AlfalfaGEDB | MS.gene08627

M. sativa cultivar XinJiangDaYe / MS.gene08627

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08627.t1	XP_003606392.1	56.7	67	29	0	105	171	100	166	2.50E-08	68.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08627.t1	G7JPD4	56.7	67	29	0	105	171	100	166	1.8e-08	68.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene08627	0.825495	4.55E-54	-1.69E-46
MS.gene04917	MS.gene08627	0.828882	7.02E-55	-1.69E-46
MS.gene049887	MS.gene08627	0.803451	3.46E-49	-1.69E-46
MS.gene04998	MS.gene08627	0.828178	1.04E-54	-1.69E-46
MS.gene050414	MS.gene08627	0.825507	4.51E-54	-1.69E-46
MS.gene050838	MS.gene08627	0.806621	7.52E-50	-1.69E-46
MS.gene051226	MS.gene08627	0.810437	1.15E-50	-1.69E-46
MS.gene051234	MS.gene08627	0.807263	5.51E-50	-1.69E-46
MS.gene051852	MS.gene08627	0.813224	2.85E-51	-1.69E-46
MS.gene052016	MS.gene08627	0.800211	1.60E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08627.t1	MTR_4g459420	73.510	151	35	3	24	171	18	166	1.59e-18	78.2
MS.gene08627.t1	MTR_4g059520	73.510	151	35	3	24	171	18	166	1.59e-18	78.2
MS.gene08627.t1	MTR_2g094170	45.000	80	40	2	94	171	71	148	4.21e-18	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08627.t1	AT2G28440	40.244	82	45	1	94	171	187	268	2.45e-13	66.2
MS.gene08627.t1	AT3G45230	41.667	180	77	7	11	170	4	175	4.59e-11	58.9

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Find 65 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAGCGGGAATAGCGGT+TGG	0.593108	4.1:-39104123	MS.gene08627:CDS
AATAGCGGTTGGAGTGATAG+CGG	0.659529	4.1:-39104112	MS.gene08627:CDS
AATATTCAGAGATCTGAGTA+TGG	0.445483	4.1:-39104039	MS.gene08627:CDS
AATGAGTTCCGGCAAGAAAG+CGG	0.641771	4.1:-39104136	MS.gene08627:CDS
ACCGATTCCGACTCCTTCTC+CGG	0.497741	4.1:-39104355	MS.gene08627:CDS
ACTGGAGATGGAGATGGTGA+AGG	0.681678	4.1:+39104237	None:intergenic
AGCGGTTGGAGTGATAGCGG+CGG	0.750494	4.1:-39104109	MS.gene08627:CDS
AGTACCATCGCCGGATGTGG+CGG	0.585844	4.1:-39104217	MS.gene08627:CDS
AGTGATAGCGGCGGTAGGTG+TGG	0.647668	4.1:-39104100	MS.gene08627:CDS
ATGAATTCGTCGCCGGCGAC+GGG	0.458160	4.1:+39104400	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATTCAGAGATCTGAGTA+TGG	-	chr4.1:39104476-39104495	MS.gene08627:CDS	30.0%
AATAGCGGTTGGAGTGATAG+CGG	-	chr4.1:39104403-39104422	MS.gene08627:CDS	45.0%
AATGAGTTCCGGCAAGAAAG+CGG	-	chr4.1:39104379-39104398	MS.gene08627:CDS	45.0%
GAAGGAGAAGGAGAATTCTC+TGG	+	chr4.1:39104251-39104270	None:intergenic	45.0%
GAAGGAGAATTCTCTGGTGA+AGG	+	chr4.1:39104245-39104264	None:intergenic	45.0%
TTTACCGATGAATTCGTCGC+CGG	+	chr4.1:39104125-39104144	None:intergenic	45.0%
AAGAAAGCGGGAATAGCGGT+TGG	-	chr4.1:39104392-39104411	MS.gene08627:CDS	50.0%
ACTGGAGATGGAGATGGTGA+AGG	+	chr4.1:39104281-39104300	None:intergenic	50.0%
ATGAGTTCCGGCAAGAAAGC+GGG	-	chr4.1:39104380-39104399	MS.gene08627:CDS	50.0%
GAAGGCGAAGAAGAAGGAGA+AGG	+	chr4.1:39104263-39104282	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	39104011	39104526	39104011	ID=MS.gene08627
chr4.1	mRNA	39104011	39104526	39104011	ID=MS.gene08627.t1;Parent=MS.gene08627
chr4.1	exon	39104011	39104526	39104011	ID=MS.gene08627.t1.exon1;Parent=MS.gene08627.t1
chr4.1	CDS	39104011	39104526	39104011	ID=cds.MS.gene08627.t1;Parent=MS.gene08627.t1

Gene Sequence

>MS.gene08627

ATGACGTTGAATTCTTCAGTTGCAATTGCAAGATTCTCTCTTGTTTTTCTTCTTCTTTCTTTCTTAGTCAACATCGCTTCATCCGCTGATTCTCCGGCTCCGTCCCCGTCGCCGGCGACGAATTCATCGGTAAATTCTCCTTCTCCGACACCGATTCCGACTCCTTCTCCGGCAACATCACCTCCAGCGCCAACTCCAACTCCCTCTCCTCATTCCGATTCACCACCAGCACCTTCACCAGAGAATTCTCCTTCTCCTTCTTCTTCGCCTTCACCATCTCCATCTCCAGTACCATCGCCGGATGTGGCGGATGATAACGGAGTAAACCACACTGGCATCGGTGGAGATGGAAAATCGTCTGGCGGAGGAATGAGTTCCGGCAAGAAAGCGGGAATAGCGGTTGGAGTGATAGCGGCGGTAGGTGTGGTTGCATTGGGAGCGATGGTGGTGAAGAAGCGTAGGCAGAATATTCAGAGATCTGAGTATGGATACACAGCAAGAAGAGAACTTCTGTAA

Protein sequence

>MS.gene08627.t1

MTLNSSVAIARFSLVFLLLSFLVNIASSADSPAPSPSPATNSSVNSPSPTPIPTPSPATSPPAPTPTPSPHSDSPPAPSPENSPSPSSSPSPSPSPVPSPDVADDNGVNHTGIGGDGKSSGGGMSSGKKAGIAVGVIAAVGVVALGAMVVKKRRQNIQRSEYGYTARRELL