Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073500.t1 | XP_024638721.1 | 97.1 | 278 | 8 | 0 | 1 | 278 | 100 | 377 | 6.30E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073500.t1 | Q0WQX7 | 66.8 | 277 | 92 | 0 | 1 | 277 | 112 | 388 | 7.4e-107 | 388.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073500.t1 | A0A396I2V4 | 97.1 | 278 | 8 | 0 | 1 | 278 | 100 | 377 | 4.5e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene073500 | 0.800959 | 1.13E-48 | -1.69E-46 |
| MS.gene04920 | MS.gene073500 | 0.807859 | 4.11E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene073500 | 0.802274 | 6.06E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene073500 | 0.802845 | 4.62E-49 | -1.69E-46 |
| MS.gene05156 | MS.gene073500 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene073500 | 0.823156 | 1.61E-53 | -1.69E-46 |
| MS.gene052053 | MS.gene073500 | 0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene073500 | 0.839588 | 1.45E-57 | -1.69E-46 |
| MS.gene052793 | MS.gene073500 | 0.81328 | 2.77E-51 | -1.69E-46 |
| MS.gene054957 | MS.gene073500 | 0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene055150 | MS.gene073500 | 0.847887 | 8.70E-60 | -1.69E-46 |
| MS.gene05624 | MS.gene073500 | 0.801576 | 8.44E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene073500 | 0.803276 | 3.77E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene073500 | 0.815356 | 9.64E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene073500 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene073500 | -0.800074 | 1.71E-48 | -1.69E-46 |
| MS.gene057174 | MS.gene073500 | 0.808545 | 2.94E-50 | -1.69E-46 |
| MS.gene058095 | MS.gene073500 | 0.825736 | 3.98E-54 | -1.69E-46 |
| MS.gene05878 | MS.gene073500 | 0.829739 | 4.35E-55 | -1.69E-46 |
| MS.gene059436 | MS.gene073500 | 0.817784 | 2.76E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene073500 | 0.845829 | 3.18E-59 | -1.69E-46 |
| MS.gene05985 | MS.gene073500 | -0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene060338 | MS.gene073500 | 0.805459 | 1.32E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene073500 | 0.824708 | 6.97E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene073500 | 0.815098 | 1.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTAAAATCACAGGCTTTC+TGG | 0.126705 | 4.1:+76402219 | MS.gene073500:intron |
| ATTCGGCTTGAGCAAGAATT+TGG | 0.178928 | 4.1:+76400262 | MS.gene073500:CDS |
| GGTGCTTCTGGTGCGCTCTT+TGG | 0.206709 | 4.1:+76401103 | MS.gene073500:CDS |
| AGAAATATCAGTGCATATTA+TGG | 0.219150 | 4.1:+76401496 | MS.gene073500:CDS |
| CATATTGGAGGCTTTCTTAC+AGG | 0.232404 | 4.1:+76401369 | MS.gene073500:CDS |
| AACATTTCTGTCGGTGCTTC+TGG | 0.248422 | 4.1:+76401091 | MS.gene073500:CDS |
| GGACTGCTATTTGTCATATC+TGG | 0.252446 | 4.1:+76401028 | MS.gene073500:CDS |
| CACTGATATTTCTTGAATTT+AGG | 0.254249 | 4.1:-76401486 | None:intergenic |
| CTTGCGTTCCAACTTCAAAA+TGG | 0.280990 | 4.1:+76402307 | MS.gene073500:CDS |
| GTGCTTCTGGTGCGCTCTTT+GGG | 0.288890 | 4.1:+76401104 | MS.gene073500:CDS |
| TCCTTGATCATTCTAATTGT+TGG | 0.293394 | 4.1:+76401525 | MS.gene073500:CDS |
| GTGGACAACTTTGCTCATAT+TGG | 0.333817 | 4.1:+76401354 | MS.gene073500:CDS |
| TATCAGAACTCATCACTAAT+TGG | 0.358975 | 4.1:+76401143 | MS.gene073500:CDS |
| CCTTGATCATTCTAATTGTT+GGG | 0.370688 | 4.1:+76401526 | MS.gene073500:CDS |
| CATTCAGCTGGCTGCCAAGC+TGG | 0.392809 | 4.1:-76403436 | None:intergenic |
| GAGTACACAATTGCTGGATC+TGG | 0.403255 | 4.1:-76403517 | None:intergenic |
| CTATTTGTCATATCTGGATT+CGG | 0.404511 | 4.1:+76401034 | MS.gene073500:CDS |
| AAAGCTGAGTACACAATTGC+TGG | 0.409324 | 4.1:-76403523 | None:intergenic |
| AACAATATGCTGCCTCTGTA+TGG | 0.412864 | 4.1:-76402335 | None:intergenic |
| CTTGAGCAAGAATTTGGGTT+TGG | 0.415910 | 4.1:+76400268 | MS.gene073500:CDS |
| TTCGGCTTGAGCAAGAATTT+GGG | 0.416495 | 4.1:+76400263 | MS.gene073500:CDS |
| GAAATATCAGTGCATATTAT+GGG | 0.420709 | 4.1:+76401497 | MS.gene073500:CDS |
| TTGGAACGCAAGACAGATAA+TGG | 0.421009 | 4.1:-76402296 | None:intergenic |
| ATTGTTGTCAATCTCGCAAT+CGG | 0.426698 | 4.1:+76401318 | MS.gene073500:CDS |
| TTTCTTACAGGATTTCTTCT+CGG | 0.427048 | 4.1:+76401381 | MS.gene073500:CDS |
| TACAGAGGCAGCATATTGTT+TGG | 0.434635 | 4.1:+76402338 | MS.gene073500:CDS |
| CATCTATTAGCAAATATGTT+GGG | 0.437501 | 4.1:+76400223 | MS.gene073500:CDS |
| GGTGCGCTCTTTGGGTTGCT+AGG | 0.443750 | 4.1:+76401112 | MS.gene073500:CDS |
| TTGAGCATGTTACATTCAGC+TGG | 0.449466 | 4.1:-76403448 | None:intergenic |
| AATTTAGGCTTAGCACGTGT+TGG | 0.464408 | 4.1:-76401471 | None:intergenic |
| GACAACTTTGCTCATATTGG+AGG | 0.471627 | 4.1:+76401357 | MS.gene073500:CDS |
| TCATCTATTAGCAAATATGT+TGG | 0.476019 | 4.1:+76400222 | MS.gene073500:CDS |
| TGATACGACCTCAGTTTGGA+TGG | 0.480933 | 4.1:+76401415 | MS.gene073500:CDS |
| TGGACTTGTTGCACTCCTCA+AGG | 0.486516 | 4.1:+76402242 | MS.gene073500:CDS |
| GTTGCTTAGGCTACAGAAGA+TGG | 0.489551 | 4.1:+76400117 | None:intergenic |
| CCCAACAATTAGAATGATCA+AGG | 0.501839 | 4.1:-76401526 | None:intergenic |
| ATGCAAATGAGCACTGCTCT+TGG | 0.503314 | 4.1:+76402271 | MS.gene073500:CDS |
| TGCTGGATCTGGGAACTAGT+TGG | 0.507767 | 4.1:-76403506 | None:intergenic |
| ATGCACCTTGTTATCATACA+TGG | 0.523566 | 4.1:-76401167 | None:intergenic |
| ATCACTTGTATGTGGCTACA+TGG | 0.524831 | 4.1:+76400190 | MS.gene073500:CDS |
| TTGTTGTCAATCTCGCAATC+GGG | 0.524856 | 4.1:+76401319 | MS.gene073500:CDS |
| ATGTGGACAGAGTGGTTCAC+AGG | 0.525902 | 4.1:+76400149 | MS.gene073500:CDS |
| AGTACACAATTGCTGGATCT+GGG | 0.526323 | 4.1:-76403516 | None:intergenic |
| TTGCTTAGGCTACAGAAGAT+GGG | 0.533960 | 4.1:+76400118 | None:intergenic |
| GGACTTGTTGCACTCCTCAA+GGG | 0.538142 | 4.1:+76402243 | MS.gene073500:CDS |
| ACTCTACACGAGCATATCGT+TGG | 0.555362 | 4.1:-76401443 | None:intergenic |
| GGCGTCTCATCACTTGTATG+TGG | 0.556769 | 4.1:+76400182 | MS.gene073500:CDS |
| GATACGACCTCAGTTTGGAT+GGG | 0.558496 | 4.1:+76401416 | MS.gene073500:CDS |
| ATTCAGTCAAACATTTCTGT+CGG | 0.569262 | 4.1:+76401082 | MS.gene073500:CDS |
| GGCTCTTGATGTGGACAGAG+TGG | 0.574158 | 4.1:+76400141 | MS.gene073500:CDS |
| TGCTTAGGCTACAGAAGATG+GGG | 0.585088 | 4.1:+76400119 | None:intergenic |
| AAAATGCAGTCAAACCAGCT+TGG | 0.586288 | 4.1:+76403422 | MS.gene073500:intron |
| TGAGCAAAGTTGTCCACATG+TGG | 0.592166 | 4.1:-76401348 | None:intergenic |
| TGGTTCACAGGCACCAAGGT+TGG | 0.597747 | 4.1:+76400161 | MS.gene073500:CDS |
| TTGGTCCATGTATGATAACA+AGG | 0.606083 | 4.1:+76401162 | MS.gene073500:CDS |
| AAGTGATGAGACGCCAACCT+TGG | 0.609470 | 4.1:-76400174 | None:intergenic |
| CATTTGCATCAACACCCTTG+AGG | 0.610454 | 4.1:-76402257 | None:intergenic |
| AATGTAACATGCTCAAGCAA+TGG | 0.621258 | 4.1:+76403455 | MS.gene073500:CDS |
| TAAAATCACAGGCTTTCTGG+TGG | 0.622695 | 4.1:+76402222 | MS.gene073500:intron |
| TTTGTCATATCTGGATTCGG+AGG | 0.654649 | 4.1:+76401037 | MS.gene073500:CDS |
| TGGTTTACCCATCCAAACTG+AGG | 0.662759 | 4.1:-76401423 | None:intergenic |
| AATCGGGATTCTTCCACATG+TGG | 0.669276 | 4.1:+76401335 | MS.gene073500:CDS |
| AGAGTGGTTCACAGGCACCA+AGG | 0.684956 | 4.1:+76400157 | MS.gene073500:CDS |
| AAAATGGAACTGCCATACAG+AGG | 0.686757 | 4.1:+76402323 | MS.gene073500:CDS |
| CAATTAGAATGATCAAGGAG+AGG | 0.698764 | 4.1:-76401521 | None:intergenic |
| GCTTAGGCTACAGAAGATGG+GGG | 0.722579 | 4.1:+76400120 | None:intergenic |
| ACTTGTATGTGGCTACATGG+TGG | 0.745572 | 4.1:+76400193 | MS.gene073500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAGTAATAATTTAAAAAAA+TGG | - | chr4.1:76402117-76402136 | None:intergenic | 10.0% |
| !! | TTATAAATAAATTCGTTCAT+AGG | - | chr4.1:76402411-76402430 | None:intergenic | 15.0% |
| !! | TTCTATAAAATAACATCAAA+CGG | - | chr4.1:76403104-76403123 | None:intergenic | 15.0% |
| !!! | TAAACAAAAATCTACTTTTT+AGG | - | chr4.1:76403254-76403273 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTTTTCTGTTT+TGG | + | chr4.1:76403367-76403386 | MS.gene073500:intron | 15.0% |
| !! | AAAAATTGTCCTATTATCAT+TGG | + | chr4.1:76400770-76400789 | MS.gene073500:intron | 20.0% |
| !! | AAAGTAACAATACTTGAAAA+GGG | - | chr4.1:76402435-76402454 | None:intergenic | 20.0% |
| !! | AAATCTTCTGTTACATTTAT+TGG | + | chr4.1:76401803-76401822 | MS.gene073500:intron | 20.0% |
| !! | AACAAATTTAAGTCCTATTA+TGG | + | chr4.1:76400590-76400609 | MS.gene073500:intron | 20.0% |
| !! | ACAAGATAAAAAAATAACAC+TGG | - | chr4.1:76401989-76402008 | None:intergenic | 20.0% |
| !! | AGTTACAAGAAAATATTCAT+TGG | - | chr4.1:76402805-76402824 | None:intergenic | 20.0% |
| !! | ATACAGAATAAAAGAATACT+TGG | - | chr4.1:76400656-76400675 | None:intergenic | 20.0% |
| !! | CAAAATTTGGTATACTAATA+GGG | - | chr4.1:76400366-76400385 | None:intergenic | 20.0% |
| !! | TAAAGTAACAATACTTGAAA+AGG | - | chr4.1:76402436-76402455 | None:intergenic | 20.0% |
| !! | TGAGTAATTCTGTTTATTAT+TGG | + | chr4.1:76400890-76400909 | MS.gene073500:intron | 20.0% |
| !!! | AAAGCAAAAGGAATAAATTT+TGG | - | chr4.1:76400935-76400954 | None:intergenic | 20.0% |
| !!! | AACAAAATTTTGTTTATCAG+TGG | - | chr4.1:76401257-76401276 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTTTTCATAAGCA+TGG | - | chr4.1:76403065-76403084 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTTCATAAGCAT+GGG | - | chr4.1:76403064-76403083 | None:intergenic | 20.0% |
| !!! | CTGTTTTAAACTTAATTTAG+AGG | - | chr4.1:76400847-76400866 | None:intergenic | 20.0% |
| !!! | TAAATTTGAGTTTTGCTTTT+TGG | + | chr4.1:76400397-76400416 | MS.gene073500:intron | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+AGG | + | chr4.1:76403165-76403184 | MS.gene073500:intron | 20.0% |
| !!! | TTTTTGTTTATAAATGTGAC+CGG | + | chr4.1:76403264-76403283 | MS.gene073500:intron | 20.0% |
| ! | AAAATTTGTAAAAACAGTCC+TGG | - | chr4.1:76402609-76402628 | None:intergenic | 25.0% |
| ! | AAATTGCTTGGAGAATTAAT+AGG | + | chr4.1:76400560-76400579 | MS.gene073500:intron | 25.0% |
| ! | AAATTTGTAAAAACAGTCCT+GGG | - | chr4.1:76402608-76402627 | None:intergenic | 25.0% |
| ! | AATTGCTTGGAGAATTAATA+GGG | + | chr4.1:76400561-76400580 | MS.gene073500:intron | 25.0% |
| ! | AGAAATATCAGTGCATATTA+TGG | + | chr4.1:76401496-76401515 | MS.gene073500:CDS | 25.0% |
| ! | ATATTCCTCATTTAACACTT+AGG | + | chr4.1:76402469-76402488 | MS.gene073500:intron | 25.0% |
| ! | ATGTACCAAATATCTTTGAT+GGG | - | chr4.1:76402575-76402594 | None:intergenic | 25.0% |
| ! | ATTTGACCTATAATTATGAC+CGG | - | chr4.1:76403212-76403231 | None:intergenic | 25.0% |
| ! | CACTGATATTTCTTGAATTT+AGG | - | chr4.1:76401489-76401508 | None:intergenic | 25.0% |
| ! | CATCTATTAGCAAATATGTT+GGG | + | chr4.1:76400223-76400242 | MS.gene073500:CDS | 25.0% |
| ! | CATTGAATAACTAATGTATC+CGG | + | chr4.1:76403190-76403209 | MS.gene073500:intron | 25.0% |
| ! | CCAAAATTTGGTATACTAAT+AGG | - | chr4.1:76400367-76400386 | None:intergenic | 25.0% |
| ! | GAAATATCAGTGCATATTAT+GGG | + | chr4.1:76401497-76401516 | MS.gene073500:CDS | 25.0% |
| ! | GTAGATAAATAGAACTAACA+AGG | + | chr4.1:76400720-76400739 | MS.gene073500:intron | 25.0% |
| ! | TAACAAGGAAACAAGTAATT+AGG | + | chr4.1:76400735-76400754 | MS.gene073500:intron | 25.0% |
| ! | TATAGACTAAGACCAAAATT+TGG | - | chr4.1:76400379-76400398 | None:intergenic | 25.0% |
| ! | TATGTACCAAATATCTTTGA+TGG | - | chr4.1:76402576-76402595 | None:intergenic | 25.0% |
| ! | TATTCCTCATTTAACACTTA+GGG | + | chr4.1:76402470-76402489 | MS.gene073500:intron | 25.0% |
| ! | TCATCTATTAGCAAATATGT+TGG | + | chr4.1:76400222-76400241 | MS.gene073500:CDS | 25.0% |
| ! | TGTAATGCTTCTCATTAAAT+AGG | + | chr4.1:76402914-76402933 | MS.gene073500:intron | 25.0% |
| ! | TTTAGATCTAGTGTATGTAA+GGG | + | chr4.1:76401576-76401595 | MS.gene073500:intron | 25.0% |
| !! | AATGTAACAGAAGATTTTGA+TGG | - | chr4.1:76401800-76401819 | None:intergenic | 25.0% |
| !! | ATTAATTCTCCAAGCAATTT+TGG | - | chr4.1:76400560-76400579 | None:intergenic | 25.0% |
| !! | CCTATTAGTATACCAAATTT+TGG | + | chr4.1:76400364-76400383 | MS.gene073500:intron | 25.0% |
| !! | GCATTCTTTTTATTGGAATT+CGG | + | chr4.1:76400245-76400264 | MS.gene073500:CDS | 25.0% |
| !! | GTTAACTTATCTAAAATCAC+AGG | + | chr4.1:76402211-76402230 | MS.gene073500:intron | 25.0% |
| !! | TTTTAGATCTAGTGTATGTA+AGG | + | chr4.1:76401575-76401594 | MS.gene073500:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr4.1:76403155-76403174 | None:intergenic | 25.0% |
| !!! | AAATTTTAGTTGACAGAAAG+AGG | + | chr4.1:76402622-76402641 | MS.gene073500:intron | 25.0% |
| !!! | ATAATATTTTTCAGATGAGG+AGG | - | chr4.1:76402383-76402402 | None:intergenic | 25.0% |
| !!! | CTGATAATATTTTTCAGATG+AGG | - | chr4.1:76402386-76402405 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTCATAAGCATG+GGG | - | chr4.1:76403063-76403082 | None:intergenic | 25.0% |
| AAACTTAACTTCTCTTTCCA+TGG | + | chr4.1:76402692-76402711 | MS.gene073500:intron | 30.0% | |
| AACCTTTCACCAATGATAAT+AGG | - | chr4.1:76400782-76400801 | None:intergenic | 30.0% | |
| AACTTAACTTCTCTTTCCAT+GGG | + | chr4.1:76402693-76402712 | MS.gene073500:intron | 30.0% | |
| AATAACCTGAAAACAGCTTA+TGG | - | chr4.1:76403030-76403049 | None:intergenic | 30.0% | |
| ACTATAATTACCTGGAAAAG+TGG | + | chr4.1:76402540-76402559 | MS.gene073500:intron | 30.0% | |
| AGAAATCTATGGATGATAAC+AGG | + | chr4.1:76400533-76400552 | MS.gene073500:intron | 30.0% | |
| ATACTATATAGCAGACATGA+AGG | + | chr4.1:76401928-76401947 | MS.gene073500:intron | 30.0% | |
| ATGTATCCGGTCATAATTAT+AGG | + | chr4.1:76403203-76403222 | MS.gene073500:intron | 30.0% | |
| ATTAAGCTTCTTATCCATTC+AGG | + | chr4.1:76403325-76403344 | MS.gene073500:intron | 30.0% | |
| ATTCAGTCAAACATTTCTGT+CGG | + | chr4.1:76401082-76401101 | MS.gene073500:CDS | 30.0% | |
| CCTTGATCATTCTAATTGTT+GGG | + | chr4.1:76401526-76401545 | MS.gene073500:CDS | 30.0% | |
| CTATTCCCATCAAAGATATT+TGG | + | chr4.1:76402567-76402586 | MS.gene073500:intron | 30.0% | |
| CTATTTGTCATATCTGGATT+CGG | + | chr4.1:76401034-76401053 | MS.gene073500:CDS | 30.0% | |
| GAAACCAAGTTATTTGCTTT+AGG | + | chr4.1:76401761-76401780 | MS.gene073500:intron | 30.0% | |
| GAAAGGTTAAGAGATGTTAT+TGG | + | chr4.1:76400794-76400813 | MS.gene073500:intron | 30.0% | |
| GTAAACATTCTCATCATGTT+TGG | - | chr4.1:76402833-76402852 | None:intergenic | 30.0% | |
| GTCAAGATTATGCACTTAAA+AGG | + | chr4.1:76401228-76401247 | MS.gene073500:intron | 30.0% | |
| GTTAGCGTTTAAGAAATCTA+TGG | + | chr4.1:76400522-76400541 | MS.gene073500:intron | 30.0% | |
| TACAGCAAGTTATCCATAAT+AGG | - | chr4.1:76400606-76400625 | None:intergenic | 30.0% | |
| TACTATATAGCAGACATGAA+GGG | + | chr4.1:76401929-76401948 | MS.gene073500:intron | 30.0% | |
| TATCAGAACTCATCACTAAT+TGG | + | chr4.1:76401143-76401162 | MS.gene073500:CDS | 30.0% | |
| TCCTTGATCATTCTAATTGT+TGG | + | chr4.1:76401525-76401544 | MS.gene073500:CDS | 30.0% | |
| TCTGTCAAAGATAAAGCAAA+AGG | - | chr4.1:76400947-76400966 | None:intergenic | 30.0% | |
| TTAGATCTAGTGTATGTAAG+GGG | + | chr4.1:76401577-76401596 | MS.gene073500:intron | 30.0% | |
| TTCCAGGTAATTATAGTGTT+AGG | - | chr4.1:76402537-76402556 | None:intergenic | 30.0% | |
| TTTCTTACAGGATTTCTTCT+CGG | + | chr4.1:76401381-76401400 | MS.gene073500:CDS | 30.0% | |
| ! | AATCTAAAACTTGCAACTGT+TGG | - | chr4.1:76401700-76401719 | None:intergenic | 30.0% |
| ! | ATGTTGGGCATTCTTTTTAT+TGG | + | chr4.1:76400238-76400257 | MS.gene073500:CDS | 30.0% |
| ! | ATTGATGATAATGTGACCTT+GGG | - | chr4.1:76402859-76402878 | None:intergenic | 30.0% |
| ! | TATTGATGATAATGTGACCT+TGG | - | chr4.1:76402860-76402879 | None:intergenic | 30.0% |
| ! | TTTTGCTTTATCTTTGACAG+AGG | + | chr4.1:76400946-76400965 | MS.gene073500:intron | 30.0% |
| !!! | GGACAATTTTTTCAGAATAC+AGG | - | chr4.1:76400761-76400780 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCTGTTTTGGTG+TGG | + | chr4.1:76403372-76403391 | MS.gene073500:intron | 30.0% |
| AATGTAACATGCTCAAGCAA+TGG | + | chr4.1:76403455-76403474 | MS.gene073500:CDS | 35.0% | |
| ATAACAGGACCAAAATTGCT+TGG | + | chr4.1:76400548-76400567 | MS.gene073500:intron | 35.0% | |
| ATTGTTGTCAATCTCGCAAT+CGG | + | chr4.1:76401318-76401337 | MS.gene073500:CDS | 35.0% | |
| CAATTAGAATGATCAAGGAG+AGG | - | chr4.1:76401524-76401543 | None:intergenic | 35.0% | |
| CATGAAGGGATAAAACAAAG+AGG | + | chr4.1:76401943-76401962 | MS.gene073500:intron | 35.0% | |
| CCCAACAATTAGAATGATCA+AGG | - | chr4.1:76401529-76401548 | None:intergenic | 35.0% | |
| CTTCAAAAAACCACAAGTGT+CGG | - | chr4.1:76402059-76402078 | None:intergenic | 35.0% | |
| GAGTTAGGAATCCATTTGAA+AGG | - | chr4.1:76400487-76400506 | None:intergenic | 35.0% | |
| GCACATAATATAGTCCTGAA+TGG | - | chr4.1:76403342-76403361 | None:intergenic | 35.0% | |
| GTCCTAACACTATAATTACC+TGG | + | chr4.1:76402532-76402551 | MS.gene073500:intron | 35.0% | |
| GTCCTATTATCATTGGTGAA+AGG | + | chr4.1:76400777-76400796 | MS.gene073500:intron | 35.0% | |
| TAGGAATCCATTTGAAAGGT+CGG | - | chr4.1:76400483-76400502 | None:intergenic | 35.0% | |
| TCTGCCTAAAGCAAATAACT+TGG | - | chr4.1:76401768-76401787 | None:intergenic | 35.0% | |
| TGACAGAAAGAGGTAGAATT+AGG | + | chr4.1:76402632-76402651 | MS.gene073500:intron | 35.0% | |
| TGAGAATGTTTACATTCCCA+AGG | + | chr4.1:76402840-76402859 | MS.gene073500:intron | 35.0% | |
| TGTTTATAAATGTGACCGGA+GGG | + | chr4.1:76403268-76403287 | MS.gene073500:intron | 35.0% | |
| TGTTTATCATATACTCCCTC+CGG | - | chr4.1:76403286-76403305 | None:intergenic | 35.0% | |
| TTGGTCCATGTATGATAACA+AGG | + | chr4.1:76401162-76401181 | MS.gene073500:CDS | 35.0% | |
| TTGTGAAAAGTGAGCAATTC+TGG | + | chr4.1:76400427-76400446 | MS.gene073500:intron | 35.0% | |
| TTGTTTATAAATGTGACCGG+AGG | + | chr4.1:76403267-76403286 | MS.gene073500:intron | 35.0% | |
| ! | AGTTTTGCTACAGTGCTTAT+TGG | + | chr4.1:76401007-76401026 | MS.gene073500:intron | 35.0% |
| ! | ATCTAAAATCACAGGCTTTC+TGG | + | chr4.1:76402219-76402238 | MS.gene073500:intron | 35.0% |
| ! | ATGCACCTTGTTATCATACA+TGG | - | chr4.1:76401170-76401189 | None:intergenic | 35.0% |
| ! | CAAATGGATTCCTAACTCAA+AGG | + | chr4.1:76400489-76400508 | MS.gene073500:intron | 35.0% |
| ! | TTTCATGCTACTTGTGAACA+GGG | - | chr4.1:76401621-76401640 | None:intergenic | 35.0% |
| ! | TTTTTGATACGACCTCAGTT+TGG | + | chr4.1:76401411-76401430 | MS.gene073500:CDS | 35.0% |
| !! | AGTTGGTGGATCTATCATAA+TGG | - | chr4.1:76400459-76400478 | None:intergenic | 35.0% |
| !! | CTGCATTAGTCTTTAGTAGT+AGG | + | chr4.1:76400302-76400321 | MS.gene073500:intron | 35.0% |
| !! | GAATAGTTTTCCACTTTTCC+AGG | - | chr4.1:76402553-76402572 | None:intergenic | 35.0% |
| !! | TGCTCACTTTTCACAAACAA+GGG | - | chr4.1:76400423-76400442 | None:intergenic | 35.0% |
| !! | TTATGGATAACTTGCTGTAG+TGG | + | chr4.1:76400607-76400626 | MS.gene073500:intron | 35.0% |
| !! | TTGCTCACTTTTCACAAACA+AGG | - | chr4.1:76400424-76400443 | None:intergenic | 35.0% |
| AAAATGCAGTCAAACCAGCT+TGG | + | chr4.1:76403422-76403441 | MS.gene073500:intron | 40.0% | |
| AAAATGGAACTGCCATACAG+AGG | + | chr4.1:76402323-76402342 | MS.gene073500:CDS | 40.0% | |
| AAAGCTGAGTACACAATTGC+TGG | - | chr4.1:76403526-76403545 | None:intergenic | 40.0% | |
| AACAATATGCTGCCTCTGTA+TGG | - | chr4.1:76402338-76402357 | None:intergenic | 40.0% | |
| AAGATTCCAACTCCTTGACA+TGG | + | chr4.1:76402721-76402740 | MS.gene073500:intron | 40.0% | |
| AATTTAGGCTTAGCACGTGT+TGG | - | chr4.1:76401474-76401493 | None:intergenic | 40.0% | |
| ACATAAACACTTACTCCCTC+CGG | + | chr4.1:76403133-76403152 | MS.gene073500:intron | 40.0% | |
| AGATTCCAACTCCTTGACAT+GGG | + | chr4.1:76402722-76402741 | MS.gene073500:intron | 40.0% | |
| AGTACACAATTGCTGGATCT+GGG | - | chr4.1:76403519-76403538 | None:intergenic | 40.0% | |
| ATCACTTGTATGTGGCTACA+TGG | + | chr4.1:76400190-76400209 | MS.gene073500:CDS | 40.0% | |
| CAGCTATAAAGCACATACAC+CGG | - | chr4.1:76402168-76402187 | None:intergenic | 40.0% | |
| CATATTGGAGGCTTTCTTAC+AGG | + | chr4.1:76401369-76401388 | MS.gene073500:CDS | 40.0% | |
| CTAAAACTTGCAACTGTTGG+AGG | - | chr4.1:76401697-76401716 | None:intergenic | 40.0% | |
| CTTGCGTTCCAACTTCAAAA+TGG | + | chr4.1:76402307-76402326 | MS.gene073500:CDS | 40.0% | |
| GAAGAAGAATCTGACACATG+TGG | + | chr4.1:76402075-76402094 | MS.gene073500:intron | 40.0% | |
| GACAACTTTGCTCATATTGG+AGG | + | chr4.1:76401357-76401376 | MS.gene073500:CDS | 40.0% | |
| GGTACATACTTATCATTCCC+AGG | + | chr4.1:76402588-76402607 | MS.gene073500:intron | 40.0% | |
| GGTGGATCTATCATAATGGT+AGG | - | chr4.1:76400455-76400474 | None:intergenic | 40.0% | |
| GTGGACAACTTTGCTCATAT+TGG | + | chr4.1:76401354-76401373 | MS.gene073500:CDS | 40.0% | |
| GTTGGAATCTTACATTCCCA+TGG | - | chr4.1:76402712-76402731 | None:intergenic | 40.0% | |
| TAAAATCACAGGCTTTCTGG+TGG | + | chr4.1:76402222-76402241 | MS.gene073500:intron | 40.0% | |
| TACAGAGGCAGCATATTGTT+TGG | + | chr4.1:76402338-76402357 | MS.gene073500:CDS | 40.0% | |
| TCCAGTTTCGTTGAGTAGTT+GGG | + | chr4.1:76401650-76401669 | MS.gene073500:intron | 40.0% | |
| TGCTCCCTAAGTGTTAAATG+AGG | - | chr4.1:76402477-76402496 | None:intergenic | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr4.1:76403151-76403170 | None:intergenic | 40.0% | |
| TGGATTCCTAACTCAAAGGT+TGG | + | chr4.1:76400493-76400512 | MS.gene073500:intron | 40.0% | |
| TTCCAGTTTCGTTGAGTAGT+TGG | + | chr4.1:76401649-76401668 | MS.gene073500:intron | 40.0% | |
| TTGAGCATGTTACATTCAGC+TGG | - | chr4.1:76403451-76403470 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr4.1:76403152-76403171 | None:intergenic | 40.0% | |
| TTGGAACGCAAGACAGATAA+TGG | - | chr4.1:76402299-76402318 | None:intergenic | 40.0% | |
| TTGTTGTCAATCTCGCAATC+GGG | + | chr4.1:76401319-76401338 | MS.gene073500:CDS | 40.0% | |
| TTTGTCATATCTGGATTCGG+AGG | + | chr4.1:76401037-76401056 | MS.gene073500:CDS | 40.0% | |
| ! | AAGTCACCAACCTTTGAGTT+AGG | - | chr4.1:76400502-76400521 | None:intergenic | 40.0% |
| ! | ATTCGGCTTGAGCAAGAATT+TGG | + | chr4.1:76400262-76400281 | MS.gene073500:CDS | 40.0% |
| ! | CTTGAGCAAGAATTTGGGTT+TGG | + | chr4.1:76400268-76400287 | MS.gene073500:CDS | 40.0% |
| ! | GGACTGCTATTTGTCATATC+TGG | + | chr4.1:76401028-76401047 | MS.gene073500:CDS | 40.0% |
| ! | GTTTCATGCTACTTGTGAAC+AGG | - | chr4.1:76401622-76401641 | None:intergenic | 40.0% |
| ! | TTCGGCTTGAGCAAGAATTT+GGG | + | chr4.1:76400263-76400282 | MS.gene073500:CDS | 40.0% |
| !! | CACTTTTGATTCCCATGTCA+AGG | - | chr4.1:76402736-76402755 | None:intergenic | 40.0% |
| !! | CATGTCCATAAGCTGTTTTC+AGG | + | chr4.1:76403022-76403041 | MS.gene073500:intron | 40.0% |
| !!! | GCTGGTTTGACTGCATTTTA+TGG | - | chr4.1:76403421-76403440 | None:intergenic | 40.0% |
| !!! | TGGCAGTTCCATTTTGAAGT+TGG | - | chr4.1:76402318-76402337 | None:intergenic | 40.0% |
| AATCGGGATTCTTCCACATG+TGG | + | chr4.1:76401335-76401354 | MS.gene073500:CDS | 45.0% | |
| ACTCTACACGAGCATATCGT+TGG | - | chr4.1:76401446-76401465 | None:intergenic | 45.0% | |
| ACTTGTATGTGGCTACATGG+TGG | + | chr4.1:76400193-76400212 | MS.gene073500:CDS | 45.0% | |
| CAACACAAATCCGACACTTG+TGG | + | chr4.1:76402046-76402065 | MS.gene073500:intron | 45.0% | |
| CACAAGTAGCATGAAACCTG+AGG | + | chr4.1:76401625-76401644 | MS.gene073500:intron | 45.0% | |
| CATTTGCATCAACACCCTTG+AGG | - | chr4.1:76402260-76402279 | None:intergenic | 45.0% | |
| CCAGTTTCGTTGAGTAGTTG+GGG | + | chr4.1:76401651-76401670 | MS.gene073500:intron | 45.0% | |
| GAGTACACAATTGCTGGATC+TGG | - | chr4.1:76403520-76403539 | None:intergenic | 45.0% | |
| GATACGACCTCAGTTTGGAT+GGG | + | chr4.1:76401416-76401435 | MS.gene073500:CDS | 45.0% | |
| TCAACGAAACTGGAAACCTC+AGG | - | chr4.1:76401644-76401663 | None:intergenic | 45.0% | |
| TGAGCAAAGTTGTCCACATG+TGG | - | chr4.1:76401351-76401370 | None:intergenic | 45.0% | |
| TGAGTAGTTGGGGTAGATTG+CGG | + | chr4.1:76401661-76401680 | MS.gene073500:intron | 45.0% | |
| TGATACGACCTCAGTTTGGA+TGG | + | chr4.1:76401415-76401434 | MS.gene073500:CDS | 45.0% | |
| TGATTCCCATGTCAAGGAGT+TGG | - | chr4.1:76402730-76402749 | None:intergenic | 45.0% | |
| TGGTTTACCCATCCAAACTG+AGG | - | chr4.1:76401426-76401445 | None:intergenic | 45.0% | |
| ! | AACATTTCTGTCGGTGCTTC+TGG | + | chr4.1:76401091-76401110 | MS.gene073500:CDS | 45.0% |
| ! | ATGCAAATGAGCACTGCTCT+TGG | + | chr4.1:76402271-76402290 | MS.gene073500:CDS | 45.0% |
| !! | CACAAGTGTCGGATTTGTGT+TGG | - | chr4.1:76402048-76402067 | None:intergenic | 45.0% |
| !! | CTTAGGGAGCATTTGTCTCA+AGG | + | chr4.1:76402486-76402505 | MS.gene073500:intron | 45.0% |
| AAGTGATGAGACGCCAACCT+TGG | - | chr4.1:76400177-76400196 | None:intergenic | 50.0% | |
| ATGTGGACAGAGTGGTTCAC+AGG | + | chr4.1:76400149-76400168 | MS.gene073500:CDS | 50.0% | |
| CCAACTGCCGACCTTTCAAA+TGG | + | chr4.1:76400473-76400492 | MS.gene073500:intron | 50.0% | |
| CCATTTGAAAGGTCGGCAGT+TGG | - | chr4.1:76400476-76400495 | None:intergenic | 50.0% | |
| CCCCAACTACTCAACGAAAC+TGG | - | chr4.1:76401654-76401673 | None:intergenic | 50.0% | |
| GGCGTCTCATCACTTGTATG+TGG | + | chr4.1:76400182-76400201 | MS.gene073500:CDS | 50.0% | |
| GTTAGTGTCAGAGTCGTGTC+CGG | + | chr4.1:76402146-76402165 | MS.gene073500:intron | 50.0% | |
| TGCTGGATCTGGGAACTAGT+TGG | - | chr4.1:76403509-76403528 | None:intergenic | 50.0% | |
| TTTGAAAGGTCGGCAGTTGG+TGG | - | chr4.1:76400473-76400492 | None:intergenic | 50.0% | |
| !! | GGACTTGTTGCACTCCTCAA+GGG | + | chr4.1:76402243-76402262 | MS.gene073500:CDS | 50.0% |
| !! | TGGACTTGTTGCACTCCTCA+AGG | + | chr4.1:76402242-76402261 | MS.gene073500:CDS | 50.0% |
| AGAGTGGTTCACAGGCACCA+AGG | + | chr4.1:76400157-76400176 | MS.gene073500:CDS | 55.0% | |
| GAAGATGGGGGCTCTTGATG+TGG | + | chr4.1:76400132-76400151 | MS.gene073500:CDS | 55.0% | |
| GGCTCTTGATGTGGACAGAG+TGG | + | chr4.1:76400141-76400160 | MS.gene073500:CDS | 55.0% | |
| GTGCTTCTGGTGCGCTCTTT+GGG | + | chr4.1:76401104-76401123 | MS.gene073500:CDS | 55.0% | |
| TGGTTCACAGGCACCAAGGT+TGG | + | chr4.1:76400161-76400180 | MS.gene073500:CDS | 55.0% | |
| CATTCAGCTGGCTGCCAAGC+TGG | - | chr4.1:76403439-76403458 | None:intergenic | 60.0% | |
| GGTGCTTCTGGTGCGCTCTT+TGG | + | chr4.1:76401103-76401122 | MS.gene073500:CDS | 60.0% | |
| !! | GGTGCGCTCTTTGGGTTGCT+AGG | + | chr4.1:76401112-76401131 | MS.gene073500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 76400126 | 76403553 | 76400126 | ID=MS.gene073500 |
| chr4.1 | mRNA | 76400126 | 76403553 | 76400126 | ID=MS.gene073500.t1;Parent=MS.gene073500 |
| chr4.1 | exon | 76400126 | 76400289 | 76400126 | ID=MS.gene073500.t1.exon1;Parent=MS.gene073500.t1 |
| chr4.1 | CDS | 76400126 | 76400289 | 76400126 | ID=cds.MS.gene073500.t1;Parent=MS.gene073500.t1 |
| chr4.1 | exon | 76401020 | 76401183 | 76401020 | ID=MS.gene073500.t1.exon2;Parent=MS.gene073500.t1 |
| chr4.1 | CDS | 76401020 | 76401183 | 76401020 | ID=cds.MS.gene073500.t1;Parent=MS.gene073500.t1 |
| chr4.1 | exon | 76401288 | 76401547 | 76401288 | ID=MS.gene073500.t1.exon3;Parent=MS.gene073500.t1 |
| chr4.1 | CDS | 76401288 | 76401547 | 76401288 | ID=cds.MS.gene073500.t1;Parent=MS.gene073500.t1 |
| chr4.1 | exon | 76402233 | 76402359 | 76402233 | ID=MS.gene073500.t1.exon4;Parent=MS.gene073500.t1 |
| chr4.1 | CDS | 76402233 | 76402359 | 76402233 | ID=cds.MS.gene073500.t1;Parent=MS.gene073500.t1 |
| chr4.1 | exon | 76403431 | 76403553 | 76403431 | ID=MS.gene073500.t1.exon5;Parent=MS.gene073500.t1 |
| chr4.1 | CDS | 76403431 | 76403553 | 76403431 | ID=cds.MS.gene073500.t1;Parent=MS.gene073500.t1 |
| Gene Sequence |
| Protein sequence |
