Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09712.t1 | XP_003611388.2 | 94.8 | 172 | 9 | 0 | 20 | 191 | 81 | 252 | 4.40E-94 | 354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09712.t1 | O23547 | 57.4 | 169 | 71 | 1 | 20 | 188 | 80 | 247 | 6.1e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09712.t1 | G7JYL2 | 94.8 | 172 | 9 | 0 | 20 | 191 | 81 | 252 | 3.2e-94 | 354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene09712 | 0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene09712 | 0.832116 | 1.14E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene09712 | 0.801096 | 1.06E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene09712 | 0.831436 | 1.67E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene09712 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene09712 | 0.836349 | 9.86E-57 | -1.69E-46 |
| MS.gene051234 | MS.gene09712 | 0.831679 | 1.46E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene09712 | 0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene09712 | 0.81657 | 5.16E-52 | -1.69E-46 |
| MS.gene053456 | MS.gene09712 | 0.807436 | 5.06E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene09712 | 0.803534 | 3.33E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene09712 | 0.800141 | 1.66E-48 | -1.69E-46 |
| MS.gene056482 | MS.gene09712 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene09712 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene09712 | 0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene09712 | 0.821224 | 4.52E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene09712 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene09712 | 0.819159 | 1.34E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene09712 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene09712 | 0.82 | 8.64E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09712 | MS.gene28934 | PPI |
| MS.gene09712 | MS.gene003384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09712.t1 | MTR_5g013440 | 93.678 | 174 | 11 | 0 | 18 | 191 | 79 | 252 | 1.57e-122 | 346 |
| MS.gene09712.t1 | MTR_4g099370 | 69.767 | 172 | 52 | 0 | 20 | 191 | 80 | 251 | 3.24e-93 | 272 |
| MS.gene09712.t1 | MTR_4g099400 | 57.738 | 168 | 71 | 0 | 22 | 189 | 11 | 178 | 1.67e-75 | 224 |
| MS.gene09712.t1 | MTR_4g075790 | 37.278 | 169 | 105 | 1 | 22 | 190 | 10 | 177 | 2.88e-41 | 138 |
| MS.gene09712.t1 | MTR_4g075790 | 37.278 | 169 | 105 | 1 | 22 | 190 | 76 | 243 | 3.78e-40 | 137 |
| MS.gene09712.t1 | MTR_4g098930 | 38.857 | 175 | 106 | 1 | 18 | 191 | 79 | 253 | 1.26e-39 | 135 |
| MS.gene09712.t1 | MTR_2g090265 | 28.161 | 174 | 116 | 5 | 22 | 191 | 89 | 257 | 1.22e-18 | 81.3 |
| MS.gene09712.t1 | MTR_2g090270 | 26.705 | 176 | 120 | 5 | 19 | 190 | 88 | 258 | 1.26e-17 | 78.6 |
| MS.gene09712.t1 | MTR_4g099380 | 34.932 | 146 | 75 | 5 | 52 | 191 | 1 | 132 | 4.84e-17 | 77.4 |
| MS.gene09712.t1 | MTR_0809s0010 | 30.114 | 176 | 116 | 5 | 18 | 190 | 99 | 270 | 2.18e-16 | 75.5 |
| MS.gene09712.t1 | MTR_4g028640 | 27.273 | 176 | 120 | 6 | 18 | 190 | 94 | 264 | 4.37e-16 | 74.3 |
| MS.gene09712.t1 | MTR_0122s0020 | 26.554 | 177 | 121 | 5 | 18 | 190 | 93 | 264 | 1.79e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09712.t1 | AT4G17030 | 57.396 | 169 | 71 | 1 | 20 | 188 | 80 | 247 | 2.78e-74 | 224 |
| MS.gene09712.t1 | AT4G38400 | 37.647 | 170 | 105 | 1 | 22 | 190 | 79 | 248 | 5.25e-37 | 129 |
| MS.gene09712.t1 | AT3G45970 | 36.842 | 171 | 106 | 2 | 22 | 190 | 51 | 221 | 2.16e-36 | 127 |
| MS.gene09712.t1 | AT3G45960 | 34.706 | 170 | 110 | 1 | 22 | 190 | 30 | 199 | 3.69e-36 | 125 |
| MS.gene09712.t1 | AT3G45970 | 36.842 | 171 | 106 | 2 | 22 | 190 | 78 | 248 | 3.97e-36 | 127 |
| MS.gene09712.t1 | AT3G45960 | 34.706 | 170 | 110 | 1 | 22 | 190 | 78 | 247 | 1.18e-35 | 125 |
| MS.gene09712.t1 | AT1G65680 | 28.814 | 177 | 116 | 6 | 20 | 190 | 101 | 273 | 8.25e-18 | 79.3 |
| MS.gene09712.t1 | AT4G28250 | 26.705 | 176 | 121 | 6 | 20 | 191 | 90 | 261 | 6.36e-14 | 68.6 |
| MS.gene09712.t1 | AT5G05290 | 26.316 | 190 | 126 | 7 | 3 | 185 | 69 | 251 | 1.01e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCCGTGGCTATTCAAATT+TGG | 0.158342 | 5.2:-5405855 | MS.gene09712:CDS |
| TGGCTATAATATCTTGTTTA+AGG | 0.174105 | 5.2:-5405750 | MS.gene09712:CDS |
| TACGCATTGGCCTCCATTCT+TGG | 0.310288 | 5.2:+5405541 | None:intergenic |
| ATCTCTAGTGATTGGGAAGC+TGG | 0.319429 | 5.2:-5405408 | MS.gene09712:CDS |
| GTGGTAGTGCTGGGCTGTAT+TGG | 0.321854 | 5.2:-5405449 | MS.gene09712:CDS |
| CCATTCTCGTCACACAATTC+TGG | 0.326522 | 5.2:+5405935 | None:intergenic |
| TGGTAGTGCTGGGCTGTATT+GGG | 0.329472 | 5.2:-5405448 | MS.gene09712:CDS |
| CCCCGTGGCTATTCAAATTT+GGG | 0.333249 | 5.2:-5405854 | MS.gene09712:CDS |
| AGGCCAATGCGTAGGGCATT+TGG | 0.356145 | 5.2:-5405531 | MS.gene09712:CDS |
| CCGATTTCGGTGTGGGAGAT+AGG | 0.376563 | 5.2:-5405895 | MS.gene09712:CDS |
| CCTATCTCCCACACCGAAAT+CGG | 0.384864 | 5.2:+5405895 | None:intergenic |
| AGACTGTTATCTCTAGTGAT+TGG | 0.400920 | 5.2:-5405416 | MS.gene09712:CDS |
| GCCATTCTTATTCTCTATGT+TGG | 0.402224 | 5.2:-5405695 | MS.gene09712:CDS |
| CTCCAAGTGAGTGGTAGTGC+TGG | 0.409157 | 5.2:-5405459 | MS.gene09712:CDS |
| GACTGTTATCTCTAGTGATT+GGG | 0.436426 | 5.2:-5405415 | MS.gene09712:CDS |
| AACAGGAAGATTGCCAAGAA+TGG | 0.466268 | 5.2:-5405554 | MS.gene09712:intron |
| ATTCTTATTCTCTATGTTGG+TGG | 0.472042 | 5.2:-5405692 | MS.gene09712:CDS |
| TCTCTAGTGATTGGGAAGCT+GGG | 0.472781 | 5.2:-5405407 | MS.gene09712:CDS |
| TATGTGGTGGTGACCGATTT+CGG | 0.479504 | 5.2:-5405908 | MS.gene09712:CDS |
| TCGCAGGCGTTTCTTCGCTA+TGG | 0.490569 | 5.2:-5406196 | MS.gene09712:CDS |
| TCGCTATGGAAGAATGGATC+TGG | 0.490619 | 5.2:-5406182 | MS.gene09712:CDS |
| CCAGAATTGTGTGACGAGAA+TGG | 0.501363 | 5.2:-5405935 | MS.gene09712:CDS |
| ATCACTAGAGATAACAGTCT+TGG | 0.514327 | 5.2:+5405419 | None:intergenic |
| CTCTAGTGATTGGGAAGCTG+GGG | 0.520412 | 5.2:-5405406 | MS.gene09712:CDS |
| AACTTGATATCACCTCTTGG+AGG | 0.525176 | 5.2:+5405486 | None:intergenic |
| CTCAACTTGATATCACCTCT+TGG | 0.527086 | 5.2:+5405483 | None:intergenic |
| TTATAGCCATTGTATTTGCA+AGG | 0.532628 | 5.2:+5405764 | None:intergenic |
| GCCCAGCACTACCACTCACT+TGG | 0.534848 | 5.2:+5405457 | None:intergenic |
| ACCAACATAGAGAATAAGAA+TGG | 0.537864 | 5.2:+5405694 | None:intergenic |
| GCCCAAATTTGAATAGCCAC+GGG | 0.544992 | 5.2:+5405853 | None:intergenic |
| TGCCCAAATTTGAATAGCCA+CGG | 0.546821 | 5.2:+5405852 | None:intergenic |
| GTTCCAAATGCCCTACGCAT+TGG | 0.550110 | 5.2:+5405528 | None:intergenic |
| GTAAATGATGGCAATGTCGC+AGG | 0.552094 | 5.2:-5406212 | None:intergenic |
| TCCAAGTGAGTGGTAGTGCT+GGG | 0.552324 | 5.2:-5405458 | MS.gene09712:CDS |
| GTTTCTTCGCTATGGAAGAA+TGG | 0.552967 | 5.2:-5406188 | MS.gene09712:CDS |
| AAGAATGGAGGCCAATGCGT+AGG | 0.554025 | 5.2:-5405539 | MS.gene09712:CDS |
| TGGAAGAATGGATCTGGTTG+TGG | 0.555017 | 5.2:-5406176 | MS.gene09712:CDS |
| TATAGCCATTGTATTTGCAA+GGG | 0.561411 | 5.2:+5405765 | None:intergenic |
| GTGGTGACCGATTTCGGTGT+GGG | 0.566642 | 5.2:-5405902 | MS.gene09712:CDS |
| AACTGCTGTTCAGTTGTGGC+AGG | 0.569473 | 5.2:-5405657 | MS.gene09712:intron |
| ATAAGAATGGCTAAGTAGTG+AGG | 0.575706 | 5.2:+5405707 | None:intergenic |
| ACTTGATATCACCTCTTGGA+GGG | 0.580063 | 5.2:+5405487 | None:intergenic |
| AGAATGGAGGCCAATGCGTA+GGG | 0.588746 | 5.2:-5405538 | MS.gene09712:CDS |
| TAGTGCTGGGCTGTATTGGG+TGG | 0.610771 | 5.2:-5405445 | MS.gene09712:CDS |
| AGGAAGATTGCCAAGAATGG+AGG | 0.614849 | 5.2:-5405551 | MS.gene09712:CDS |
| TGACGAGAATGGAGCATATG+TGG | 0.619740 | 5.2:-5405924 | MS.gene09712:CDS |
| AGAATCCCTTGCAAATACAA+TGG | 0.620915 | 5.2:-5405770 | MS.gene09712:CDS |
| ATGTAACTGCTGTTCAGTTG+TGG | 0.651186 | 5.2:-5405661 | MS.gene09712:CDS |
| GGTGGTGACCGATTTCGGTG+TGG | 0.653687 | 5.2:-5405903 | MS.gene09712:CDS |
| AAGTTGAGGCTCCAAGTGAG+TGG | 0.655665 | 5.2:-5405468 | MS.gene09712:CDS |
| CAAGAGGTGATATCAAGTTG+AGG | 0.672009 | 5.2:-5405482 | MS.gene09712:CDS |
| GACTTCATCATGAGTCCCCG+TGG | 0.688519 | 5.2:-5405869 | MS.gene09712:CDS |
| GATGCAGAGAACCCTCCAAG+AGG | 0.690257 | 5.2:-5405498 | MS.gene09712:CDS |
| CCCAAATTTGAATAGCCACG+GGG | 0.693150 | 5.2:+5405854 | None:intergenic |
| CGAGAATGGAGCATATGTGG+TGG | 0.757236 | 5.2:-5405921 | MS.gene09712:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATAATGATGAAAT+AGG | - | chr5.2:5405610-5405629 | MS.gene09712:intron | 10.0% |
| !! | TGAAGTAATATATATTATAA+AGG | - | chr5.2:5405543-5405562 | MS.gene09712:CDS | 10.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | + | chr5.2:5405955-5405974 | None:intergenic | 15.0% |
| !! | ACATTTCTTGAAATTGAATT+GGG | - | chr5.2:5405985-5406004 | MS.gene09712:intron | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+TGG | - | chr5.2:5405984-5406003 | MS.gene09712:intron | 20.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | - | chr5.2:5405615-5405634 | MS.gene09712:intron | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | - | chr5.2:5405737-5405756 | MS.gene09712:CDS | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | + | chr5.2:5405579-5405598 | None:intergenic | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | - | chr5.2:5405772-5405791 | MS.gene09712:CDS | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | - | chr5.2:5405767-5405786 | MS.gene09712:CDS | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | - | chr5.2:5405832-5405851 | MS.gene09712:CDS | 25.0% |
| ACCAACATAGAGAATAAGAA+TGG | + | chr5.2:5405891-5405910 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | - | chr5.2:5405890-5405909 | MS.gene09712:CDS | 30.0% | |
| TATAGCCATTGTATTTGCAA+GGG | + | chr5.2:5405820-5405839 | None:intergenic | 30.0% | |
| TGAATTGGGTTTACTTGAAA+TGG | - | chr5.2:5405999-5406018 | MS.gene09712:intron | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | + | chr5.2:5405821-5405840 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | - | chr5.2:5405775-5405794 | MS.gene09712:CDS | 30.0% |
| AGAATCCCTTGCAAATACAA+TGG | - | chr5.2:5405812-5405831 | MS.gene09712:CDS | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | - | chr5.2:5406166-5406185 | MS.gene09712:CDS | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | + | chr5.2:5405878-5405897 | None:intergenic | 35.0% | |
| ATCACTAGAGATAACAGTCT+TGG | + | chr5.2:5406166-5406185 | None:intergenic | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | - | chr5.2:5406167-5406186 | MS.gene09712:CDS | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | - | chr5.2:5405887-5405906 | MS.gene09712:CDS | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | - | chr5.2:5406005-5406024 | MS.gene09712:intron | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | - | chr5.2:5406011-5406030 | MS.gene09712:intron | 35.0% |
| AACAGGAAGATTGCCAAGAA+TGG | - | chr5.2:5406028-5406047 | MS.gene09712:intron | 40.0% | |
| AACTTGATATCACCTCTTGG+AGG | + | chr5.2:5406099-5406118 | None:intergenic | 40.0% | |
| ACTTGATATCACCTCTTGGA+GGG | + | chr5.2:5406098-5406117 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | - | chr5.2:5405921-5405940 | MS.gene09712:CDS | 40.0% | |
| CTCAACTTGATATCACCTCT+TGG | + | chr5.2:5406102-5406121 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | - | chr5.2:5405394-5405413 | MS.gene09712:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | + | chr5.2:5405733-5405752 | None:intergenic | 40.0% | |
| ! | CAAGAGGTGATATCAAGTTG+AGG | - | chr5.2:5406100-5406119 | MS.gene09712:intron | 40.0% |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr5.2:5406031-5406050 | MS.gene09712:intron | 45.0% | |
| ATCTCTAGTGATTGGGAAGC+TGG | - | chr5.2:5406174-5406193 | MS.gene09712:CDS | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | - | chr5.2:5405647-5405666 | MS.gene09712:intron | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | + | chr5.2:5405650-5405669 | None:intergenic | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | + | chr5.2:5405731-5405750 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | - | chr5.2:5405728-5405747 | MS.gene09712:CDS | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | + | chr5.2:5405732-5405751 | None:intergenic | 45.0% | |
| TCCCCGTGGCTATTCAAATT+TGG | - | chr5.2:5405727-5405746 | MS.gene09712:CDS | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | - | chr5.2:5405400-5405419 | MS.gene09712:CDS | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | - | chr5.2:5406175-5406194 | MS.gene09712:CDS | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | - | chr5.2:5405658-5405677 | MS.gene09712:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | - | chr5.2:5405406-5405425 | MS.gene09712:CDS | 45.0% | |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | + | chr5.2:5405859-5405878 | None:intergenic | 45.0% |
| ! | TATGTGGTGGTGACCGATTT+CGG | - | chr5.2:5405674-5405693 | MS.gene09712:CDS | 45.0% |
| AACTGCTGTTCAGTTGTGGC+AGG | - | chr5.2:5405925-5405944 | MS.gene09712:CDS | 50.0% | |
| AAGAATGGAGGCCAATGCGT+AGG | - | chr5.2:5406043-5406062 | MS.gene09712:intron | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | - | chr5.2:5406114-5406133 | MS.gene09712:intron | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | - | chr5.2:5406044-5406063 | MS.gene09712:intron | 50.0% | |
| CCTATCTCCCACACCGAAAT+CGG | + | chr5.2:5405690-5405709 | None:intergenic | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | - | chr5.2:5405661-5405680 | MS.gene09712:CDS | 50.0% | |
| CTCTAGTGATTGGGAAGCTG+GGG | - | chr5.2:5406176-5406195 | MS.gene09712:CDS | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | + | chr5.2:5406057-5406076 | None:intergenic | 50.0% | |
| ! | TACGCATTGGCCTCCATTCT+TGG | + | chr5.2:5406044-5406063 | None:intergenic | 50.0% |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | - | chr5.2:5406124-5406143 | MS.gene09712:intron | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | - | chr5.2:5406134-5406153 | MS.gene09712:intron | 50.0% |
| GACTTCATCATGAGTCCCCG+TGG | - | chr5.2:5405713-5405732 | MS.gene09712:CDS | 55.0% | |
| GATGCAGAGAACCCTCCAAG+AGG | - | chr5.2:5406084-5406103 | MS.gene09712:intron | 55.0% | |
| TCGCAGGCGTTTCTTCGCTA+TGG | - | chr5.2:5405386-5405405 | MS.gene09712:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | - | chr5.2:5406051-5406070 | MS.gene09712:intron | 55.0% |
| ! | CCGATTTCGGTGTGGGAGAT+AGG | - | chr5.2:5405687-5405706 | MS.gene09712:CDS | 55.0% |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | - | chr5.2:5406123-5406142 | MS.gene09712:intron | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | - | chr5.2:5406133-5406152 | MS.gene09712:intron | 55.0% |
| ! | GTGGTGACCGATTTCGGTGT+GGG | - | chr5.2:5405680-5405699 | MS.gene09712:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | - | chr5.2:5406137-5406156 | MS.gene09712:intron | 55.0% |
| GCCCAGCACTACCACTCACT+TGG | + | chr5.2:5406128-5406147 | None:intergenic | 60.0% | |
| ! | GGTGGTGACCGATTTCGGTG+TGG | - | chr5.2:5405679-5405698 | MS.gene09712:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 5405374 | 5406230 | 5405374 | ID=MS.gene09712 |
| chr5.2 | mRNA | 5405374 | 5406230 | 5405374 | ID=MS.gene09712.t1;Parent=MS.gene09712 |
| chr5.2 | exon | 5406163 | 5406230 | 5406163 | ID=MS.gene09712.t1.exon1;Parent=MS.gene09712.t1 |
| chr5.2 | CDS | 5406163 | 5406230 | 5406163 | ID=cds.MS.gene09712.t1;Parent=MS.gene09712.t1 |
| chr5.2 | exon | 5405658 | 5405967 | 5405658 | ID=MS.gene09712.t1.exon2;Parent=MS.gene09712.t1 |
| chr5.2 | CDS | 5405658 | 5405967 | 5405658 | ID=cds.MS.gene09712.t1;Parent=MS.gene09712.t1 |
| chr5.2 | exon | 5405374 | 5405571 | 5405374 | ID=MS.gene09712.t1.exon3;Parent=MS.gene09712.t1 |
| chr5.2 | CDS | 5405374 | 5405571 | 5405374 | ID=cds.MS.gene09712.t1;Parent=MS.gene09712.t1 |
| Gene Sequence |
| Protein sequence |
