1G76520 | 40.143 | 421 | 218 | 7 | 3 | 420 | 1 | 390 | 3.21e-110 | 330 |
| MS.gene64908.t1 | AT1G20925 | 38.480 | 421 | 221 | 6 | 1 | 420 | 89 | 472 | 7.95e-106 | 321 |
| MS.gene64908.t1 | AT1G76530 | 38.605 | 430 | 239 | 6 | 1 | 420 | 1 | 415 | 2.99e-95 | 292 |
| MS.gene64908.t1 | AT1G76530 | 38.605 | 430 | 239 | 6 | 1 | 420 | 1 | 415 | 2.99e-95 | 292 |
| MS.gene64908.t1 | AT5G01990 | 32.512 | 406 | 262 | 7 | 7 | 411 | 28 | 422 | 1.91e-64 | 213 |
| MS.gene64908.t1 | AT1G71090 | 28.369 | 423 | 277 | 8 | 12 | 411 | 21 | 440 | 3.44e-54 | 187 |
| MS.gene64908.t1 | AT1G76530 | 45.238 | 168 | 89 | 2 | 1 | 168 | 1 | 165 | 2.98e-45 | 160 |
Find 79 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGATCATTGAAATTTA+AGG | 0.144664 | 5.3:-14274454 | MS.gene64908:CDS |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.3:-14274981 | MS.gene64908:CDS |
| CTTGGTCAACATTTCTCTTA+TGG | 0.228788 | 5.3:-14273152 | MS.gene64908:CDS |
| GAGCATTATCACCAATTATT+AGG | 0.231554 | 5.3:+14273814 | None:intergenic |
| CCTTTCTCATTACATATTGC+AGG | 0.286843 | 5.3:+14274741 | None:intergenic |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.3:+14275494 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.3:+14274921 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.3:-14275557 | MS.gene64908:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.3:-14275546 | MS.gene64908:CDS |
| CAAGACACTCTTGAATTACT+TGG | 0.332662 | 5.3:-14273777 | MS.gene64908:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.3:+14274990 | None:intergenic |
| AGCTTGGTGGTATCTTCATA+TGG | 0.376262 | 5.3:-14274500 | MS.gene64908:CDS |
| TTTCCATCAAGATCTTTGTT+TGG | 0.380708 | 5.3:+14274402 | None:intergenic |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.3:+14273454 | None:intergenic |
| GTGAAAACCGCGGCGAGTTT+CGG | 0.382303 | 5.3:-14273535 | MS.gene64908:CDS |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.3:+14275569 | None:intergenic |
| ACAATAAACAAGCCAATAAC+AGG | 0.384460 | 5.3:+14273556 | None:intergenic |
| TGGTTAAGGAACCTAATAAT+TGG | 0.386910 | 5.3:-14273825 | MS.gene64908:CDS |
| TCGGCGCGGTTGCATGGTTA+AGG | 0.387370 | 5.3:-14273839 | MS.gene64908:CDS |
| ATTATTGCTTCATGTTCATC+AGG | 0.388417 | 5.3:-14274897 | MS.gene64908:intron |
| AAACTAACTGTTGCAATTGC+TGG | 0.391515 | 5.3:+14273967 | None:intergenic |
| TATATATTATGCAGGTACTA+TGG | 0.394662 | 5.3:-14273256 | MS.gene64908:intron |
| ACCTAGCAAAAGGGTGATGC+AGG | 0.412797 | 5.3:+14273663 | None:intergenic |
| TGAATCACATACCTTGTTCA+AGG | 0.417909 | 5.3:+14275478 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.3:+14274714 | None:intergenic |
| TCCTCTTCGGCGCGGTTGCA+TGG | 0.431756 | 5.3:-14273845 | MS.gene64908:CDS |
| CAGCCATAGCTCTCACTGCT+TGG | 0.432625 | 5.3:-14273170 | MS.gene64908:CDS |
| TCTTATAGTTTGATAAGTAT+AGG | 0.432637 | 5.3:+14274476 | None:intergenic |
| TTGCTTCATTTCTAGCTTGG+TGG | 0.435651 | 5.3:-14274513 | MS.gene64908:intron |
| CTTTAATTAATCAGGAAACA+TGG | 0.436248 | 5.3:-14274787 | MS.gene64908:intron |
| CTCGTATGCATCTTTCTCTA+TGG | 0.442668 | 5.3:-14274676 | MS.gene64908:CDS |
| GCACCAAACAAAGATCTTGA+TGG | 0.446090 | 5.3:-14274405 | MS.gene64908:CDS |
| TGCAGATACTCCCCTTCTAA+AGG | 0.449404 | 5.3:-14274379 | MS.gene64908:CDS |
| AATGAGAAAGGAGGTCCATT+TGG | 0.452048 | 5.3:-14274729 | MS.gene64908:CDS |
| TGAGGTTACCACCTAGCAAA+AGG | 0.453284 | 5.3:+14273653 | None:intergenic |
| ACCAGAGTGTACTGAAACAA+TGG | 0.454657 | 5.3:+14273496 | None:intergenic |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.3:-14275558 | MS.gene64908:CDS |
| TACTGAAACAATGGATCCAC+TGG | 0.463953 | 5.3:+14273505 | None:intergenic |
| GCAGATACTCCCCTTCTAAA+GGG | 0.471997 | 5.3:-14274378 | MS.gene64908:CDS |
| ATTGCAGGGATGATTACAAT+TGG | 0.480547 | 5.3:+14274756 | None:intergenic |
| CACTTGAAGATATGATATCA+TGG | 0.485558 | 5.3:-14275143 | MS.gene64908:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.3:-14274978 | MS.gene64908:CDS |
| TTTAATTAATCAGGAAACAT+GGG | 0.512740 | 5.3:-14274786 | MS.gene64908:intron |
| CAAGTAATTCAAGAGTGTCT+TGG | 0.514562 | 5.3:+14273778 | None:intergenic |
| CTAGGTGGTAACCTCACTGC+AGG | 0.516204 | 5.3:-14273646 | MS.gene64908:CDS |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.3:-14274977 | MS.gene64908:CDS |
| CTTTCTCATTACATATTGCA+GGG | 0.518940 | 5.3:+14274742 | None:intergenic |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.3:+14274971 | None:intergenic |
| ATGGCTCAGTTGTTTGATGT+AGG | 0.522905 | 5.3:-14273237 | MS.gene64908:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.3:-14274999 | MS.gene64908:CDS |
| ATTGAAATTTAAGGCACTTG+AGG | 0.531428 | 5.3:-14274445 | MS.gene64908:CDS |
| TCAGTCAATTGTATTGAAGA+AGG | 0.539190 | 5.3:-14274058 | MS.gene64908:CDS |
| CCTGCAATATGTAATGAGAA+AGG | 0.540032 | 5.3:-14274741 | MS.gene64908:CDS |
| TGAGGCTGTTGAGATTCTAA+AGG | 0.543868 | 5.3:-14274427 | MS.gene64908:CDS |
| ACCATGCAACCGCGCCGAAG+AGG | 0.548813 | 5.3:+14273844 | None:intergenic |
| ACTGAGGCCTAATTTGAAAG+TGG | 0.556128 | 5.3:-14274928 | MS.gene64908:CDS |
| ATGATGCTGATCAGTGTCAA+TGG | 0.556763 | 5.3:+14273601 | None:intergenic |
| AAGACACTCTTGAATTACTT+GGG | 0.561735 | 5.3:-14273776 | MS.gene64908:intron |
| AGTGTTCAGTTATTCTGTTG+TGG | 0.570064 | 5.3:-14273206 | MS.gene64908:CDS |
| GAGGTTACCACCTAGCAAAA+GGG | 0.572920 | 5.3:+14273654 | None:intergenic |
| GTGTCTTGGATAACACTGAA+TGG | 0.577387 | 5.3:+14273792 | None:intergenic |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.586714 | 5.3:-14274924 | MS.gene64908:CDS |
| TCCATTGTTTCAGTACACTC+TGG | 0.591585 | 5.3:-14273497 | MS.gene64908:CDS |
| AAACTTGCAAACACAAGTGA+AGG | 0.598059 | 5.3:+14275180 | None:intergenic |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.3:+14273457 | None:intergenic |
| CCTAGCAAAAGGGTGATGCA+GGG | 0.642605 | 5.3:+14273664 | None:intergenic |
| GAGTCTTCAATATAACTCGA+TGG | 0.644317 | 5.3:+14274321 | None:intergenic |
| TGATCAGCATCATTATAACT+CGG | 0.644729 | 5.3:-14273591 | MS.gene64908:CDS |
| GAGTTTCGGCATTCTCCCAG+TGG | 0.672011 | 5.3:-14273521 | MS.gene64908:CDS |
| GCAATATGTAATGAGAAAGG+AGG | 0.679242 | 5.3:-14274738 | MS.gene64908:CDS |
| CTAACTGTTGCAATTGCTGG+TGG | 0.683218 | 5.3:+14273970 | None:intergenic |
| CTTGTTTATTGTGAAAACCG+CGG | 0.687149 | 5.3:-14273545 | MS.gene64908:CDS |
| TGACCAAGCAGTGAGAGCTA+TGG | 0.689222 | 5.3:+14273167 | None:intergenic |
| ACTGAAACAATGGATCCACT+GGG | 0.696241 | 5.3:+14273506 | None:intergenic |
| GGATATTAGTAAAATTACTG+AGG | 0.706826 | 5.3:-14274944 | MS.gene64908:CDS |
| CATACGAGAGTGCATTACTG+TGG | 0.718919 | 5.3:+14274691 | None:intergenic |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.3:+14273635 | None:intergenic |
| TTTCGGTTTCCTCTTCGGCG+CGG | 0.730222 | 5.3:-14273853 | MS.gene64908:CDS |
| GAGAATGCCGAAACTCGCCG+CGG | 0.782084 | 5.3:+14273528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAATCAATTTAAATATT+AGG | - | chr5.3:14273301-14273320 | MS.gene64908:intron | 10.0% |
| !!! | TATCATTAAATTTTTAAGTT+AGG | + | chr5.3:14275468-14275487 | None:intergenic | 10.0% |
| !! | GAATTATTCTTTAATTAATC+AGG | - | chr5.3:14273947-14273966 | MS.gene64908:intron | 15.0% |
| !! | TTTAAACTATAAATACGAAT+AGG | + | chr5.3:14274109-14274128 | None:intergenic | 15.0% |
| !! | TTTAATGATATATATTATGC+AGG | - | chr5.3:14275478-14275497 | MS.gene64908:intron | 15.0% |
| !!! | AAACATTTTTAATGATCTTA+CGG | - | chr5.3:14274132-14274151 | MS.gene64908:intron | 15.0% |
| !!! | TATTTTGTATTTATGATTGA+AGG | + | chr5.3:14274998-14275017 | None:intergenic | 15.0% |
| !! | CTAACATAACAACTAATATA+CGG | + | chr5.3:14274517-14274536 | None:intergenic | 20.0% |
| !! | GATAGATCATAATTTAATGT+TGG | - | chr5.3:14273700-14273719 | MS.gene64908:intron | 20.0% |
| !! | TCTTATAGTTTGATAAGTAT+AGG | + | chr5.3:14274269-14274288 | None:intergenic | 20.0% |
| !! | TGGTTATGTTAATTTAATAC+AGG | - | chr5.3:14273720-14273739 | MS.gene64908:intron | 20.0% |
| !! | TTATGTTAATTTAATACAGG+TGG | - | chr5.3:14273723-14273742 | MS.gene64908:intron | 20.0% |
| !! | TTTAATTAATCAGGAAACAT+GGG | - | chr5.3:14273956-14273975 | MS.gene64908:intron | 20.0% |
| !!! | TAGTATTTTCTCATTTATCA+GGG | - | chr5.3:14274534-14274553 | MS.gene64908:intron | 20.0% |
| !!! | TGTTGTTTTAATTGAAGTAA+CGG | - | chr5.3:14275330-14275349 | MS.gene64908:intron | 20.0% |
| !!! | TTAGTATTTTCTCATTTATC+AGG | - | chr5.3:14274533-14274552 | MS.gene64908:intron | 20.0% |
| ! | AAGCAAAATGTTTAAATGTG+AGG | + | chr5.3:14274215-14274234 | None:intergenic | 25.0% |
| ! | AAGCAGATCATTGAAATTTA+AGG | - | chr5.3:14274288-14274307 | MS.gene64908:intron | 25.0% |
| ! | ATTAAAACAACATACATGCA+TGG | + | chr5.3:14275322-14275341 | None:intergenic | 25.0% |
| ! | CTTTAATTAATCAGGAAACA+TGG | - | chr5.3:14273955-14273974 | MS.gene64908:intron | 25.0% |
| ! | GGATATTAGTAAAATTACTG+AGG | - | chr5.3:14273798-14273817 | MS.gene64908:CDS | 25.0% |
| ! | GTAAAAATTCTTTACACTGA+CGG | - | chr5.3:14274173-14274192 | MS.gene64908:intron | 25.0% |
| ! | GTGAAGAACAAATATTTATC+AGG | - | chr5.3:14273358-14273377 | MS.gene64908:intron | 25.0% |
| ! | TATATATTATGCAGGTACTA+TGG | - | chr5.3:14275486-14275505 | MS.gene64908:intron | 25.0% |
| !! | ATATTCCATGATCAGTTTTT+CGG | - | chr5.3:14274872-14274891 | MS.gene64908:intron | 25.0% |
| !! | ATTCCTGAAAAGAATTGTTT+TGG | + | chr5.3:14275049-14275068 | None:intergenic | 25.0% |
| !! | TAACCAAAACAATTCTTTTC+AGG | - | chr5.3:14275043-14275062 | MS.gene64908:intron | 25.0% |
| !! | TCATCTGAAATAAGAGTTAA+AGG | + | chr5.3:14274582-14274601 | None:intergenic | 25.0% |
| !!! | AAAACAATTCTTTTCAGGAA+TGG | - | chr5.3:14275048-14275067 | MS.gene64908:intron | 25.0% |
| !!! | AAAGTAGTGACTTTTTCTTT+TGG | - | chr5.3:14273494-14273513 | MS.gene64908:CDS | 25.0% |
| !!! | AGCAATTAACTTTGATTTGA+TGG | + | chr5.3:14273888-14273907 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTTCTTGTTTTGT+AGG | - | chr5.3:14273519-14273538 | MS.gene64908:CDS | 25.0% |
| AAGACACTCTTGAATTACTT+GGG | - | chr5.3:14274966-14274985 | MS.gene64908:CDS | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.3:14273176-14273195 | None:intergenic | 30.0% | |
| ACAATAAACAAGCCAATAAC+AGG | + | chr5.3:14275189-14275208 | None:intergenic | 30.0% | |
| ATAAGAGTTAAAGGAGTTGA+AGG | + | chr5.3:14274573-14274592 | None:intergenic | 30.0% | |
| ATTATTGCTTCATGTTCATC+AGG | - | chr5.3:14273845-14273864 | MS.gene64908:CDS | 30.0% | |
| ATTTATCAGGGTTTGAATTC+AGG | - | chr5.3:14274546-14274565 | MS.gene64908:intron | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.3:14275291-14275310 | None:intergenic | 30.0% | |
| CACTTGAAGATATGATATCA+TGG | - | chr5.3:14273599-14273618 | MS.gene64908:CDS | 30.0% | |
| CTTTCTCATTACATATTGCA+GGG | + | chr5.3:14274003-14274022 | None:intergenic | 30.0% | |
| GAAAAAAAGTAGACACTTGA+AGG | + | chr5.3:14275023-14275042 | None:intergenic | 30.0% | |
| GAAAAACTGATCATGGAATA+TGG | + | chr5.3:14274873-14274892 | None:intergenic | 30.0% | |
| GAGCATTATCACCAATTATT+AGG | + | chr5.3:14274931-14274950 | None:intergenic | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.3:14273774-14273793 | None:intergenic | 30.0% | |
| TAGACATAATCTAGATCAAG+AGG | + | chr5.3:14274466-14274485 | None:intergenic | 30.0% | |
| TCAGTCAATTGTATTGAAGA+AGG | - | chr5.3:14274684-14274703 | MS.gene64908:CDS | 30.0% | |
| TGATCAGCATCATTATAACT+CGG | - | chr5.3:14275151-14275170 | MS.gene64908:CDS | 30.0% | |
| TGGTTAAGGAACCTAATAAT+TGG | - | chr5.3:14274917-14274936 | MS.gene64908:CDS | 30.0% | |
| TGTGACACATTTATTGATCT+TGG | + | chr5.3:14273437-14273456 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.3:14275288-14275307 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.3:14273251-14273270 | None:intergenic | 30.0% | |
| TTTCCATCAAGATCTTTGTT+TGG | + | chr5.3:14274343-14274362 | None:intergenic | 30.0% | |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.3:14273237-14273256 | MS.gene64908:CDS | 30.0% |
| ! | ATTGAAATTTAAGGCACTTG+AGG | - | chr5.3:14274297-14274316 | MS.gene64908:intron | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.3:14273773-14273792 | MS.gene64908:intron | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.3:14273253-14273272 | MS.gene64908:intron | 30.0% |
| !!! | ATCGTTTTTTCCCTTTAGAA+GGG | + | chr5.3:14274377-14274396 | None:intergenic | 30.0% |
| !!! | ATTTTGCTTCATTTCTAGCT+TGG | - | chr5.3:14274226-14274245 | MS.gene64908:intron | 30.0% |
| AAACTAACTGTTGCAATTGC+TGG | + | chr5.3:14274778-14274797 | None:intergenic | 35.0% | |
| AAACTGATCATGGAATATGG+AGG | + | chr5.3:14274870-14274889 | None:intergenic | 35.0% | |
| AAACTTGCAAACACAAGTGA+AGG | + | chr5.3:14273565-14273584 | None:intergenic | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.3:14273824-14273843 | None:intergenic | 35.0% | |
| AGTGTTCAGTTATTCTGTTG+TGG | - | chr5.3:14275536-14275555 | MS.gene64908:CDS | 35.0% | |
| ATTGCAGGGATGATTACAAT+TGG | + | chr5.3:14273989-14274008 | None:intergenic | 35.0% | |
| CAAGACACTCTTGAATTACT+TGG | - | chr5.3:14274965-14274984 | MS.gene64908:CDS | 35.0% | |
| CCTGCAATATGTAATGAGAA+AGG | - | chr5.3:14274001-14274020 | MS.gene64908:CDS | 35.0% | |
| CCTTTCTCATTACATATTGC+AGG | + | chr5.3:14274004-14274023 | None:intergenic | 35.0% | |
| CTTGGTCAACATTTCTCTTA+TGG | - | chr5.3:14275590-14275609 | MS.gene64908:CDS | 35.0% | |
| CTTGTTTATTGTGAAAACCG+CGG | - | chr5.3:14275197-14275216 | MS.gene64908:CDS | 35.0% | |
| GAGTCTTCAATATAACTCGA+TGG | + | chr5.3:14274424-14274443 | None:intergenic | 35.0% | |
| GCAATATGTAATGAGAAAGG+AGG | - | chr5.3:14274004-14274023 | MS.gene64908:CDS | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.3:14273267-14273286 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.3:14273743-14273762 | MS.gene64908:intron | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.3:14273184-14273203 | MS.gene64908:CDS | 35.0% |
| ! | GAGTTAGTTTCTGAGAATAG+TGG | + | chr5.3:14273646-14273665 | None:intergenic | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.3:14273185-14273204 | MS.gene64908:CDS | 35.0% |
| !! | CAAGTAATTCAAGAGTGTCT+TGG | + | chr5.3:14274967-14274986 | None:intergenic | 35.0% |
| !! | GCCATTGATTTGAGATTTGA+CGG | - | chr5.3:14273411-14273430 | MS.gene64908:intron | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.3:14273777-14273796 | MS.gene64908:CDS | 35.0% |
| !! | TTTTGTGCAACTTTTGGAAG+TGG | - | chr5.3:14273142-14273161 | MS.gene64908:CDS | 35.0% |
| !!! | CATCGTTTTTTCCCTTTAGA+AGG | + | chr5.3:14274378-14274397 | None:intergenic | 35.0% |
| !!! | TCGTTTTTTCCCTTTAGAAG+GGG | + | chr5.3:14274376-14274395 | None:intergenic | 35.0% |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.3:14273755-14273774 | None:intergenic | 40.0% | |
| AATGAGAAAGGAGGTCCATT+TGG | - | chr5.3:14274013-14274032 | MS.gene64908:CDS | 40.0% | |
| ACCAGAGTGTACTGAAACAA+TGG | + | chr5.3:14275249-14275268 | None:intergenic | 40.0% | |
| ACTGAAACAATGGATCCACT+GGG | + | chr5.3:14275239-14275258 | None:intergenic | 40.0% | |
| ACTGAGGCCTAATTTGAAAG+TGG | - | chr5.3:14273814-14273833 | MS.gene64908:CDS | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.3:14273818-14273837 | MS.gene64908:CDS | 40.0% | |
| ATGATGCTGATCAGTGTCAA+TGG | + | chr5.3:14275144-14275163 | None:intergenic | 40.0% | |
| ATGGCTCAGTTGTTTGATGT+AGG | - | chr5.3:14275505-14275524 | MS.gene64908:CDS | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.3:14274074-14274093 | MS.gene64908:CDS | 40.0% | |
| CTCGTATGCATCTTTCTCTA+TGG | - | chr5.3:14274066-14274085 | MS.gene64908:CDS | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.3:14273765-14273784 | MS.gene64908:intron | 40.0% | |
| GCACCAAACAAAGATCTTGA+TGG | - | chr5.3:14274337-14274356 | MS.gene64908:CDS | 40.0% | |
| GCCGTCAAATCTCAAATCAA+TGG | + | chr5.3:14273415-14273434 | None:intergenic | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.3:14274880-14274899 | None:intergenic | 40.0% | |
| GTGTCTTGGATAACACTGAA+TGG | + | chr5.3:14274953-14274972 | None:intergenic | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.3:14273761-14273780 | MS.gene64908:intron | 40.0% | |
| TACTGAAACAATGGATCCAC+TGG | + | chr5.3:14275240-14275259 | None:intergenic | 40.0% | |
| TCCATTGTTTCAGTACACTC+TGG | - | chr5.3:14275245-14275264 | MS.gene64908:intron | 40.0% | |
| TGAGGCTGTTGAGATTCTAA+AGG | - | chr5.3:14274315-14274334 | MS.gene64908:CDS | 40.0% | |
| ! | AGCTTGGTGGTATCTTCATA+TGG | - | chr5.3:14274242-14274261 | MS.gene64908:intron | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.3:14275174-14275193 | MS.gene64908:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+CGG | - | chr5.3:14274884-14274903 | MS.gene64908:intron | 40.0% |
| !! | TTGCTTCATTTCTAGCTTGG+TGG | - | chr5.3:14274229-14274248 | MS.gene64908:intron | 40.0% |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.3:14275110-14275129 | None:intergenic | 45.0% | |
| CTAACTGTTGCAATTGCTGG+TGG | + | chr5.3:14274775-14274794 | None:intergenic | 45.0% | |
| GAGGTTACCACCTAGCAAAA+GGG | + | chr5.3:14275091-14275110 | None:intergenic | 45.0% | |
| GCAGATACTCCCCTTCTAAA+GGG | - | chr5.3:14274364-14274383 | MS.gene64908:CDS | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.3:14273764-14273783 | MS.gene64908:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.3:14273196-14273215 | MS.gene64908:CDS | 45.0% | |
| TGAGGTTACCACCTAGCAAA+AGG | + | chr5.3:14275092-14275111 | None:intergenic | 45.0% | |
| TGCAGATACTCCCCTTCTAA+AGG | - | chr5.3:14274363-14274382 | MS.gene64908:CDS | 45.0% | |
| TGTGTCACACGTTTACTGTG+TGG | - | chr5.3:14273448-14273467 | MS.gene64908:intron | 45.0% | |
| ! | CATACGAGAGTGCATTACTG+TGG | + | chr5.3:14274054-14274073 | None:intergenic | 45.0% |
| ACCTAGCAAAAGGGTGATGC+AGG | + | chr5.3:14275082-14275101 | None:intergenic | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.3:14274031-14274050 | None:intergenic | 50.0% | |
| CCTAGCAAAAGGGTGATGCA+GGG | + | chr5.3:14275081-14275100 | None:intergenic | 50.0% | |
| TGACCAAGCAGTGAGAGCTA+TGG | + | chr5.3:14275578-14275597 | None:intergenic | 50.0% | |
| ! | TGCATCACCCTTTTGCTAGG+TGG | - | chr5.3:14275081-14275100 | MS.gene64908:intron | 50.0% |
| CAGCCATAGCTCTCACTGCT+TGG | - | chr5.3:14275572-14275591 | MS.gene64908:CDS | 55.0% | |
| CTAGGTGGTAACCTCACTGC+AGG | - | chr5.3:14275096-14275115 | MS.gene64908:intron | 55.0% | |
| GAGTTTCGGCATTCTCCCAG+TGG | - | chr5.3:14275221-14275240 | MS.gene64908:intron | 55.0% | |
| GTGAAAACCGCGGCGAGTTT+CGG | - | chr5.3:14275207-14275226 | MS.gene64908:intron | 55.0% | |
| TTTCGGTTTCCTCTTCGGCG+CGG | - | chr5.3:14274889-14274908 | MS.gene64908:intron | 55.0% | |
| ! | CCCTGCATCACCCTTTTGCT+AGG | - | chr5.3:14275078-14275097 | MS.gene64908:intron | 55.0% |
| GAGAATGCCGAAACTCGCCG+CGG | + | chr5.3:14275217-14275236 | None:intergenic | 60.0% | |
| TCGGCGCGGTTGCATGGTTA+AGG | - | chr5.3:14274903-14274922 | MS.gene64908:CDS | 60.0% | |
| ACCATGCAACCGCGCCGAAG+AGG | + | chr5.3:14274901-14274920 | None:intergenic | 65.0% | |
| TCCTCTTCGGCGCGGTTGCA+TGG | - | chr5.3:14274897-14274916 | MS.gene64908:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 14273137 | 14275627 | 14273137 | ID=MS.gene64908 |
| chr5.3 | mRNA | 14273137 | 14275627 | 14273137 | ID=MS.gene64908.t1;Parent=MS.gene64908 |
| chr5.3 | exon | 14275490 | 14275627 | 14275490 | ID=MS.gene64908.t1.exon1;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14275490 | 14275627 | 14275490 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14275144 | 14275223 | 14275144 | ID=MS.gene64908.t1.exon2;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14275144 | 14275223 | 14275144 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14274898 | 14275022 | 14274898 | ID=MS.gene64908.t1.exon3;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14274898 | 14275022 | 14274898 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14274674 | 14274795 | 14274674 | ID=MS.gene64908.t1.exon4;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14274674 | 14274795 | 14274674 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14274308 | 14274520 | 14274308 | ID=MS.gene64908.t1.exon5;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14274308 | 14274520 | 14274308 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14273975 | 14274094 | 14273975 | ID=MS.gene64908.t1.exon6;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14273975 | 14274094 | 14273975 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14273777 | 14273877 | 14273777 | ID=MS.gene64908.t1.exon7;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14273777 | 14273877 | 14273777 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14273461 | 14273699 | 14273461 | ID=MS.gene64908.t1.exon8;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14273461 | 14273699 | 14273461 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| chr5.3 | exon | 14273137 | 14273264 | 14273137 | ID=MS.gene64908.t1.exon9;Parent=MS.gene64908.t1 |
| chr5.3 | CDS | 14273137 | 14273264 | 14273137 | ID=cds.MS.gene64908.t1;Parent=MS.gene64908.t1 |
| Gene Sequence |
| Protein sequence |
