Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072742.t1 | XP_003611015.2 | 94.9 | 1040 | 47 | 3 | 1 | 1040 | 1 | 1034 | 0.00E+00 | 1897.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072742.t1 | Q9T014 | 46.2 | 1078 | 473 | 17 | 2 | 1040 | 27 | 1036 | 1.0e-246 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072742.t1 | G7KAM7 | 94.9 | 1040 | 47 | 3 | 1 | 1040 | 1 | 1034 | 0.0e+00 | 1897.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene072742 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene050084 | MS.gene072742 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene072742 | 0.854889 | 9.11E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene072742 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene072742 | 0.818027 | 2.43E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene072742 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene051631 | MS.gene072742 | -0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene052216 | MS.gene072742 | 0.801695 | 7.98E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene072742 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene072742 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene072742 | 0.819177 | 1.33E-52 | -1.69E-46 |
| MS.gene052994 | MS.gene072742 | 0.83908 | 1.96E-57 | -1.69E-46 |
| MS.gene053486 | MS.gene072742 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene072742 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene072742 | 0.834308 | 3.23E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene072742 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene072742 | 0.813832 | 2.10E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene072742 | 0.808582 | 2.88E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene072742 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene072742 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene072742 | 0.825317 | 5.01E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene072742 | 0.817665 | 2.93E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene072742 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene072742 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene072742 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene072742 | 0.803721 | 3.05E-49 | -1.69E-46 |
| MS.gene06121 | MS.gene072742 | 0.806686 | 7.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49369 | MS.gene072742 | PPI |
| MS.gene072742 | MS.gene50554 | PPI |
| MS.gene39936 | MS.gene072742 | PPI |
| MS.gene072742 | MS.gene036180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072742.t1 | MTR_5g009530 | 95.577 | 1040 | 40 | 3 | 1 | 1040 | 1 | 1034 | 0.0 | 2048 |
| MS.gene072742.t1 | MTR_5g009530 | 95.301 | 979 | 40 | 3 | 1 | 979 | 1 | 973 | 0.0 | 1921 |
| MS.gene072742.t1 | MTR_5g009530 | 94.154 | 804 | 41 | 3 | 1 | 804 | 1 | 798 | 0.0 | 1556 |
| MS.gene072742.t1 | MTR_8g027985 | 51.250 | 800 | 334 | 15 | 275 | 1040 | 187 | 964 | 0.0 | 728 |
| MS.gene072742.t1 | MTR_2g085210 | 41.283 | 826 | 411 | 15 | 272 | 1040 | 67 | 875 | 1.37e-180 | 548 |
| MS.gene072742.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 204 | 538 | 3.57e-108 | 347 |
| MS.gene072742.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 237 | 571 | 2.61e-107 | 346 |
| MS.gene072742.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 341 | 675 | 1.25e-105 | 345 |
| MS.gene072742.t1 | MTR_2g085210 | 34.763 | 653 | 323 | 14 | 272 | 851 | 67 | 689 | 1.22e-94 | 316 |
| MS.gene072742.t1 | MTR_2g085210 | 34.763 | 653 | 323 | 14 | 272 | 851 | 67 | 689 | 1.28e-94 | 317 |
| MS.gene072742.t1 | MTR_2g016160 | 30.323 | 155 | 105 | 2 | 782 | 933 | 113 | 267 | 5.09e-13 | 71.6 |
| MS.gene072742.t1 | MTR_1g090827 | 23.643 | 258 | 183 | 9 | 789 | 1036 | 21 | 274 | 5.95e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072742.t1 | AT4G11110 | 47.280 | 1066 | 467 | 19 | 8 | 1040 | 33 | 1036 | 0.0 | 882 |
| MS.gene072742.t1 | AT2G46340 | 44.681 | 1081 | 496 | 24 | 2 | 1040 | 9 | 1029 | 0.0 | 800 |
| MS.gene072742.t1 | AT2G46340 | 44.681 | 1081 | 496 | 24 | 2 | 1040 | 9 | 1029 | 0.0 | 800 |
| MS.gene072742.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene072742.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene072742.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene072742.t1 | AT3G15354 | 40.000 | 815 | 407 | 14 | 272 | 1040 | 66 | 844 | 0.0 | 552 |
| MS.gene072742.t1 | AT3G15354 | 39.264 | 815 | 405 | 15 | 272 | 1040 | 66 | 836 | 1.67e-174 | 531 |
| MS.gene072742.t1 | AT3G15354 | 44.649 | 598 | 285 | 9 | 485 | 1040 | 1 | 594 | 5.25e-165 | 498 |
| MS.gene072742.t1 | AT3G15354 | 44.649 | 598 | 285 | 9 | 485 | 1040 | 1 | 594 | 5.25e-165 | 498 |
| MS.gene072742.t1 | AT1G53090 | 46.101 | 577 | 286 | 8 | 485 | 1040 | 1 | 573 | 2.80e-164 | 496 |
| MS.gene072742.t1 | AT2G32950 | 43.659 | 410 | 207 | 5 | 630 | 1039 | 175 | 560 | 5.48e-111 | 356 |
| MS.gene072742.t1 | AT2G32950 | 43.659 | 410 | 207 | 5 | 630 | 1039 | 288 | 673 | 2.61e-109 | 355 |
| MS.gene072742.t1 | AT1G53090 | 34.775 | 601 | 317 | 10 | 278 | 853 | 60 | 610 | 4.75e-99 | 326 |
| MS.gene072742.t1 | AT3G15354 | 34.505 | 626 | 331 | 12 | 272 | 851 | 66 | 658 | 8.15e-99 | 327 |
| MS.gene072742.t1 | AT5G52250 | 34.877 | 324 | 184 | 11 | 727 | 1037 | 71 | 380 | 8.57e-43 | 161 |
| MS.gene072742.t1 | AT5G23730 | 34.627 | 335 | 179 | 12 | 728 | 1036 | 41 | 361 | 1.08e-42 | 160 |
| MS.gene072742.t1 | AT2G21390 | 24.419 | 258 | 181 | 9 | 789 | 1036 | 21 | 274 | 1.67e-11 | 69.3 |
| MS.gene072742.t1 | AT3G49660 | 27.203 | 261 | 164 | 13 | 730 | 981 | 27 | 270 | 4.65e-11 | 65.9 |
Find 219 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTCAATTAGTGATAT+TGG | 0.180525 | 5.3:+3488756 | MS.gene072742:CDS |
| TGGAAAGTTTAAATATATTT+AGG | 0.190587 | 5.3:+3489363 | MS.gene072742:CDS |
| AACATCTTCCTCTGTTGATA+TGG | 0.226062 | 5.3:+3489541 | MS.gene072742:CDS |
| CTACAATCTGAAGTGATTAA+TGG | 0.230123 | 5.3:+3491762 | MS.gene072742:CDS |
| TATCAGATTGGAAATAATTC+AGG | 0.230148 | 5.3:+3488729 | MS.gene072742:CDS |
| GTTCTTAGTATATCTTTATC+TGG | 0.244121 | 5.3:-3492191 | None:intergenic |
| TGTTGGATCCACCTCGTTTC+CGG | 0.261043 | 5.3:+3488824 | MS.gene072742:CDS |
| ATTCCGATTCTGCATCTTCT+TGG | 0.266535 | 5.3:-3491827 | None:intergenic |
| TCCTCTCATTTGCTTGCCTT+TGG | 0.266707 | 5.3:+3494992 | MS.gene072742:CDS |
| AATCGGAAACTTTGCAATCT+TGG | 0.268860 | 5.3:-3489243 | None:intergenic |
| GACGAGAGTGCGAGGGTTAC+TGG | 0.269493 | 5.3:+3489584 | MS.gene072742:CDS |
| ATTTAGGAAAATTGTGGATT+TGG | 0.269624 | 5.3:+3489379 | MS.gene072742:CDS |
| CATTCAGTCGTGCTAGATTT+AGG | 0.275646 | 5.3:-3489284 | None:intergenic |
| CCAAACTTGTGTGAAGTAAT+TGG | 0.283179 | 5.3:-3496304 | None:intergenic |
| CCAATTACTTCACACAAGTT+TGG | 0.299695 | 5.3:+3496304 | MS.gene072742:CDS |
| CTGATAATTCATTGAAGATC+TGG | 0.300298 | 5.3:+3495146 | MS.gene072742:CDS |
| AAAGTGTTACAAATGGTTTA+AGG | 0.300773 | 5.3:+3496445 | MS.gene072742:CDS |
| TCTTTCACATATCGAATTAC+TGG | 0.302636 | 5.3:-3489774 | None:intergenic |
| AGAGAGCATATAACATTTGC+AGG | 0.304868 | 5.3:-3492362 | None:intergenic |
| GGAATTCAATTAGTGATATT+GGG | 0.319812 | 5.3:+3488757 | MS.gene072742:CDS |
| ATACTCAGCAAACCCTGATT+TGG | 0.324942 | 5.3:-3488976 | None:intergenic |
| CAATCTCAGTTCATTTGTAT+TGG | 0.326529 | 5.3:-3492084 | None:intergenic |
| CATTAATCACTTCAGATTGT+AGG | 0.328405 | 5.3:-3491761 | None:intergenic |
| AATTGGTCTGTGACCCAAAA+AGG | 0.335217 | 5.3:+3492221 | MS.gene072742:CDS |
| GTTCATTTGTATTGGAGATT+GGG | 0.336479 | 5.3:-3492076 | None:intergenic |
| ATTTAATGTAAGATGGATAA+AGG | 0.342528 | 5.3:-3489439 | None:intergenic |
| TGAAGTGATTAATGGATTAC+AGG | 0.351762 | 5.3:+3491770 | MS.gene072742:CDS |
| AGTTCATTTGTATTGGAGAT+TGG | 0.355893 | 5.3:-3492077 | None:intergenic |
| AATTCTTCAACTGTTTCATA+TGG | 0.361630 | 5.3:-3488624 | None:intergenic |
| GCTTTAGGAACCTTCTTTGA+TGG | 0.364422 | 5.3:+3492269 | MS.gene072742:CDS |
| TGTTTCAGAAATCTGAACTT+TGG | 0.364662 | 5.3:-3492153 | None:intergenic |
| CAAAGCTTAGCTGTGTTTGC+TGG | 0.367423 | 5.3:+3492516 | MS.gene072742:CDS |
| GAAGTTCAAATGCCTTCAAT+TGG | 0.370322 | 5.3:+3489641 | MS.gene072742:CDS |
| ACATCTCAACAGCAGGATAA+TGG | 0.370679 | 5.3:-3492484 | None:intergenic |
| ACAAAGATGATATCCAAATC+AGG | 0.375965 | 5.3:+3488963 | MS.gene072742:CDS |
| TACTAAGAACTCGCGAGAAT+TGG | 0.379466 | 5.3:+3492204 | MS.gene072742:CDS |
| TGGCAGAATCTTTATCAGAT+TGG | 0.379730 | 5.3:+3488717 | MS.gene072742:CDS |
| GCGGTGATGCGAATCAGAAT+TGG | 0.379858 | 5.3:+3489099 | MS.gene072742:CDS |
| CATAAAAGTAAAGATGCTTT+AGG | 0.380101 | 5.3:+3492254 | MS.gene072742:CDS |
| CGGTGATGCGAATCAGAATT+GGG | 0.380736 | 5.3:+3489100 | MS.gene072742:CDS |
| CTTCCTTAGGATGTTCTGAT+AGG | 0.384102 | 5.3:-3490518 | None:intergenic |
| CTCTAATTGTTCAACCAACT+TGG | 0.385891 | 5.3:-3491901 | None:intergenic |
| ACATCTTCCTCTGTTGATAT+GGG | 0.391461 | 5.3:+3489542 | MS.gene072742:CDS |
| GAAGATTACTTTGCTTCTGC+TGG | 0.394367 | 5.3:+3492401 | MS.gene072742:CDS |
| AAATCTGGCCAGCGCAAATC+AGG | 0.395977 | 5.3:+3489335 | MS.gene072742:CDS |
| CGCAGCTACGTCTAGTGCTT+GGG | 0.397285 | 5.3:+3488797 | MS.gene072742:CDS |
| CCGCAGCTACGTCTAGTGCT+TGG | 0.400322 | 5.3:+3488796 | MS.gene072742:CDS |
| ATCCCTCGTGTATCTAATTC+AGG | 0.401971 | 5.3:+3489737 | MS.gene072742:CDS |
| CCATCATCACGTCCAACAAC+AGG | 0.401981 | 5.3:+3490573 | MS.gene072742:CDS |
| AGAAAATCCTTGGTTTCCTC+TGG | 0.410497 | 5.3:+3491969 | MS.gene072742:CDS |
| ATCAGTCTCTTTACCAGAGA+TGG | 0.417463 | 5.3:-3496338 | None:intergenic |
| GAAATTCTTTGGGCACAATC+AGG | 0.417682 | 5.3:+3494930 | MS.gene072742:CDS |
| TGATGAAAGAATTCAGTTAG+AGG | 0.419881 | 5.3:+3488488 | MS.gene072742:CDS |
| TTGAGAGAATGGTTAAAATC+TGG | 0.420168 | 5.3:+3489320 | MS.gene072742:CDS |
| TTTCAATAGTACCCTGTTGT+TGG | 0.422547 | 5.3:-3490585 | None:intergenic |
| GCTCGCAGCCTAACCCTGTC+TGG | 0.432747 | 5.3:+3495208 | MS.gene072742:CDS |
| GGATCTATTGATCCCATCTC+TGG | 0.434827 | 5.3:+3496325 | MS.gene072742:CDS |
| AATCTGAACTTTGGATCTCA+TGG | 0.436953 | 5.3:-3492144 | None:intergenic |
| TAGTATGTCCAGACAGGGTT+AGG | 0.437776 | 5.3:-3495216 | None:intergenic |
| GAGTAATGCAGTTGAACATT+TGG | 0.442426 | 5.3:+3488881 | MS.gene072742:CDS |
| CCACTTTGCCTGATTTGCGC+TGG | 0.443062 | 5.3:-3489343 | None:intergenic |
| GGTTGAACAATTAGAGTGCT+TGG | 0.444330 | 5.3:+3491908 | MS.gene072742:CDS |
| GGTGGATGACTCACACTCTC+GGG | 0.449991 | 5.3:+3489400 | MS.gene072742:CDS |
| AAACAAATGAAGACTGGTAT+TGG | 0.453637 | 5.3:+3489182 | MS.gene072742:CDS |
| CAATGTCTGATCTTCATCAT+AGG | 0.456778 | 5.3:+3490478 | MS.gene072742:CDS |
| TAATCTTGTGATCCAATTGA+AGG | 0.460693 | 5.3:-3489653 | None:intergenic |
| ATCAGATTGGAAATAATTCA+GGG | 0.462085 | 5.3:+3488730 | MS.gene072742:CDS |
| GTTGGACGTGATGATGGTTC+AGG | 0.462126 | 5.3:-3490567 | None:intergenic |
| GTGGGTTTGTCTGTTGCTGA+TGG | 0.464615 | 5.3:+3495890 | MS.gene072742:CDS |
| AAATATATTTAGGAAAATTG+TGG | 0.466422 | 5.3:+3489373 | MS.gene072742:CDS |
| TGATAATTCATTGAAGATCT+GGG | 0.466607 | 5.3:+3495147 | MS.gene072742:CDS |
| TCAGCTATGGGATGCTAGTA+CGG | 0.467085 | 5.3:+3493778 | MS.gene072742:intron |
| ATTGGAAATAATTCAGGGAA+TGG | 0.468351 | 5.3:+3488735 | MS.gene072742:CDS |
| CCTGTTGTTGGACGTGATGA+TGG | 0.468695 | 5.3:-3490573 | None:intergenic |
| CTCAATAAAACCTCTTCGGT+TGG | 0.468709 | 5.3:+3495172 | MS.gene072742:CDS |
| TATGCTCTCTAAGCTTTGAC+CGG | 0.469053 | 5.3:+3492375 | MS.gene072742:CDS |
| GCATGGCTTAAGAAAATCCT+TGG | 0.470022 | 5.3:+3491959 | MS.gene072742:CDS |
| GTCTGGACATACTAATGAAA+AGG | 0.473081 | 5.3:+3495225 | MS.gene072742:CDS |
| TCATGATTATTAGCAGTCTC+AGG | 0.473314 | 5.3:-3489620 | None:intergenic |
| TTTCATTAGTATGTCCAGAC+AGG | 0.474015 | 5.3:-3495222 | None:intergenic |
| GTAATTCGATATGTGAAAGA+TGG | 0.474195 | 5.3:+3489777 | MS.gene072742:CDS |
| AGTTTGTTTCAAGTGTGTGC+TGG | 0.474338 | 5.3:+3496374 | MS.gene072742:CDS |
| TTCTTAGTATATCTTTATCT+GGG | 0.477468 | 5.3:-3492190 | None:intergenic |
| AGACAAAATCCAGCTTCCTT+AGG | 0.483629 | 5.3:-3490531 | None:intergenic |
| ATGTATAAAAGTGTTACAAA+TGG | 0.485163 | 5.3:+3496438 | MS.gene072742:CDS |
| TTTGGCGGCTGCGGAAAGTA+AGG | 0.486066 | 5.3:+3488899 | MS.gene072742:CDS |
| AGACCAAGAAGATGCAGAAT+CGG | 0.486392 | 5.3:+3491824 | MS.gene072742:CDS |
| GGTAGCAATTTAATGTAAGA+TGG | 0.487289 | 5.3:-3489446 | None:intergenic |
| AATCCTTGGTTTCCTCTGGC+TGG | 0.487954 | 5.3:+3491973 | MS.gene072742:CDS |
| TTGGAAATAATTCAGGGAAT+GGG | 0.490364 | 5.3:+3488736 | MS.gene072742:CDS |
| AAAACAAACGGCAGGTAAAA+GGG | 0.490416 | 5.3:+3489505 | MS.gene072742:CDS |
| TAGAAGTCCCTGGTGTGTAT+TGG | 0.493208 | 5.3:+3495057 | MS.gene072742:CDS |
| GGATGTTCTGATAGGAAAGC+TGG | 0.493573 | 5.3:-3490510 | None:intergenic |
| CAAACCAGGTCATGTACATT+GGG | 0.496767 | 5.3:+3489471 | MS.gene072742:CDS |
| GGATCTCAATAAAACCTCTT+CGG | 0.497863 | 5.3:+3495168 | MS.gene072742:CDS |
| AGTTGAACATTTGGCGGCTG+CGG | 0.498441 | 5.3:+3488890 | MS.gene072742:CDS |
| TCAGAACATCCTAAGGAAGC+TGG | 0.499024 | 5.3:+3490522 | MS.gene072742:CDS |
| TGGTGGATGACTCACACTCT+CGG | 0.500502 | 5.3:+3489399 | MS.gene072742:CDS |
| GTGAACATGAAAAGAGGGCT+TGG | 0.501727 | 5.3:+3493822 | MS.gene072742:CDS |
| GAGCAAAATCAGACAAAGGC+AGG | 0.503141 | 5.3:+3489077 | MS.gene072742:CDS |
| CTTCTTGCTGCCAATTCAAG+TGG | 0.504977 | 5.3:+3496415 | MS.gene072742:CDS |
| GATATTGGGTTGATTAGTAG+TGG | 0.505458 | 5.3:+3488771 | MS.gene072742:CDS |
| TTCATTTGTATTGGAGATTG+GGG | 0.507234 | 5.3:-3492075 | None:intergenic |
| AAGATTACTTTGCTTCTGCT+GGG | 0.507710 | 5.3:+3492402 | MS.gene072742:CDS |
| TAGGAAAATTGTGGATTTGG+TGG | 0.511869 | 5.3:+3489382 | MS.gene072742:CDS |
| ACTGCAGCATCGCTGTGAAT+CGG | 0.512278 | 5.3:-3489260 | None:intergenic |
| ATGTACATGACCTGGTTTGA+TGG | 0.512767 | 5.3:-3489467 | None:intergenic |
| ACGAGAGTGCGAGGGTTACT+GGG | 0.515885 | 5.3:+3489585 | MS.gene072742:CDS |
| GTCGTAAAATCCCAATATGA+TGG | 0.518250 | 5.3:+3488549 | MS.gene072742:CDS |
| TCAAACCAGGTCATGTACAT+TGG | 0.518776 | 5.3:+3489470 | MS.gene072742:CDS |
| CGGGTCTACACACCTCGAAA+AGG | 0.518792 | 5.3:-3489871 | None:intergenic |
| CATGGGAAGCGACTTATAGT+AGG | 0.520691 | 5.3:-3496281 | None:intergenic |
| GATATTGTGCAACCTCCCTC+AGG | 0.523069 | 5.3:-3489821 | None:intergenic |
| GGTTAGGCTGCGAGCACTAG+TGG | 0.523379 | 5.3:-3495200 | None:intergenic |
| AATTCAGTTAGAGGCTGTTG+AGG | 0.529039 | 5.3:+3488497 | MS.gene072742:CDS |
| TAATTGTTCAACCAACTTGG+AGG | 0.530716 | 5.3:-3491898 | None:intergenic |
| TTACAACAAGCTTGAAGTGC+GGG | 0.531222 | 5.3:+3492310 | MS.gene072742:CDS |
| GTGAAAGATGGGAAAATAAG+TGG | 0.531333 | 5.3:+3489789 | MS.gene072742:CDS |
| AGAGGAAGATGTTACTTGCT+CGG | 0.532696 | 5.3:-3489531 | None:intergenic |
| CTGTTTGACATCTCAACAGC+AGG | 0.533413 | 5.3:-3492491 | None:intergenic |
| CTCATCAAAAGAGAAGAAGC+AGG | 0.539036 | 5.3:+3491869 | MS.gene072742:CDS |
| AATACAGTGAACATGAAAAG+AGG | 0.539565 | 5.3:+3493816 | MS.gene072742:CDS |
| CAGCTATGGGATGCTAGTAC+GGG | 0.540078 | 5.3:+3493779 | MS.gene072742:intron |
| TAATGCAGTTGAACATTTGG+CGG | 0.540996 | 5.3:+3488884 | MS.gene072742:CDS |
| GTGATGTTCATCGAGGAATA+CGG | 0.544130 | 5.3:+3488940 | MS.gene072742:CDS |
| AGATTATCGTAACAGATATG+AGG | 0.544583 | 5.3:+3489670 | MS.gene072742:CDS |
| TCTAGTGCTTGGGAGGATGT+TGG | 0.545873 | 5.3:+3488807 | MS.gene072742:CDS |
| ATCTTTATCTGGGTGATCTG+TGG | 0.548330 | 5.3:-3492180 | None:intergenic |
| TAATTCGATATGTGAAAGAT+GGG | 0.552192 | 5.3:+3489778 | MS.gene072742:CDS |
| TTTCCTATCAGAACATCCTA+AGG | 0.555337 | 5.3:+3490515 | MS.gene072742:CDS |
| GTTTCAAGTGTGTGCTGGAG+AGG | 0.558709 | 5.3:+3496379 | MS.gene072742:CDS |
| TCAGTCTCTTTACCAGAGAT+GGG | 0.559728 | 5.3:-3496337 | None:intergenic |
| TCATCAAACATCTACTGCCT+CGG | 0.561737 | 5.3:+3489842 | MS.gene072742:CDS |
| TTCGCAATCTTAGAAGTCCC+TGG | 0.562968 | 5.3:+3495047 | MS.gene072742:CDS |
| AATCAGAAACAAATGAAGAC+TGG | 0.563404 | 5.3:+3489176 | MS.gene072742:CDS |
| ACATAAACGCGATCAGAAGC+TGG | 0.563636 | 5.3:-3489044 | None:intergenic |
| CAAAGATGATATCCAAATCA+GGG | 0.570823 | 5.3:+3488964 | MS.gene072742:CDS |
| AAAAGTAAGCACTTTCAAGA+TGG | 0.572294 | 5.3:-3492121 | None:intergenic |
| TTGGAGATTGGGGACACTGT+GGG | 0.573052 | 5.3:-3492065 | None:intergenic |
| AAGGAGGGTGTAGGACCCGC+AGG | 0.573680 | 5.3:+3488918 | MS.gene072742:CDS |
| AAGTGGTATGCGAGTCCTGA+GGG | 0.573844 | 5.3:+3489806 | MS.gene072742:CDS |
| AGTAAGGGTGTTGTACGTAA+AGG | 0.574103 | 5.3:+3489020 | MS.gene072742:CDS |
| CTCAAGTTCAACATAAACAT+TGG | 0.574254 | 5.3:+3488697 | MS.gene072742:CDS |
| CATCTTCCTCTGTTGATATG+GGG | 0.576607 | 5.3:+3489543 | MS.gene072742:CDS |
| CTTGCACAAACCATCAAAGA+AGG | 0.577758 | 5.3:-3492279 | None:intergenic |
| CAAGCACTAGACGTAGCTGC+GGG | 0.585754 | 5.3:-3488795 | None:intergenic |
| AGTACAATCATCACTTCCAC+TGG | 0.586568 | 5.3:-3493882 | None:intergenic |
| AATCAGAATTGGGGTAAGAT+CGG | 0.586685 | 5.3:+3489110 | MS.gene072742:CDS |
| GAAGAGGCAGAGAGGAGGCA+TGG | 0.588049 | 5.3:+3491942 | MS.gene072742:CDS |
| AATTGGGGTAAGATCGGCGT+TGG | 0.590002 | 5.3:+3489116 | MS.gene072742:CDS |
| AGTCCCTGGTGTGTATTGGC+TGG | 0.591751 | 5.3:+3495061 | MS.gene072742:CDS |
| TGAGTAATTCGCAGATCCAA+AGG | 0.594338 | 5.3:-3495008 | None:intergenic |
| CCTCGATGAACATCACCTGC+GGG | 0.594373 | 5.3:-3488933 | None:intergenic |
| ATACAGTGAACATGAAAAGA+GGG | 0.594379 | 5.3:+3493817 | MS.gene072742:CDS |
| ACGGTGTAACATTGAGAGAA+TGG | 0.595622 | 5.3:+3489309 | MS.gene072742:CDS |
| TTCATTAGTATGTCCAGACA+GGG | 0.595786 | 5.3:-3495221 | None:intergenic |
| ATATTGGGTTGATTAGTAGT+GGG | 0.599244 | 5.3:+3488772 | MS.gene072742:CDS |
| TTTCAAGTGTGTGCTGGAGA+GGG | 0.601436 | 5.3:+3496380 | MS.gene072742:CDS |
| GCAGGGTGATGCCTCCAAGT+TGG | 0.602461 | 5.3:+3491887 | MS.gene072742:CDS |
| CAGATATAGAAGAGGCAGAG+AGG | 0.604924 | 5.3:+3491934 | MS.gene072742:CDS |
| ATTACAGGAGTTGTGTAATG+AGG | 0.606394 | 5.3:+3491785 | MS.gene072742:CDS |
| GGCGGCTGCGGAAAGTAAGG+AGG | 0.607941 | 5.3:+3488902 | MS.gene072742:CDS |
| GCTAGAAAATCGCATAGTGA+TGG | 0.608608 | 5.3:+3488855 | MS.gene072742:CDS |
| CTTGGAATCAGATATAGAAG+AGG | 0.610271 | 5.3:+3491926 | MS.gene072742:CDS |
| ATGCTCTCTAAGCTTTGACC+GGG | 0.612774 | 5.3:+3492376 | MS.gene072742:CDS |
| AGCTACGTCTAGTGCTTGGG+AGG | 0.615576 | 5.3:+3488800 | MS.gene072742:CDS |
| AAGCAAAGTAATCTTCATCC+CGG | 0.620471 | 5.3:-3492394 | None:intergenic |
| ACTTTGCAATCTTGGAACCA+CGG | 0.621269 | 5.3:-3489235 | None:intergenic |
| AGACTACGACGGTGTAGTGA+AGG | 0.621641 | 5.3:+3492571 | MS.gene072742:CDS |
| GAGATTGGGGACACTGTGGG+CGG | 0.622277 | 5.3:-3492062 | None:intergenic |
| CCAGCGCAAATCAGGCAAAG+TGG | 0.623535 | 5.3:+3489343 | MS.gene072742:CDS |
| TTGTGTGAAGTAATTGGCAT+GGG | 0.625244 | 5.3:-3496298 | None:intergenic |
| TCCAAAGGCAAGCAAATGAG+AGG | 0.625566 | 5.3:-3494993 | None:intergenic |
| GCGGAAAGTAAGGAGGGTGT+AGG | 0.626048 | 5.3:+3488909 | MS.gene072742:CDS |
| GTCTACACACCTCGAAAAGG+AGG | 0.626294 | 5.3:-3489868 | None:intergenic |
| GTGGATGACTCACACTCTCG+GGG | 0.627042 | 5.3:+3489401 | MS.gene072742:CDS |
| ATGGCCAGCCAATACACACC+AGG | 0.627800 | 5.3:-3495065 | None:intergenic |
| AAAATTTGACGAGAGTGCGA+GGG | 0.629892 | 5.3:+3489577 | MS.gene072742:CDS |
| TAGAGAGCAAAATCAGACAA+AGG | 0.631176 | 5.3:+3489073 | MS.gene072742:CDS |
| CCAAGCACTAGACGTAGCTG+CGG | 0.631837 | 5.3:-3488796 | None:intergenic |
| CACTTGAAACAAACTGACCA+TGG | 0.631982 | 5.3:-3496366 | None:intergenic |
| AGCTAATAACTCCGGAAACG+AGG | 0.632584 | 5.3:-3488835 | None:intergenic |
| TCCTCGATGAACATCACCTG+CGG | 0.634907 | 5.3:-3488934 | None:intergenic |
| CTTGTGTGAAGTAATTGGCA+TGG | 0.647108 | 5.3:-3496299 | None:intergenic |
| ATATAGAAGAGGCAGAGAGG+AGG | 0.647655 | 5.3:+3491937 | MS.gene072742:CDS |
| ATTGGAGATTGGGGACACTG+TGG | 0.648633 | 5.3:-3492066 | None:intergenic |
| TCATCAAAAGAGAAGAAGCA+GGG | 0.652591 | 5.3:+3491870 | MS.gene072742:CDS |
| CATAGCTTACAGCTTTACGA+TGG | 0.656922 | 5.3:-3495084 | None:intergenic |
| GCGGCTGCGGAAAGTAAGGA+GGG | 0.659078 | 5.3:+3488903 | MS.gene072742:CDS |
| TAAATTGCTACCATCAAACC+AGG | 0.660402 | 5.3:+3489457 | MS.gene072742:CDS |
| CTTGGACCCCATATCAACAG+AGG | 0.661094 | 5.3:-3489549 | None:intergenic |
| CTGCCAGCCAGAGGAAACCA+AGG | 0.661718 | 5.3:-3491976 | None:intergenic |
| TGCCCTACAAAATTTGCCAG+TGG | 0.662507 | 5.3:+3493866 | MS.gene072742:CDS |
| CATCATCACGTCCAACAACA+GGG | 0.666527 | 5.3:+3490574 | MS.gene072742:CDS |
| AGTGGATGAACCAACCGAAG+AGG | 0.670752 | 5.3:-3495182 | None:intergenic |
| TACACCGTCGTAGTCTGTAG+AGG | 0.672028 | 5.3:-3492564 | None:intergenic |
| TACAACAAGCTTGAAGTGCG+GGG | 0.673879 | 5.3:+3492311 | MS.gene072742:CDS |
| GTAACCCAATGTACATGACC+TGG | 0.681232 | 5.3:-3489475 | None:intergenic |
| GTTACAACAAGCTTGAAGTG+CGG | 0.682697 | 5.3:+3492309 | MS.gene072742:CDS |
| GCTGATGGATATATTGCATG+CGG | 0.691894 | 5.3:+3495905 | MS.gene072742:CDS |
| GTAATTGTTCTGCCAGCCAG+AGG | 0.692765 | 5.3:-3491985 | None:intergenic |
| GGTGATGCGAATCAGAATTG+GGG | 0.694044 | 5.3:+3489101 | MS.gene072742:CDS |
| ATGATTGTACTGTCAAGCTG+TGG | 0.694220 | 5.3:+3493894 | MS.gene072742:CDS |
| CAAAATCAGACAAAGGCAGG+CGG | 0.694575 | 5.3:+3489080 | MS.gene072742:CDS |
| TAATAACTCCGGAAACGAGG+TGG | 0.696527 | 5.3:-3488832 | None:intergenic |
| TGTTCTGATAGGAAAGCTGG+AGG | 0.696572 | 5.3:-3490507 | None:intergenic |
| TGACCTGAATTAGATACACG+AGG | 0.698186 | 5.3:-3489740 | None:intergenic |
| GACCTGAATTAGATACACGA+GGG | 0.702403 | 5.3:-3489739 | None:intergenic |
| TGGTATGCGAGTCCTGAGGG+AGG | 0.704127 | 5.3:+3489809 | MS.gene072742:CDS |
| TAAGTGGTATGCGAGTCCTG+AGG | 0.705242 | 5.3:+3489805 | MS.gene072742:CDS |
| TGGCCAGCCAATACACACCA+GGG | 0.709578 | 5.3:-3495064 | None:intergenic |
| TCTAGCACGACTGAATGTGA+CGG | 0.713007 | 5.3:+3489290 | MS.gene072742:CDS |
| CCCGCAGGTGATGTTCATCG+AGG | 0.729473 | 5.3:+3488933 | MS.gene072742:CDS |
| CCTCGAAAAGGAGGACACCG+AGG | 0.731822 | 5.3:-3489859 | None:intergenic |
| TCTAATGTATCAGTGAACCG+TGG | 0.736096 | 5.3:+3489218 | MS.gene072742:CDS |
| CTTGCCTCTACAGACTACGA+CGG | 0.736845 | 5.3:+3492560 | MS.gene072742:CDS |
| CAAGCTGTGGAGCATCAGTG+AGG | 0.737737 | 5.3:+3493907 | MS.gene072742:CDS |
| AAAGAGACTGATGATGACCA+TGG | 0.778100 | 5.3:+3496349 | MS.gene072742:CDS |
| ATGCGGTTCAGAATCAAACG+AGG | 0.781275 | 5.3:+3495922 | MS.gene072742:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3488471 | 3496465 | 3488471 | ID=MS.gene072742 |
| chr5.3 | mRNA | 3488471 | 3496465 | 3488471 | ID=MS.gene072742.t1;Parent=MS.gene072742 |
| chr5.3 | exon | 3488471 | 3489880 | 3488471 | ID=MS.gene072742.t1.exon1;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3488471 | 3489880 | 3488471 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3490438 | 3490595 | 3490438 | ID=MS.gene072742.t1.exon2;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3490438 | 3490595 | 3490438 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3491755 | 3492592 | 3491755 | ID=MS.gene072742.t1.exon3;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3491755 | 3492592 | 3491755 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3493782 | 3493928 | 3493782 | ID=MS.gene072742.t1.exon4;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3493782 | 3493928 | 3493782 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3494929 | 3495246 | 3494929 | ID=MS.gene072742.t1.exon5;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3494929 | 3495246 | 3494929 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3495884 | 3495943 | 3495884 | ID=MS.gene072742.t1.exon6;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3495884 | 3495943 | 3495884 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| chr5.3 | exon | 3496274 | 3496465 | 3496274 | ID=MS.gene072742.t1.exon7;Parent=MS.gene072742.t1 |
| chr5.3 | CDS | 3496274 | 3496465 | 3496274 | ID=cds.MS.gene072742.t1;Parent=MS.gene072742.t1 |
| Gene Sequence |
| Protein sequence |
