AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073606

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073606.t1 MTR_1g050448 97.067 375 11 0 1 375 1 375 0.0 768
MS.gene073606.t1 MTR_1g112210 75.069 361 85 3 19 375 23 382 0.0 582
MS.gene073606.t1 MTR_1g112210 72.853 361 80 4 19 375 23 369 0.0 553
MS.gene073606.t1 MTR_5g071350 39.601 351 189 5 45 375 52 399 1.63e-97 296
MS.gene073606.t1 MTR_2g015720 42.246 374 188 9 9 375 6 358 1.39e-95 289
MS.gene073606.t1 MTR_2g091175 42.560 336 173 7 47 375 44 366 1.38e-93 285
MS.gene073606.t1 MTR_7g093450 41.449 345 185 6 48 375 243 587 2.59e-93 291
MS.gene073606.t1 MTR_0136s0010 40.870 345 187 6 48 375 165 509 2.09e-91 284
MS.gene073606.t1 MTR_3g049330 42.900 331 170 7 53 375 31 350 2.39e-91 278
MS.gene073606.t1 MTR_2g073510 41.791 335 177 5 49 375 29 353 8.95e-91 277
MS.gene073606.t1 MTR_2g073500 43.413 334 161 9 53 375 29 345 1.14e-89 274
MS.gene073606.t1 MTR_3g464570 39.286 336 189 5 53 375 43 376 4.13e-89 273
MS.gene073606.t1 MTR_4g079700 40.483 331 175 7 53 375 47 363 1.25e-87 269
MS.gene073606.t1 MTR_4g088030 39.521 334 185 5 48 375 28 350 3.05e-87 268
MS.gene073606.t1 MTR_5g034810 39.093 353 194 8 31 375 13 352 6.26e-86 265
MS.gene073606.t1 MTR_4g126950 35.171 381 220 6 21 375 67 446 7.65e-86 268
MS.gene073606.t1 MTR_4g016940 39.826 344 188 8 51 375 84 427 2.62e-85 265
MS.gene073606.t1 MTR_5g059400 36.508 378 214 8 23 375 139 515 3.04e-85 268
MS.gene073606.t1 MTR_1g116130 36.508 378 214 8 23 375 139 515 3.04e-85 268
MS.gene073606.t1 MTR_4g087730 40.000 335 184 5 47 375 39 362 8.89e-85 262
MS.gene073606.t1 MTR_5g033800 38.123 341 195 5 51 375 143 483 3.38e-84 265
MS.gene073606.t1 MTR_7g109550 37.725 334 186 6 53 371 137 463 4.25e-84 263
MS.gene073606.t1 MTR_3g021090 39.823 339 182 6 40 371 21 344 7.87e-84 261
MS.gene073606.t1 MTR_3g035830 39.589 341 184 6 40 373 21 346 1.62e-82 256
MS.gene073606.t1 MTR_8g463790 41.399 343 177 9 53 375 71 409 2.07e-82 258
MS.gene073606.t1 MTR_3g021060 38.554 332 185 5 49 373 42 361 9.67e-81 251
MS.gene073606.t1 MTR_4g121560 37.135 342 194 6 53 375 114 453 1.72e-80 254
MS.gene073606.t1 MTR_4g014440 37.037 351 198 9 48 375 57 407 6.61e-80 251
MS.gene073606.t1 MTR_1g111010 39.881 336 169 11 50 375 29 341 7.61e-79 246
MS.gene073606.t1 MTR_8g069790 37.647 340 196 5 52 375 177 516 9.39e-78 249
MS.gene073606.t1 MTR_1g058380 35.980 403 221 11 1 375 1 394 1.90e-77 244
MS.gene073606.t1 MTR_7g068920 39.130 345 191 7 50 375 77 421 4.89e-77 244
MS.gene073606.t1 MTR_7g070060 34.336 399 226 11 10 375 14 409 6.12e-77 243
MS.gene073606.t1 MTR_3g070900 37.647 340 191 7 53 371 106 445 6.39e-77 244
MS.gene073606.t1 MTR_5g082880 37.681 345 191 8 51 371 163 507 1.12e-73 238
MS.gene073606.t1 MTR_2g022560 35.795 352 196 7 48 375 92 437 1.72e-72 233
MS.gene073606.t1 MTR_3g071650 35.673 342 201 7 53 375 89 430 6.62e-72 231
MS.gene073606.t1 MTR_5g083260 35.735 347 204 7 48 375 78 424 6.85e-72 231
MS.gene073606.t1 MTR_7g094750 35.311 354 206 6 43 375 81 432 6.37e-71 229
MS.gene073606.t1 MTR_4g014430 35.244 349 206 8 45 375 100 446 7.04e-70 226
MS.gene073606.t1 MTR_3g464570 38.603 272 153 4 116 375 3 272 1.06e-65 210
MS.gene073606.t1 MTR_3g090120 35.072 345 196 7 49 375 125 459 3.48e-62 206
MS.gene073606.t1 MTR_8g093530 32.853 347 207 7 44 375 81 416 4.60e-62 205
MS.gene073606.t1 MTR_5g033800 38.235 238 136 3 51 277 143 380 8.19e-58 192
MS.gene073606.t1 MTR_7g070060 35.540 287 163 7 10 277 14 297 6.23e-56 186
MS.gene073606.t1 MTR_7g070060 33.106 293 175 7 104 375 15 307 7.22e-53 178
MS.gene073606.t1 MTR_7g094750 34.677 248 149 3 43 277 81 328 9.04e-51 173
MS.gene073606.t1 MTR_8g027900 27.824 363 230 10 40 375 198 555 4.47e-41 152
MS.gene073606.t1 MTR_6g061710 31.117 376 204 16 40 375 154 514 6.93e-41 151
MS.gene073606.t1 MTR_1g076690 30.585 376 211 15 36 375 209 570 1.78e-39 148
MS.gene073606.t1 MTR_8g093870 30.027 373 217 14 35 375 112 472 2.76e-38 143
MS.gene073606.t1 MTR_5g035080 28.732 355 212 10 53 375 75 420 3.15e-38 142
MS.gene073606.t1 MTR_7g019120 29.692 357 210 13 49 375 75 420 6.38e-38 141
MS.gene073606.t1 MTR_5g069320 28.425 292 140 6 96 368 145 386 7.21e-38 140
MS.gene073606.t1 MTR_7g033230 28.000 350 225 7 51 375 262 609 2.40e-37 142
MS.gene073606.t1 MTR_4g092830 28.045 353 216 12 53 375 48 392 5.14e-37 139
MS.gene073606.t1 MTR_7g033230 28.000 350 225 7 51 375 332 679 9.78e-37 141
MS.gene073606.t1 MTR_8g104970 28.226 372 224 12 39 375 102 465 1.15e-36 139
MS.gene073606.t1 MTR_3g109840 28.329 353 213 9 53 375 73 415 3.54e-36 136
MS.gene073606.t1 MTR_4g125060 30.919 359 209 16 45 375 124 471 1.05e-35 136
MS.gene073606.t1 MTR_4g125060 30.919 359 209 16 45 375 163 510 1.07e-35 136
MS.gene073606.t1 MTR_5g035090 28.997 369 210 15 44 375 74 427 1.44e-35 135
MS.gene073606.t1 MTR_4g125060 30.919 359 209 16 45 375 192 539 1.78e-35 136
MS.gene073606.t1 MTR_8g099300 25.762 361 221 12 50 375 71 419 2.30e-34 131
MS.gene073606.t1 MTR_5g035150 29.132 357 219 12 48 375 80 431 6.11e-33 128
MS.gene073606.t1 MTR_6g016875 28.492 358 224 10 45 375 56 408 6.33e-33 127
MS.gene073606.t1 MTR_2g016060 28.453 362 196 13 57 375 59 400 1.67e-32 126
MS.gene073606.t1 MTR_6g016880 26.738 374 230 10 36 375 56 419 2.86e-32 126
MS.gene073606.t1 MTR_6g016240 27.500 400 239 16 8 371 28 412 1.60e-30 121
MS.gene073606.t1 MTR_5g035070 30.435 368 208 15 44 375 78 433 2.47e-30 120
MS.gene073606.t1 MTR_6g007777 28.142 366 206 15 48 375 111 457 2.40e-29 118
MS.gene073606.t1 MTR_7g019140 45.833 96 51 1 49 143 75 170 2.36e-23 95.9
MS.gene073606.t1 MTR_5g035120 34.532 139 86 2 9 142 27 165 4.02e-21 89.7
MS.gene073606.t1 MTR_3g021150 37.736 106 60 1 238 337 1 106 9.41e-18 79.0
MS.gene073606.t1 MTR_2g022580 32.773 119 68 2 112 218 2 120 3.01e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073606.t1 AT3G54260 62.368 380 132 6 1 375 1 374 1.26e-170 481
MS.gene073606.t1 AT2G31110 39.623 371 205 6 13 375 3 362 5.44e-93 283
MS.gene073606.t1 AT5G58600 39.710 345 191 6 44 375 60 400 2.17e-91 280
MS.gene073606.t1 AT5G06700 40.870 345 187 6 48 375 250 594 8.21e-91 285
MS.gene073606.t1 AT1G29050 39.714 350 185 5 41 375 40 378 2.54e-90 276
MS.gene073606.t1 AT2G30900 41.667 336 174 8 51 375 41 365 6.24e-89 273
MS.gene073606.t1 AT2G34070 38.576 337 189 5 46 375 58 383 4.60e-88 271
MS.gene073606.t1 AT2G42570 39.940 333 183 5 49 375 43 364 1.03e-87 270
MS.gene073606.t1 AT3G12060 40.000 345 190 5 48 375 191 535 2.96e-87 274
MS.gene073606.t1 AT5G20590 39.130 345 192 6 48 375 136 479 3.35e-86 270
MS.gene073606.t1 AT5G01360 38.728 346 190 8 51 375 34 378 7.42e-85 263
MS.gene073606.t1 AT5G49340 38.398 362 202 8 35 375 80 441 2.38e-84 264
MS.gene073606.t1 AT5G01360 38.728 346 190 8 51 375 90 434 3.12e-84 263
MS.gene073606.t1 AT3G62390 36.533 375 203 8 23 371 102 467 1.31e-83 262
MS.gene073606.t1 AT2G30010 37.838 370 197 8 35 375 31 396 2.40e-82 257
MS.gene073606.t1 AT2G30010 37.838 370 197 8 35 375 74 439 6.02e-82 257
MS.gene073606.t1 AT1G73140 40.058 342 183 9 53 375 67 405 4.30e-81 254
MS.gene073606.t1 AT2G40160 38.329 347 190 9 53 375 77 423 2.13e-80 253
MS.gene073606.t1 AT2G40160 38.040 347 191 9 53 375 77 423 7.18e-80 251
MS.gene073606.t1 AT3G14850 38.369 331 188 5 48 371 29 350 2.20e-79 248
MS.gene073606.t1 AT1G60790 36.364 352 200 9 46 375 183 532 2.36e-79 253
MS.gene073606.t1 AT1G78710 34.897 341 203 7 43 375 28 357 3.58e-79 247
MS.gene073606.t1 AT2G40150 37.176 347 191 7 52 371 70 416 7.97e-78 246
MS.gene073606.t1 AT3G55990 37.719 342 192 7 51 371 138 479 1.40e-77 247
MS.gene073606.t1 AT5G19160 36.486 370 203 8 32 375 81 444 5.82e-75 239
MS.gene073606.t1 AT2G38320 33.149 362 219 9 37 375 43 404 7.45e-75 238
MS.gene073606.t1 AT5G01620 33.842 393 236 11 3 375 61 449 1.26e-73 236
MS.gene073606.t1 AT5G01620 33.842 393 236 11 3 375 61 449 1.26e-73 236
MS.gene073606.t1 AT5G01620 34.293 382 228 10 13 375 80 457 1.53e-73 236
MS.gene073606.t1 AT3G11570 35.354 396 215 12 8 375 37 419 2.05e-72 232
MS.gene073606.t1 AT3G06080 36.752 351 196 7 48 375 98 445 2.06e-70 228
MS.gene073606.t1 AT5G06230 37.960 353 186 8 50 375 18 364 2.24e-70 225
MS.gene073606.t1 AT5G06230 38.095 357 180 10 50 375 59 405 3.25e-70 226
MS.gene073606.t1 AT3G11030 35.838 346 196 8 53 375 106 448 7.21e-70 226
MS.gene073606.t1 AT2G40320 34.307 411 223 13 3 375 21 422 8.48e-70 225
MS.gene073606.t1 AT2G31110 40.230 261 151 4 13 270 3 261 2.22e-67 214
MS.gene073606.t1 AT1G48880 35.294 340 188 9 53 375 115 439 1.27e-66 218
MS.gene073606.t1 AT2G38320 33.022 321 194 7 76 375 1 321 1.72e-65 211
MS.gene073606.t1 AT2G30900 43.043 230 126 5 51 277 41 268 2.41e-64 206
MS.gene073606.t1 AT5G58600 41.102 236 133 4 44 277 60 291 1.50e-63 205
MS.gene073606.t1 AT3G62390 37.132 272 154 4 23 277 102 373 4.68e-62 205
MS.gene073606.t1 AT2G34070 37.308 260 146 4 122 375 1 249 2.62e-60 195
MS.gene073606.t1 AT2G40160 41.102 236 128 6 53 277 77 312 3.37e-60 197
MS.gene073606.t1 AT5G20590 39.095 243 135 4 48 277 136 378 1.04e-56 190
MS.gene073606.t1 AT5G19160 37.066 259 147 4 32 277 81 336 1.59e-55 186
MS.gene073606.t1 AT1G78710 30.532 357 180 11 23 375 5 297 3.51e-53 178
MS.gene073606.t1 AT5G06230 38.057 247 134 4 50 277 59 305 8.50e-50 170
MS.gene073606.t1 AT3G14850 36.328 256 148 4 122 371 1 247 1.04e-49 168
MS.gene073606.t1 AT3G06080 35.802 243 143 3 48 277 98 340 2.32e-49 170
MS.gene073606.t1 AT2G31110 40.553 217 113 4 164 375 9 214 3.40e-49 165
MS.gene073606.t1 AT1G70230 32.203 354 188 14 53 375 79 411 1.18e-42 154
MS.gene073606.t1 AT4G25360 31.200 375 210 15 37 375 162 524 1.48e-41 153
MS.gene073606.t1 AT4G25360 31.200 375 210 15 37 375 162 524 1.48e-41 153
MS.gene073606.t1 AT1G01430 28.378 370 228 12 37 375 84 447 5.84e-41 150
MS.gene073606.t1 AT4G01080 28.448 348 216 11 49 371 87 426 5.65e-39 144
MS.gene073606.t1 AT5G51640 29.223 373 218 13 39 375 126 488 4.78e-38 143
MS.gene073606.t1 AT5G64020 28.771 358 214 15 53 375 57 408 2.73e-37 139
MS.gene073606.t1 AT4G11090 28.058 417 243 16 2 375 23 425 1.10e-36 138
MS.gene073606.t1 AT4G23790 27.822 381 214 13 34 371 61 423 3.92e-36 136
MS.gene073606.t1 AT5G64470 27.095 358 228 12 43 375 45 394 5.59e-36 135
MS.gene073606.t1 AT5G64470 26.923 364 227 12 43 375 45 400 2.11e-35 134
MS.gene073606.t1 AT2G37720 28.814 354 211 14 51 375 141 482 3.96e-35 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 92 457 4.13e-35 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 168 533 1.05e-34 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 186 551 1.09e-34 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 186 551 1.09e-34 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 186 551 1.09e-34 134
MS.gene073606.t1 AT5G20680 27.013 385 227 17 26 375 186 551 1.09e-34 134
MS.gene073606.t1 AT5G15900 28.926 363 224 11 40 375 54 409 3.43e-34 131
MS.gene073606.t1 AT5G15900 28.926 363 224 11 40 375 73 428 4.48e-34 131
MS.gene073606.t1 AT5G15890 28.969 359 208 11 47 375 181 522 1.09e-33 131
MS.gene073606.t1 AT3G28150 27.941 408 226 19 8 375 31 410 6.65e-33 127
MS.gene073606.t1 AT3G02440 27.841 352 215 12 53 375 127 468 3.39e-32 126
MS.gene073606.t1 AT3G02440 27.841 352 215 12 53 375 135 476 3.67e-32 126
MS.gene073606.t1 AT2G14530 27.424 361 214 13 50 375 59 406 2.60e-31 123
MS.gene073606.t1 AT5G64470 26.953 256 168 7 43 281 45 298 5.77e-24 101
MS.gene073606.t1 AT5G64470 26.953 256 168 7 43 281 45 298 8.59e-24 100

Find 85 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGGTGTGCCTGATATT+TGG 0.189016 1.1:-34578454 MS.gene073606:CDS
TGCTAGATTCTCTATTGTTT+TGG 0.195292 1.1:+34581323 None:intergenic
CTATTCTTTGTTTCTCATCT+TGG 0.240185 1.1:+34578507 None:intergenic
TAATACCAACTGGTAGAAAA+AGG 0.249328 1.1:-34579764 MS.gene073606:CDS
GGTTTCTTATGTAGGGAAAA+TGG 0.249585 1.1:-34578716 MS.gene073606:intron
CTTATGGTTGCTTATCAAAA+AGG 0.263528 1.1:-34579052 MS.gene073606:CDS
CCACTGCACATTATCTCTTC+TGG 0.264239 1.1:-34581398 MS.gene073606:CDS
TTTGATGCACTAAGGTTTCT+TGG 0.268531 1.1:-34579873 MS.gene073606:CDS
GCTGAAGAAAATGAGGTTTC+CGG 0.326494 1.1:-34578606 MS.gene073606:CDS
ATTCCTCTGATTGCAGTCAT+TGG 0.349039 1.1:-34578481 MS.gene073606:CDS
GTTCAGGAGCATGTTGTTGC+AGG 0.359962 1.1:+34578651 None:intergenic
AACATCTCATTCCAAATATC+AGG 0.370214 1.1:+34578443 None:intergenic
GCATGTCACCAAGGCATAAC+AGG 0.372725 1.1:-34578961 MS.gene073606:intron
TGGACAATGTTAACATCATC+AGG 0.381677 1.1:+34581343 None:intergenic
CACTTCTCATAATCAGAATC+TGG 0.390203 1.1:+34581190 None:intergenic
AGAGAAAGAAAATGAGTCAT+AGG 0.394269 1.1:+34581442 None:intergenic
AAACAAGAGAGTCTTACATT+TGG 0.395362 1.1:-34579558 MS.gene073606:CDS
TCTTTGTTTCTCATCTTGGC+TGG 0.397185 1.1:+34578511 None:intergenic
CATGCTTCTGAAAATGACTT+TGG 0.398420 1.1:+34578979 None:intergenic
ATTGAATGGAAGGCCATTGC+AGG 0.414061 1.1:+34579726 None:intergenic
TGCAGTCATTGGTGCCTCCC+TGG 0.417455 1.1:-34578470 MS.gene073606:CDS
ATGTCTTCATTACCATTGAA+TGG 0.434469 1.1:+34579712 None:intergenic
TCATTGTCGTAATATCTTGC+AGG 0.436722 1.1:+34578579 None:intergenic
GCAGTTACTTGTCAAAAGAA+TGG 0.450896 1.1:-34581217 MS.gene073606:CDS
TGGAGAACAACTAAAGGTTC+AGG 0.465074 1.1:+34578635 None:intergenic
GTAACTGCAGTACTAAGATA+AGG 0.467342 1.1:+34581232 None:intergenic
TTCCAAATATCAGGCACACC+AGG 0.469582 1.1:+34578452 None:intergenic
ATGGACATCCATCTGTGTAT+AGG 0.470222 1.1:-34578541 MS.gene073606:CDS
TCTGTAGGTTTGATGCACTA+AGG 0.472754 1.1:-34579881 MS.gene073606:intron
CAAGATGAGAAACAAAGAAT+AGG 0.477046 1.1:-34578506 MS.gene073606:CDS
TGCAATGGCCTTCCATTCAA+TGG 0.483402 1.1:-34579724 MS.gene073606:intron
GTACTAAGATAAGGGCAGTT+AGG 0.483942 1.1:+34581241 None:intergenic
CAGTTACTTGTCAAAAGAAT+GGG 0.497842 1.1:-34581216 MS.gene073606:CDS
GTACAAGGTGTAATACCAAC+TGG 0.502784 1.1:-34579774 MS.gene073606:CDS
TAACTGCAGTACTAAGATAA+GGG 0.511515 1.1:+34581233 None:intergenic
TCGAGGAGAATGCAAAGTAT+TGG 0.512927 1.1:-34579529 MS.gene073606:CDS
CTGATTATGAGAAGTGGAAG+TGG 0.515175 1.1:-34581183 MS.gene073606:CDS
GTAATATCTTGCAGGTATAC+CGG 0.515454 1.1:+34578587 None:intergenic
GAAAGCCAACATCATCTTGT+GGG 0.520387 1.1:+34581374 None:intergenic
CTTCATTACCATTGAATGGA+AGG 0.525435 1.1:+34579716 None:intergenic
TATTTGATTCAGCTCAGTGG+TGG 0.527529 1.1:-34579487 MS.gene073606:CDS
TTCAATAATGAGAAATCAGT+GGG 0.529697 1.1:-34579814 MS.gene073606:CDS
TCTTATGTAGGGAAAATGGT+TGG 0.530513 1.1:-34578712 MS.gene073606:intron
CTGGACCCACAAGATGATGT+TGG 0.536816 1.1:-34581379 MS.gene073606:CDS
TTCTTCAGTTCAACTAACAA+TGG 0.540448 1.1:+34579590 None:intergenic
CAAGTGGTTGTTCTATTCCA+AGG 0.549525 1.1:-34581156 MS.gene073606:intron
ACTGAGTACATGGGCAAGGT+GGG 0.549939 1.1:-34579029 MS.gene073606:CDS
AGGAAGAGAATCATGTTGGT+GGG 0.564160 1.1:-34579840 MS.gene073606:CDS
ATGAGTCATAGGTGTTGCCA+TGG 0.568049 1.1:+34581453 None:intergenic
ACTCCTTGGAGAACAACTAA+AGG 0.569021 1.1:+34578629 None:intergenic
GGAAGGCCATTGCAGGTCCA+TGG 0.570480 1.1:+34579733 None:intergenic
GACCTACCATGGACCTGCAA+TGG 0.573638 1.1:-34579739 MS.gene073606:CDS
GAGAAGGAAGAGAATCATGT+TGG 0.573655 1.1:-34579844 MS.gene073606:CDS
CTTACATTTGGATTTGATCG+AGG 0.576704 1.1:-34579546 MS.gene073606:CDS
AAGGAGTGCTGAAGAAAATG+AGG 0.580576 1.1:-34578613 MS.gene073606:CDS
GAGTACATGGGCAAGGTGGG+TGG 0.582998 1.1:-34579026 MS.gene073606:CDS
TCTTTAGTATGCTTAGTACA+AGG 0.583313 1.1:-34579789 MS.gene073606:CDS
ATGACTGCCTTACGCAGAGA+TGG 0.588976 1.1:-34578560 MS.gene073606:CDS
GACTGAGTACATGGGCAAGG+TGG 0.591699 1.1:-34579030 MS.gene073606:CDS
TTGTATTTGATTCAGCTCAG+TGG 0.592724 1.1:-34579490 MS.gene073606:CDS
AGAAAGCCAACATCATCTTG+TGG 0.596913 1.1:+34581373 None:intergenic
GAACCTTTAGTTGTTCTCCA+AGG 0.596967 1.1:-34578632 MS.gene073606:CDS
TGGATGTCCATCTCTGCGTA+AGG 0.597057 1.1:+34578553 None:intergenic
CAGATTCTGATTATGAGAAG+TGG 0.598360 1.1:-34581189 MS.gene073606:CDS
GTTGCCTTCCTATACACAGA+TGG 0.600713 1.1:+34578533 None:intergenic
CTTGGAATAGAACAACCACT+TGG 0.601949 1.1:+34581157 None:intergenic
AATGACTGCAATCAGAGGAA+TGG 0.604666 1.1:+34578483 None:intergenic
GGCCATTGCAGGTCCATGGT+AGG 0.611844 1.1:+34579737 None:intergenic
AAGGAAGAGAATCATGTTGG+TGG 0.613045 1.1:-34579841 MS.gene073606:CDS
ATATGGTACCTGTTATGCCT+TGG 0.616350 1.1:+34578953 None:intergenic
ATTCAATAATGAGAAATCAG+TGG 0.617219 1.1:-34579815 MS.gene073606:CDS
TCCAAATATCAGGCACACCA+GGG 0.626960 1.1:+34578453 None:intergenic
GCACCAATGACTGCAATCAG+AGG 0.627161 1.1:+34578478 None:intergenic
ACATCCATCTGTGTATAGGA+AGG 0.630374 1.1:-34578537 MS.gene073606:CDS
GAGAATGCAAAGTATTGGAG+AGG 0.631125 1.1:-34579524 MS.gene073606:CDS
ATACAGGTGGGATTACTACA+AGG 0.634100 1.1:-34579104 MS.gene073606:intron
ACTGAGCTGAATCAAATACA+AGG 0.634640 1.1:+34579492 None:intergenic
GGGCAGTTAGGATCATAAAG+AGG 0.636819 1.1:+34581253 None:intergenic
AGGTGGGATTACTACAAGGA+GGG 0.648410 1.1:-34579100 MS.gene073606:CDS
AAGGACTGAGTACATGGGCA+AGG 0.650632 1.1:-34579033 MS.gene073606:CDS
CCAGAAGAGATAATGTGCAG+TGG 0.657294 1.1:+34581398 None:intergenic
TTACTTGTCAAAAGAATGGG+AGG 0.658568 1.1:-34581213 MS.gene073606:CDS
CAGGTGGGATTACTACAAGG+AGG 0.703135 1.1:-34579101 MS.gene073606:CDS
AAATATCAGGCACACCAGGG+AGG 0.749580 1.1:+34578456 None:intergenic
AAGTGGAAGTGGAAGCCAAG+TGG 0.762111 1.1:-34581172 MS.gene073606:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATATAAATTTTATCTA+AGG - chr1.1:34578910-34578929 MS.gene073606:intron 10.0%
!!! TTTTTTTTATAATCTTTAAC+AGG - chr1.1:34578991-34579010 MS.gene073606:CDS 10.0%
!! AGTTCTTAAAATAAGTAAAA+TGG + chr1.1:34579836-34579855 None:intergenic 15.0%
!! CATTTACTTAAATACAAATT+TGG + chr1.1:34579919-34579938 None:intergenic 15.0%
!! GGCATATAAAAATATATATA+TGG + chr1.1:34580945-34580964 None:intergenic 15.0%
!!! AACTTTGTTTATCAATTAAA+TGG + chr1.1:34579057-34579076 None:intergenic 15.0%
!!! AGTATATTCTAGATTTTTTA+GGG - chr1.1:34579343-34579362 MS.gene073606:intron 15.0%
!!! CTCAAATTTTAATTTAATGA+TGG + chr1.1:34578850-34578869 None:intergenic 15.0%
!!! TAGTATATTCTAGATTTTTT+AGG - chr1.1:34579342-34579361 MS.gene073606:intron 15.0%
!! AAATGCCAAAAAACAATTAT+AGG + chr1.1:34581124-34581143 None:intergenic 20.0%
!! AGATTTATCATTCAAATTTG+TGG - chr1.1:34579377-34579396 MS.gene073606:intron 20.0%
!! CTTAAAATAAGTAAAATGGA+AGG + chr1.1:34579832-34579851 None:intergenic 20.0%
!!! AAAATGACTTTGGTTTTTTT+AGG + chr1.1:34580892-34580911 None:intergenic 20.0%
!!! AAATGACTTTGGTTTTTTTA+GGG + chr1.1:34580891-34580910 None:intergenic 20.0%
!!! ATTGAGTTCTAAAAAAAACA+TGG - chr1.1:34579268-34579287 MS.gene073606:intron 20.0%
!!! GTATATTCTAGATTTTTTAG+GGG - chr1.1:34579344-34579363 MS.gene073606:intron 20.0%
!!! TTCACTAAACTTTTTAAAAG+AGG - chr1.1:34580696-34580715 MS.gene073606:intron 20.0%
!!! TTGTGTTATTGTAATTTGTA+CGG - chr1.1:34579555-34579574 MS.gene073606:CDS 20.0%
!!! TTTCACCTATAATTGTTTTT+TGG - chr1.1:34581116-34581135 MS.gene073606:intron 20.0%
!!! TTTTTTTAGAACTCAATATC+CGG + chr1.1:34579265-34579284 None:intergenic 20.0%
! AAAATAAGTAAAATGGAAGG+TGG + chr1.1:34579829-34579848 None:intergenic 25.0%
! AAACTATCTTAGAAAGCTTA+TGG - chr1.1:34580633-34580652 MS.gene073606:intron 25.0%
! AACTATCTTAGAAAGCTTAT+GGG - chr1.1:34580634-34580653 MS.gene073606:intron 25.0%
! ACTAAGTGAAATTGATTACA+TGG - chr1.1:34581015-34581034 MS.gene073606:intron 25.0%
! ATTCAATAATGAGAAATCAG+TGG - chr1.1:34580063-34580082 MS.gene073606:intron 25.0%
! GTAAATGAATTTCAACACTT+TGG - chr1.1:34579932-34579951 MS.gene073606:intron 25.0%
! GTGATGTCAATAATTTACAA+AGG + chr1.1:34580220-34580239 None:intergenic 25.0%
! GTGTATAGAAGAAAACAAAA+AGG + chr1.1:34578764-34578783 None:intergenic 25.0%
! GTTCTTGAAATTGTAAATGT+CGG + chr1.1:34579897-34579916 None:intergenic 25.0%
! TATAGAAGAAAACAAAAAGG+TGG + chr1.1:34578761-34578780 None:intergenic 25.0%
! TGATTTCCGATAGAATATTA+TGG + chr1.1:34581052-34581071 None:intergenic 25.0%
! TGTCAATAATTTACAAAGGA+AGG + chr1.1:34580216-34580235 None:intergenic 25.0%
! TTCAATAATGAGAAATCAGT+GGG - chr1.1:34580064-34580083 MS.gene073606:intron 25.0%
! TTTATCAATTAAATGGATGC+AGG + chr1.1:34579050-34579069 None:intergenic 25.0%
! TTTGTGGATTCTTATTAATG+TGG - chr1.1:34579767-34579786 MS.gene073606:CDS 25.0%
!! ACAAATATTTTCAGCCAAAA+TGG + chr1.1:34579752-34579771 None:intergenic 25.0%
!! AGACATCAATTGAGTTTTTA+TGG - chr1.1:34580262-34580281 MS.gene073606:intron 25.0%
!! GACAAAGATAAACAAGTTTT+AGG + chr1.1:34580966-34580985 None:intergenic 25.0%
!! GACATCAATTGAGTTTTTAT+GGG - chr1.1:34580263-34580282 MS.gene073606:intron 25.0%
!! TATTGTAATTTGTACGGATA+TGG - chr1.1:34579561-34579580 MS.gene073606:CDS 25.0%
!!! AGTTCTAAAAAAAACATGGT+TGG - chr1.1:34579272-34579291 MS.gene073606:intron 25.0%
!!! ATTTTGGCTGAAAATATTTG+TGG - chr1.1:34579751-34579770 MS.gene073606:CDS 25.0%
!!! TTGAAATTTTAAGTGCTATG+AGG + chr1.1:34579020-34579039 None:intergenic 25.0%
!!! TTTTTTATCAACTCTGAGTA+GGG - chr1.1:34579435-34579454 MS.gene073606:intron 25.0%
AAACAAGAGAGTCTTACATT+TGG - chr1.1:34580320-34580339 MS.gene073606:intron 30.0%
AACATCTCATTCCAAATATC+AGG + chr1.1:34581438-34581457 None:intergenic 30.0%
AAGTTATGCATATAGGAGAT+GGG + chr1.1:34579520-34579539 None:intergenic 30.0%
AATAAGCCAAAATCAGCTTA+CGG - chr1.1:34580657-34580676 MS.gene073606:intron 30.0%
AATACCAACTGGTAGAAAAA+GGG - chr1.1:34580115-34580134 MS.gene073606:intron 30.0%
ACGACACCATAATATTCTAT+CGG - chr1.1:34581043-34581062 MS.gene073606:intron 30.0%
ACGAGGGAAATTAAGAAAAT+GGG + chr1.1:34580489-34580508 None:intergenic 30.0%
ACTATGGAAGTTATGCATAT+AGG + chr1.1:34579527-34579546 None:intergenic 30.0%
AGAGAAAGAAAATGAGTCAT+AGG + chr1.1:34578439-34578458 None:intergenic 30.0%
ATGTCTTCATTACCATTGAA+TGG + chr1.1:34580169-34580188 None:intergenic 30.0%
ATTAGATCTCTCGAATTAGT+CGG - chr1.1:34579231-34579250 MS.gene073606:intron 30.0%
CAAGATGAGAAACAAAGAAT+AGG - chr1.1:34581372-34581391 MS.gene073606:CDS 30.0%
CAGTTACTTGTCAAAAGAAT+GGG - chr1.1:34578662-34578681 MS.gene073606:CDS 30.0%
CTTATGGTTGCTTATCAAAA+AGG - chr1.1:34580826-34580845 MS.gene073606:intron 30.0%
GACTAACACTTACAATTTCA+GGG + chr1.1:34579636-34579655 None:intergenic 30.0%
GATCAAAAACATGACTCTTA+TGG - chr1.1:34580810-34580829 MS.gene073606:intron 30.0%
GATCTCAAATCAACATCATT+AGG + chr1.1:34579096-34579115 None:intergenic 30.0%
GATTCCTTCTGTATCAATTT+CGG - chr1.1:34579147-34579166 MS.gene073606:intron 30.0%
TAACACAAAAACCATGACTA+TGG + chr1.1:34579543-34579562 None:intergenic 30.0%
TAACTGCAGTACTAAGATAA+GGG + chr1.1:34578648-34578667 None:intergenic 30.0%
TAATACCAACTGGTAGAAAA+AGG - chr1.1:34580114-34580133 MS.gene073606:intron 30.0%
TAATCTCATTGTTCACTTGT+GGG + chr1.1:34579215-34579234 None:intergenic 30.0%
TACGAGGGAAATTAAGAAAA+TGG + chr1.1:34580490-34580509 None:intergenic 30.0%
TCTTTAGTATGCTTAGTACA+AGG - chr1.1:34580089-34580108 MS.gene073606:intron 30.0%
TGACTAACACTTACAATTTC+AGG + chr1.1:34579637-34579656 None:intergenic 30.0%
TTCTTCAGTTCAACTAACAA+TGG + chr1.1:34580291-34580310 None:intergenic 30.0%
! AGTTGCCTTTTCATGAAATT+TGG + chr1.1:34579669-34579688 None:intergenic 30.0%
! ATTTTCTTAATTTCCCTCGT+AGG - chr1.1:34580489-34580508 MS.gene073606:intron 30.0%
! CTATTCTTTGTTTCTCATCT+TGG + chr1.1:34581374-34581393 None:intergenic 30.0%
! GGATTAAAATCTGAGATCAA+TGG + chr1.1:34579499-34579518 None:intergenic 30.0%
! GTTGCCTTTTCATGAAATTT+GGG + chr1.1:34579668-34579687 None:intergenic 30.0%
! TAAAATCTGAGATCAATGGA+GGG + chr1.1:34579495-34579514 None:intergenic 30.0%
! TGCTAGATTCTCTATTGTTT+TGG + chr1.1:34578558-34578577 None:intergenic 30.0%
! TGTTAAGATTTAGAGCTCAA+TGG + chr1.1:34581093-34581112 None:intergenic 30.0%
! TTAAAATCTGAGATCAATGG+AGG + chr1.1:34579496-34579515 None:intergenic 30.0%
! TTGCCTTTTCATGAAATTTG+GGG + chr1.1:34579667-34579686 None:intergenic 30.0%
! TTTTTATCAACTCTGAGTAG+GGG - chr1.1:34579436-34579455 MS.gene073606:intron 30.0%
!!! GTTTTTTATCAACTCTGAGT+AGG - chr1.1:34579434-34579453 MS.gene073606:intron 30.0%
AATCTCATTGTTCACTTGTG+GGG + chr1.1:34579214-34579233 None:intergenic 35.0%
AATGGGATGATATGAAGAGA+AGG + chr1.1:34580472-34580491 None:intergenic 35.0%
ACTGAGCTGAATCAAATACA+AGG + chr1.1:34580389-34580408 None:intergenic 35.0%
ACTTAGTGAGATGTAAGACT+TGG + chr1.1:34581002-34581021 None:intergenic 35.0%
AGCTAGTTAAGTTTACAAGC+AGG + chr1.1:34579970-34579989 None:intergenic 35.0%
AGTCCCCAAATTTCATGAAA+AGG - chr1.1:34579661-34579680 MS.gene073606:intron 35.0%
ATCAAAAAGGACTGAGTACA+TGG - chr1.1:34580839-34580858 MS.gene073606:intron 35.0%
ATGCATAACTTCCATAGTCA+TGG - chr1.1:34579529-34579548 MS.gene073606:CDS 35.0%
ATGTTAACATGTACTCTCAG+TGG - chr1.1:34578872-34578891 MS.gene073606:intron 35.0%
CACTTCTCATAATCAGAATC+TGG + chr1.1:34578691-34578710 None:intergenic 35.0%
CAGATTCTGATTATGAGAAG+TGG - chr1.1:34578689-34578708 MS.gene073606:CDS 35.0%
CTAATCTCATTGTTCACTTG+TGG + chr1.1:34579216-34579235 None:intergenic 35.0%
CTTACATTTGGATTTGATCG+AGG - chr1.1:34580332-34580351 MS.gene073606:intron 35.0%
CTTCATTACCATTGAATGGA+AGG + chr1.1:34580165-34580184 None:intergenic 35.0%
CTTTCTTGACTAATACAGGT+GGG - chr1.1:34580762-34580781 MS.gene073606:intron 35.0%
GAAGTTATGCATATAGGAGA+TGG + chr1.1:34579521-34579540 None:intergenic 35.0%
GCAGTTACTTGTCAAAAGAA+TGG - chr1.1:34578661-34578680 MS.gene073606:CDS 35.0%
GCTTCTTTCTTGACTAATAC+AGG - chr1.1:34580758-34580777 MS.gene073606:intron 35.0%
GGTTTCTTATGTAGGGAAAA+TGG - chr1.1:34581162-34581181 MS.gene073606:CDS 35.0%
GGTTTCTTGGAAAAATGAGA+AGG - chr1.1:34580018-34580037 MS.gene073606:intron 35.0%
GTAACTGCAGTACTAAGATA+AGG + chr1.1:34578649-34578668 None:intergenic 35.0%
GTAATATCTTGCAGGTATAC+CGG + chr1.1:34581294-34581313 None:intergenic 35.0%
TACTATGACTACTTGTGTCA+AGG + chr1.1:34579327-34579346 None:intergenic 35.0%
TCAAAAAGGACTGAGTACAT+GGG - chr1.1:34580840-34580859 MS.gene073606:intron 35.0%
TCATTGTCGTAATATCTTGC+AGG + chr1.1:34581302-34581321 None:intergenic 35.0%
TCTTATGTAGGGAAAATGGT+TGG - chr1.1:34581166-34581185 MS.gene073606:CDS 35.0%
TCTTTCTTGACTAATACAGG+TGG - chr1.1:34580761-34580780 MS.gene073606:intron 35.0%
TGGACAATGTTAACATCATC+AGG + chr1.1:34578538-34578557 None:intergenic 35.0%
TTACTTGTCAAAAGAATGGG+AGG - chr1.1:34578665-34578684 MS.gene073606:CDS 35.0%
TTGTATTTGATTCAGCTCAG+TGG - chr1.1:34580388-34580407 MS.gene073606:intron 35.0%
TTTGATGCACTAAGGTTTCT+TGG - chr1.1:34580005-34580024 MS.gene073606:intron 35.0%
! AACTAGCTTATTACCTCTGT+AGG - chr1.1:34579982-34580001 MS.gene073606:intron 35.0%
! AAGATTTAGAGCTCAATGGT+TGG + chr1.1:34581089-34581108 None:intergenic 35.0%
! ATTAAGTAGTTTGTCCTACG+AGG + chr1.1:34580506-34580525 None:intergenic 35.0%
! ATTGACATCACAGTTTTCTC+TGG - chr1.1:34580229-34580248 MS.gene073606:intron 35.0%
! CATGCTTCTGAAAATGACTT+TGG + chr1.1:34580902-34580921 None:intergenic 35.0%
! CGACTTTTCTGTTGGAAAAT+GGG - chr1.1:34578585-34578604 MS.gene073606:CDS 35.0%
! CTTAGAGTGTGCTTTTCTTA+AGG - chr1.1:34579115-34579134 MS.gene073606:intron 35.0%
! GTGGATGATGAGTTTTTGAA+TGG - chr1.1:34579591-34579610 MS.gene073606:CDS 35.0%
! TTAAGTAGTTTGTCCTACGA+GGG + chr1.1:34580505-34580524 None:intergenic 35.0%
!!! TCCTTACGAGCTTGTTTTAT+CGG + chr1.1:34580424-34580443 None:intergenic 35.0%
!!! TGTAAGACTCTCTTGTTTTC+TGG + chr1.1:34580318-34580337 None:intergenic 35.0%
AAGGAAGAGAATCATGTTGG+TGG - chr1.1:34580037-34580056 MS.gene073606:intron 40.0%
AATGACTGCAATCAGAGGAA+TGG + chr1.1:34581398-34581417 None:intergenic 40.0%
ACATCCATCTGTGTATAGGA+AGG - chr1.1:34581341-34581360 MS.gene073606:CDS 40.0%
ACTCCTTGGAGAACAACTAA+AGG + chr1.1:34581252-34581271 None:intergenic 40.0%
AGAAAGCCAACATCATCTTG+TGG + chr1.1:34578508-34578527 None:intergenic 40.0%
AGCGATTGGGTTTCTTATGT+AGG - chr1.1:34581154-34581173 MS.gene073606:intron 40.0%
AGGAAGAGAATCATGTTGGT+GGG - chr1.1:34580038-34580057 MS.gene073606:intron 40.0%
ATACAGGTGGGATTACTACA+AGG - chr1.1:34580774-34580793 MS.gene073606:intron 40.0%
ATATGGTACCTGTTATGCCT+TGG + chr1.1:34580928-34580947 None:intergenic 40.0%
ATCTCATTGTTCACTTGTGG+GGG + chr1.1:34579213-34579232 None:intergenic 40.0%
ATGGACATCCATCTGTGTAT+AGG - chr1.1:34581337-34581356 MS.gene073606:CDS 40.0%
ATTCCTCTGATTGCAGTCAT+TGG - chr1.1:34581397-34581416 MS.gene073606:CDS 40.0%
ATTTCACTGTCTCTAGCGAT+TGG - chr1.1:34581140-34581159 MS.gene073606:intron 40.0%
CAAAATCAGCTTACGGACAT+GGG - chr1.1:34580664-34580683 MS.gene073606:intron 40.0%
CAAGTGGTTGTTCTATTCCA+AGG - chr1.1:34578722-34578741 MS.gene073606:intron 40.0%
CTGATTATGAGAAGTGGAAG+TGG - chr1.1:34578695-34578714 MS.gene073606:CDS 40.0%
CTTGGAATAGAACAACCACT+TGG + chr1.1:34578724-34578743 None:intergenic 40.0%
GAAAGCCAACATCATCTTGT+GGG + chr1.1:34578507-34578526 None:intergenic 40.0%
GAACCTTTAGTTGTTCTCCA+AGG - chr1.1:34581246-34581265 MS.gene073606:CDS 40.0%
GAGAAGGAAGAGAATCATGT+TGG - chr1.1:34580034-34580053 MS.gene073606:intron 40.0%
GCGATTGGGTTTCTTATGTA+GGG - chr1.1:34581155-34581174 MS.gene073606:intron 40.0%
GCTGAAGAAAATGAGGTTTC+CGG - chr1.1:34581272-34581291 MS.gene073606:CDS 40.0%
GTACAAGGTGTAATACCAAC+TGG - chr1.1:34580104-34580123 MS.gene073606:intron 40.0%
GTACTAAGATAAGGGCAGTT+AGG + chr1.1:34578640-34578659 None:intergenic 40.0%
TATTTGATTCAGCTCAGTGG+TGG - chr1.1:34580391-34580410 MS.gene073606:intron 40.0%
TCCACCGAAATTGATACAGA+AGG + chr1.1:34579154-34579173 None:intergenic 40.0%
TCCGATAAAACAAGCTCGTA+AGG - chr1.1:34580420-34580439 MS.gene073606:intron 40.0%
TCCTTCTGTATCAATTTCGG+TGG - chr1.1:34579150-34579169 MS.gene073606:intron 40.0%
TCGAGGAGAATGCAAAGTAT+TGG - chr1.1:34580349-34580368 MS.gene073606:intron 40.0%
TCTCGAATTAGTCGGTCTTT+AGG - chr1.1:34579239-34579258 MS.gene073606:intron 40.0%
TCTGTAGGTTTGATGCACTA+AGG - chr1.1:34579997-34580016 MS.gene073606:intron 40.0%
TGGAGAACAACTAAAGGTTC+AGG + chr1.1:34581246-34581265 None:intergenic 40.0%
TGTTGTTGCAGGCTGAAAAA+TGG + chr1.1:34581219-34581238 None:intergenic 40.0%
TTAGTGCATCAAACCTACAG+AGG + chr1.1:34579998-34580017 None:intergenic 40.0%
TTTCACTGTCTCTAGCGATT+GGG - chr1.1:34581141-34581160 MS.gene073606:intron 40.0%
! AAGAGATGCGACTTTTCTGT+TGG - chr1.1:34578577-34578596 MS.gene073606:CDS 40.0%
! ACAACTCACAAGGACCATTT+TGG - chr1.1:34579735-34579754 MS.gene073606:CDS 40.0%
! ACATCACAGTTTTCTCTGGT+AGG - chr1.1:34580233-34580252 MS.gene073606:intron 40.0%
! GCGACTTTTCTGTTGGAAAA+TGG - chr1.1:34578584-34578603 MS.gene073606:CDS 40.0%
! TCATTTTCTTCAGCACTCCT+TGG + chr1.1:34581266-34581285 None:intergenic 40.0%
! TCTTTGTTTCTCATCTTGGC+TGG + chr1.1:34581370-34581389 None:intergenic 40.0%
! TTAGAGCTCAATGGTTGGTT+TGG + chr1.1:34581084-34581103 None:intergenic 40.0%
!! AAGGAGTGCTGAAGAAAATG+AGG - chr1.1:34581265-34581284 MS.gene073606:CDS 40.0%
!! GAGAATGCAAAGTATTGGAG+AGG - chr1.1:34580354-34580373 MS.gene073606:intron 40.0%
!! TTTTCAGAAGCATGTCACCA+AGG - chr1.1:34580908-34580927 MS.gene073606:intron 40.0%
AGAAAAAGGGTGACCTACCA+TGG - chr1.1:34580128-34580147 MS.gene073606:intron 45.0%
AGGTGGGATTACTACAAGGA+GGG - chr1.1:34580778-34580797 MS.gene073606:intron 45.0%
ATTGAATGGAAGGCCATTGC+AGG + chr1.1:34580155-34580174 None:intergenic 45.0%
CCAAAATCAGCTTACGGACA+TGG - chr1.1:34580663-34580682 MS.gene073606:intron 45.0%
CCACTGCACATTATCTCTTC+TGG - chr1.1:34578480-34578499 MS.gene073606:CDS 45.0%
CCAGAAGAGATAATGTGCAG+TGG + chr1.1:34578483-34578502 None:intergenic 45.0%
GAATTAGTCGGTCTTTAGGC+CGG - chr1.1:34579243-34579262 MS.gene073606:intron 45.0%
GGGATGATATGAAGAGAAGG+TGG + chr1.1:34580469-34580488 None:intergenic 45.0%
GGGCAGTTAGGATCATAAAG+AGG + chr1.1:34578628-34578647 None:intergenic 45.0%
GTACGGATATGGTAAGCTTG+TGG - chr1.1:34579572-34579591 MS.gene073606:CDS 45.0%
GTTGCCTTCCTATACACAGA+TGG + chr1.1:34581348-34581367 None:intergenic 45.0%
TCCAAATATCAGGCACACCA+GGG + chr1.1:34581428-34581447 None:intergenic 45.0%
TGCAATGGCCTTCCATTCAA+TGG - chr1.1:34580154-34580173 MS.gene073606:intron 45.0%
TGCAGGCTGAAAAATGGTAG+AGG + chr1.1:34581213-34581232 None:intergenic 45.0%
TTCCAAATATCAGGCACACC+AGG + chr1.1:34581429-34581448 None:intergenic 45.0%
TTGCGAAGTCACAACTCACA+AGG - chr1.1:34579725-34579744 MS.gene073606:CDS 45.0%
! ATCTGAGATCAATGGAGGGT+TGG + chr1.1:34579491-34579510 None:intergenic 45.0%
! GTCACCCTTTTTCTACCAGT+TGG + chr1.1:34580122-34580141 None:intergenic 45.0%
!! CCATGTCCGTAAGCTGATTT+TGG + chr1.1:34580666-34580685 None:intergenic 45.0%
AAATATCAGGCACACCAGGG+AGG + chr1.1:34581425-34581444 None:intergenic 50.0%
AAGGACTGAGTACATGGGCA+AGG - chr1.1:34580845-34580864 MS.gene073606:intron 50.0%
AAGTGGAAGTGGAAGCCAAG+TGG - chr1.1:34578706-34578725 MS.gene073606:intron 50.0%
ACTGAGTACATGGGCAAGGT+GGG - chr1.1:34580849-34580868 MS.gene073606:intron 50.0%
ATCAACTCTGAGTAGGGGAG+TGG - chr1.1:34579441-34579460 MS.gene073606:intron 50.0%
ATGACTGCCTTACGCAGAGA+TGG - chr1.1:34581318-34581337 MS.gene073606:CDS 50.0%
CAGGTGGGATTACTACAAGG+AGG - chr1.1:34580777-34580796 MS.gene073606:intron 50.0%
CTGGACCCACAAGATGATGT+TGG - chr1.1:34578499-34578518 MS.gene073606:CDS 50.0%
GCACCAATGACTGCAATCAG+AGG + chr1.1:34581403-34581422 None:intergenic 50.0%
GCATGTCACCAAGGCATAAC+AGG - chr1.1:34580917-34580936 MS.gene073606:intron 50.0%
GTGGCAATGTGAACAGACCT+TGG + chr1.1:34578742-34578761 None:intergenic 50.0%
TCCCTGGTGTGCCTGATATT+TGG - chr1.1:34581424-34581443 MS.gene073606:CDS 50.0%
TGAGTAGGGGAGTGGAATGT+GGG - chr1.1:34579449-34579468 MS.gene073606:intron 50.0%
TGGATGTCCATCTCTGCGTA+AGG + chr1.1:34581328-34581347 None:intergenic 50.0%
! GTTCAGGAGCATGTTGTTGC+AGG + chr1.1:34581230-34581249 None:intergenic 50.0%
CTGAGTAGGGGAGTGGAATG+TGG - chr1.1:34579448-34579467 MS.gene073606:intron 55.0%
GACCTACCATGGACCTGCAA+TGG - chr1.1:34580139-34580158 MS.gene073606:intron 55.0%
GACTGAGTACATGGGCAAGG+TGG - chr1.1:34580848-34580867 MS.gene073606:intron 55.0%
GAGTACATGGGCAAGGTGGG+TGG - chr1.1:34580852-34580871 MS.gene073606:intron 60.0%
GGAAGGCCATTGCAGGTCCA+TGG + chr1.1:34580148-34580167 None:intergenic 60.0%
GGCCATTGCAGGTCCATGGT+AGG + chr1.1:34580144-34580163 None:intergenic 60.0%
! TGCAGTCATTGGTGCCTCCC+TGG - chr1.1:34581408-34581427 MS.gene073606:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 34578427 34581473 34578427 ID=MS.gene073606
chr1.1 mRNA 34578427 34581473 34578427 ID=MS.gene073606.t1;Parent=MS.gene073606
chr1.1 exon 34581157 34581473 34581157 ID=MS.gene073606.t1.exon1;Parent=MS.gene073606.t1
chr1.1 CDS 34581157 34581473 34581157 ID=cds.MS.gene073606.t1;Parent=MS.gene073606.t1
chr1.1 exon 34579725 34579896 34579725 ID=MS.gene073606.t1.exon2;Parent=MS.gene073606.t1
chr1.1 CDS 34579725 34579896 34579725 ID=cds.MS.gene073606.t1;Parent=MS.gene073606.t1
chr1.1 exon 34579464 34579645 34579464 ID=MS.gene073606.t1.exon3;Parent=MS.gene073606.t1
chr1.1 CDS 34579464 34579645 34579464 ID=cds.MS.gene073606.t1;Parent=MS.gene073606.t1
chr1.1 exon 34578962 34579120 34578962 ID=MS.gene073606.t1.exon4;Parent=MS.gene073606.t1
chr1.1 CDS 34578962 34579120 34578962 ID=cds.MS.gene073606.t1;Parent=MS.gene073606.t1
chr1.1 exon 34578427 34578724 34578427 ID=MS.gene073606.t1.exon5;Parent=MS.gene073606.t1
chr1.1 CDS 34578427 34578724 34578427 ID=cds.MS.gene073606.t1;Parent=MS.gene073606.t1
Gene Sequence

>MS.gene073606

ATGGCAACACCTATGACTCATTTTCTTTCTCTTTTCTTGTTGTTCAACTTCTTCCACTGCACATTATCTCTTCTGGACCCACAAGATGATGTTGGCTTTCTAGTTGAACCTGATGATGTTAACATTGTCCAAAACAATAGAGAATCTAGCAAGAGATGCGACTTTTCTGTTGGAAAATGGGTTTATGATGAATCTTATCCTCTTTATGATCCTAACTGCCCTTATCTTAGTACTGCAGTTACTTGTCAAAAGAATGGGAGGCCAGATTCTGATTATGAGAAGTGGAAGTGGAAGCCAAGTGGTTGTTCTATTCCAAGGTCTGTTCACATTGCCACCTTTTTGTTTTCTTCTATACACTCTCATTTACTCAATATTTATTTATTTATTTATCATTTTTTTTATATTTAGTATATATATGATCCATCATTAAATTAAAATTTGAGAAATGTTAACATGTACTCTCAGTGGATTTGTTAATAAGTTCAAAATATAAATTTTATCTAAGGAATAATGCATTTAATAAAATAAAACTTTAAAAAACAATTTTTTTACAAAATTTGTCAATTTTTTTTATAATCTTTAACAGGTGTCCTCATAGCACTTAAAATTTCAATAGTAGTCCTGCATCCATTTAATTGATAAACAAAGTTTACTAATCAAACATAGCCTAATGATGTTGATTTGAGATCTTAGAGTGTGCTTTTCTTAAGGTCTTAGTTTGATTCCTTCTGTATCAATTTCGGTGGACTAGTTATATAGAGATTTGATTTGACTTTAAATGAGCCCCCACAAGTGAACAATGAGATTAGATCTCTCGAATTAGTCGGTCTTTAGGCCGGATATTGAGTTCTAAAAAAAACATGGTTGGACTTTTTAGTTAATTAATTTGAGTATTTACCTTGACACAAGTAGTCATAGTATATTCTAGATTTTTTAGGGGAATATATTCTAGATTTATCATTCAAATTTGTGGTACTTTTGTCACTTTTTTATTTTTGTCAATGCTTGTTTTTTATCAACTCTGAGTAGGGGAGTGGAATGTGGGATGTTACTATGTCATTCCAACCCTCCATTGATCTCAGATTTTAATCCCATCTCCTATATGCATAACTTCCATAGTCATGGTTTTTGTGTTATTGTAATTTGTACGGATATGGTAAGCTTGTGGATGATGAGTTTTTGAATGGAGTAGATGATCTAATTCATCCCTGAAATTGTAAGTGTTAGTCATTTTAGTCCCCAAATTTCATGAAAAGGCAACTATGTCTGCTAAGTTGTATGAGCTAGACGTCACATCATTGCGAAGTCACAACTCACAAGGACCATTTTGGCTGAAAATATTTGTGGATTCTTATTAATGTGGTTAAATTGAAGAAAGACTAATTTTCTAGCAATTAAACCACCTTCCATTTTACTTATTTTAAGAACTATAAATGACTGATGTTCACGATTTCATGACTTAAGCGACCGACATTTACAATTTCAAGAACCAAATTTGTATTTAAGTAAATGAATTTCAACACTTTGGTATGAATAAACTCCTGCTTGTAAACTTAACTAGCTTATTACCTCTGTAGGTTTGATGCACTAAGGTTTCTTGGAAAAATGAGAAGGAAGAGAATCATGTTGGTGGGTGATTCAATAATGAGAAATCAGTGGGAATCTTTAGTATGCTTAGTACAAGGTGTAATACCAACTGGTAGAAAAAGGGTGACCTACCATGGACCTGCAATGGCCTTCCATTCAATGGTAATGAAGACATTCATAAAACACATTTTCTTTTCTTCCTTCCTTTGTAAATTATTGACATCACAGTTTTCTCTGGTAGGATTTTGAGACATCAATTGAGTTTTTATGGGCACCATTGTTAGTTGAACTGAAGAAAAGTCCAGAAAACAAGAGAGTCTTACATTTGGATTTGATCGAGGAGAATGCAAAGTATTGGAGAGGAGTTGATATCCTTGTATTTGATTCAGCTCAGTGGTGGACTCACTCCGATAAAACAAGCTCGTAAGGAAGATTCTTTGTCAATTAATATTCCACCTTCTCTTCATATCATCCCATTTTCTTAATTTCCCTCGTAGGACAAACTACTTAATTCAACATTTATAGCATAAGCGTTTATCATTTAAGTAATTATGTAAAAGATATTTTTGCAACAAAAAATAAAATTAAGTCAAATTGTTTTTATATAAGTTGTTTTCATAAACTATCTTAGAAAGCTTATGGGAATAAGCCAAAATCAGCTTACGGACATGGGATAAGTTGCTTCACTAAACTTTTTAAAAGAGGCTTAAGCTTAAATTTTGAATAAGTGCTTGACATTTATATGCTTCTTTCTTGACTAATACAGGTGGGATTACTACAAGGAGGGAAATAATCTGATCAAAAACATGACTCTTATGGTTGCTTATCAAAAAGGACTGAGTACATGGGCAAGGTGGGTGGATCTAAATCTAAACCCTAAAAAAACCAAAGTCATTTTCAGAAGCATGTCACCAAGGCATAACAGGTACCATATATATATTTTTATATGCCTAAAACTTGTTTATCTTTGTCTATACAATAACAACCAAGTCTTACATCTCACTAAGTGAAATTGATTACATGGATCAAACGACACCATAATATTCTATCGGAAATCATGTTTATAGCCAAACCAACCATTGAGCTCTAAATCTTAACAGTTTTTCACCTATAATTGTTTTTTGGCATTTCACTGTCTCTAGCGATTGGGTTTCTTATGTAGGGAAAATGGTTGGAAATGCGACAATCAGAAACAGCCTCTACCATTTTTCAGCCTGCAACAACATGCTCCTGAACCTTTAGTTGTTCTCCAAGGAGTGCTGAAGAAAATGAGGTTTCCGGTATACCTGCAAGATATTACGACAATGACTGCCTTACGCAGAGATGGACATCCATCTGTGTATAGGAAGGCAACCAGCCAAGATGAGAAACAAAGAATAGGCCATTCCTCTGATTGCAGTCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTGCGCTGCTTTGA
Protein sequence

>MS.gene073606.t1

MATPMTHFLSLFLLFNFFHCTLSLLDPQDDVGFLVEPDDVNIVQNNRESSKRCDFSVGKWVYDESYPLYDPNCPYLSTAVTCQKNGRPDSDYEKWKWKPSGCSIPRFDALRFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGRKRVTYHGPAMAFHSMDFETSIEFLWAPLLVELKKSPENKRVLHLDLIEENAKYWRGVDILVFDSAQWWTHSDKTSSWDYYKEGNNLIKNMTLMVAYQKGLSTWARWVDLNLNPKKTKVIFRSMSPRHNRENGWKCDNQKQPLPFFSLQQHAPEPLVVLQGVLKKMRFPVYLQDITTMTALRRDGHPSVYRKATSQDEKQRIGHSSDCSHWCLPGVPDIWNEMLSALL