Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072970.t1 | XP_003603478.1 | 96.3 | 267 | 10 | 0 | 1 | 267 | 1 | 267 | 2.10E-48 | 203 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072970.t1 | G7JBR3 | 96.3 | 267 | 10 | 0 | 1 | 267 | 1 | 267 | 1.5e-48 | 203.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene072970 | 0.805816 | 1.11E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene072970 | 0.804476 | 2.12E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene072970 | -0.819446 | 1.16E-52 | -1.69E-46 |
| MS.gene04991 | MS.gene072970 | -0.816832 | 4.51E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene072970 | 0.804337 | 2.27E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene072970 | 0.81211 | 5.00E-51 | -1.69E-46 |
| MS.gene051987 | MS.gene072970 | 0.806173 | 9.35E-50 | -1.69E-46 |
| MS.gene053189 | MS.gene072970 | 0.811531 | 6.68E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene072970 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene053340 | MS.gene072970 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene072970 | 0.822822 | 1.93E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene072970 | 0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene055063 | MS.gene072970 | -0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene056849 | MS.gene072970 | 0.86189 | 7.46E-64 | -1.69E-46 |
| MS.gene056975 | MS.gene072970 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene057451 | MS.gene072970 | -0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene057452 | MS.gene072970 | -0.830847 | 2.33E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene072970 | 0.823945 | 1.05E-53 | -1.69E-46 |
| MS.gene058074 | MS.gene072970 | 0.800234 | 1.59E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene072970 | -0.862384 | 5.26E-64 | -1.69E-46 |
| MS.gene060297 | MS.gene072970 | 0.82293 | 1.82E-53 | -1.69E-46 |
| MS.gene060852 | MS.gene072970 | 0.800218 | 1.60E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene072970 | 0.812045 | 5.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072970.t1 | MTR_3g108100 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 614 |
| MS.gene072970.t1 | MTR_3g108090 | 86.435 | 317 | 32 | 2 | 1 | 316 | 1 | 307 | 1.95e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072970.t1 | AT2G25670 | 58.769 | 325 | 118 | 8 | 1 | 316 | 1 | 318 | 2.29e-43 | 151 |
| MS.gene072970.t1 | AT2G25670 | 58.769 | 325 | 118 | 8 | 1 | 316 | 1 | 318 | 2.29e-43 | 151 |
| MS.gene072970.t1 | AT4G32610 | 55.828 | 326 | 123 | 8 | 1 | 316 | 1 | 315 | 3.08e-34 | 127 |
Find 81 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTCTTGGCATTCT+TGG | 0.196635 | 3.4:+93900376 | None:intergenic |
| AATCGGAATCGCAGGCGTTT+TGG | 0.237603 | 3.4:-93902678 | MS.gene072970:CDS |
| CGATTCCGATTTGCTCGATT+TGG | 0.247149 | 3.4:+93902696 | None:intergenic |
| TTCACAGCATGCTCTGGTTC+TGG | 0.268354 | 3.4:+93900976 | None:intergenic |
| CTTCTTGGCATTCTTGGACT+CGG | 0.319126 | 3.4:+93900382 | None:intergenic |
| GCTTGCTGCAGCAAAGAAAA+AGG | 0.330235 | 3.4:-93900117 | MS.gene072970:CDS |
| ATGCTCCGGTTTGTCCTCAC+TGG | 0.348989 | 3.4:+93902555 | None:intergenic |
| GCACTGGTTGTTGGTTATAA+TGG | 0.350920 | 3.4:+93900087 | None:intergenic |
| GGCTACAGGCACCGAAAATT+CGG | 0.366791 | 3.4:-93900273 | MS.gene072970:CDS |
| TTCTTGGCATTCTTGGACTC+GGG | 0.367598 | 3.4:+93900383 | None:intergenic |
| GAAGAAATCAAGTAAAGAAA+TGG | 0.370591 | 3.4:-93900189 | MS.gene072970:CDS |
| AGTTGTCGCTCTGCCTCCTT+TGG | 0.375124 | 3.4:+93900910 | None:intergenic |
| GACAAGGACAAGAAGAATAA+AGG | 0.383986 | 3.4:-93902724 | MS.gene072970:CDS |
| AACAAACAATGGGACTGATA+TGG | 0.397312 | 3.4:-93900294 | MS.gene072970:CDS |
| AGAGCGACAACTCTCCAAAA+AGG | 0.404514 | 3.4:-93900899 | MS.gene072970:CDS |
| GTTTGTCCTCACTGGGTTGA+GGG | 0.408964 | 3.4:+93902563 | None:intergenic |
| GGTTTGTCCTCACTGGGTTG+AGG | 0.417767 | 3.4:+93902562 | None:intergenic |
| TCAGTCTTCACAGCATGCTC+TGG | 0.423791 | 3.4:+93900970 | None:intergenic |
| ATTAGATTCTTTCACCTCCT+TGG | 0.431741 | 3.4:+93900337 | None:intergenic |
| GGTGTTGAAGGGGATGTTGA+TGG | 0.444637 | 3.4:-93900425 | MS.gene072970:CDS |
| TCCTTTACCGCACTGGTTGT+TGG | 0.445908 | 3.4:+93900078 | None:intergenic |
| ATTGTTTGTTTCTGAGCTGT+TGG | 0.446374 | 3.4:+93900307 | None:intergenic |
| CAAATCGAGCAAATCGGAAT+CGG | 0.447655 | 3.4:-93902695 | MS.gene072970:CDS |
| TTGTTTGTTTCTGAGCTGTT+GGG | 0.461577 | 3.4:+93900308 | None:intergenic |
| CGCCGTTGAATGCAACCTCA+TGG | 0.467633 | 3.4:-93902648 | MS.gene072970:CDS |
| ACCAACAACCAGTGCGGTAA+AGG | 0.472444 | 3.4:-93900079 | None:intergenic |
| CAGGATAAGAAAGGTGTTGA+AGG | 0.477670 | 3.4:-93900437 | MS.gene072970:CDS |
| TCTGCCTCCTTTGGCACCAC+AGG | 0.481597 | 3.4:+93900919 | None:intergenic |
| TGGTGGAAGCCGAAGGGATG+AGG | 0.482889 | 3.4:-93902815 | MS.gene072970:CDS |
| CTGCTCAAGAAGCTGCTGCT+AGG | 0.485825 | 3.4:-93900148 | MS.gene072970:CDS |
| TCAGCGTGCTTCTTAACCTC+AGG | 0.486662 | 3.4:+93900946 | None:intergenic |
| GCAAGGTTCCTTTACCGCAC+TGG | 0.498291 | 3.4:+93900071 | None:intergenic |
| CCAACGAACCCTCATCCCTT+CGG | 0.499437 | 3.4:+93902806 | None:intergenic |
| TGCTCCGGTTTGTCCTCACT+GGG | 0.505009 | 3.4:+93902556 | None:intergenic |
| TTCTTCCAAATCGAGCAAAT+CGG | 0.505042 | 3.4:-93902701 | MS.gene072970:CDS |
| AGATGACGGTGATGAAGAGG+AGG | 0.506605 | 3.4:-93901016 | MS.gene072970:CDS |
| TCAACCCAGTGAGGACAAAC+CGG | 0.510598 | 3.4:-93902560 | MS.gene072970:CDS |
| ACTCAGAAAGAAAGTAATGA+TGG | 0.515814 | 3.4:-93900820 | MS.gene072970:CDS |
| GCCCATGAGGTTGCATTCAA+CGG | 0.525909 | 3.4:+93902646 | None:intergenic |
| AAGGAGGTGAAAGAATCTAA+TGG | 0.527355 | 3.4:-93900335 | MS.gene072970:CDS |
| AAAGAAGGATAAAGCTTCCA+AGG | 0.528000 | 3.4:-93900354 | MS.gene072970:CDS |
| AATTTGTGATTAACAATGGT+TGG | 0.528702 | 3.4:-93902838 | None:intergenic |
| CAAATCGGAATCGGAATCGC+AGG | 0.529120 | 3.4:-93902686 | MS.gene072970:CDS |
| TGTATTAGCAGGAGTACCTC+AGG | 0.534708 | 3.4:-93900456 | MS.gene072970:intron |
| TTGTTTCTGAGCTGTTGGGA+TGG | 0.538147 | 3.4:+93900312 | None:intergenic |
| GGTTGAGGGTTAGAAAATTG+AGG | 0.546792 | 3.4:+93902577 | None:intergenic |
| ACAGCTCAGAAACAAACAAT+GGG | 0.547328 | 3.4:-93900304 | MS.gene072970:CDS |
| TGATTAACAATGGTTGGTGG+TGG | 0.548951 | 3.4:-93902832 | None:intergenic |
| GCCGTTGAATGCAACCTCAT+GGG | 0.549582 | 3.4:-93902647 | MS.gene072970:CDS |
| GGTGGAAGCCGAAGGGATGA+GGG | 0.549738 | 3.4:-93902814 | MS.gene072970:CDS |
| TTTAGATGACGGTGATGAAG+AGG | 0.551847 | 3.4:-93901019 | MS.gene072970:CDS |
| GAGCAAACCTCAAAATGCTC+CGG | 0.553859 | 3.4:+93902541 | None:intergenic |
| GAGGTTGCATTCAACGGCGC+CGG | 0.563482 | 3.4:+93902652 | None:intergenic |
| CCGAAGGGATGAGGGTTCGT+TGG | 0.566127 | 3.4:-93902806 | MS.gene072970:CDS |
| GGAGTACCTCAGGATAAGAA+AGG | 0.568562 | 3.4:-93900446 | MS.gene072970:CDS |
| AAAGGAACTTGAAGAGCTTG+AGG | 0.570478 | 3.4:-93900866 | MS.gene072970:CDS |
| AAGCTGCTGCTAGGAATGCA+AGG | 0.570860 | 3.4:-93900139 | MS.gene072970:CDS |
| AATGGGACTGATATGGCTAC+AGG | 0.571661 | 3.4:-93900287 | MS.gene072970:CDS |
| TCAACACCTTTCTTATCCTG+AGG | 0.575733 | 3.4:+93900440 | None:intergenic |
| TGAAGTTCCTGTGGTGCCAA+AGG | 0.576188 | 3.4:-93900926 | MS.gene072970:CDS |
| AGGATAAGAAAGGTGTTGAA+GGG | 0.576801 | 3.4:-93900436 | MS.gene072970:CDS |
| TTGTGATTAACAATGGTTGG+TGG | 0.584390 | 3.4:-93902835 | None:intergenic |
| AGAAAATTGAGGCGGTGCGG+TGG | 0.589498 | 3.4:+93902588 | None:intergenic |
| TTAACAGGATACTGAGAGCG+AGG | 0.605757 | 3.4:-93901049 | MS.gene072970:intron |
| TGGTTGGTGGTGGAAGCCGA+AGG | 0.610857 | 3.4:-93902822 | MS.gene072970:CDS |
| AGGCACCGAAAATTCGGAGG+AGG | 0.613787 | 3.4:-93900267 | MS.gene072970:CDS |
| AGTTCCTGTGGTGCCAAAGG+AGG | 0.616505 | 3.4:-93900923 | MS.gene072970:CDS |
| AACAGCTCAGAAACAAACAA+TGG | 0.618141 | 3.4:-93900305 | MS.gene072970:CDS |
| GGATAAGAAAGGTGTTGAAG+GGG | 0.623648 | 3.4:-93900435 | MS.gene072970:CDS |
| TTCTAACCCTCAACCCAGTG+AGG | 0.662556 | 3.4:-93902569 | MS.gene072970:CDS |
| GTCATCAACATCAGCCCATG+AGG | 0.663150 | 3.4:+93902633 | None:intergenic |
| GAAGCACGCTGAAGTTCCTG+TGG | 0.664946 | 3.4:-93900935 | MS.gene072970:CDS |
| CAAGCTCAAGATGAGTCGCA+AGG | 0.671870 | 3.4:-93900796 | MS.gene072970:intron |
| TGCTGTGAAGACTGAACCTG+AGG | 0.675373 | 3.4:-93900962 | MS.gene072970:CDS |
| TACAGGCACCGAAAATTCGG+AGG | 0.676468 | 3.4:-93900270 | MS.gene072970:CDS |
| GTTAGAAAATTGAGGCGGTG+CGG | 0.678769 | 3.4:+93902585 | None:intergenic |
| GGTTGGTGGTGGAAGCCGAA+GGG | 0.685517 | 3.4:-93902821 | MS.gene072970:CDS |
| GAAGAAGAAGAAATCAGACA+AGG | 0.694695 | 3.4:-93902740 | MS.gene072970:CDS |
| TGAGGGTTAGAAAATTGAGG+CGG | 0.709594 | 3.4:+93902580 | None:intergenic |
| GAAGGATAAAGCTTCCAAGG+AGG | 0.726948 | 3.4:-93900351 | MS.gene072970:CDS |
| ATTATAACCAACAACCAGTG+CGG | 0.740729 | 3.4:-93900085 | MS.gene072970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTTAAATATAAGAAAAT+AGG | + | chr3.4:93901719-93901738 | None:intergenic | 10.0% |
| !!! | ATTTTAAATCTGCTAATATA+TGG | + | chr3.4:93901250-93901269 | None:intergenic | 15.0% |
| !! | GTCTTATGATATTTATGTTT+AGG | - | chr3.4:93901386-93901405 | MS.gene072970:intron | 20.0% |
| !! | TGTAAAATAGAAGAAATGTT+TGG | + | chr3.4:93901089-93901108 | None:intergenic | 20.0% |
| !! | TTTGTCATAAAACCTATATT+TGG | - | chr3.4:93901152-93901171 | MS.gene072970:intron | 20.0% |
| !!! | ATAGGTTTTATGACAAAAAT+AGG | + | chr3.4:93901149-93901168 | None:intergenic | 20.0% |
| !!! | ATTTTCTGTAATTTGGTATT+TGG | - | chr3.4:93901645-93901664 | MS.gene072970:intron | 20.0% |
| ! | AACGTTACATCATATCATAA+TGG | - | chr3.4:93900734-93900753 | MS.gene072970:intron | 25.0% |
| ! | AAGTTACTATTACCATTCAA+AGG | + | chr3.4:93901273-93901292 | None:intergenic | 25.0% |
| ! | AATTGCAAAATTGTATTAGC+AGG | - | chr3.4:93902438-93902457 | MS.gene072970:intron | 25.0% |
| ! | ACACTAATTTGAACAGAAAT+AGG | + | chr3.4:93901680-93901699 | None:intergenic | 25.0% |
| ! | ACGTTACATCATATCATAAT+GGG | - | chr3.4:93900735-93900754 | MS.gene072970:intron | 25.0% |
| ! | CTCTATATTACATTATTTGC+AGG | - | chr3.4:93902145-93902164 | MS.gene072970:intron | 25.0% |
| ! | GAAGAAATCAAGTAAAGAAA+TGG | - | chr3.4:93902716-93902735 | MS.gene072970:CDS | 25.0% |
| ! | TAATAGCAGAATTGTGTAAT+AGG | - | chr3.4:93901412-93901431 | MS.gene072970:intron | 25.0% |
| ! | TTGAATGGTAATAGTAACTT+AGG | - | chr3.4:93901273-93901292 | MS.gene072970:intron | 25.0% |
| ! | TTGACATATTCTTTGTGTAT+TGG | - | chr3.4:93900522-93900541 | MS.gene072970:intron | 25.0% |
| ! | TTTATACCTTTCTGTTTGTT+TGG | - | chr3.4:93900418-93900437 | MS.gene072970:CDS | 25.0% |
| !! | CAGATTTAAAATCCTTTGAA+TGG | - | chr3.4:93901258-93901277 | MS.gene072970:intron | 25.0% |
| !! | TTCAATTGCTTTATTGTGTT+AGG | - | chr3.4:93900442-93900461 | MS.gene072970:CDS | 25.0% |
| !! | TTGCTGTATTTTCTGTAATT+TGG | - | chr3.4:93901638-93901657 | MS.gene072970:intron | 25.0% |
| AAACTGAAACGTATCAAATC+TGG | + | chr3.4:93901837-93901856 | None:intergenic | 30.0% | |
| ACTCAGAAAGAAAGTAATGA+TGG | - | chr3.4:93902085-93902104 | MS.gene072970:intron | 30.0% | |
| ACTTAATTTCATAAACTCCC+AGG | + | chr3.4:93900711-93900730 | None:intergenic | 30.0% | |
| ATATGTAGTACAATCACTTG+AGG | - | chr3.4:93902390-93902409 | MS.gene072970:intron | 30.0% | |
| CAAAAAGGAAAGGAAGAAAA+AGG | - | chr3.4:93902021-93902040 | MS.gene072970:intron | 30.0% | |
| CTGTCGTAACTATGTAATAA+CGG | + | chr3.4:93900820-93900839 | None:intergenic | 30.0% | |
| CTTTATTGTGTTAGGAAACA+TGG | - | chr3.4:93900450-93900469 | MS.gene072970:intron | 30.0% | |
| GAAAGGAATAATAGTGATTG+TGG | - | chr3.4:93901496-93901515 | MS.gene072970:intron | 30.0% | |
| GAAATTCAAAAAGTTACGAC+AGG | - | chr3.4:93900757-93900776 | MS.gene072970:intron | 30.0% | |
| GGAAAATAGGAAATAAATGG+AGG | + | chr3.4:93900900-93900919 | None:intergenic | 30.0% | |
| GTGGGAAAATAGGAAATAAA+TGG | + | chr3.4:93900903-93900922 | None:intergenic | 30.0% | |
| TGTATACACTTACCATACAA+GGG | + | chr3.4:93900930-93900949 | None:intergenic | 30.0% | |
| TTACTAGCATCACCAAATAT+AGG | + | chr3.4:93901167-93901186 | None:intergenic | 30.0% | |
| TTGAATCCAAACAAACAGAA+AGG | + | chr3.4:93900427-93900446 | None:intergenic | 30.0% | |
| TTGTATACACTTACCATACA+AGG | + | chr3.4:93900931-93900950 | None:intergenic | 30.0% | |
| ! | ATCCTTCTTTTTCTTCTTCT+TGG | + | chr3.4:93902541-93902560 | None:intergenic | 30.0% |
| ! | CTTTTTCTTCCTTTCCTTTT+TGG | + | chr3.4:93902023-93902042 | None:intergenic | 30.0% |
| ! | GTTGCTTTGGATTTATTTCA+TGG | + | chr3.4:93901062-93901081 | None:intergenic | 30.0% |
| ! | TGTGTTACTGTAATTTCTGT+AGG | - | chr3.4:93901581-93901600 | MS.gene072970:intron | 30.0% |
| !! | GAGGAAGATATTTTAGATGA+CGG | - | chr3.4:93901875-93901894 | MS.gene072970:intron | 30.0% |
| !! | TGATACGTTTCAGTTTTAAC+AGG | - | chr3.4:93901841-93901860 | MS.gene072970:intron | 30.0% |
| !!! | AGCTGGTTTTTCTATTTAAC+TGG | - | chr3.4:93902307-93902326 | MS.gene072970:intron | 30.0% |
| !!! | GCTGGTTTTTCTATTTAACT+GGG | - | chr3.4:93902308-93902327 | MS.gene072970:intron | 30.0% |
| !!! | TATAGCTGTCCTTTTTTTGT+TGG | - | chr3.4:93900559-93900578 | MS.gene072970:intron | 30.0% |
| !!! | TCTACACTATTGGCATTTTT+TGG | - | chr3.4:93902227-93902246 | MS.gene072970:intron | 30.0% |
| AAACTGTCGTCAAATTTCGT+CGG | - | chr3.4:93900949-93900968 | MS.gene072970:CDS | 35.0% | |
| AAAGAAGGATAAAGCTTCCA+AGG | - | chr3.4:93902551-93902570 | MS.gene072970:CDS | 35.0% | |
| AACAAACAATGGGACTGATA+TGG | - | chr3.4:93902611-93902630 | MS.gene072970:CDS | 35.0% | |
| AACAGCTCAGAAACAAACAA+TGG | - | chr3.4:93902600-93902619 | MS.gene072970:CDS | 35.0% | |
| AAGGAGGTGAAAGAATCTAA+TGG | - | chr3.4:93902570-93902589 | MS.gene072970:CDS | 35.0% | |
| AAGTTCAATGGCAGTTATGT+TGG | - | chr3.4:93901449-93901468 | MS.gene072970:intron | 35.0% | |
| AATGTTTGGATGAGTTGCTT+TGG | + | chr3.4:93901075-93901094 | None:intergenic | 35.0% | |
| ACAGCTCAGAAACAAACAAT+GGG | - | chr3.4:93902601-93902620 | MS.gene072970:CDS | 35.0% | |
| ATTAGATTCTTTCACCTCCT+TGG | + | chr3.4:93902571-93902590 | None:intergenic | 35.0% | |
| ATTATAACCAACAACCAGTG+CGG | - | chr3.4:93902820-93902839 | MS.gene072970:CDS | 35.0% | |
| CGTGAGTTCATGTTATTGTT+TGG | - | chr3.4:93902185-93902204 | MS.gene072970:intron | 35.0% | |
| CGTTATTACATAGTTACGAC+AGG | - | chr3.4:93900818-93900837 | MS.gene072970:CDS | 35.0% | |
| CTGTTTGTATAGACTAACCT+GGG | - | chr3.4:93900691-93900710 | MS.gene072970:intron | 35.0% | |
| GAAGAAGAAGAAATCAGACA+AGG | - | chr3.4:93900165-93900184 | MS.gene072970:CDS | 35.0% | |
| GACAAGGACAAGAAGAATAA+AGG | - | chr3.4:93900181-93900200 | MS.gene072970:CDS | 35.0% | |
| GCCATTATTAGGAAGTTCAA+TGG | - | chr3.4:93901437-93901456 | MS.gene072970:intron | 35.0% | |
| GCCATTGAACTTCCTAATAA+TGG | + | chr3.4:93901441-93901460 | None:intergenic | 35.0% | |
| GTGATTTACCTCTGTTTGTT+TGG | - | chr3.4:93901770-93901789 | MS.gene072970:intron | 35.0% | |
| GTTACTGTAATTTCTGTAGG+AGG | - | chr3.4:93901584-93901603 | MS.gene072970:intron | 35.0% | |
| TAGGAGGATAACTACTATGT+GGG | - | chr3.4:93901600-93901619 | MS.gene072970:intron | 35.0% | |
| TATTGTGTTAGGAAACATGG+TGG | - | chr3.4:93900453-93900472 | MS.gene072970:intron | 35.0% | |
| TCTGCAGTACCAACAAAAAA+AGG | + | chr3.4:93900571-93900590 | None:intergenic | 35.0% | |
| TGCCAAGAAGAAGAAAAAGA+AGG | - | chr3.4:93902536-93902555 | MS.gene072970:intron | 35.0% | |
| TGTAATAGGCAGCCATTATT+AGG | - | chr3.4:93901426-93901445 | MS.gene072970:intron | 35.0% | |
| TGTGGGATATTTGTAAGTGA+TGG | - | chr3.4:93901318-93901337 | MS.gene072970:intron | 35.0% | |
| TTCTTCCAAATCGAGCAAAT+CGG | - | chr3.4:93900204-93900223 | MS.gene072970:CDS | 35.0% | |
| TTTCTTCTTCTTGGCATTCT+TGG | + | chr3.4:93902532-93902551 | None:intergenic | 35.0% | |
| ! | CTGTCACATGATTTTTGTGT+GGG | - | chr3.4:93901301-93901320 | MS.gene072970:intron | 35.0% |
| ! | GTGGTTGTTATTCTGTATGT+TGG | - | chr3.4:93901515-93901534 | MS.gene072970:intron | 35.0% |
| ! | TATTTGTAAGTGATGGAACC+AGG | - | chr3.4:93901325-93901344 | MS.gene072970:intron | 35.0% |
| ! | TCTGTCACATGATTTTTGTG+TGG | - | chr3.4:93901300-93901319 | MS.gene072970:intron | 35.0% |
| ! | TGCATTTTGTAGCTTTTCGA+TGG | + | chr3.4:93900848-93900867 | None:intergenic | 35.0% |
| !! | AGGATAAGAAAGGTGTTGAA+GGG | - | chr3.4:93902469-93902488 | MS.gene072970:intron | 35.0% |
| !! | ATTGTTTGTTTCTGAGCTGT+TGG | + | chr3.4:93902601-93902620 | None:intergenic | 35.0% |
| !! | TTGTTTGTTTCTGAGCTGTT+GGG | + | chr3.4:93902600-93902619 | None:intergenic | 35.0% |
| !! | TTGTTTTACATGAGTGTAGC+TGG | - | chr3.4:93901191-93901210 | MS.gene072970:intron | 35.0% |
| !!! | CACTATTGGCATTTTTTGGT+TGG | - | chr3.4:93902231-93902250 | MS.gene072970:intron | 35.0% |
| AAACCAGCTAGTGCAAAAAG+AGG | + | chr3.4:93902296-93902315 | None:intergenic | 40.0% | |
| AAAGGAACTTGAAGAGCTTG+AGG | - | chr3.4:93902039-93902058 | MS.gene072970:intron | 40.0% | |
| AACCAGCTAGTGCAAAAAGA+GGG | + | chr3.4:93902295-93902314 | None:intergenic | 40.0% | |
| AGTGCAAAAAGAGGGGAAAA+TGG | + | chr3.4:93902287-93902306 | None:intergenic | 40.0% | |
| ATACACTTACCATACAAGGG+TGG | + | chr3.4:93900927-93900946 | None:intergenic | 40.0% | |
| ATGCCAATAGTGTAGAGCAA+AGG | + | chr3.4:93902223-93902242 | None:intergenic | 40.0% | |
| CAAATCGAGCAAATCGGAAT+CGG | - | chr3.4:93900210-93900229 | MS.gene072970:CDS | 40.0% | |
| GACAACTCTCCAAAAAGGAA+AGG | - | chr3.4:93902011-93902030 | MS.gene072970:intron | 40.0% | |
| GCTGTTTGTATAGACTAACC+TGG | - | chr3.4:93900690-93900709 | MS.gene072970:intron | 40.0% | |
| GGTTGAGGGTTAGAAAATTG+AGG | + | chr3.4:93900331-93900350 | None:intergenic | 40.0% | |
| GTAAATCTGTGAGCAAAAGC+AGG | + | chr3.4:93902264-93902283 | None:intergenic | 40.0% | |
| GTACCTTTGCTCTACACTAT+TGG | - | chr3.4:93902217-93902236 | MS.gene072970:intron | 40.0% | |
| GTAGGAGGATAACTACTATG+TGG | - | chr3.4:93901599-93901618 | MS.gene072970:intron | 40.0% | |
| GTGCAAAAAGAGGGGAAAAT+GGG | + | chr3.4:93902286-93902305 | None:intergenic | 40.0% | |
| GTGCAGTATGCATATCAGAA+AGG | - | chr3.4:93901479-93901498 | MS.gene072970:intron | 40.0% | |
| TATGATAGAGCCATGCTATG+CGG | + | chr3.4:93900987-93901006 | None:intergenic | 40.0% | |
| TCAACACCTTTCTTATCCTG+AGG | + | chr3.4:93902468-93902487 | None:intergenic | 40.0% | |
| TGAGGGTTAGAAAATTGAGG+CGG | + | chr3.4:93900328-93900347 | None:intergenic | 40.0% | |
| TGGTGGAATCAGGATATTAG+TGG | - | chr3.4:93900470-93900489 | MS.gene072970:intron | 40.0% | |
| ! | AAGATCCTCCTCCGAATTTT+CGG | + | chr3.4:93902646-93902665 | None:intergenic | 40.0% |
| ! | TTACCTCTGTTTGTTTGGTG+TGG | - | chr3.4:93901775-93901794 | MS.gene072970:intron | 40.0% |
| ! | TTAGGAAACATGGTGGAATC+AGG | - | chr3.4:93900460-93900479 | MS.gene072970:intron | 40.0% |
| ! | TTTAGATGACGGTGATGAAG+AGG | - | chr3.4:93901886-93901905 | MS.gene072970:intron | 40.0% |
| !! | CAGGATAAGAAAGGTGTTGA+AGG | - | chr3.4:93902468-93902487 | MS.gene072970:intron | 40.0% |
| !! | GAGGCTCTTTTAGCTGATTT+TGG | - | chr3.4:93902058-93902077 | MS.gene072970:intron | 40.0% |
| !! | GCACTGGTTGTTGGTTATAA+TGG | + | chr3.4:93902821-93902840 | None:intergenic | 40.0% |
| !! | GGATAAGAAAGGTGTTGAAG+GGG | - | chr3.4:93902470-93902489 | MS.gene072970:intron | 40.0% |
| !! | TGTTTGTTTGGTGTGGCTAT+CGG | - | chr3.4:93901782-93901801 | MS.gene072970:intron | 40.0% |
| AATGGGACTGATATGGCTAC+AGG | - | chr3.4:93902618-93902637 | MS.gene072970:CDS | 45.0% | |
| ACCAGCTAGTGCAAAAAGAG+GGG | + | chr3.4:93902294-93902313 | None:intergenic | 45.0% | |
| AGAGCGACAACTCTCCAAAA+AGG | - | chr3.4:93902006-93902025 | MS.gene072970:intron | 45.0% | |
| CAAGTATGCACATGCACAAC+AGG | + | chr3.4:93901120-93901139 | None:intergenic | 45.0% | |
| CAGAGACTGTTTCCTACAGA+TGG | + | chr3.4:93901551-93901570 | None:intergenic | 45.0% | |
| CATCTGTAGGAAACAGTCTC+TGG | - | chr3.4:93901549-93901568 | MS.gene072970:intron | 45.0% | |
| CTGTTGTGCATGTGCATACT+TGG | - | chr3.4:93901118-93901137 | MS.gene072970:intron | 45.0% | |
| CTTCTTGGCATTCTTGGACT+CGG | + | chr3.4:93902526-93902545 | None:intergenic | 45.0% | |
| GAAGGATAAAGCTTCCAAGG+AGG | - | chr3.4:93902554-93902573 | MS.gene072970:CDS | 45.0% | |
| GAGCAAACCTCAAAATGCTC+CGG | + | chr3.4:93900367-93900386 | None:intergenic | 45.0% | |
| GGACAGAGAATACCATCTGT+AGG | - | chr3.4:93901536-93901555 | MS.gene072970:intron | 45.0% | |
| GTTAGAAAATTGAGGCGGTG+CGG | + | chr3.4:93900323-93900342 | None:intergenic | 45.0% | |
| TAGCCACACCAAACAAACAG+AGG | + | chr3.4:93901781-93901800 | None:intergenic | 45.0% | |
| TTAACAGGATACTGAGAGCG+AGG | - | chr3.4:93901856-93901875 | MS.gene072970:intron | 45.0% | |
| TTACCATACAAGGGTGGTGT+GGG | + | chr3.4:93900921-93900940 | None:intergenic | 45.0% | |
| TTCTTGGCATTCTTGGACTC+GGG | + | chr3.4:93902525-93902544 | None:intergenic | 45.0% | |
| ! | CGATTCCGATTTGCTCGATT+TGG | + | chr3.4:93900212-93900231 | None:intergenic | 45.0% |
| ! | GCTTGCTGCAGCAAAGAAAA+AGG | - | chr3.4:93902788-93902807 | MS.gene072970:CDS | 45.0% |
| ! | GGAGTACCTCAGGATAAGAA+AGG | - | chr3.4:93902459-93902478 | MS.gene072970:intron | 45.0% |
| ! | TAGAGCAAAGGTACGAGTGA+CGG | + | chr3.4:93902211-93902230 | None:intergenic | 45.0% |
| ! | TCGTCAAATTTCGTCGGTTG+CGG | - | chr3.4:93900955-93900974 | MS.gene072970:CDS | 45.0% |
| !! | TGTATTAGCAGGAGTACCTC+AGG | - | chr3.4:93902449-93902468 | MS.gene072970:intron | 45.0% |
| !! | TTGTTTCTGAGCTGTTGGGA+TGG | + | chr3.4:93902596-93902615 | None:intergenic | 45.0% |
| !!! | GTGCATTTTGTCGCTTTCGA+TGG | + | chr3.4:93900787-93900806 | None:intergenic | 45.0% |
| AAGCTGCTGCTAGGAATGCA+AGG | - | chr3.4:93902766-93902785 | MS.gene072970:CDS | 50.0% | |
| CAAATCGGAATCGGAATCGC+AGG | - | chr3.4:93900219-93900238 | MS.gene072970:CDS | 50.0% | |
| CAAGCTCAAGATGAGTCGCA+AGG | - | chr3.4:93902109-93902128 | MS.gene072970:intron | 50.0% | |
| CAAGGGTGGTGTGGGAAAAT+AGG | + | chr3.4:93900913-93900932 | None:intergenic | 50.0% | |
| CGCTGCAAAAACGTTGGTGT+TGG | + | chr3.4:93900131-93900150 | None:intergenic | 50.0% | |
| CTTACCATACAAGGGTGGTG+TGG | + | chr3.4:93900922-93900941 | None:intergenic | 50.0% | |
| GCCCATGAGGTTGCATTCAA+CGG | + | chr3.4:93900262-93900281 | None:intergenic | 50.0% | |
| GCCGTTGAATGCAACCTCAT+GGG | - | chr3.4:93900258-93900277 | MS.gene072970:CDS | 50.0% | |
| GTCATCAACATCAGCCCATG+AGG | + | chr3.4:93900275-93900294 | None:intergenic | 50.0% | |
| TCAACCCAGTGAGGACAAAC+CGG | - | chr3.4:93900345-93900364 | MS.gene072970:CDS | 50.0% | |
| TCAGCGTGCTTCTTAACCTC+AGG | + | chr3.4:93901962-93901981 | None:intergenic | 50.0% | |
| TCAGTCTTCACAGCATGCTC+TGG | + | chr3.4:93901938-93901957 | None:intergenic | 50.0% | |
| TGCTGTGAAGACTGAACCTG+AGG | - | chr3.4:93901943-93901962 | MS.gene072970:intron | 50.0% | |
| TTCTAACCCTCAACCCAGTG+AGG | - | chr3.4:93900336-93900355 | MS.gene072970:CDS | 50.0% | |
| TTTCCCACACCACCCTTGTA+TGG | - | chr3.4:93900915-93900934 | MS.gene072970:CDS | 50.0% | |
| ! | AATCGGAATCGCAGGCGTTT+TGG | - | chr3.4:93900227-93900246 | MS.gene072970:CDS | 50.0% |
| ! | AGATGACGGTGATGAAGAGG+AGG | - | chr3.4:93901889-93901908 | MS.gene072970:intron | 50.0% |
| ! | ATCGAGCGCTGCAAAAACGT+TGG | + | chr3.4:93900137-93900156 | None:intergenic | 50.0% |
| ! | ATCGGAATCGCAGGCGTTTT+GGG | - | chr3.4:93900228-93900247 | MS.gene072970:CDS | 50.0% |
| ! | GGTGTTGAAGGGGATGTTGA+TGG | - | chr3.4:93902480-93902499 | MS.gene072970:intron | 50.0% |
| ! | GTTTGTCCTCACTGGGTTGA+GGG | + | chr3.4:93900345-93900364 | None:intergenic | 50.0% |
| ! | TCCCCTCTTTTTGCACTAGC+TGG | - | chr3.4:93902290-93902309 | MS.gene072970:intron | 50.0% |
| ! | TGAAGTTCCTGTGGTGCCAA+AGG | - | chr3.4:93901979-93901998 | MS.gene072970:intron | 50.0% |
| ! | TGGTGTGGCTATCGGTTGAA+TGG | - | chr3.4:93901790-93901809 | MS.gene072970:intron | 50.0% |
| ! | TTCACAGCATGCTCTGGTTC+TGG | + | chr3.4:93901932-93901951 | None:intergenic | 50.0% |
| !! | GGACAAACCGGAGCATTTTG+AGG | - | chr3.4:93900357-93900376 | MS.gene072970:CDS | 50.0% |
| !! | GGCTACAGGCACCGAAAATT+CGG | - | chr3.4:93902632-93902651 | MS.gene072970:CDS | 50.0% |
| !! | TACAGGCACCGAAAATTCGG+AGG | - | chr3.4:93902635-93902654 | MS.gene072970:CDS | 50.0% |
| !! | TGTTTGCTATGCTGTCTGCC+TGG | + | chr3.4:93901346-93901365 | None:intergenic | 50.0% |
| AGAAAATTGAGGCGGTGCGG+TGG | + | chr3.4:93900320-93900339 | None:intergenic | 55.0% | |
| AGTTGTCGCTCTGCCTCCTT+TGG | + | chr3.4:93901998-93902017 | None:intergenic | 55.0% | |
| CCAACGAACCCTCATCCCTT+CGG | + | chr3.4:93900102-93900121 | None:intergenic | 55.0% | |
| CGCCGTTGAATGCAACCTCA+TGG | - | chr3.4:93900257-93900276 | MS.gene072970:CDS | 55.0% | |
| CTGCTCAAGAAGCTGCTGCT+AGG | - | chr3.4:93902757-93902776 | MS.gene072970:CDS | 55.0% | |
| GAAGCACGCTGAAGTTCCTG+TGG | - | chr3.4:93901970-93901989 | MS.gene072970:intron | 55.0% | |
| GCGGTTTGTACCGCATAGCA+TGG | - | chr3.4:93900974-93900993 | MS.gene072970:CDS | 55.0% | |
| GGTTTGTCCTCACTGGGTTG+AGG | + | chr3.4:93900346-93900365 | None:intergenic | 55.0% | |
| ! | AGTTCCTGTGGTGCCAAAGG+AGG | - | chr3.4:93901982-93902001 | MS.gene072970:intron | 55.0% |
| ! | ATGCTCCGGTTTGTCCTCAC+TGG | + | chr3.4:93900353-93900372 | None:intergenic | 55.0% |
| ! | TGCTCCGGTTTGTCCTCACT+GGG | + | chr3.4:93900352-93900371 | None:intergenic | 55.0% |
| !! | AGGCACCGAAAATTCGGAGG+AGG | - | chr3.4:93902638-93902657 | MS.gene072970:CDS | 55.0% |
| CCGAAGGGATGAGGGTTCGT+TGG | - | chr3.4:93900099-93900118 | MS.gene072970:CDS | 60.0% | |
| GAGGTTGCATTCAACGGCGC+CGG | + | chr3.4:93900256-93900275 | None:intergenic | 60.0% | |
| GGTGGAAGCCGAAGGGATGA+GGG | - | chr3.4:93900091-93900110 | MS.gene072970:CDS | 60.0% | |
| TCTGCCTCCTTTGGCACCAC+AGG | + | chr3.4:93901989-93902008 | None:intergenic | 60.0% | |
| TGGTGGAAGCCGAAGGGATG+AGG | - | chr3.4:93900090-93900109 | MS.gene072970:CDS | 60.0% | |
| !! | ATCGCAGGCGTTTTGGGCTC+CGG | - | chr3.4:93900234-93900253 | MS.gene072970:CDS | 60.0% |
| !! | GGTTGGTGGTGGAAGCCGAA+GGG | - | chr3.4:93900084-93900103 | MS.gene072970:CDS | 60.0% |
| !! | TGGTTGGTGGTGGAAGCCGA+AGG | - | chr3.4:93900083-93900102 | MS.gene072970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93900082 | 93902845 | 93900082 | ID=MS.gene072970 |
| chr3.4 | mRNA | 93900082 | 93902845 | 93900082 | ID=MS.gene072970.t1;Parent=MS.gene072970 |
| chr3.4 | exon | 93902549 | 93902845 | 93902549 | ID=MS.gene072970.t1.exon1;Parent=MS.gene072970.t1 |
| chr3.4 | CDS | 93902549 | 93902845 | 93902549 | ID=cds.MS.gene072970.t1;Parent=MS.gene072970.t1 |
| chr3.4 | exon | 93900797 | 93901064 | 93900797 | ID=MS.gene072970.t1.exon2;Parent=MS.gene072970.t1 |
| chr3.4 | CDS | 93900797 | 93901064 | 93900797 | ID=cds.MS.gene072970.t1;Parent=MS.gene072970.t1 |
| chr3.4 | exon | 93900082 | 93900467 | 93900082 | ID=MS.gene072970.t1.exon3;Parent=MS.gene072970.t1 |
| chr3.4 | CDS | 93900082 | 93900467 | 93900082 | ID=cds.MS.gene072970.t1;Parent=MS.gene072970.t1 |
| Gene Sequence |
| Protein sequence |
