Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068943.t1 | RHN40643.1 | 92.1 | 695 | 55 | 0 | 1 | 695 | 1 | 695 | 2.10E-285 | 991.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068943.t1 | Q9SA32 | 52.4 | 424 | 168 | 3 | 315 | 738 | 6 | 395 | 6.5e-110 | 399.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068943.t1 | A0A396GJC6 | 92.1 | 695 | 55 | 0 | 1 | 695 | 1 | 695 | 1.5e-285 | 991.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049251 | MS.gene068943 | 0.803487 | 3.41E-49 | -1.69E-46 |
MS.gene049596 | MS.gene068943 | 0.815718 | 8.01E-52 | -1.69E-46 |
MS.gene050297 | MS.gene068943 | 0.828975 | 6.67E-55 | -1.69E-46 |
MS.gene05124 | MS.gene068943 | 0.845996 | 2.87E-59 | -1.69E-46 |
MS.gene051955 | MS.gene068943 | 0.82555 | 4.41E-54 | -1.69E-46 |
MS.gene052367 | MS.gene068943 | 0.828548 | 8.46E-55 | -1.69E-46 |
MS.gene053173 | MS.gene068943 | 0.801145 | 1.03E-48 | -1.69E-46 |
MS.gene053416 | MS.gene068943 | 0.814497 | 1.49E-51 | -1.69E-46 |
MS.gene053417 | MS.gene068943 | 0.812578 | 3.95E-51 | -1.69E-46 |
MS.gene054643 | MS.gene068943 | 0.825087 | 5.68E-54 | -1.69E-46 |
MS.gene055578 | MS.gene068943 | 0.819712 | 1.01E-52 | -1.69E-46 |
MS.gene056041 | MS.gene068943 | 0.825671 | 4.13E-54 | -1.69E-46 |
MS.gene05640 | MS.gene068943 | 0.817387 | 3.39E-52 | -1.69E-46 |
MS.gene056526 | MS.gene068943 | 0.804511 | 2.09E-49 | -1.69E-46 |
MS.gene058818 | MS.gene068943 | 0.806254 | 8.99E-50 | -1.69E-46 |
MS.gene058853 | MS.gene068943 | 0.808259 | 3.38E-50 | -1.69E-46 |
MS.gene059553 | MS.gene068943 | 0.814607 | 1.41E-51 | -1.69E-46 |
MS.gene060473 | MS.gene068943 | 0.81291 | 3.34E-51 | -1.69E-46 |
MS.gene060565 | MS.gene068943 | 0.804452 | 2.15E-49 | -1.69E-46 |
MS.gene06093 | MS.gene068943 | 0.812596 | 3.92E-51 | -1.69E-46 |
MS.gene061099 | MS.gene068943 | 0.818298 | 2.11E-52 | -1.69E-46 |
MS.gene061260 | MS.gene068943 | 0.855491 | 6.09E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene67725 | MS.gene068943 | PPI |
MS.gene00063 | MS.gene068943 | PPI |
MS.gene066552 | MS.gene068943 | PPI |
MS.gene78156 | MS.gene068943 | PPI |
MS.gene55900 | MS.gene068943 | PPI |
MS.gene67743 | MS.gene068943 | PPI |
MS.gene009372 | MS.gene068943 | PPI |
MS.gene28739 | MS.gene068943 | PPI |
MS.gene028366 | MS.gene068943 | PPI |
MS.gene071261 | MS.gene068943 | PPI |
MS.gene76034 | MS.gene068943 | PPI |
MS.gene36424 | MS.gene068943 | PPI |
MS.gene35086 | MS.gene068943 | PPI |
MS.gene066551 | MS.gene068943 | PPI |
MS.gene00146 | MS.gene068943 | PPI |
MS.gene51515 | MS.gene068943 | PPI |
MS.gene55980 | MS.gene068943 | PPI |
MS.gene67884 | MS.gene068943 | PPI |
MS.gene074258 | MS.gene068943 | PPI |
MS.gene058245 | MS.gene068943 | PPI |
MS.gene045765 | MS.gene068943 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068943.t1 | MTR_5g088980 | 39.941 | 338 | 187 | 7 | 406 | 737 | 90 | 417 | 5.28e-76 | 251 |
MS.gene068943.t1 | MTR_5g023790 | 46.014 | 276 | 143 | 2 | 464 | 733 | 144 | 419 | 2.54e-75 | 250 |
MS.gene068943.t1 | MTR_8g074000 | 45.211 | 261 | 140 | 1 | 476 | 733 | 163 | 423 | 4.96e-70 | 236 |
MS.gene068943.t1 | MTR_7g089080 | 44.444 | 270 | 139 | 3 | 476 | 737 | 189 | 455 | 3.01e-68 | 245 |
MS.gene068943.t1 | MTR_5g023790 | 47.679 | 237 | 118 | 2 | 464 | 694 | 144 | 380 | 7.66e-65 | 220 |
MS.gene068943.t1 | MTR_1g011470 | 38.824 | 255 | 149 | 3 | 486 | 733 | 161 | 415 | 1.35e-51 | 186 |
MS.gene068943.t1 | MTR_3g107970 | 38.521 | 257 | 151 | 3 | 484 | 733 | 211 | 467 | 1.02e-50 | 184 |
MS.gene068943.t1 | MTR_5g023790 | 47.778 | 180 | 86 | 1 | 476 | 647 | 162 | 341 | 2.78e-47 | 172 |
MS.gene068943.t1 | MTR_2g102520 | 40.909 | 220 | 123 | 3 | 483 | 695 | 212 | 431 | 1.93e-46 | 172 |
MS.gene068943.t1 | MTR_2g102550 | 34.444 | 270 | 169 | 4 | 470 | 731 | 150 | 419 | 1.12e-44 | 166 |
MS.gene068943.t1 | MTR_3g088415 | 35.484 | 248 | 151 | 4 | 490 | 729 | 244 | 490 | 1.25e-44 | 168 |
MS.gene068943.t1 | MTR_3g088405 | 35.317 | 252 | 148 | 5 | 490 | 729 | 247 | 495 | 3.62e-44 | 167 |
MS.gene068943.t1 | MTR_3g102510 | 33.333 | 252 | 159 | 4 | 486 | 729 | 74 | 324 | 2.10e-40 | 152 |
MS.gene068943.t1 | MTR_3g088415 | 38.947 | 190 | 110 | 2 | 490 | 673 | 244 | 433 | 4.21e-40 | 154 |
MS.gene068943.t1 | MTR_3g102520 | 32.946 | 258 | 160 | 5 | 483 | 729 | 88 | 343 | 2.44e-39 | 149 |
MS.gene068943.t1 | MTR_1g018680 | 32.411 | 253 | 162 | 4 | 486 | 729 | 91 | 343 | 1.25e-38 | 147 |
MS.gene068943.t1 | MTR_3g102530 | 30.597 | 268 | 159 | 4 | 487 | 729 | 71 | 336 | 1.27e-37 | 144 |
MS.gene068943.t1 | MTR_3g060400 | 36.992 | 246 | 142 | 7 | 484 | 721 | 26 | 266 | 2.91e-37 | 141 |
MS.gene068943.t1 | MTR_3g460990 | 36.992 | 246 | 142 | 7 | 484 | 721 | 26 | 266 | 2.91e-37 | 141 |
MS.gene068943.t1 | MTR_3g061680 | 35.317 | 252 | 150 | 6 | 478 | 721 | 14 | 260 | 8.69e-36 | 137 |
MS.gene068943.t1 | MTR_3g060770 | 35.931 | 231 | 137 | 4 | 479 | 702 | 25 | 251 | 3.08e-35 | 135 |
MS.gene068943.t1 | MTR_3g102540 | 33.740 | 246 | 154 | 5 | 498 | 738 | 23 | 264 | 3.78e-35 | 135 |
MS.gene068943.t1 | MTR_3g060820 | 34.553 | 246 | 148 | 6 | 484 | 721 | 20 | 260 | 4.12e-35 | 135 |
MS.gene068943.t1 | MTR_3g060410 | 38.679 | 212 | 121 | 6 | 518 | 721 | 135 | 345 | 9.86e-35 | 136 |
MS.gene068943.t1 | MTR_3g102560 | 30.662 | 287 | 186 | 3 | 454 | 738 | 45 | 320 | 1.69e-34 | 134 |
MS.gene068943.t1 | MTR_3g088415 | 41.259 | 143 | 83 | 1 | 490 | 631 | 244 | 386 | 1.68e-32 | 130 |
MS.gene068943.t1 | MTR_6g045270 | 34.646 | 254 | 147 | 9 | 485 | 731 | 45 | 286 | 2.69e-27 | 113 |
MS.gene068943.t1 | MTR_5g011900 | 27.094 | 203 | 141 | 3 | 453 | 651 | 40 | 239 | 1.51e-16 | 80.1 |
MS.gene068943.t1 | MTR_1g032850 | 29.730 | 185 | 126 | 4 | 519 | 700 | 372 | 555 | 1.59e-16 | 84.0 |
MS.gene068943.t1 | MTR_5g044040 | 38.667 | 75 | 46 | 0 | 540 | 614 | 7 | 81 | 2.20e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068943.t1 | AT1G16330 | 49.409 | 508 | 210 | 6 | 237 | 738 | 181 | 647 | 1.28e-154 | 464 |
MS.gene068943.t1 | AT5G06150 | 46.899 | 258 | 136 | 1 | 476 | 733 | 172 | 428 | 3.10e-80 | 263 |
MS.gene068943.t1 | AT3G11520 | 42.434 | 304 | 163 | 4 | 432 | 733 | 112 | 405 | 1.52e-75 | 250 |
MS.gene068943.t1 | AT1G20610 | 43.493 | 292 | 159 | 3 | 448 | 733 | 133 | 424 | 7.97e-74 | 246 |
MS.gene068943.t1 | AT1G76310 | 46.718 | 259 | 137 | 1 | 476 | 733 | 167 | 425 | 6.32e-72 | 241 |
MS.gene068943.t1 | AT2G26760 | 37.462 | 331 | 183 | 7 | 410 | 735 | 69 | 380 | 7.22e-67 | 226 |
MS.gene068943.t1 | AT1G76310 | 42.160 | 287 | 137 | 2 | 476 | 733 | 167 | 453 | 1.13e-65 | 225 |
MS.gene068943.t1 | AT1G76310 | 50.698 | 215 | 105 | 1 | 476 | 689 | 167 | 381 | 9.17e-64 | 218 |
MS.gene068943.t1 | AT3G11520 | 43.019 | 265 | 139 | 4 | 432 | 694 | 112 | 366 | 1.51e-63 | 217 |
MS.gene068943.t1 | AT4G37490 | 40.071 | 282 | 152 | 6 | 464 | 733 | 141 | 417 | 1.23e-62 | 216 |
MS.gene068943.t1 | AT2G17620 | 43.542 | 271 | 151 | 1 | 461 | 729 | 144 | 414 | 1.55e-59 | 207 |
MS.gene068943.t1 | AT4G35620 | 44.882 | 254 | 140 | 0 | 476 | 729 | 162 | 415 | 3.62e-58 | 204 |
MS.gene068943.t1 | AT5G11300 | 40.458 | 262 | 145 | 4 | 475 | 729 | 165 | 422 | 4.98e-54 | 192 |
MS.gene068943.t1 | AT4G35620 | 47.032 | 219 | 116 | 0 | 476 | 694 | 162 | 380 | 9.98e-51 | 182 |
MS.gene068943.t1 | AT5G43080 | 35.798 | 257 | 159 | 3 | 486 | 738 | 87 | 341 | 2.10e-49 | 177 |
MS.gene068943.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 171 | 431 | 8.52e-49 | 178 |
MS.gene068943.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 171 | 431 | 8.52e-49 | 178 |
MS.gene068943.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 177 | 437 | 1.18e-48 | 178 |
MS.gene068943.t1 | AT1G20590 | 49.412 | 170 | 86 | 0 | 544 | 713 | 63 | 232 | 5.54e-48 | 171 |
MS.gene068943.t1 | AT5G25380 | 40.909 | 220 | 123 | 3 | 484 | 696 | 171 | 390 | 7.91e-48 | 175 |
MS.gene068943.t1 | AT5G43080 | 35.878 | 262 | 157 | 5 | 486 | 738 | 87 | 346 | 8.91e-48 | 173 |
MS.gene068943.t1 | AT1G47220 | 36.742 | 264 | 154 | 5 | 486 | 738 | 56 | 317 | 5.62e-47 | 170 |
MS.gene068943.t1 | AT1G15570 | 34.559 | 272 | 168 | 4 | 476 | 737 | 178 | 449 | 1.15e-46 | 172 |
MS.gene068943.t1 | AT1G76310 | 49.143 | 175 | 86 | 2 | 476 | 649 | 167 | 339 | 2.77e-46 | 168 |
MS.gene068943.t1 | AT1G44110 | 37.652 | 247 | 147 | 3 | 490 | 729 | 198 | 444 | 3.80e-46 | 171 |
MS.gene068943.t1 | AT5G06150 | 46.429 | 168 | 87 | 2 | 476 | 643 | 172 | 336 | 4.62e-46 | 167 |
MS.gene068943.t1 | AT5G11300 | 43.662 | 213 | 109 | 4 | 475 | 680 | 165 | 373 | 6.49e-46 | 169 |
MS.gene068943.t1 | AT1G80370 | 38.326 | 227 | 133 | 3 | 476 | 695 | 187 | 413 | 3.26e-45 | 169 |
MS.gene068943.t1 | AT1G47210 | 34.848 | 264 | 159 | 5 | 486 | 738 | 102 | 363 | 2.22e-44 | 164 |
MS.gene068943.t1 | AT1G47230 | 31.270 | 307 | 189 | 5 | 441 | 738 | 63 | 356 | 1.18e-43 | 162 |
MS.gene068943.t1 | AT1G47230 | 31.169 | 308 | 189 | 6 | 441 | 738 | 63 | 357 | 5.78e-42 | 157 |
MS.gene068943.t1 | AT1G77390 | 34.940 | 249 | 151 | 4 | 490 | 729 | 182 | 428 | 2.08e-40 | 154 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 259 | 401 | 4.04e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 259 | 401 | 4.04e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 4.12e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 4.62e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 4.62e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 4.62e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 4.62e-27 | 116 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 248 | 390 | 4.86e-27 | 115 |
MS.gene068943.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 6.78e-27 | 115 |
MS.gene068943.t1 | AT1G47210 | 42.857 | 91 | 49 | 2 | 486 | 573 | 102 | 192 | 7.53e-17 | 80.1 |
MS.gene068943.t1 | AT1G14750 | 28.947 | 190 | 132 | 2 | 512 | 698 | 380 | 569 | 7.81e-17 | 85.1 |
MS.gene068943.t1 | AT1G14750 | 28.497 | 193 | 135 | 2 | 512 | 701 | 380 | 572 | 9.70e-17 | 84.7 |
MS.gene068943.t1 | AT1G14750 | 28.947 | 190 | 132 | 2 | 512 | 698 | 212 | 401 | 1.36e-15 | 80.1 |
MS.gene068943.t1 | AT1G14750 | 28.947 | 190 | 131 | 3 | 512 | 698 | 212 | 400 | 7.84e-15 | 77.8 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAGGTTCTTACTTAATTT+TGG | 0.126058 | 8.1:+58325290 | None:intergenic |
CTCTGCCAGTTACAGGTTTA+AGG | 0.127014 | 8.1:-58323467 | MS.gene068943:CDS |
AATTAGTAGGCACAGGTTTA+AGG | 0.156384 | 8.1:-58323822 | MS.gene068943:intron |
ATCTTATACAACTTCATTAA+TGG | 0.209874 | 8.1:-58321115 | MS.gene068943:CDS |
ATGCTATATATCAGTACTAT+TGG | 0.246809 | 8.1:-58320912 | MS.gene068943:CDS |
AGGAAGTCTCTGCCAGTTAC+AGG | 0.257709 | 8.1:-58323474 | MS.gene068943:CDS |
AACCCCACCGAGCTCCTTTC+TGG | 0.273368 | 8.1:+58318528 | None:intergenic |
CACTCTTAACTTTCCCTTCC+CGG | 0.274097 | 8.1:+58318567 | None:intergenic |
TTGCAGATTCTCAAGGAAAA+TGG | 0.281849 | 8.1:-58321009 | MS.gene068943:intron |
CCTCAAAGTATGAGGACTTT+TGG | 0.284590 | 8.1:-58319768 | MS.gene068943:CDS |
AACTAGTACAATTGCCTCTA+AGG | 0.304795 | 8.1:-58321388 | MS.gene068943:CDS |
AACAAAACATGTGGAGCTTC+TGG | 0.315400 | 8.1:-58325485 | MS.gene068943:intron |
AACTTGAATCCGGTCAATTT+CGG | 0.318319 | 8.1:+58326521 | None:intergenic |
TCAAGGAAAATGGTGAAGTT+AGG | 0.319988 | 8.1:-58320999 | MS.gene068943:CDS |
TGATTTGTTCTGGCCTGATA+TGG | 0.332477 | 8.1:+58321416 | None:intergenic |
CAGTTCCAAGGAGGGTAAAC+AGG | 0.338773 | 8.1:-58323114 | MS.gene068943:CDS |
TTCCCTTCCCGGCAGCTTTG+TGG | 0.339747 | 8.1:+58318578 | None:intergenic |
CTAAAATCTAAATCCATATC+AGG | 0.341068 | 8.1:-58321429 | MS.gene068943:CDS |
TGCTCCTTGCATTAATTAGT+TGG | 0.354273 | 8.1:+58322719 | None:intergenic |
CTTTGGATTAGCGGCAGTAT+TGG | 0.366466 | 8.1:+58325675 | None:intergenic |
TGCTATATATCAGTACTATT+GGG | 0.372911 | 8.1:-58320911 | MS.gene068943:CDS |
TCACAAAACCTTGTAGTTGT+AGG | 0.374254 | 8.1:+58323588 | None:intergenic |
TTAATGCAAGGAGCAATCTA+TGG | 0.378840 | 8.1:-58322711 | MS.gene068943:CDS |
ATTAGTAGGCACAGGTTTAA+GGG | 0.382551 | 8.1:-58323821 | MS.gene068943:intron |
ATGTCTTTGACTTGCATCAT+TGG | 0.383091 | 8.1:+58321314 | None:intergenic |
TCTGCCAGTTACAGGTTTAA+GGG | 0.386828 | 8.1:-58323466 | MS.gene068943:CDS |
CTGTTTACCCTCCTTGGAAC+TGG | 0.389619 | 8.1:+58323115 | None:intergenic |
TACCTATCCTTTGTGCCAAC+TGG | 0.389906 | 8.1:+58323754 | None:intergenic |
GAAGCCCTTAAACCTGTAAC+TGG | 0.401913 | 8.1:+58323462 | None:intergenic |
ACAGGTTTAAGGGCTTCTTT+AGG | 0.403015 | 8.1:-58323456 | MS.gene068943:CDS |
CCAGTACAAGTCAAATCAAC+GGG | 0.403924 | 8.1:+58318477 | None:intergenic |
TCTACCCTGTTTACCCTCCT+TGG | 0.405631 | 8.1:+58323109 | None:intergenic |
GCCTCTGAATCGCGTCCAAC+TGG | 0.413116 | 8.1:-58326684 | MS.gene068943:intron |
AACCCCTTTGTTAGCAGCTA+TGG | 0.419315 | 8.1:+58325702 | None:intergenic |
TGCGGGGAGTATTGGTCAAC+TGG | 0.421771 | 8.1:-58320117 | MS.gene068943:CDS |
GCTCCTTGCATTAATTAGTT+GGG | 0.422245 | 8.1:+58322720 | None:intergenic |
CCCTTTGAAGAAATCCTTCA+CGG | 0.425297 | 8.1:-58325006 | MS.gene068943:intron |
CTTGTAGTTGTGGGTAACAT+AGG | 0.426816 | 8.1:+58323242 | None:intergenic |
TTAGAGGCAATTGTACTAGT+TGG | 0.428782 | 8.1:+58321390 | None:intergenic |
GGCTCGAGTTGAGCCCAATC+TGG | 0.429781 | 8.1:+58326704 | None:intergenic |
ATGTTTCTTCCAGCACTTCA+AGG | 0.433166 | 8.1:-58323494 | MS.gene068943:intron |
TCCTCATATGCGGGGAGTAT+TGG | 0.436208 | 8.1:-58320125 | MS.gene068943:CDS |
TTGATTGTGGTCTTAACAAC+AGG | 0.438316 | 8.1:+58321474 | None:intergenic |
CCAAAAGTCCTCATACTTTG+AGG | 0.440603 | 8.1:+58319768 | None:intergenic |
CTTGTAGTTGTAGGTAACAT+AGG | 0.444522 | 8.1:+58323597 | None:intergenic |
AGGACTTCTGCAAGAGAAGT+TGG | 0.449064 | 8.1:-58326407 | MS.gene068943:CDS |
GGGAAATAAGTCACCTCCAT+TGG | 0.449283 | 8.1:+58323903 | None:intergenic |
CTGACTTTCTTGAGGAGACT+TGG | 0.449935 | 8.1:+58321858 | None:intergenic |
CGGAAGAATAGTTCATCAAA+TGG | 0.450007 | 8.1:-58323784 | MS.gene068943:CDS |
TGTCTGTTCCAAGCACTTCA+AGG | 0.453793 | 8.1:-58323147 | MS.gene068943:intron |
CAAGGAAAATGGTGAAGTTA+GGG | 0.456754 | 8.1:-58320998 | MS.gene068943:CDS |
TGCCTTACCAGGGTTTCAGC+AGG | 0.457395 | 8.1:-58325053 | MS.gene068943:intron |
TTCGCAAACCTTGTAGTTGT+GGG | 0.457458 | 8.1:+58323233 | None:intergenic |
TGAAGTAGTGGTGTCCATGA+TGG | 0.459792 | 8.1:+58318738 | None:intergenic |
AAATGGTGAAGTTAGGGAGC+AGG | 0.462821 | 8.1:-58320992 | MS.gene068943:CDS |
GTTTCAGGTAAAATCCAGAT+TGG | 0.463789 | 8.1:-58326718 | MS.gene068943:intron |
ATATCTGACAGTGACATTGT+TGG | 0.470336 | 8.1:-58319863 | MS.gene068943:CDS |
GAAGTAGTGGTGTCCATGAT+GGG | 0.471578 | 8.1:+58318739 | None:intergenic |
TGTATAAGATTTCCGACGGC+TGG | 0.471671 | 8.1:+58321128 | None:intergenic |
GAGAAGTTGGCGCAGCTTCA+AGG | 0.471958 | 8.1:-58326394 | MS.gene068943:intron |
GATCAGAAGAATAATTCAAA+TGG | 0.472744 | 8.1:-58323432 | MS.gene068943:CDS |
GTTATGAAGTTTCACAGATC+AGG | 0.476147 | 8.1:-58318704 | MS.gene068943:intron |
ATGCCATAGCTGCTAACAAA+GGG | 0.476196 | 8.1:-58325705 | MS.gene068943:CDS |
ACAGGTTTAAGGGTTTCCTT+AGG | 0.478290 | 8.1:-58323811 | MS.gene068943:intron |
TGGAAGACCACTTTGGCCAC+TGG | 0.483759 | 8.1:+58322866 | None:intergenic |
TATACAAGAGATCAAATGCT+TGG | 0.491502 | 8.1:-58319611 | MS.gene068943:CDS |
CATACTTTGAGGCCAACAAA+AGG | 0.492005 | 8.1:+58319779 | None:intergenic |
AGGAAATATGAAAGCGAGAA+AGG | 0.495289 | 8.1:-58325373 | MS.gene068943:CDS |
TTTCAGGTAAAATCCAGATT+GGG | 0.496626 | 8.1:-58326717 | MS.gene068943:intron |
TGTTGTTAAGACCACAATCA+AGG | 0.496768 | 8.1:-58321472 | MS.gene068943:CDS |
CTATGTTACCCACAACTACA+AGG | 0.496963 | 8.1:-58323241 | MS.gene068943:intron |
TTACATTCATCGTCTATACT+TGG | 0.497518 | 8.1:+58320961 | None:intergenic |
CACTGTCAGATATAGTGTCT+CGG | 0.498442 | 8.1:+58319873 | None:intergenic |
TTTGTTGGCCTCAAAGTATG+AGG | 0.498991 | 8.1:-58319776 | MS.gene068943:CDS |
ACCCATCACCAACTTGAATC+CGG | 0.499561 | 8.1:+58326511 | None:intergenic |
GACCGGATTCAAGTTGGTGA+TGG | 0.501396 | 8.1:-58326513 | MS.gene068943:CDS |
GGCTGCACAATCAGATATGA+AGG | 0.502649 | 8.1:-58319026 | MS.gene068943:intron |
ATTCGCAAACCTTGTAGTTG+TGG | 0.508216 | 8.1:+58323232 | None:intergenic |
ACCGTGAAGGATTTCTTCAA+AGG | 0.511348 | 8.1:+58325005 | None:intergenic |
GTATATTACCTTTGGATTAG+CGG | 0.512604 | 8.1:+58325666 | None:intergenic |
ATGACAACTGAATTATTCTC+AGG | 0.516778 | 8.1:+58321240 | None:intergenic |
TGGGGAGAGCAGTTTGAAAA+CGG | 0.518960 | 8.1:-58321181 | MS.gene068943:CDS |
CTGACATTCCACAAAGCTGC+CGG | 0.520839 | 8.1:-58318586 | MS.gene068943:CDS |
ACTGTCAGATATAGTGTCTC+GGG | 0.522142 | 8.1:+58319874 | None:intergenic |
ACCGGATTCAAGTTGGTGAT+GGG | 0.523190 | 8.1:-58326512 | MS.gene068943:CDS |
CCTTAATTTGCAGATTCTCA+AGG | 0.524626 | 8.1:-58321016 | MS.gene068943:intron |
CTATGTTACCTACAACTACA+AGG | 0.525004 | 8.1:-58323596 | MS.gene068943:intron |
CCGTGAAGGATTTCTTCAAA+GGG | 0.526742 | 8.1:+58325006 | None:intergenic |
TCTCAAGTACCTATCCTTTG+TGG | 0.526837 | 8.1:+58323395 | None:intergenic |
TATGAAAGCGAGAAAGGCAT+TGG | 0.528115 | 8.1:-58325367 | MS.gene068943:CDS |
ACCAATACTCCCCGCATATG+AGG | 0.531007 | 8.1:+58320124 | None:intergenic |
TTCCACAAAGCTGCCGGGAA+GGG | 0.533566 | 8.1:-58318580 | MS.gene068943:CDS |
ATCCTCAATGGTTACTCTCA+AGG | 0.534260 | 8.1:-58326857 | None:intergenic |
AGAGATTACTCCTCATATGC+GGG | 0.536325 | 8.1:-58320134 | MS.gene068943:CDS |
TACAATTGCCTCTAAGGATG+AGG | 0.537132 | 8.1:-58321382 | MS.gene068943:CDS |
ATTCCAGAAAGGAGCTCGGT+GGG | 0.541278 | 8.1:-58318531 | MS.gene068943:CDS |
ATTCCACAAAGCTGCCGGGA+AGG | 0.541871 | 8.1:-58318581 | MS.gene068943:CDS |
TCTTACTTGGAAGACCACTT+TGG | 0.541955 | 8.1:+58322859 | None:intergenic |
TAAGGGTTTCCTTAGGTGAT+CGG | 0.541985 | 8.1:-58323804 | MS.gene068943:CDS |
TGTAGAGCTTCCTTGAGCAT+TGG | 0.542467 | 8.1:+58325335 | None:intergenic |
CAATTAGATGCTTCCAATGG+AGG | 0.543103 | 8.1:-58323916 | MS.gene068943:intron |
TACCTTGACTGACTTTCTTG+AGG | 0.544981 | 8.1:+58321850 | None:intergenic |
ACGAGTGAGATGCAGTTAGT+TGG | 0.548556 | 8.1:-58319811 | MS.gene068943:CDS |
AAAGACATCAACCATCTGAT+GGG | 0.554208 | 8.1:-58321299 | MS.gene068943:CDS |
CAAAGACATCGACCATCTGA+TGG | 0.555227 | 8.1:-58321201 | MS.gene068943:CDS |
ATACTTTGAGGCCAACAAAA+GGG | 0.555362 | 8.1:+58319780 | None:intergenic |
CACTGCAAATAACCCCATCA+TGG | 0.557574 | 8.1:-58318752 | MS.gene068943:CDS |
ATTCATCGTCTATACTTGGT+AGG | 0.558688 | 8.1:+58320965 | None:intergenic |
ACTATTCTTCCGATCACCTA+AGG | 0.561914 | 8.1:+58323795 | None:intergenic |
AAAGACATCGACCATCTGAT+GGG | 0.563380 | 8.1:-58321200 | MS.gene068943:CDS |
GAAATTGACCGGATTCAAGT+TGG | 0.565766 | 8.1:-58326519 | MS.gene068943:CDS |
ATTGGTCAACTGGCTAATTG+AGG | 0.566050 | 8.1:-58320107 | MS.gene068943:intron |
ATACTGCACTCCCCATCAGA+TGG | 0.569624 | 8.1:+58321288 | None:intergenic |
GTTCAATTAGATGCTTCCAA+TGG | 0.571665 | 8.1:-58323919 | MS.gene068943:CDS |
CAAAGACATCAACCATCTGA+TGG | 0.574777 | 8.1:-58321300 | MS.gene068943:CDS |
AAGAGATCAAATGCTTGGAA+TGG | 0.575226 | 8.1:-58319606 | MS.gene068943:intron |
GTTCCCAACTAATTAATGCA+AGG | 0.576421 | 8.1:-58322723 | MS.gene068943:CDS |
ACCAGTTGGACGCGATTCAG+AGG | 0.576483 | 8.1:+58326683 | None:intergenic |
TGACATTCCACAAAGCTGCC+GGG | 0.576603 | 8.1:-58318585 | MS.gene068943:CDS |
AATCAGTTGCCACAAAGGAT+AGG | 0.580793 | 8.1:-58323404 | MS.gene068943:intron |
CAATACTGCCGCTAATCCAA+AGG | 0.583084 | 8.1:-58325674 | MS.gene068943:intron |
AAACTGCTCTCCCCATCAGA+TGG | 0.584983 | 8.1:+58321189 | None:intergenic |
GGAAGTCTCTGCCAGTTCCA+AGG | 0.587112 | 8.1:-58323126 | MS.gene068943:CDS |
TACTTCCAATCGCAGGCACA+TGG | 0.589068 | 8.1:-58320190 | MS.gene068943:intron |
GAAGGGTGATTTCAAAAGCA+TGG | 0.592171 | 8.1:-58325516 | MS.gene068943:intron |
CAGAAGAATAATTCAAATGG+AGG | 0.592330 | 8.1:-58323429 | MS.gene068943:CDS |
CTTCATATTCAACTAAGCAT+AGG | 0.594043 | 8.1:+58318832 | None:intergenic |
GTCTCTGCCAGTTCCAAGGA+GGG | 0.594149 | 8.1:-58323122 | MS.gene068943:CDS |
TCTTTCTGATAACAGTTCAG+TGG | 0.602262 | 8.1:-58321343 | MS.gene068943:CDS |
GAGAAAAGTAACAAAACATG+TGG | 0.602918 | 8.1:-58325494 | MS.gene068943:CDS |
AGGTTCAACCACTAAAACAG+TGG | 0.606699 | 8.1:-58325033 | MS.gene068943:CDS |
TTGATCTCTTGTATACGACT+CGG | 0.606835 | 8.1:+58319619 | None:intergenic |
GCTGATGTTACCAATGCTCA+AGG | 0.609500 | 8.1:-58325345 | MS.gene068943:CDS |
GCTGATGCGCATAGTAGTGA+AGG | 0.610271 | 8.1:+58318795 | None:intergenic |
CTCCTCAAGAAAGTCAGTCA+AGG | 0.612330 | 8.1:-58321852 | MS.gene068943:intron |
AACCAGTTGGCACAAAGGAT+AGG | 0.612355 | 8.1:-58323756 | MS.gene068943:intron |
TTATATGAAGCAGTGGGTGG+TGG | 0.612502 | 8.1:-58326564 | MS.gene068943:intron |
TGGAAGACTCGAGTTAGTGA+TGG | 0.613219 | 8.1:-58322691 | MS.gene068943:CDS |
AGGTCAATCAGTTGCCACAA+AGG | 0.614915 | 8.1:-58323409 | MS.gene068943:CDS |
TCAAATGGAGGTCAACCAGT+TGG | 0.620772 | 8.1:-58323769 | MS.gene068943:CDS |
CAGAGATTACTCCTCATATG+CGG | 0.620861 | 8.1:-58320135 | MS.gene068943:CDS |
AAGTTGTATAAGATTTCCGA+CGG | 0.622303 | 8.1:+58321124 | None:intergenic |
AGTTCCAAGGAGGGTAAACA+GGG | 0.627018 | 8.1:-58323113 | MS.gene068943:CDS |
AGGTCAACCAGTTGGCACAA+AGG | 0.627713 | 8.1:-58323761 | MS.gene068943:CDS |
GAAACAGCCAGTGGCCAAAG+TGG | 0.629869 | 8.1:-58322873 | MS.gene068943:CDS |
GGTTGCAGCAGTGAAACCGT+TGG | 0.635674 | 8.1:-58318509 | MS.gene068943:CDS |
AAGGAGTGGGAGCATTAAGA+CGG | 0.642469 | 8.1:+58319074 | None:intergenic |
AAATATTCCAGAAAGGAGCT+CGG | 0.647083 | 8.1:-58318535 | MS.gene068943:CDS |
AAGAATAGTTCATCAAATGG+AGG | 0.648198 | 8.1:-58323781 | MS.gene068943:CDS |
GGTTCAACCACTAAAACAGT+GGG | 0.650460 | 8.1:-58325032 | MS.gene068943:CDS |
AGATGTAGAAGCCTTGATTG+TGG | 0.654920 | 8.1:+58321461 | None:intergenic |
TATTCCAGAAAGGAGCTCGG+TGG | 0.657683 | 8.1:-58318532 | MS.gene068943:CDS |
TGTGACTTTCCATACCGTGA+AGG | 0.662185 | 8.1:+58324992 | None:intergenic |
TTCCAGAAAGGAGCTCGGTG+GGG | 0.665780 | 8.1:-58318530 | MS.gene068943:CDS |
AAGTAGTGGTGTCCATGATG+GGG | 0.666437 | 8.1:+58318740 | None:intergenic |
AATGCCATAGCTGCTAACAA+AGG | 0.669514 | 8.1:-58325706 | MS.gene068943:CDS |
AAGACATCAACCATCTGATG+GGG | 0.669550 | 8.1:-58321298 | MS.gene068943:CDS |
CGGGAAGGGAAAGTTAAGAG+TGG | 0.674640 | 8.1:-58318566 | MS.gene068943:CDS |
TCAGTACTATTGGGTTACTG+AGG | 0.675513 | 8.1:-58320902 | MS.gene068943:intron |
AGTCTCTGCCAGTTCCAAGG+AGG | 0.676674 | 8.1:-58323123 | MS.gene068943:CDS |
CAACGGGGAAGTCTATCCAA+CGG | 0.683350 | 8.1:+58318493 | None:intergenic |
AAGACATCGACCATCTGATG+GGG | 0.684383 | 8.1:-58321199 | MS.gene068943:CDS |
GAGATTACTCCTCATATGCG+GGG | 0.688505 | 8.1:-58320133 | MS.gene068943:CDS |
GGTAGAGATGAATAACACAA+AGG | 0.692382 | 8.1:-58323092 | MS.gene068943:intron |
GGAAGTTCTGAAACAGCCAG+TGG | 0.695203 | 8.1:-58322882 | MS.gene068943:CDS |
TGCCATAGCTGCTAACAAAG+GGG | 0.708331 | 8.1:-58325704 | MS.gene068943:CDS |
TCAAGGCTTCTACATCTCAG+AGG | 0.717453 | 8.1:-58321455 | MS.gene068943:CDS |
CAGTACAAGTCAAATCAACG+GGG | 0.772830 | 8.1:+58318478 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 58318492 | 58326872 | 58318492 | ID=MS.gene068943 |
chr8.1 | mRNA | 58318492 | 58326872 | 58318492 | ID=MS.gene068943.t1;Parent=MS.gene068943 |
chr8.1 | exon | 58326858 | 58326872 | 58326858 | ID=MS.gene068943.t1.exon1;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58326858 | 58326872 | 58326858 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58326685 | 58326733 | 58326685 | ID=MS.gene068943.t1.exon2;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58326685 | 58326733 | 58326685 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58326504 | 58326573 | 58326504 | ID=MS.gene068943.t1.exon3;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58326504 | 58326573 | 58326504 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58326395 | 58326427 | 58326395 | ID=MS.gene068943.t1.exon4;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58326395 | 58326427 | 58326395 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58325675 | 58325732 | 58325675 | ID=MS.gene068943.t1.exon5;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58325675 | 58325732 | 58325675 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58325486 | 58325534 | 58325486 | ID=MS.gene068943.t1.exon6;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58325486 | 58325534 | 58325486 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58325303 | 58325393 | 58325303 | ID=MS.gene068943.t1.exon7;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58325303 | 58325393 | 58325303 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58325007 | 58325064 | 58325007 | ID=MS.gene068943.t1.exon8;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58325007 | 58325064 | 58325007 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323917 | 58323974 | 58323917 | ID=MS.gene068943.t1.exon9;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323917 | 58323974 | 58323917 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323757 | 58323829 | 58323757 | ID=MS.gene068943.t1.exon10;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323757 | 58323829 | 58323757 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323597 | 58323632 | 58323597 | ID=MS.gene068943.t1.exon11;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323597 | 58323632 | 58323597 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323405 | 58323503 | 58323405 | ID=MS.gene068943.t1.exon12;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323405 | 58323503 | 58323405 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323242 | 58323277 | 58323242 | ID=MS.gene068943.t1.exon13;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323242 | 58323277 | 58323242 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58323093 | 58323156 | 58323093 | ID=MS.gene068943.t1.exon14;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58323093 | 58323156 | 58323093 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58322865 | 58322913 | 58322865 | ID=MS.gene068943.t1.exon15;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58322865 | 58322913 | 58322865 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58322679 | 58322772 | 58322679 | ID=MS.gene068943.t1.exon16;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58322679 | 58322772 | 58322679 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58321853 | 58321898 | 58321853 | ID=MS.gene068943.t1.exon17;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58321853 | 58321898 | 58321853 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58321104 | 58321496 | 58321104 | ID=MS.gene068943.t1.exon18;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58321104 | 58321496 | 58321104 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58320903 | 58321025 | 58320903 | ID=MS.gene068943.t1.exon19;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58320903 | 58321025 | 58320903 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58320108 | 58320197 | 58320108 | ID=MS.gene068943.t1.exon20;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58320108 | 58320197 | 58320108 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58319759 | 58319920 | 58319759 | ID=MS.gene068943.t1.exon21;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58319759 | 58319920 | 58319759 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58319607 | 58319666 | 58319607 | ID=MS.gene068943.t1.exon22;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58319607 | 58319666 | 58319607 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58319027 | 58319125 | 58319027 | ID=MS.gene068943.t1.exon23;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58319027 | 58319125 | 58319027 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58318705 | 58318883 | 58318705 | ID=MS.gene068943.t1.exon24;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58318705 | 58318883 | 58318705 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
chr8.1 | exon | 58318492 | 58318627 | 58318492 | ID=MS.gene068943.t1.exon25;Parent=MS.gene068943.t1 |
chr8.1 | CDS | 58318492 | 58318627 | 58318492 | ID=cds.MS.gene068943.t1;Parent=MS.gene068943.t1 |
Gene Sequence |
Protein sequence |