Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05866.t1 | XP_003630712.1 | 96.5 | 374 | 13 | 0 | 1 | 374 | 1 | 374 | 3.50E-188 | 667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05866.t1 | Q9SD22 | 34.4 | 410 | 199 | 7 | 21 | 373 | 61 | 457 | 2.7e-48 | 194.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05866.t1 | G7L7F5 | 96.5 | 374 | 13 | 0 | 1 | 374 | 1 | 374 | 2.5e-188 | 667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049133 | MS.gene05866 | 0.812816 | 3.50E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene05866 | 0.810962 | 8.88E-51 | -1.69E-46 |
| MS.gene05866 | MS.gene064162 | 0.8052 | 1.50E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene064517 | 0.804952 | 1.69E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene064716 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene05866 | MS.gene06550 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene05866 | MS.gene065643 | 0.821075 | 4.90E-53 | -1.69E-46 |
| MS.gene05866 | MS.gene06793 | 0.834904 | 2.29E-56 | -1.69E-46 |
| MS.gene05866 | MS.gene07138 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene071428 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene07246 | 0.812934 | 3.30E-51 | -1.69E-46 |
| MS.gene05866 | MS.gene07618 | 0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene07620 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene07622 | 0.807576 | 4.72E-50 | -1.69E-46 |
| MS.gene05866 | MS.gene08366 | 0.800374 | 1.48E-48 | -1.69E-46 |
| MS.gene05866 | MS.gene20768 | 0.806136 | 9.52E-50 | -1.69E-46 |
| MS.gene05866 | MS.gene23003 | 0.804879 | 1.75E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene24224 | 0.821527 | 3.85E-53 | -1.69E-46 |
| MS.gene05866 | MS.gene26665 | 0.828847 | 7.16E-55 | -1.69E-46 |
| MS.gene05866 | MS.gene27011 | 0.829238 | 5.76E-55 | -1.69E-46 |
| MS.gene05866 | MS.gene27274 | 0.827934 | 1.19E-54 | -1.69E-46 |
| MS.gene05866 | MS.gene44375 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene05866 | MS.gene47439 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene05866 | MS.gene53481 | 0.80656 | 7.75E-50 | -1.69E-46 |
| MS.gene05866 | MS.gene77734 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene05866 | MS.gene78065 | 0.817038 | 4.06E-52 | -1.69E-46 |
| MS.gene05866 | MS.gene90732 | 0.841228 | 5.40E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05866.t1 | MTR_8g102510 | 97.326 | 374 | 10 | 0 | 1 | 374 | 1 | 374 | 0.0 | 741 |
| MS.gene05866.t1 | MTR_8g102510 | 96.885 | 321 | 10 | 0 | 1 | 321 | 1 | 321 | 0.0 | 634 |
| MS.gene05866.t1 | MTR_8g102510 | 96.259 | 294 | 11 | 0 | 1 | 294 | 1 | 294 | 0.0 | 579 |
| MS.gene05866.t1 | MTR_6g088680 | 71.543 | 376 | 98 | 6 | 1 | 372 | 1 | 371 | 0.0 | 548 |
| MS.gene05866.t1 | MTR_6g088680 | 69.128 | 298 | 85 | 5 | 1 | 294 | 1 | 295 | 6.58e-148 | 420 |
| MS.gene05866.t1 | MTR_4g073530 | 36.812 | 345 | 182 | 8 | 35 | 358 | 54 | 383 | 6.28e-67 | 217 |
| MS.gene05866.t1 | MTR_5g022450 | 33.854 | 384 | 187 | 6 | 28 | 358 | 62 | 431 | 1.57e-64 | 213 |
| MS.gene05866.t1 | MTR_8g075350 | 32.326 | 430 | 195 | 7 | 8 | 359 | 42 | 453 | 1.19e-63 | 211 |
| MS.gene05866.t1 | MTR_6g088685 | 48.018 | 227 | 97 | 5 | 19 | 242 | 9 | 217 | 1.26e-62 | 200 |
| MS.gene05866.t1 | MTR_5g022450 | 32.812 | 384 | 185 | 7 | 28 | 358 | 62 | 425 | 6.38e-59 | 197 |
| MS.gene05866.t1 | MTR_4g073530 | 34.416 | 308 | 166 | 8 | 35 | 321 | 57 | 349 | 2.39e-50 | 172 |
| MS.gene05866.t1 | MTR_8g466670 | 91.071 | 56 | 5 | 0 | 48 | 103 | 37 | 92 | 3.53e-28 | 109 |
| MS.gene05866.t1 | MTR_8g096220 | 90.385 | 52 | 5 | 0 | 48 | 99 | 5 | 56 | 6.53e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05866.t1 | AT4G15450 | 58.726 | 361 | 125 | 5 | 27 | 370 | 27 | 380 | 1.05e-149 | 428 |
| MS.gene05866.t1 | AT4G15450 | 57.341 | 361 | 124 | 6 | 27 | 370 | 27 | 374 | 2.79e-143 | 411 |
| MS.gene05866.t1 | AT3G21600 | 59.599 | 349 | 129 | 5 | 30 | 370 | 29 | 373 | 4.14e-140 | 403 |
| MS.gene05866.t1 | AT3G21600 | 60.486 | 329 | 118 | 5 | 30 | 350 | 29 | 353 | 4.92e-133 | 385 |
| MS.gene05866.t1 | AT3G21600 | 53.241 | 216 | 89 | 5 | 30 | 237 | 29 | 240 | 1.44e-74 | 232 |
| MS.gene05866.t1 | AT4G35985 | 34.988 | 403 | 202 | 8 | 18 | 373 | 52 | 441 | 1.46e-69 | 225 |
| MS.gene05866.t1 | AT3G51250 | 33.938 | 386 | 185 | 7 | 28 | 356 | 68 | 440 | 5.31e-68 | 221 |
| MS.gene05866.t1 | AT2G17840 | 34.491 | 403 | 182 | 12 | 13 | 358 | 54 | 431 | 7.00e-60 | 200 |
| MS.gene05866.t1 | AT4G35985 | 33.237 | 346 | 176 | 7 | 18 | 321 | 52 | 384 | 1.11e-52 | 179 |
| MS.gene05866.t1 | AT3G51250 | 31.481 | 324 | 152 | 7 | 28 | 294 | 68 | 378 | 1.58e-46 | 163 |
| MS.gene05866.t1 | AT2G17840 | 32.240 | 366 | 166 | 12 | 13 | 321 | 54 | 394 | 7.76e-45 | 159 |
| MS.gene05866.t1 | AT4G35985 | 32.301 | 226 | 111 | 5 | 18 | 201 | 52 | 277 | 2.28e-30 | 119 |
| MS.gene05866.t1 | AT3G21590 | 46.405 | 153 | 79 | 1 | 169 | 321 | 69 | 218 | 4.06e-28 | 110 |
| MS.gene05866.t1 | AT3G21590 | 43.411 | 129 | 70 | 1 | 169 | 297 | 69 | 194 | 5.16e-19 | 84.7 |
| MS.gene05866.t1 | AT3G21590 | 43.307 | 127 | 69 | 1 | 169 | 295 | 69 | 192 | 3.31e-18 | 82.8 |
Find 83 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATCTGCATGACTATTT+AGG | 0.176109 | 4.4:+3495398 | None:intergenic |
| ACAGGCTCATCTTTAGTTAA+AGG | 0.239941 | 4.4:+3496009 | None:intergenic |
| AACTTCTTGCCTAAGGTTCT+TGG | 0.255800 | 4.4:+3496179 | None:intergenic |
| ATCCTTAGGAATGCCTTTCC+TGG | 0.310349 | 4.4:+3495074 | None:intergenic |
| GTCTTCAATAGTACTACTTC+TGG | 0.322343 | 4.4:+3496212 | None:intergenic |
| TTAAGCAAATCTTTGCTTAG+TGG | 0.324336 | 4.4:-3495146 | MS.gene05866:CDS |
| TTTCTATCAAAGCTTATTGC+AGG | 0.332190 | 4.4:-3495769 | MS.gene05866:CDS |
| TAGGAATGCCTTTCCTGGTT+GGG | 0.339467 | 4.4:+3495079 | None:intergenic |
| TTATGGAAGTTTGAGTTTGC+TGG | 0.358493 | 4.4:-3495896 | MS.gene05866:CDS |
| ATTGATCTTGTTCTTCTTCG+AGG | 0.368375 | 4.4:+3495327 | None:intergenic |
| ACTTCTTGCCTAAGGTTCTT+GGG | 0.373704 | 4.4:+3496180 | None:intergenic |
| GAAATTAAATATTTAAAACT+TGG | 0.383018 | 4.4:+3494302 | None:intergenic |
| CATCTAGAATGGTCTCTAAC+AGG | 0.397131 | 4.4:-3494828 | MS.gene05866:intron |
| CTAAACAAATAAAACCTTGT+TGG | 0.397657 | 4.4:+3495696 | None:intergenic |
| GCTGCCTGGAGAGGTGTTGT+TGG | 0.402177 | 4.4:-3495051 | MS.gene05866:CDS |
| CCTCTCCAGGCAGCATCCTT+AGG | 0.416321 | 4.4:+3495060 | None:intergenic |
| CGGGCAACGAAAACAGATAA+TGG | 0.418561 | 4.4:+3495968 | None:intergenic |
| ACTAGCTCAAGGCCATTTCA+TGG | 0.421152 | 4.4:-3496100 | MS.gene05866:CDS |
| GGTATGGAGGTTTCCATTGG+TGG | 0.421306 | 4.4:+3496234 | None:intergenic |
| AGTGGTGTTGGCATAGTTAG+TGG | 0.423570 | 4.4:-3495128 | MS.gene05866:CDS |
| AGGATGCAAAGTTCATTTGA+TGG | 0.433365 | 4.4:-3496142 | MS.gene05866:CDS |
| TGGAACAGTGATAGGCCCTT+TGG | 0.434912 | 4.4:-3495108 | MS.gene05866:CDS |
| CTGGGTATGGAGGTTTCCAT+TGG | 0.435087 | 4.4:+3496231 | None:intergenic |
| CTTGCTACAGTTATAAAAGT+AGG | 0.435399 | 4.4:-3496048 | MS.gene05866:CDS |
| TGCTGAAGAAGCTGGATTGA+TGG | 0.437675 | 4.4:+3494359 | None:intergenic |
| CATTCTAGATGCAGCTTTCG+AGG | 0.450865 | 4.4:+3494840 | None:intergenic |
| AAATCTTTGCTTAGTGGTGT+TGG | 0.456818 | 4.4:-3495140 | MS.gene05866:CDS |
| AACAGGTTTGGGGATAATGC+TGG | 0.462361 | 4.4:-3494459 | MS.gene05866:intron |
| ATAGTTAGTGGAACAGTGAT+AGG | 0.465529 | 4.4:-3495116 | MS.gene05866:CDS |
| TCCATAACAATCTTCTGAAA+AGG | 0.465570 | 4.4:+3495912 | None:intergenic |
| AAAGTTCATTTGATGGATGA+AGG | 0.470206 | 4.4:-3496135 | MS.gene05866:CDS |
| AAGCTTATTGCAGGAGGGAC+TGG | 0.473481 | 4.4:-3495760 | MS.gene05866:CDS |
| GTATCAGAACTTCTTGCCTA+AGG | 0.476536 | 4.4:+3496172 | None:intergenic |
| GACATGCAGCTAACACTGCT+TGG | 0.478430 | 4.4:-3494404 | MS.gene05866:CDS |
| TCCAGCTTCTTCAGCATCCA+AGG | 0.486437 | 4.4:-3494352 | MS.gene05866:CDS |
| TTAGGAATGCCTTTCCTGGT+TGG | 0.492672 | 4.4:+3495078 | None:intergenic |
| GAATGTGTTTAAGATAAGAA+AGG | 0.493342 | 4.4:-3494382 | MS.gene05866:CDS |
| GAAGCCAACAACACCTCTCC+AGG | 0.495160 | 4.4:+3495047 | None:intergenic |
| TCTTCAATAGTACTACTTCT+GGG | 0.497590 | 4.4:+3496213 | None:intergenic |
| AAGAGGCTCACCATCTTTCA+CGG | 0.501387 | 4.4:+3495948 | None:intergenic |
| CTCGAAAGCTGCATCTAGAA+TGG | 0.505377 | 4.4:-3494839 | MS.gene05866:CDS |
| TTTCATGGTAATCAAAACCT+TGG | 0.507129 | 4.4:-3496085 | MS.gene05866:CDS |
| CCCTTGGATGCTGAAGAAGC+TGG | 0.507837 | 4.4:+3494351 | None:intergenic |
| ATGCAGGACCCAAGAACCTT+AGG | 0.511103 | 4.4:-3496188 | MS.gene05866:CDS |
| ATCAAATGAACTTTGCATCC+TGG | 0.511507 | 4.4:+3496144 | None:intergenic |
| TTTACTTACTGACTGCATCA+AGG | 0.515962 | 4.4:+3495024 | None:intergenic |
| GGTTAAATCCCAACCAGGAA+AGG | 0.518740 | 4.4:-3495087 | MS.gene05866:CDS |
| AATAGTACTACTTCTGGGTA+TGG | 0.522311 | 4.4:+3496218 | None:intergenic |
| CCTGGTTGGGATTTAACCAA+AGG | 0.523788 | 4.4:+3495092 | None:intergenic |
| CATGGTAATCAAAACCTTGG+AGG | 0.527008 | 4.4:-3496082 | MS.gene05866:CDS |
| AAGTAGGAGAAGATCTTCAA+TGG | 0.531788 | 4.4:-3496032 | MS.gene05866:CDS |
| TTGGAAGGAGTTTGCTCCGA+GGG | 0.533309 | 4.4:-3495809 | MS.gene05866:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.538649 | 4.4:+3495025 | None:intergenic |
| CTATCAAAGCTTATTGCAGG+AGG | 0.540727 | 4.4:-3495766 | MS.gene05866:CDS |
| ACAGGTTTGGGGATAATGCT+GGG | 0.544267 | 4.4:-3494458 | MS.gene05866:intron |
| CTGGTTGGGATTTAACCAAA+GGG | 0.546559 | 4.4:+3495093 | None:intergenic |
| GCATTCCTAAGGATGCTGCC+TGG | 0.549502 | 4.4:-3495065 | MS.gene05866:CDS |
| CCTAAGGATGCTGCCTGGAG+AGG | 0.558020 | 4.4:-3495060 | MS.gene05866:CDS |
| GAGCATGTATTTGCAACTGC+GGG | 0.564766 | 4.4:-3494426 | MS.gene05866:CDS |
| TGATTGTAATCTTCAACCCT+CGG | 0.567569 | 4.4:+3495793 | None:intergenic |
| AGTACTATTGAAGACTATGC+AGG | 0.580566 | 4.4:-3496204 | MS.gene05866:CDS |
| TATCAAAGCTTATTGCAGGA+GGG | 0.582026 | 4.4:-3495765 | MS.gene05866:CDS |
| AGAGGCTCACCATCTTTCAC+GGG | 0.590880 | 4.4:+3495949 | None:intergenic |
| AACCAGGAAAGGCATTCCTA+AGG | 0.592978 | 4.4:-3495076 | MS.gene05866:CDS |
| GATGGTGAGCCTCTTAGCTA+CGG | 0.597136 | 4.4:-3495940 | MS.gene05866:CDS |
| AGTACTACTTCTGGGTATGG+AGG | 0.603110 | 4.4:+3496221 | None:intergenic |
| TTCCATTGGTGGCATAACTG+TGG | 0.603164 | 4.4:+3496245 | None:intergenic |
| TTCCACAGTTATGCCACCAA+TGG | 0.606555 | 4.4:-3496247 | MS.gene05866:CDS |
| TTGGCCTAACAACAGGTTTG+GGG | 0.609199 | 4.4:-3494469 | MS.gene05866:intron |
| CCTTTGGTTAAATCCCAACC+AGG | 0.610932 | 4.4:-3495092 | MS.gene05866:CDS |
| AGGGACTGGTCAGATTGTGA+AGG | 0.612855 | 4.4:-3495746 | MS.gene05866:CDS |
| CAGCAATGCTTACACCAACA+AGG | 0.615781 | 4.4:-3495710 | MS.gene05866:intron |
| AAGGTCAAGCCGTAGCTAAG+AGG | 0.626212 | 4.4:+3495931 | None:intergenic |
| GGGACTGGTCAGATTGTGAA+GGG | 0.629455 | 4.4:-3495745 | MS.gene05866:CDS |
| CCAGCTTCTTCAGCATCCAA+GGG | 0.644852 | 4.4:-3494351 | MS.gene05866:CDS |
| AGTAAGAGCAACAAGAGTGT+CGG | 0.655465 | 4.4:-3495352 | MS.gene05866:CDS |
| TTTAACTAAAGATGAGCCTG+TGG | 0.662996 | 4.4:-3496007 | MS.gene05866:CDS |
| AGAGCATCTAGCTTCACCAC+AGG | 0.663366 | 4.4:+3495991 | None:intergenic |
| AGAGCATGTATTTGCAACTG+CGG | 0.663824 | 4.4:-3494427 | MS.gene05866:CDS |
| TCTAGATGCAGCTTTCGAGG+TGG | 0.663909 | 4.4:+3494843 | None:intergenic |
| GAAGTTCTGATACAAATACC+AGG | 0.674691 | 4.4:-3496162 | MS.gene05866:CDS |
| ATTGGAAGGAGTTTGCTCCG+AGG | 0.684090 | 4.4:-3495810 | MS.gene05866:CDS |
| CAGGTTTGGGGATAATGCTG+GGG | 0.688874 | 4.4:-3494457 | MS.gene05866:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAACATATTGATAAAC+AGG | + | chr4.4:3496067-3496086 | None:intergenic | 15.0% |
| !! | TTAAATTAATTCATCATTCT+TGG | - | chr4.4:3496093-3496112 | MS.gene05866:CDS | 15.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | + | chr4.4:3495917-3495936 | None:intergenic | 20.0% |
| !!! | ACTAAATGATACTTTTTTCA+TGG | + | chr4.4:3495097-3495116 | None:intergenic | 20.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | - | chr4.4:3495269-3495288 | MS.gene05866:intron | 25.0% |
| ! | CTAAACAAATAAAACCTTGT+TGG | + | chr4.4:3494888-3494907 | None:intergenic | 25.0% |
| ! | GGTTAATGAAGTTCAATAAA+TGG | - | chr4.4:3495883-3495902 | MS.gene05866:CDS | 25.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | - | chr4.4:3494753-3494772 | MS.gene05866:intron | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | - | chr4.4:3495333-3495352 | MS.gene05866:CDS | 25.0% |
| !! | ACAGTAAACTAAGAACTTTT+TGG | - | chr4.4:3495120-3495139 | MS.gene05866:CDS | 25.0% |
| !! | CAGTAAACTAAGAACTTTTT+GGG | - | chr4.4:3495121-3495140 | MS.gene05866:CDS | 25.0% |
| !! | GAATGTGTTTAAGATAAGAA+AGG | - | chr4.4:3496199-3496218 | MS.gene05866:CDS | 25.0% |
| !!! | AAGGTTTTATTTGTTTAGCA+AGG | - | chr4.4:3494890-3494909 | MS.gene05866:CDS | 25.0% |
| !!! | TGTCATAAAGTGTTTTTACT+TGG | + | chr4.4:3495589-3495608 | None:intergenic | 25.0% |
| AAAAATCACCAGGTACAAAA+AGG | - | chr4.4:3495148-3495167 | MS.gene05866:CDS | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | + | chr4.4:3495616-3495635 | None:intergenic | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | + | chr4.4:3495615-3495634 | None:intergenic | 30.0% | |
| CAAAAATGATCTTGATTGGA+AGG | - | chr4.4:3494757-3494776 | MS.gene05866:intron | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | - | chr4.4:3494533-3494552 | MS.gene05866:intron | 30.0% | |
| GTTCAGAAGAAATTCTTGAA+TGG | - | chr4.4:3496011-3496030 | MS.gene05866:CDS | 30.0% | |
| TCTTCAATAGTACTACTTCT+GGG | + | chr4.4:3494371-3494390 | None:intergenic | 30.0% | |
| TTAAGCAAATCTTTGCTTAG+TGG | - | chr4.4:3495435-3495454 | MS.gene05866:intron | 30.0% | |
| TTTCATGGTAATCAAAACCT+TGG | - | chr4.4:3494496-3494515 | MS.gene05866:intron | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | - | chr4.4:3494812-3494831 | MS.gene05866:intron | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | - | chr4.4:3494446-3494465 | MS.gene05866:CDS | 30.0% |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | - | chr4.4:3494668-3494687 | MS.gene05866:intron | 30.0% |
| ! | GTTTTTGACGTTTAAATTCG+TGG | - | chr4.4:3495862-3495881 | MS.gene05866:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | + | chr4.4:3494672-3494691 | None:intergenic | 30.0% |
| !! | AAACTAAGAACTTTTTGGGA+TGG | - | chr4.4:3495125-3495144 | MS.gene05866:CDS | 30.0% |
| !! | TCATTTTTGTATACCGTTTG+AGG | + | chr4.4:3495285-3495304 | None:intergenic | 30.0% |
| !!! | AGGTTTTGATTACCATGAAA+TGG | + | chr4.4:3494496-3494515 | None:intergenic | 30.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | - | chr4.4:3495441-3495460 | MS.gene05866:intron | 35.0% | |
| AAGTAGGAGAAGATCTTCAA+TGG | - | chr4.4:3494549-3494568 | MS.gene05866:intron | 35.0% | |
| AATAGTACTACTTCTGGGTA+TGG | + | chr4.4:3494366-3494385 | None:intergenic | 35.0% | |
| ACACGCAGTTAATGAACATT+TGG | + | chr4.4:3495934-3495953 | None:intergenic | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | + | chr4.4:3494575-3494594 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | - | chr4.4:3494439-3494458 | MS.gene05866:CDS | 35.0% | |
| AGTAAGTAGAGTTAGCTGTT+TGG | + | chr4.4:3495796-3495815 | None:intergenic | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | - | chr4.4:3494377-3494396 | MS.gene05866:CDS | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | - | chr4.4:3495190-3495209 | MS.gene05866:intron | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | - | chr4.4:3495465-3495484 | MS.gene05866:intron | 35.0% | |
| ATCAAATGAACTTTGCATCC+TGG | + | chr4.4:3494440-3494459 | None:intergenic | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | + | chr4.4:3495257-3495276 | None:intergenic | 35.0% | |
| CATACTTATGTGTATGTAGC+TGG | + | chr4.4:3495825-3495844 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | + | chr4.4:3494372-3494391 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | - | chr4.4:3494816-3494835 | MS.gene05866:intron | 35.0% | |
| TATGTGTATGTAGCTGGAAT+TGG | + | chr4.4:3495819-3495838 | None:intergenic | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | + | chr4.4:3495186-3495205 | None:intergenic | 35.0% | |
| TGATTGTAATCTTCAACCCT+CGG | + | chr4.4:3494791-3494810 | None:intergenic | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | + | chr4.4:3495011-3495030 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | - | chr4.4:3495388-3495407 | MS.gene05866:CDS | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | + | chr4.4:3495012-3495031 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | - | chr4.4:3494574-3494593 | MS.gene05866:intron | 35.0% | |
| ! | AAGAGAAACATTTTCCTCCA+AGG | + | chr4.4:3494516-3494535 | None:intergenic | 35.0% |
| ! | CGTCAAAAACTACGATTTTC+AGG | + | chr4.4:3495852-3495871 | None:intergenic | 35.0% |
| ! | GAAGTTCTGATACAAATACC+AGG | - | chr4.4:3494419-3494438 | MS.gene05866:CDS | 35.0% |
| ! | GCTTAACTTTTCTGTCATCT+TGG | + | chr4.4:3495421-3495440 | None:intergenic | 35.0% |
| ! | TTACTTACTGACTGCATCAA+GGG | + | chr4.4:3495559-3495578 | None:intergenic | 35.0% |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | - | chr4.4:3494685-3494704 | MS.gene05866:intron | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | + | chr4.4:3495560-3495579 | None:intergenic | 35.0% |
| AACTTCTTGCCTAAGGTTCT+TGG | + | chr4.4:3494405-3494424 | None:intergenic | 40.0% | |
| AATCACCAGGTACAAAAAGG+AGG | - | chr4.4:3495151-3495170 | MS.gene05866:CDS | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | + | chr4.4:3494404-3494423 | None:intergenic | 40.0% | |
| AGAGCATGTATTTGCAACTG+CGG | - | chr4.4:3496154-3496173 | MS.gene05866:CDS | 40.0% | |
| ATCATTCTTGGCCTAACAAC+AGG | - | chr4.4:3496105-3496124 | MS.gene05866:CDS | 40.0% | |
| CATGGTAATCAAAACCTTGG+AGG | - | chr4.4:3494499-3494518 | MS.gene05866:intron | 40.0% | |
| CTATCAAAGCTTATTGCAGG+AGG | - | chr4.4:3494815-3494834 | MS.gene05866:intron | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | + | chr4.4:3495491-3495510 | None:intergenic | 40.0% | |
| GAATGGTCTCTAACAGGTAA+AGG | - | chr4.4:3495759-3495778 | MS.gene05866:CDS | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | + | chr4.4:3494412-3494431 | None:intergenic | 40.0% | |
| TGTAGTGTACAAGTGGATGA+TGG | - | chr4.4:3495340-3495359 | MS.gene05866:CDS | 40.0% | |
| TTATCCCCAAACCTGTTGTT+AGG | + | chr4.4:3496119-3496138 | None:intergenic | 40.0% | |
| ! | AGATGAGAAAAATGGTGCTG+TGG | - | chr4.4:3495198-3495217 | MS.gene05866:intron | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | - | chr4.4:3495229-3495248 | MS.gene05866:intron | 40.0% |
| ! | CATCTAGAATGGTCTCTAAC+AGG | - | chr4.4:3495753-3495772 | MS.gene05866:CDS | 40.0% |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | - | chr4.4:3494470-3494489 | MS.gene05866:intron | 40.0% |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | + | chr4.4:3495159-3495178 | None:intergenic | 40.0% |
| ! | TTTGGGATGGAAAAATCACC+AGG | - | chr4.4:3495138-3495157 | MS.gene05866:CDS | 40.0% |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | - | chr4.4:3494719-3494738 | MS.gene05866:intron | 40.0% |
| AACAGGTTTGGGGATAATGC+TGG | - | chr4.4:3496122-3496141 | MS.gene05866:CDS | 45.0% | |
| AAGAGGCTCACCATCTTTCA+CGG | + | chr4.4:3494636-3494655 | None:intergenic | 45.0% | |
| ACAGGTTTGGGGATAATGCT+GGG | - | chr4.4:3496123-3496142 | MS.gene05866:CDS | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | - | chr4.4:3494481-3494500 | MS.gene05866:intron | 45.0% | |
| AGTACTACTTCTGGGTATGG+AGG | + | chr4.4:3494363-3494382 | None:intergenic | 45.0% | |
| ATCCTTAGGAATGCCTTTCC+TGG | + | chr4.4:3495510-3495529 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | - | chr4.4:3494871-3494890 | MS.gene05866:CDS | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | + | chr4.4:3495744-3495763 | None:intergenic | 45.0% | |
| CCTGGTTGGGATTTAACCAA+AGG | + | chr4.4:3495492-3495511 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | - | chr4.4:3495489-3495508 | MS.gene05866:intron | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | + | chr4.4:3494616-3494635 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | - | chr4.4:3495742-3495761 | MS.gene05866:CDS | 45.0% | |
| CTTGGCCTAACAACAGGTTT+GGG | - | chr4.4:3496111-3496130 | MS.gene05866:CDS | 45.0% | |
| GAGCATGTATTTGCAACTGC+GGG | - | chr4.4:3496155-3496174 | MS.gene05866:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | - | chr4.4:3495494-3495513 | MS.gene05866:intron | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | + | chr4.4:3495505-3495524 | None:intergenic | 45.0% | |
| TCTTGGCCTAACAACAGGTT+TGG | - | chr4.4:3496110-3496129 | MS.gene05866:CDS | 45.0% | |
| TGCTGAAGAAGCTGGATTGA+TGG | + | chr4.4:3496225-3496244 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | + | chr4.4:3495506-3495525 | None:intergenic | 45.0% | |
| TTCCACAGTTATGCCACCAA+TGG | - | chr4.4:3494334-3494353 | MS.gene05866:CDS | 45.0% | |
| TTGGCCTAACAACAGGTTTG+GGG | - | chr4.4:3496112-3496131 | MS.gene05866:CDS | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | - | chr4.4:3495028-3495047 | MS.gene05866:intron | 45.0% |
| ! | TTCCATTGGTGGCATAACTG+TGG | + | chr4.4:3494339-3494358 | None:intergenic | 45.0% |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | - | chr4.4:3494623-3494642 | MS.gene05866:intron | 45.0% |
| !! | AACCAGGAAAGGCATTCCTA+AGG | - | chr4.4:3495505-3495524 | MS.gene05866:intron | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | - | chr4.4:3495203-3495222 | MS.gene05866:intron | 45.0% |
| !! | AGCATTTTTCAGTACGCCCT+TGG | + | chr4.4:3496249-3496268 | None:intergenic | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | - | chr4.4:3495453-3495472 | MS.gene05866:intron | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | - | chr4.4:3495204-3495223 | MS.gene05866:intron | 45.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | - | chr4.4:3494821-3494840 | MS.gene05866:intron | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | + | chr4.4:3494653-3494672 | None:intergenic | 50.0% | |
| AGAGGCTCACCATCTTTCAC+GGG | + | chr4.4:3494635-3494654 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | - | chr4.4:3494393-3494412 | MS.gene05866:CDS | 50.0% | |
| CAGGTTTGGGGATAATGCTG+GGG | - | chr4.4:3496124-3496143 | MS.gene05866:CDS | 50.0% | |
| CCAGCTTCTTCAGCATCCAA+GGG | - | chr4.4:3496230-3496249 | MS.gene05866:CDS | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | + | chr4.4:3494353-3494372 | None:intergenic | 50.0% | |
| GACATGCAGCTAACACTGCT+TGG | - | chr4.4:3496177-3496196 | MS.gene05866:CDS | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | - | chr4.4:3494641-3494660 | MS.gene05866:intron | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | + | chr4.4:3494350-3494369 | None:intergenic | 50.0% | |
| GGTCTCTAACAGGTAAAGGC+TGG | - | chr4.4:3495763-3495782 | MS.gene05866:CDS | 50.0% | |
| TCCAGCTTCTTCAGCATCCA+AGG | - | chr4.4:3496229-3496248 | MS.gene05866:CDS | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | + | chr4.4:3495741-3495760 | None:intergenic | 50.0% | |
| TGGAACAGTGATAGGCCCTT+TGG | - | chr4.4:3495473-3495492 | MS.gene05866:intron | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | + | chr4.4:3494593-3494612 | None:intergenic | 50.0% |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | - | chr4.4:3494771-3494790 | MS.gene05866:intron | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | - | chr4.4:3494772-3494791 | MS.gene05866:intron | 50.0% |
| !! | AGGGACTGGTCAGATTGTGA+AGG | - | chr4.4:3494835-3494854 | MS.gene05866:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | - | chr4.4:3494836-3494855 | MS.gene05866:CDS | 50.0% |
| CCCTTGGATGCTGAAGAAGC+TGG | + | chr4.4:3496233-3496252 | None:intergenic | 55.0% | |
| GAAGCCAACAACACCTCTCC+AGG | + | chr4.4:3495537-3495556 | None:intergenic | 55.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | - | chr4.4:3495516-3495535 | MS.gene05866:intron | 55.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | - | chr4.4:3495521-3495540 | MS.gene05866:intron | 60.0% | |
| CCTCTCCAGGCAGCATCCTT+AGG | + | chr4.4:3495524-3495543 | None:intergenic | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | - | chr4.4:3495530-3495549 | MS.gene05866:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3494314 | 3496289 | 3494314 | ID=MS.gene05866 |
| chr4.4 | mRNA | 3494314 | 3496289 | 3494314 | ID=MS.gene05866.t1;Parent=MS.gene05866 |
| chr4.4 | exon | 3495711 | 3496289 | 3495711 | ID=MS.gene05866.t1.exon1;Parent=MS.gene05866.t1 |
| chr4.4 | CDS | 3495711 | 3496289 | 3495711 | ID=cds.MS.gene05866.t1;Parent=MS.gene05866.t1 |
| chr4.4 | exon | 3495313 | 3495443 | 3495313 | ID=MS.gene05866.t1.exon2;Parent=MS.gene05866.t1 |
| chr4.4 | CDS | 3495313 | 3495443 | 3495313 | ID=cds.MS.gene05866.t1;Parent=MS.gene05866.t1 |
| chr4.4 | exon | 3495033 | 3495199 | 3495033 | ID=MS.gene05866.t1.exon3;Parent=MS.gene05866.t1 |
| chr4.4 | CDS | 3495033 | 3495199 | 3495033 | ID=cds.MS.gene05866.t1;Parent=MS.gene05866.t1 |
| chr4.4 | exon | 3494829 | 3494913 | 3494829 | ID=MS.gene05866.t1.exon4;Parent=MS.gene05866.t1 |
| chr4.4 | CDS | 3494829 | 3494913 | 3494829 | ID=cds.MS.gene05866.t1;Parent=MS.gene05866.t1 |
| chr4.4 | exon | 3494314 | 3494476 | 3494314 | ID=MS.gene05866.t1.exon5;Parent=MS.gene05866.t1 |
| chr4.4 | CDS | 3494314 | 3494476 | 3494314 | ID=cds.MS.gene05866.t1;Parent=MS.gene05866.t1 |
| Gene Sequence |
| Protein sequence |
