AlfalfaGEDB | MS.gene072719

M. sativa cultivar XinJiangDaYe / MS.gene072719

KEGG: K00770
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0051273 GO:0051274 GO:0071704 GO:0110165 GO:1901576
PFAM: PF03552.17 PF14570.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072719.t1	XP_003625939.2	99.3	1173	6	1	1	1173	1	1171	0.00E+00	2240.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072719.t1	Q9SRW9	76.8	1192	246	12	1	1173	1	1181	0.0e+00	1833.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072719.t1	G7KSQ6	99.3	1173	6	1	1	1173	1	1171	0.0e+00	2240.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene072719	0.858728	6.75E-63	-1.69E-46
MS.gene049418	MS.gene072719	0.824665	7.14E-54	-1.69E-46
MS.gene049989	MS.gene072719	0.884662	1.58E-71	-1.69E-46
MS.gene050297	MS.gene072719	0.883089	6.03E-71	-1.69E-46
MS.gene050310	MS.gene072719	0.827869	1.23E-54	-1.69E-46
MS.gene050648	MS.gene072719	0.837792	4.22E-57	-1.69E-46
MS.gene051067	MS.gene072719	0.825815	3.82E-54	-1.69E-46
MS.gene051094	MS.gene072719	0.853369	2.50E-61	-1.69E-46
MS.gene051263	MS.gene072719	0.84872	5.12E-60	-1.69E-46
MS.gene051478	MS.gene072719	0.834242	3.36E-56	-1.69E-46

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene000953	MS.gene072719	PPI
MS.gene006566	MS.gene072719	PPI
MS.gene026159	MS.gene072719	PPI
MS.gene031743	MS.gene072719	PPI
MS.gene036965	MS.gene072719	PPI
MS.gene065896	MS.gene072719	PPI
MS.gene072719	MS.gene33302	PPI
MS.gene072719	MS.gene026160	PPI
MS.gene33300	MS.gene072719	PPI
MS.gene88628	MS.gene072719	PPI

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene072719.t1	MTR_7g109200	99.318	1173	6	1	1	1173	1	1171	2416
MS.gene072719.t1	MTR_4g077910	66.167	1135	335	16	61	1173	35	1142	1518
MS.gene072719.t1	MTR_5g029190	64.779	1130	357	16	67	1173	10	1121	1466
MS.gene072719.t1	MTR_1g039445	61.752	1153	366	21	43	1173	6	1105	1404
MS.gene072719.t1	MTR_1g039480	60.361	1163	409	18	33	1173	1	1133	1396
MS.gene072719.t1	MTR_2g438220	65.778	938	300	7	234	1162	89	1014	1303
MS.gene072719.t1	MTR_7g116230	58.307	933	237	14	247	1170	73	862	1040
MS.gene072719.t1	MTR_4g130510	48.430	892	361	15	282	1158	214	1021	851
MS.gene072719.t1	MTR_8g092590	49.063	907	351	15	281	1158	255	1079	838
MS.gene072719.t1	MTR_2g016630	44.081	1039	448	20	172	1158	3	960	836

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene072719.t1	AT1G02730	78.859	1192	222	12	1	1173	1	1181	1893
MS.gene072719.t1	AT3G03050	65.086	1160	359	17	35	1173	11	1145	1531
MS.gene072719.t1	AT5G16910	63.629	1163	371	15	35	1173	11	1145	1492
MS.gene072719.t1	AT4G38190	60.312	1154	374	19	27	1158	1	1092	1401
MS.gene072719.t1	AT2G33100	65.748	943	300	9	228	1159	95	1025	1299
MS.gene072719.t1	AT2G33100	65.748	943	300	9	228	1159	95	1025	1299
MS.gene072719.t1	AT1G32180	66.055	872	271	7	300	1157	107	967	1198
MS.gene072719.t1	AT1G32180	66.055	872	271	7	300	1157	107	967	1198
MS.gene072719.t1	AT5G09870	44.799	1067	454	22	162	1158	51	1052	853
MS.gene072719.t1	AT5G64740	47.928	941	360	18	267	1158	208	1067	849

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

Find 290 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTTGGATGGATATA+TGG	0.308902	7.3:-5664952	MS.gene072719:CDS
AAAATCACTGTCTCTTCTGG+AGG	0.612762	7.3:-5668392	MS.gene072719:CDS
AAACAAATACATCGATTCCA+GGG	0.635319	7.3:+5666949	None:intergenic
AAACTGATGTGTGGAATGAA+AGG	0.572009	7.3:-5667969	MS.gene072719:CDS
AAAGATGGATTTGGTTCCAA+TGG	0.495527	7.3:-5667594	MS.gene072719:CDS
AAAGCAACTTGGATGTCTGA+TGG	0.605700	7.3:-5666486	MS.gene072719:CDS
AAAGCACATACCTTCCCTCA+AGG	0.627390	7.3:+5665539	None:intergenic
AAAGGACTTCTGGGAAGGAG+AGG	0.631220	7.3:-5664163	MS.gene072719:CDS
AAAGGGAGGTCTGATCTCCC+TGG	0.554077	7.3:-5666966	MS.gene072719:CDS
AAATAAGCTTCAGGATTTCT+TGG	0.274508	7.3:+5666726	None:intergenic

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAACAGTTTCATCTC+TGG	-	chr7.3:5664381-5664400	MS.gene072719:CDS	30.0%
AAAAGAGTTGGATGGATATA+TGG	-	chr7.3:5667509-5667528	MS.gene072719:CDS	30.0%
AAATAAGCTTCAGGATTTCT+TGG	+	chr7.3:5665738-5665757	None:intergenic	30.0%
AACTGCAAGGATAGATAAAA+TGG	+	chr7.3:5665583-5665602	None:intergenic	30.0%
ACTAAAGGAACTTATGGTTA+TGG	-	chr7.3:5664828-5664847	MS.gene072719:CDS	30.0%
AGCCTATCTGTTAAATTGAT+TGG	+	chr7.3:5667635-5667654	None:intergenic	30.0%
ATCAGAAACATTGAAGTGAA+AGG	+	chr7.3:5667782-5667801	None:intergenic	30.0%
ATTCAGCATTATCAAACACT+TGG	-	chr7.3:5666359-5666378	MS.gene072719:intron	30.0%
ATTCCTTACCTGAATCAATA+AGG	-	chr7.3:5665859-5665878	MS.gene072719:intron	30.0%
CACACATAAAACACAATGTT+AGG	+	chr7.3:5666572-5666591	None:intergenic	30.0%

Showing 1 to 10 of 348 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	5664036	5668447	5664036	ID=MS.gene072719
chr7.3	mRNA	5664036	5668447	5664036	ID=MS.gene072719.t1;Parent=MS.gene072719
chr7.3	exon	5667504	5668447	5667504	ID=MS.gene072719.t1.exon1;Parent=MS.gene072719.t1
chr7.3	CDS	5667504	5668447	5667504	ID=cds.MS.gene072719.t1;Parent=MS.gene072719.t1
chr7.3	exon	5666413	5667214	5666413	ID=MS.gene072719.t1.exon2;Parent=MS.gene072719.t1
chr7.3	CDS	5666413	5667214	5666413	ID=cds.MS.gene072719.t1;Parent=MS.gene072719.t1
chr7.3	exon	5664036	5665811	5664036	ID=MS.gene072719.t1.exon3;Parent=MS.gene072719.t1
chr7.3	CDS	5664036	5665811	5664036	ID=cds.MS.gene072719.t1;Parent=MS.gene072719.t1

Gene Sequence

>MS.gene072719

ATGGTGAACACAACATCTTCTTCCTCTCCTGTGAAAATCACTGTCTCTTCTGGAGGCAAAACTGGAGGAAGCAGAAACATGGGTTTAACAAGTCCACTACCACGTTCTTCAGTCTCTAACAACAACAATTCACCTCTCAGCAACCGTTCAAACCGGCTTTCCGGCGGCGGAGCCGCCATAAGAAGGTTATCAGGTGGTGGAGGTAACTATTCATCCATGTCCAAAGATGATGTTACAGAAGACACAACAACATCGGAATATGTTTCATACACAGTTCATATTCCTCCAACACCAGATCGCATGCCACTGTCATCTTCACAAACAAGCCTCCCTGAAGAAAACAACAAAAACAACAGTTTCATCTCTGGTACGATTTTTACCGGAGGTTTTAATTCCGTTACACGAGGCCATGTCATCGAATGCTCCAATGAAAGCAATGATCTACCGTTGAAATCTAAACTGATGTGTGGAATGAAAGGCTGTGATGAAGAAGCGATCAAGGGTTGTACCTGTGAATGCGGATTTAAGATTTGTAGGGATTGTTACAAGGAGATTTGTGGAAATGGAGGTGGTAGTAAATGTCCAGGTTGCAAAGATTCTTACAACAATGTTAGTGATGATGAAGAAGAGGAAGAGGAAGAGGAAGAGGTTTCTGAGTGCGAAGATCAAGCTCAACCGTTACCTTCTATGGCGGAATTCAAGTTGGATAAGAGGCTTTCTGTTGTGAAATCGTTTAAAGCTCAGAATCAGAATCATCCACCTGATTTTGATCATACTCGTTGGTTATTTGAAACTAAAGGAACTTATGGTTATGGAAATGCTGTTTGGCCTAAAGATGGATTTGGTTCCAATGGTTATGAACCTCCTCCTGATTTTGGAAAGAAATCTAGAAGACCCTTGACAAGAAAAGTTGGTGTTTCTGCTGCTATTCTCAGTCCTTATAGGTGAGTCTTTTCAAAATCCAAGCTTTTCTTTTTGTTTTAAATTTGAATATTATTTTGAAATATACAACCTTTTGCTTTTAGTTGATTAATTTTTTTTATTCTTTTTAAATATATCATTTTTTGTTCTTGGTTCTTGATGTTTTGTTTTAATACTTGCTAAATATGTTCATGTTAGAATTGGTTATGTAATGTAATATTCAATTTAGAACCAAAATAAGAAAACAACTTGATTGAGTGAATTTAAGTGTTGAATTTCTAATGTATTCGTTTGGTTTGTTTGTTGATTAAGGTTGCTTATTCTGATGCGTCTTGCTGCACTTGGTTTATTTCTTACATGGAGGATTCGACACCCAAACCACGAGGCAATGTGGTTGTGGGCAATGTCAGTGACTTGTGAGCTTTGGTTTGCATTTTCATGGCTTCTTGATCAGCTTCCAAAGCTGTGTCCTGTGAACAGAGTTACTGATTTGTCTGTTTTGAAAGAACGGTTCGAGTCTCCAAATCTGCGAAACCCGAAAGGGAGGTCTGATCTCCCTGGAATCGATGTATTTGTTTCAACTGCAGATCCAGAAAAGGAGCCACCTCTTGTAACTGCAAACACCATTTTATCTATCCTTGCAGTTGATTACCCTGTGGAAAAAGTTGCTTGTTATTTGTCTGATGATGGTGGAGCTCTTTTGACATTTGAAGCTCTTGCTGAGACTGCTAGTTTTGCAAGATTTTGGGTTCCTTTCTGTAGAAAACACCAAATTGAGCCAAGAAATCCTGAAGCTTATTTTGGTCAGAAGCGCGATTTTCTCAAGAACAAGGTTCGGTTGGACTTTGTTAGGGAGAGAAGAAGGGTGAAGAGGGAATATGATGAATTCAAAGTGAGGATCAATTCCTTACCTGAATCAATAAGGAGAAGATCAGATGCTTACAATGCTCATGAGGAGTTGAGAGCCAAGAAGAAACAGATGGAAACTGGTTCAGATGTATCAGAACTCAAGGTTCCTAAAGCAACTTGGATGTCTGATGGTTCTCTTTGGCCTGGAACATGGTCATCAGCAGAACCTGACCACTCCAGAGGTGACCATGCTGGTATAATTCAGGTAACTTCTTCAACATTATCAATTTCTTGGTGTTGTGTCTTGTTGTATGTAATAATGTAGTGTTTTTGAATATGGATATAAGATATTAGATAGATAGATCACTATCTATAACTATAGTATTGTGTTAACTTTTTCAACATCATCAATTACAAGGTGTTGCGCGTCTTGTGTCTAAATAATTTTGTGTTTCATGTGTACTAATGTAGTGTTTGAATCATAGATATTAGATAGATCAGATCACTATCACTGACTATAGTGTTTGAATCATAGACTCAGGCAACTTCTTCAATTCAGCATTATCAAACACTTGGTGTTATGTCTTGTGTGTAATAATGTTGTGTTATGTCTTGTGTGTAATAATGTTGTGTTTCATGTGTACTAATGTATCCAGTGTTTGAATCTTTTTTTTTTTTTTTTGAATAAATTGTTTGAATCTTAGATTCGGGTAACTTCTTCAGCATTATCAATTACTTGGTGCTGTGTCTTGTGCGTAATAATCCTAACATTGTGTTTTATGTGTGCTAATGTAGTGTTTGAATGATAGATATGAAATATTAGATCACCATCACTAACTATATGCTTAATTAATCTGTTTTTCCAGGCAATGTTGGCTCCACCAAATGTAGAACCAAAATATGGTTCAGAAGCTGATGGAGAGAACTTGATTGACACAACAGATGTTGATGTTAGGTTGCCAATGCTTGTTTATGTGTCTCGTGAGAAGAGGCCGGGATATGATCACAACAAGAAAGCTGGTGCCATGAATGCTCTTGTTCGAACTAGTGCTGTCATGTCCAATGGACCATTCGTTCTCAATCTTGACTGTGATCATTACATCTACAACTCCTTGGCCTTGAGGGAAGGTATGTGCTTTATGCTTGACAGAGGTGGTGACAGGATATGTTATGTTCAATTCCCTCAAAGGTTTGAAGGTATTGACCCCAGTGATCGATATGCGAACCACAACACCGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGTTTACAAGGTCCAATGTATGTTGGAACTGGCTGCATATTCAGAAGAACAGCTCTTTATGGTTTTAGTCCTCCTAGAGCTTCTGAACATCATGGGTGGTTTGGCAGGAGGAAGATTAAGTTGTTTCTGAGAAAATCAAAGGTGTCAAAAAAGGAAGAAGACGAAGTTTCTGTGCCAATCAATGATCACAATGACGATGATGCAGATATTGAATCCTTGCTTCTTCCCAAAAGATTTGGAAATTCTTCCTATCTAGCTGCATCCATTCCAGTTGCAGAATTCCAAGGAAGATTGCTACAAGATTCCAAAGGAAATGGAACACAAGGAAGGCCTGCAGGTTCTCTTGCCGGGCCTCGCGAACCGTTAGATGCTGCTACGGTTGCTGAGGCAATTAGTGTCATATCTTGTTACTATGAGGATAAAACTGAGTGGGGGAAAAGAGTTGGATGGATATATGGTTCAGTTACAGAAGATGTTGTTACCGGTTACAGAATGCACAATAGAGGGTGGAGGTCAGTTTACTGTGTGACCAAAAGAGATGCTTTTAGAGGAACAGCTCCAATCAATTTAACAGATAGGCTACACCAAGTGCTTCGTTGGGCAACAGGATCCGTCGAAATCTTCTTCTCAAGGAACAACGCGTTATTGGCAAGTCCTAGAATGAAATTCTTGCAAAGGGTGGCTTACTTCAATGTTGGAATGTACCCTTTCACTTCAATGTTTCTGATTGTGTACTGCTTCCTACCTGCATTATCCTTATTCTCAGGACAATTCATAGTCCAATCCTTGAGCGTAACATTTCTAGTATTCTTGCTTGGAATCACAGTCACACTATGCTTGCTTGCACTGCTTGAGATCAAATGGTCAGGAATCACTTTACATGATTGGTGGAGAAATGAACAGTTTTGGTTAATCGGCGGAACGAGTGCACATCCTGCAGCTGTTTTACAAGGCTTGTTGAAGGTGATAGCAGGAGTAGACATCTCATTCACACTGACATCTAAGTCAGCCACACCAGAAGACGGAGAAGATGAGTTTGCTGATCTTTATTTGGTGAAATGGAGCTTTCTAATGGTTCCTCCAATCACAATTATGATGGTGAACACTATTGCTATTGCTGTGGGAGTGGCTAGGACTCTATATAGTCCATTTCCACAATGGAGTAGACTTGTTGGAGGGTTGTTTTTCAGCTTTTGGGTTCTGTGTCATCTTTATCCATTTGCAAAAGGACTTCTGGGAAGGAGAGGAAAGGTTCCAACCATTATCTACGTTTGGTCTGGATTACTCTCAATCATTATTTCTATGCTTTGGGTTTATATTAACCCTCCTTCTGGTACAAGACCGCAAGATTATATGAATTTTCAGTTCCCTTAG

Protein sequence

>MS.gene072719.t1

MVNTTSSSSPVKITVSSGGKTGGSRNMGLTSPLPRSSVSNNNNSPLSNRSNRLSGGGAAIRRLSGGGGNYSSMSKDDVTEDTTTSEYVSYTVHIPPTPDRMPLSSSQTSLPEENNKNNSFISGTIFTGGFNSVTRGHVIECSNESNDLPLKSKLMCGMKGCDEEAIKGCTCECGFKICRDCYKEICGNGGGSKCPGCKDSYNNVSDDEEEEEEEEEVSECEDQAQPLPSMAEFKLDKRLSVVKSFKAQNQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGFGSNGYEPPPDFGKKSRRPLTRKVGVSAAILSPYRLLILMRLAALGLFLTWRIRHPNHEAMWLWAMSVTCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARFWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMETGSDVSELKVPKATWMSDGSLWPGTWSSAEPDHSRGDHAGIIQAMLAPPNVEPKYGSEADGENLIDTTDVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAVMSNGPFVLNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRASEHHGWFGRRKIKLFLRKSKVSKKEEDEVSVPINDHNDDDADIESLLLPKRFGNSSYLAASIPVAEFQGRLLQDSKGNGTQGRPAGSLAGPREPLDAATVAEAISVISCYYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIVYCFLPALSLFSGQFIVQSLSVTFLVFLLGITVTLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGEDEFADLYLVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGLFFSFWVLCHLYPFAKGLLGRRGKVPTIIYVWSGLLSIIISMLWVYINPPSGTRPQDYMNFQFP