AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20029

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20029.t1 MTR_7g100590 97.877 471 10 0 1 471 1 471 0.0 963
MS.gene20029.t1 MTR_2g093060 53.811 433 142 14 1 408 1 400 2.46e-119 357
MS.gene20029.t1 MTR_2g093060 53.811 433 141 15 1 408 1 399 6.06e-118 354
MS.gene20029.t1 MTR_4g061200 54.273 433 135 13 1 408 1 395 2.32e-116 350
MS.gene20029.t1 MTR_4g061200 55.721 402 121 10 1 381 1 366 5.44e-114 341
MS.gene20029.t1 MTR_2g093060 50.808 433 140 15 1 408 1 385 1.13e-104 319
MS.gene20029.t1 MTR_4g061200 51.270 433 133 14 1 408 1 380 7.34e-102 312
MS.gene20029.t1 MTR_4g061200 52.488 402 119 11 1 381 1 351 3.37e-99 303
MS.gene20029.t1 MTR_5g016810 83.770 191 31 0 124 314 137 327 3.81e-97 302
MS.gene20029.t1 MTR_4g094868 83.420 193 30 1 124 314 161 353 3.08e-96 300
MS.gene20029.t1 MTR_4g094868 83.333 192 31 1 124 314 161 352 6.36e-95 296
MS.gene20029.t1 MTR_5g016810 80.711 197 32 1 124 314 137 333 3.41e-94 294
MS.gene20029.t1 MTR_7g061190 96.503 143 5 0 161 303 3 145 1.96e-85 259
MS.gene20029.t1 MTR_4g094868 80.380 158 30 1 158 314 39 196 1.13e-77 247
MS.gene20029.t1 MTR_1g049140 43.161 329 141 13 1 315 3 299 1.62e-54 187
MS.gene20029.t1 MTR_1g049140 42.553 329 143 12 1 315 3 299 6.67e-54 184
MS.gene20029.t1 MTR_4g127930 49.744 195 86 4 110 293 134 327 1.48e-51 182
MS.gene20029.t1 MTR_1g049140 50.195 257 94 13 1 242 3 240 4.78e-51 174
MS.gene20029.t1 MTR_4g130270 48.168 191 88 3 113 292 24 214 1.56e-50 176
MS.gene20029.t1 MTR_7g009410 48.515 202 87 4 136 323 65 263 1.77e-50 176
MS.gene20029.t1 MTR_7g080460 41.045 268 119 7 82 330 209 456 2.87e-49 179
MS.gene20029.t1 MTR_4g065370 52.071 169 70 3 136 293 163 331 4.25e-49 176
MS.gene20029.t1 MTR_4g065370 44.156 77 41 1 126 200 255 331 7.46e-12 67.8
MS.gene20029.t1 MTR_4g065370 42.857 91 43 2 215 296 150 240 9.80e-11 64.3
MS.gene20029.t1 MTR_2g098180 51.479 169 71 3 136 293 167 335 8.29e-49 175
MS.gene20029.t1 MTR_2g098180 44.156 77 41 1 126 200 259 335 1.37e-11 67.0
MS.gene20029.t1 MTR_5g015070 51.462 171 72 3 136 295 249 419 8.48e-49 176
MS.gene20029.t1 MTR_8g068510 49.490 196 84 5 112 295 106 298 2.30e-48 171
MS.gene20029.t1 MTR_8g068510 36.449 107 63 3 102 203 194 300 6.57e-11 64.3
MS.gene20029.t1 MTR_8g044070 44.545 220 105 5 113 323 31 242 3.48e-48 171
MS.gene20029.t1 MTR_3g103460 49.180 183 84 4 122 295 295 477 6.86e-47 172
MS.gene20029.t1 MTR_8g020510 51.807 166 72 3 136 293 248 413 9.17e-47 171
MS.gene20029.t1 MTR_6g011490 49.425 174 74 3 140 302 65 235 1.57e-46 165
MS.gene20029.t1 MTR_1g017400 50.595 168 75 3 136 295 312 479 3.83e-46 170
MS.gene20029.t1 MTR_4g097520 50.595 168 75 3 136 295 310 477 7.27e-46 169
MS.gene20029.t1 MTR_4g007770 48.598 214 88 6 130 321 30 243 1.17e-44 159
MS.gene20029.t1 MTR_8g044040 47.236 199 93 4 119 307 37 233 1.87e-44 160
MS.gene20029.t1 MTR_3g090510 80.952 105 20 0 167 271 163 267 7.54e-43 156
MS.gene20029.t1 MTR_8g468920 49.215 191 88 3 111 292 43 233 5.42e-41 151
MS.gene20029.t1 MTR_2g460730 46.465 198 96 4 116 303 25 222 3.12e-40 148
MS.gene20029.t1 MTR_5g031880 49.198 187 87 3 117 295 205 391 6.27e-40 150
MS.gene20029.t1 MTR_7g060560 79.048 105 21 1 167 271 156 259 8.03e-40 148
MS.gene20029.t1 MTR_7g091390 45.985 137 60 3 136 262 57 189 1.81e-21 96.7
MS.gene20029.t1 MTR_7g055620 93.182 44 3 0 213 256 6 49 4.98e-21 95.1
MS.gene20029.t1 MTR_1g037030 77.083 48 11 0 205 252 118 165 2.67e-18 84.0
MS.gene20029.t1 MTR_7g091390 47.573 103 47 2 163 262 3 101 6.39e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20029.t1 AT2G28550 53.211 436 153 15 1 408 1 413 1.67e-108 330
MS.gene20029.t1 AT4G36920 66.406 256 76 3 117 369 110 358 1.62e-96 298
MS.gene20029.t1 AT4G36920 66.406 256 76 3 117 369 110 358 1.62e-96 298
MS.gene20029.t1 AT2G28550 50.229 436 151 16 1 408 1 398 4.27e-94 292
MS.gene20029.t1 AT5G67180 78.947 190 40 0 125 314 82 271 2.07e-90 277
MS.gene20029.t1 AT5G67180 78.947 190 40 0 125 314 82 271 3.39e-90 279
MS.gene20029.t1 AT5G67180 84.795 171 26 0 125 295 82 252 2.06e-88 271
MS.gene20029.t1 AT2G28550 57.827 313 99 8 1 289 1 304 4.10e-86 268
MS.gene20029.t1 AT2G28550 59.928 277 79 7 1 254 1 268 7.17e-76 239
MS.gene20029.t1 AT2G28550 59.928 277 79 7 1 254 1 268 7.17e-76 239
MS.gene20029.t1 AT5G67180 77.059 170 36 2 125 293 82 249 1.11e-73 233
MS.gene20029.t1 AT5G60120 38.370 503 218 18 1 455 1 459 1.61e-70 232
MS.gene20029.t1 AT5G60120 38.632 497 218 18 1 455 1 452 3.22e-70 231
MS.gene20029.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene20029.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene20029.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene20029.t1 AT5G60120 37.333 525 215 20 1 455 1 481 9.19e-67 223
MS.gene20029.t1 AT2G28550 52.713 258 88 9 156 408 4 232 8.17e-64 208
MS.gene20029.t1 AT1G72570 48.958 192 85 4 115 293 197 388 2.12e-51 179
MS.gene20029.t1 AT4G37750 43.460 237 107 4 114 323 258 494 4.89e-51 182
MS.gene20029.t1 AT5G57390 48.469 196 89 4 109 293 56 250 1.21e-50 178
MS.gene20029.t1 AT1G51190 44.206 233 103 6 72 293 139 355 2.08e-50 180
MS.gene20029.t1 AT5G57390 48.469 196 89 4 109 293 174 368 4.75e-50 179
MS.gene20029.t1 AT5G17430 48.438 192 87 4 112 292 122 312 1.19e-49 177
MS.gene20029.t1 AT5G17430 48.438 192 87 4 112 292 184 374 2.05e-49 178
MS.gene20029.t1 AT2G39250 39.701 335 123 11 1 326 1 265 3.08e-49 171
MS.gene20029.t1 AT3G20840 50.888 169 72 3 136 293 178 346 7.28e-49 176
MS.gene20029.t1 AT3G20840 44.156 77 41 1 126 200 270 346 8.73e-12 67.8
MS.gene20029.t1 AT2G39250 46.473 241 82 6 1 233 1 202 3.62e-48 166
MS.gene20029.t1 AT3G54320 46.829 205 84 4 120 299 32 236 2.21e-44 161
MS.gene20029.t1 AT5G65510 54.386 171 67 3 136 295 170 340 2.61e-44 161
MS.gene20029.t1 AT3G54320 46.602 206 85 4 120 300 32 237 2.81e-44 161
MS.gene20029.t1 AT5G65510 54.386 171 67 3 136 295 228 398 3.76e-44 162
MS.gene20029.t1 AT5G65510 54.386 171 67 3 136 295 228 398 3.76e-44 162
MS.gene20029.t1 AT3G54990 66.443 149 39 2 97 245 91 228 8.01e-44 154
MS.gene20029.t1 AT3G54990 59.016 183 50 3 97 279 91 248 1.28e-43 157
MS.gene20029.t1 AT5G10510 52.047 171 71 3 136 295 227 397 3.20e-42 157
MS.gene20029.t1 AT5G10510 52.047 171 71 3 136 295 227 397 3.20e-42 157
MS.gene20029.t1 AT5G10510 52.047 171 71 3 136 295 265 435 3.92e-42 158
MS.gene20029.t1 AT5G10510 52.047 171 71 3 136 295 265 435 3.92e-42 158
MS.gene20029.t1 AT5G10510 52.047 171 71 3 136 295 250 420 4.27e-42 157
MS.gene20029.t1 AT5G65510 53.191 141 55 3 136 265 170 310 2.48e-40 147
MS.gene20029.t1 AT1G79700 53.448 174 70 2 130 292 43 216 4.27e-40 147
MS.gene20029.t1 AT1G16060 50.000 188 83 2 116 292 35 222 3.47e-39 145
MS.gene20029.t1 AT5G10510 50.000 168 76 3 136 295 227 394 4.25e-38 146
MS.gene20029.t1 AT5G10510 45.026 191 74 4 136 295 265 455 1.86e-35 139
MS.gene20029.t1 AT1G79700 50.575 174 65 3 130 292 43 206 8.32e-33 127
MS.gene20029.t1 AT3G54320 50.725 138 67 1 163 299 33 170 1.47e-31 124
MS.gene20029.t1 AT3G54320 50.725 138 67 1 163 299 33 170 1.47e-31 124
MS.gene20029.t1 AT1G79700 54.412 136 61 1 158 292 5 140 1.12e-28 113
MS.gene20029.t1 AT1G16060 54.412 136 61 1 158 292 17 152 6.80e-28 112
MS.gene20029.t1 AT1G79700 54.264 129 58 1 165 292 6 134 1.44e-26 107
MS.gene20029.t1 AT2G41710 48.855 131 53 2 136 256 67 193 5.06e-25 107
MS.gene20029.t1 AT2G41710 48.855 131 53 2 136 256 67 193 6.92e-25 107
MS.gene20029.t1 AT2G41710 47.059 136 53 3 136 256 67 198 7.34e-23 100
MS.gene20029.t1 AT2G41710 46.281 121 51 2 146 256 112 228 3.48e-20 93.2
MS.gene20029.t1 AT3G54320 54.167 96 43 1 206 300 1 96 3.43e-19 88.2
MS.gene20029.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene20029.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene20029.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene20029.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene20029.t1 AT3G25730 38.947 95 54 2 128 222 53 143 2.55e-12 68.2
MS.gene20029.t1 AT1G68840 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
MS.gene20029.t1 AT1G68840 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
MS.gene20029.t1 AT2G47520 44.578 83 43 2 122 202 32 113 1.56e-11 63.2

Find 134 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGCCATGCCCAATT+TGG 0.214682 7.2:+11598148 None:intergenic
ATCATTCCCGATTCGTTTGC+TGG 0.249662 7.2:+11600345 None:intergenic
CTCAATGTTCAGTCATCTTA+TGG 0.249805 7.2:-11598405 MS.gene20029:CDS
GTTTGCAAGTTCAGCGTAAC+TGG 0.251291 7.2:-11598608 MS.gene20029:CDS
AATCTGCTCCCGTTCCAAAT+TGG 0.265423 7.2:-11598162 MS.gene20029:CDS
CTCCAAAGTCCATATAATAA+TGG 0.282974 7.2:-11598130 MS.gene20029:CDS
GACGTTGGGAATCGCATATT+TGG 0.285512 7.2:-11600152 MS.gene20029:intron
AAAGTTGACCCATTATTATA+TGG 0.312812 7.2:+11598121 None:intergenic
GCTCGTATGGGACAGTTTCT+TGG 0.324940 7.2:-11599352 MS.gene20029:CDS
GGAAGCGTTGTTGTTGAGTA+TGG 0.328168 7.2:+11600446 None:intergenic
ATCTGCTCCCGTTCCAAATT+GGG 0.340346 7.2:-11598161 MS.gene20029:CDS
CGTTGATAGTTTGAGGACTC+TGG 0.357542 7.2:-11598438 MS.gene20029:intron
ACCCATTATTATATGGACTT+TGG 0.377342 7.2:+11598128 None:intergenic
TTATGTAGGTATATATATCT+TGG 0.380122 7.2:-11599190 MS.gene20029:intron
TTCTCTGCTGCAGCATCATC+AGG 0.380972 7.2:-11598085 MS.gene20029:CDS
CTGAGCATCAACCTCCAATC+TGG 0.386362 7.2:-11598368 MS.gene20029:CDS
ACCATTACACTCTTATCAAC+AGG 0.390876 7.2:+11598576 None:intergenic
GTTACTTTCTACCGGAGAAC+TGG 0.391369 7.2:-11600174 MS.gene20029:CDS
TCCAAAGTCCATATAATAAT+GGG 0.393361 7.2:-11598129 MS.gene20029:CDS
TTCTTCACCGGCTGAGGTCG+TGG 0.400221 7.2:+11600240 None:intergenic
GATGCTGCAGCAGAGAAATT+AGG 0.402479 7.2:+11598091 None:intergenic
TAATTACTTTCCCGTGTGTA+AGG 0.413461 7.2:-11598337 MS.gene20029:intron
CTCGTATGGGACAGTTTCTT+GGG 0.413776 7.2:-11599351 MS.gene20029:CDS
TATGTAGGTATATATATCTT+GGG 0.414146 7.2:-11599189 MS.gene20029:intron
TGCCATGCCCAATTTGGAAC+GGG 0.426003 7.2:+11598154 None:intergenic
GGGTGGAGGTATGTTATGTT+TGG 0.445569 7.2:+11598022 None:intergenic
ATTTGAACATCAGAGTTAGA+AGG 0.449742 7.2:+11598657 None:intergenic
GCCGGTGAAGAAGAGTCGTC+GGG 0.459593 7.2:-11600229 MS.gene20029:CDS
TGGACGATGGGAAGCTCGTA+TGG 0.459668 7.2:-11599365 MS.gene20029:CDS
CCTGCAGTAGAAAGAGGGTA+TGG 0.464065 7.2:+11597967 None:intergenic
TACAACAGCTTCGCCGGCGC+CGG 0.464183 7.2:+11600386 None:intergenic
GCAGAATCTTGATCTGAACT+TGG 0.465184 7.2:-11598691 MS.gene20029:CDS
CTATCCGCAGCTGTTGTTGA+AGG 0.465186 7.2:+11598058 None:intergenic
AAGAGCAATAGAGAATAGGA+TGG 0.477231 7.2:-11598185 MS.gene20029:CDS
ACTCTCCTCCGTCGTTCAGA+TGG 0.481608 7.2:-11600562 MS.gene20029:CDS
CTACCGGAGAACTGGACGTT+GGG 0.483697 7.2:-11600166 MS.gene20029:CDS
AGGAAAGAGCAATAGAGAAT+AGG 0.487980 7.2:-11598189 MS.gene20029:CDS
CCATACCCTCTTTCTACTGC+AGG 0.495357 7.2:-11597967 MS.gene20029:CDS
TTTGAGGCTAGTTCTTATGA+AGG 0.495376 7.2:-11598950 MS.gene20029:CDS
ACTGAAGATTCATGCTCTTA+CGG 0.496241 7.2:-11600492 MS.gene20029:CDS
TAGTACCATCGTTATCAGCC+TGG 0.496630 7.2:+11598915 None:intergenic
TGCTCTTACGGCGATGCATA+CGG 0.502837 7.2:-11600480 MS.gene20029:CDS
TGTCCGTACAACAGCTTCGC+CGG 0.508835 7.2:+11600380 None:intergenic
GTAGAAAGAGGGTATGGGGC+TGG 0.510625 7.2:+11597973 None:intergenic
ATCGTGGTGTTACTTTCTAC+CGG 0.518398 7.2:-11600182 MS.gene20029:CDS
TAATTAGTACCACTCCAGAT+TGG 0.520137 7.2:+11598354 None:intergenic
TGTTGCTCCACGACCTCAGC+CGG 0.520275 7.2:-11600247 MS.gene20029:CDS
CGACTCTTCTTCACCGGCTG+AGG 0.520783 7.2:+11600234 None:intergenic
AACATGCACCACAGTGGAAG+TGG 0.520906 7.2:-11598630 MS.gene20029:CDS
ATTCCCAACGTCCAGTTCTC+CGG 0.521427 7.2:+11600163 None:intergenic
ATGGGGCTGGAGTTAGTCGC+TGG 0.523340 7.2:+11597986 None:intergenic
TGAAGGAGAGTTAACTTCCC+AGG 0.523464 7.2:-11598933 MS.gene20029:CDS
GTCGCTGGAGTAGGAAAATG+AGG 0.525924 7.2:+11598001 None:intergenic
GAGCTTCAACACTCCGGCGC+CGG 0.528911 7.2:-11600399 MS.gene20029:CDS
CGGTACGCCACCGTGATGAT+CGG 0.529586 7.2:+11600284 None:intergenic
AGGTTGATGCTCAGATGCTA+TGG 0.530023 7.2:+11598377 None:intergenic
TGTGGAAAACAAGTATACTT+AGG 0.532079 7.2:-11600014 MS.gene20029:intron
CTGCTATAAAATGCAATGGA+AGG 0.535486 7.2:-11598988 MS.gene20029:CDS
CTGCAGTAGAAAGAGGGTAT+GGG 0.539113 7.2:+11597968 None:intergenic
CGATCATCACGGTGGCGTAC+CGG 0.539554 7.2:-11600283 MS.gene20029:CDS
CCCCGACGACTCTTCTTCAC+CGG 0.545486 7.2:+11600228 None:intergenic
CTGGAGTTAGTCGCTGGAGT+AGG 0.547085 7.2:+11597992 None:intergenic
GCCGGAGTGTTGAAGCTCAC+CGG 0.549298 7.2:+11600404 None:intergenic
GTTGATAGTTTGAGGACTCT+GGG 0.550553 7.2:-11598437 MS.gene20029:intron
GACAGAGTACTGGTTTCTCA+AGG 0.553049 7.2:-11599426 MS.gene20029:CDS
TCAGCTCCTGCAGTAGAAAG+AGG 0.553716 7.2:+11597961 None:intergenic
TGATTACAGAGCGTATGATA+AGG 0.555672 7.2:-11599011 MS.gene20029:intron
CTCCCGTTCCAAATTGGGCA+TGG 0.556092 7.2:-11598156 MS.gene20029:CDS
TTATGATGAAGATATAAAGC+AGG 0.557521 7.2:-11599679 MS.gene20029:intron
GCGCCGGCGAAGCTGTTGTA+CGG 0.557964 7.2:-11600383 MS.gene20029:CDS
TACTGCGAGCTTCGTGACCT+CGG 0.565421 7.2:+11600204 None:intergenic
ATCTGAACGACGGAGGAGAG+TGG 0.568541 7.2:+11600564 None:intergenic
ATTCTGCGTAGACAGAGTAC+TGG 0.571541 7.2:-11599436 MS.gene20029:CDS
GAGTAGGAAAATGAGGGTGG+AGG 0.571882 7.2:+11598008 None:intergenic
AGCCGGTGAAGAAGAGTCGT+CGG 0.574425 7.2:-11600230 MS.gene20029:CDS
GTTCAGATGGAAGATTCATC+CGG 0.575771 7.2:-11600549 MS.gene20029:CDS
CGAGCTGCGATAAAGTTTCG+TGG 0.575785 7.2:-11599735 MS.gene20029:CDS
TGCAGTAGAAAGAGGGTATG+GGG 0.576798 7.2:+11597969 None:intergenic
TATCCGCAGCTGTTGTTGAA+GGG 0.577107 7.2:+11598059 None:intergenic
TGCTATAAAATGCAATGGAA+GGG 0.577688 7.2:-11598987 MS.gene20029:CDS
CGCCTTCTGAGAGTAGAGGA+TGG 0.578820 7.2:-11600320 MS.gene20029:CDS
GTCGACAACGGTACTATCTC+CGG 0.580552 7.2:-11600423 MS.gene20029:CDS
TTACCTTGCCGCAGCATGCG+CGG 0.580853 7.2:+11599866 None:intergenic
TCTACCGGAGAACTGGACGT+TGG 0.583316 7.2:-11600167 MS.gene20029:CDS
ATACCGCGCATGCTGCGGCA+AGG 0.583419 7.2:-11599869 MS.gene20029:intron
GCAACAACAACAGTCTGCTC+CGG 0.583622 7.2:+11600264 None:intergenic
CAGAATCTTGATCTGAACTT+GGG 0.584312 7.2:-11598690 MS.gene20029:CDS
AAGGCTGCTATAAAATGCAA+TGG 0.584344 7.2:-11598992 MS.gene20029:CDS
TTAGTACCACTCCAGATTGG+AGG 0.585536 7.2:+11598357 None:intergenic
GACGGAGGAATCAAAGCTAC+CGG 0.588222 7.2:+11600530 None:intergenic
TTTGCAAGTTCAGCGTAACT+GGG 0.588454 7.2:-11598607 MS.gene20029:CDS
TCTGCATAAATGTGGACGAT+GGG 0.589018 7.2:-11599377 MS.gene20029:CDS
AGTACCATCGTTATCAGCCT+GGG 0.589962 7.2:+11598916 None:intergenic
AGAAGAGTCGTCGGGGACCG+AGG 0.591121 7.2:-11600221 MS.gene20029:CDS
ATCCATCCTCTACTCTCAGA+AGG 0.594152 7.2:+11600318 None:intergenic
CTGCCATGCCCAATTTGGAA+CGG 0.595613 7.2:+11598153 None:intergenic
GACGGAGGAGAGTGGAAGAG+AGG 0.597615 7.2:+11600572 None:intergenic
ATAGCGAGCTAGATGCTGCA+AGG 0.598807 7.2:-11599159 MS.gene20029:intron
ACAGAGTACTGGTTTCTCAA+GGG 0.599902 7.2:-11599425 MS.gene20029:CDS
ATTTGATACCGCGCATGCTG+CGG 0.600999 7.2:-11599874 MS.gene20029:CDS
CAGAGTACTGGTTTCTCAAG+GGG 0.605158 7.2:-11599424 MS.gene20029:CDS
AAAGTTTCGTGGCGTCGATG+CGG 0.606313 7.2:-11599724 MS.gene20029:CDS
GGACGATGGGAAGCTCGTAT+GGG 0.611195 7.2:-11599364 MS.gene20029:CDS
CAGCTCCTGCAGTAGAAAGA+GGG 0.613397 7.2:+11597962 None:intergenic
ATTAGTATTCACCTTACACA+CGG 0.613966 7.2:+11598326 None:intergenic
TGAACATCAGAGTTAGAAGG+AGG 0.614498 7.2:+11598660 None:intergenic
GCCTGTTGATAAGAGTGTAA+TGG 0.619307 7.2:-11598577 MS.gene20029:intron
AATTTCTCGTCCGATCATCA+CGG 0.619679 7.2:-11600294 MS.gene20029:CDS
AACAACGCTTCCGTCGACAA+CGG 0.620133 7.2:-11600435 MS.gene20029:CDS
GGAGTTACTCTGCATAAATG+TGG 0.624873 7.2:-11599385 MS.gene20029:CDS
CTCTGCATAAATGTGGACGA+TGG 0.629073 7.2:-11599378 MS.gene20029:CDS
ATCTCGCCTTCTGAGAGTAG+AGG 0.632485 7.2:-11600324 MS.gene20029:CDS
TCCGGTGAGCTTCAACACTC+CGG 0.632556 7.2:-11600405 MS.gene20029:CDS
GTAGATGAATAACTTTACAA+AGG 0.633971 7.2:-11599473 MS.gene20029:intron
TCACGAAGCTCGCAGTATCG+TGG 0.635514 7.2:-11600198 MS.gene20029:CDS
AGAGCATGAATCTTCAGTGT+CGG 0.641138 7.2:+11600497 None:intergenic
GGTTGATGCTCAGATGCTAT+GGG 0.641889 7.2:+11598378 None:intergenic
GTCGGCAGCGTTGACGACGG+AGG 0.642992 7.2:+11600515 None:intergenic
GCTGCAGCAGAGAAATTAGG+TGG 0.656992 7.2:+11598094 None:intergenic
CTGGAGTAGGAAAATGAGGG+TGG 0.661562 7.2:+11598005 None:intergenic
CATCAACCTCCAATCTGGAG+TGG 0.662314 7.2:-11598363 MS.gene20029:CDS
GGAGATAGTACCGTTGTCGA+CGG 0.663908 7.2:+11600425 None:intergenic
ATCTTCCATCTGAACGACGG+AGG 0.664445 7.2:+11600557 None:intergenic
AGTGTCGGCAGCGTTGACGA+CGG 0.674336 7.2:+11600512 None:intergenic
TTAGTATTCACCTTACACAC+GGG 0.680796 7.2:+11598327 None:intergenic
AGGGGAAGTTCTAAATACAG+AGG 0.681558 7.2:-11599406 MS.gene20029:CDS
ATTCCCTTCAACAACAGCTG+CGG 0.681754 7.2:-11598062 MS.gene20029:CDS
TGAATCTTCCATCTGAACGA+CGG 0.693422 7.2:+11600554 None:intergenic
TCGCTGGAGTAGGAAAATGA+GGG 0.701704 7.2:+11598002 None:intergenic
CCGGTGAAGAAGAGTCGTCG+GGG 0.715698 7.2:-11600228 MS.gene20029:CDS
TTCTCGTCCGATCATCACGG+TGG 0.718908 7.2:-11600291 MS.gene20029:CDS
ACTTCCCAGGCTGATAACGA+TGG 0.728400 7.2:-11598920 MS.gene20029:intron
ATGATGAACATGCACCACAG+TGG 0.729813 7.2:-11598636 MS.gene20029:CDS
CTTGCAAACCACTTCCACTG+TGG 0.732557 7.2:+11598622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCAAATTAAACTAA+AGG + chr7.2:11599251-11599270 None:intergenic 10.0%
!!! TATTTAGTTCTTAATTATAT+TGG - chr7.2:11599319-11599338 MS.gene20029:intron 10.0%
!! AAAGATCAAAATCTAAAAAA+AGG + chr7.2:11598646-11598665 None:intergenic 15.0%
!! ATGATCCAAAATATTTAATT+AGG + chr7.2:11599473-11599492 None:intergenic 15.0%
!! TATAATTAAGAACTAAATAC+TGG + chr7.2:11599318-11599337 None:intergenic 15.0%
!! TGATTATAAAACCAAAAAAA+AGG + chr7.2:11599693-11599712 None:intergenic 15.0%
!!! AAATGCCTAATTAAATATTT+TGG - chr7.2:11599465-11599484 MS.gene20029:CDS 15.0%
!!! TAAATATTGAATGTTTTTCA+TGG - chr7.2:11598758-11598777 MS.gene20029:intron 15.0%
!!! TCTTTGAAATTTAATTTTTC+AGG - chr7.2:11598661-11598680 MS.gene20029:CDS 15.0%
!! ATTATTTGTGTTCTATTTAC+AGG - chr7.2:11600352-11600371 MS.gene20029:CDS 20.0%
!! ATTTATCAATCATATATAGC+AGG - chr7.2:11599430-11599449 MS.gene20029:CDS 20.0%
!! TATGTAGGTATATATATCTT+GGG - chr7.2:11599372-11599391 MS.gene20029:CDS 20.0%
!! TTATGTAGGTATATATATCT+TGG - chr7.2:11599371-11599390 MS.gene20029:CDS 20.0%
!!! TTGAAATTTAATTTTTCAGG+TGG - chr7.2:11598664-11598683 MS.gene20029:CDS 20.0%
! AAAGTTGACCCATTATTATA+TGG + chr7.2:11600443-11600462 None:intergenic 25.0%
! AGGTTAATTGACATACTTTA+AGG + chr7.2:11599777-11599796 None:intergenic 25.0%
! AGTTCTTAATTATATTGGTC+TGG - chr7.2:11599324-11599343 MS.gene20029:intron 25.0%
! GTAGATGAATAACTTTACAA+AGG - chr7.2:11599088-11599107 MS.gene20029:intron 25.0%
! TCCAAAGTCCATATAATAAT+GGG - chr7.2:11600432-11600451 MS.gene20029:CDS 25.0%
! TTAACCTTTACTATTAAGAC+TGG - chr7.2:11599790-11599809 MS.gene20029:intron 25.0%
! TTATGATGAAGATATAAAGC+AGG - chr7.2:11598882-11598901 MS.gene20029:intron 25.0%
!! GTTCTTAATTATATTGGTCT+GGG - chr7.2:11599325-11599344 MS.gene20029:intron 25.0%
!! GTTGTTAATTATATTGGTCT+GGG - chr7.2:11599347-11599366 MS.gene20029:CDS 25.0%
!!! AAGAACTAAATACTGGTTTA+TGG + chr7.2:11599311-11599330 None:intergenic 25.0%
!!! AATCACAAATCAGTCATTTT+AGG + chr7.2:11599281-11599300 None:intergenic 25.0%
ACCCATTATTATATGGACTT+TGG + chr7.2:11600436-11600455 None:intergenic 30.0%
AGAGTGAGTGATAGTTTATA+TGG + chr7.2:11599740-11599759 None:intergenic 30.0%
ATATCTTAAGAATCTTCTGC+TGG - chr7.2:11600317-11600336 MS.gene20029:CDS 30.0%
ATCACCAGTCTTAATAGTAA+AGG + chr7.2:11599797-11599816 None:intergenic 30.0%
ATTAGTATTCACCTTACACA+CGG + chr7.2:11600238-11600257 None:intergenic 30.0%
ATTTGAACATCAGAGTTAGA+AGG + chr7.2:11599907-11599926 None:intergenic 30.0%
CTCCAAAGTCCATATAATAA+TGG - chr7.2:11600431-11600450 MS.gene20029:CDS 30.0%
GGTTGTTAATTATATTGGTC+TGG - chr7.2:11599346-11599365 MS.gene20029:CDS 30.0%
GTCTGGGTTGTTAATTATAT+TGG - chr7.2:11599341-11599360 MS.gene20029:intron 30.0%
TGCTATAAAATGCAATGGAA+GGG - chr7.2:11599574-11599593 MS.gene20029:intron 30.0%
TGTGGAAAACAAGTATACTT+AGG - chr7.2:11598547-11598566 MS.gene20029:intron 30.0%
! TACATGTTGTGTTATTGACT+TGG - chr7.2:11599515-11599534 MS.gene20029:intron 30.0%
! TTGATAAGAGTGTAATGGTA+AGG - chr7.2:11599989-11600008 MS.gene20029:intron 30.0%
!! TCTGTTTTCGTTTTTCTGTA+GGG - chr7.2:11598522-11598541 MS.gene20029:intron 30.0%
AAAAAAAAGGTGAGCCTCAA+TGG + chr7.2:11599680-11599699 None:intergenic 35.0%
AAGAGCAATAGAGAATAGGA+TGG - chr7.2:11600376-11600395 MS.gene20029:CDS 35.0%
AAGGCTGCTATAAAATGCAA+TGG - chr7.2:11599569-11599588 MS.gene20029:intron 35.0%
AATTCATGTGAAAGAGCAGA+GGG + chr7.2:11600061-11600080 None:intergenic 35.0%
ACAGAAAAACGAAAACAGAG+TGG + chr7.2:11598521-11598540 None:intergenic 35.0%
ACCATTACACTCTTATCAAC+AGG + chr7.2:11599988-11600007 None:intergenic 35.0%
ACTGAAGATTCATGCTCTTA+CGG - chr7.2:11598069-11598088 MS.gene20029:CDS 35.0%
AGGAAAGAGCAATAGAGAAT+AGG - chr7.2:11600372-11600391 MS.gene20029:CDS 35.0%
ATTTGGTTAGCATTTCGCAA+TGG - chr7.2:11598426-11598445 MS.gene20029:CDS 35.0%
CAGAATCTTGATCTGAACTT+GGG - chr7.2:11599871-11599890 MS.gene20029:CDS 35.0%
CTCAATGTTCAGTCATCTTA+TGG - chr7.2:11600156-11600175 MS.gene20029:CDS 35.0%
CTGCTATAAAATGCAATGGA+AGG - chr7.2:11599573-11599592 MS.gene20029:intron 35.0%
GTACTACTTATTGACCATTG+AGG - chr7.2:11599663-11599682 MS.gene20029:intron 35.0%
TAATTACTTTCCCGTGTGTA+AGG - chr7.2:11600224-11600243 MS.gene20029:CDS 35.0%
TAATTAGTACCACTCCAGAT+TGG + chr7.2:11600210-11600229 None:intergenic 35.0%
TGATTACAGAGCGTATGATA+AGG - chr7.2:11599550-11599569 MS.gene20029:intron 35.0%
TTAGTATTCACCTTACACAC+GGG + chr7.2:11600237-11600256 None:intergenic 35.0%
! ATATTGGTCTGGGTTTATGT+AGG - chr7.2:11599357-11599376 MS.gene20029:CDS 35.0%
! GGAAGCAGTTACAAATTTTG+AGG - chr7.2:11599595-11599614 MS.gene20029:intron 35.0%
! TTTGAGGCTAGTTCTTATGA+AGG - chr7.2:11599611-11599630 MS.gene20029:intron 35.0%
!! CTCTGTTTTCGTTTTTCTGT+AGG - chr7.2:11598521-11598540 MS.gene20029:intron 35.0%
!! TAATCTGCGTTGATAGTTTG+AGG - chr7.2:11600116-11600135 MS.gene20029:intron 35.0%
!!! ATTGAGGCTCACCTTTTTTT+TGG - chr7.2:11599679-11599698 MS.gene20029:intron 35.0%
AATTTCTCGTCCGATCATCA+CGG - chr7.2:11598267-11598286 MS.gene20029:intron 40.0%
AGAGCATGAATCTTCAGTGT+CGG + chr7.2:11598067-11598086 None:intergenic 40.0%
ATTCATGTGAAAGAGCAGAG+GGG + chr7.2:11600060-11600079 None:intergenic 40.0%
GAATTCATGTGAAAGAGCAG+AGG + chr7.2:11600062-11600081 None:intergenic 40.0%
GCAGAATCTTGATCTGAACT+TGG - chr7.2:11599870-11599889 MS.gene20029:CDS 40.0%
GGAGTTACTCTGCATAAATG+TGG - chr7.2:11599176-11599195 MS.gene20029:CDS 40.0%
GTTCAGATGGAAGATTCATC+CGG - chr7.2:11598012-11598031 MS.gene20029:CDS 40.0%
TCTGCATAAATGTGGACGAT+GGG - chr7.2:11599184-11599203 MS.gene20029:CDS 40.0%
TGAACATCAGAGTTAGAAGG+AGG + chr7.2:11599904-11599923 None:intergenic 40.0%
TGAATCTTCCATCTGAACGA+CGG + chr7.2:11598010-11598029 None:intergenic 40.0%
TTTGCAAGTTCAGCGTAACT+GGG - chr7.2:11599954-11599973 MS.gene20029:intron 40.0%
! CTTTTTCCAGCAAACGAATC+GGG - chr7.2:11598210-11598229 MS.gene20029:intron 40.0%
! GCCTGTTGATAAGAGTGTAA+TGG - chr7.2:11599984-11600003 MS.gene20029:intron 40.0%
!! ACAGAGTACTGGTTTCTCAA+GGG - chr7.2:11599136-11599155 MS.gene20029:intron 40.0%
!! AGGGGAAGTTCTAAATACAG+AGG - chr7.2:11599155-11599174 MS.gene20029:intron 40.0%
!! ATCGTGGTGTTACTTTCTAC+CGG - chr7.2:11598379-11598398 MS.gene20029:CDS 40.0%
!! GCTTTTTCCAGCAAACGAAT+CGG - chr7.2:11598209-11598228 MS.gene20029:intron 40.0%
!! GTTGATAGTTTGAGGACTCT+GGG - chr7.2:11600124-11600143 MS.gene20029:intron 40.0%
!! TCGTTTTTCTGTAGGGATTG+TGG - chr7.2:11598529-11598548 MS.gene20029:intron 40.0%
AATCTGCTCCCGTTCCAAAT+TGG - chr7.2:11600399-11600418 MS.gene20029:CDS 45.0%
AGTACCATCGTTATCAGCCT+GGG + chr7.2:11599648-11599667 None:intergenic 45.0%
ATCCATCCTCTACTCTCAGA+AGG + chr7.2:11598246-11598265 None:intergenic 45.0%
ATCTGCTCCCGTTCCAAATT+GGG - chr7.2:11600400-11600419 MS.gene20029:CDS 45.0%
ATGATGAACATGCACCACAG+TGG - chr7.2:11599925-11599944 MS.gene20029:intron 45.0%
ATTCCCTTCAACAACAGCTG+CGG - chr7.2:11600499-11600518 MS.gene20029:CDS 45.0%
ATTCTGCGTAGACAGAGTAC+TGG - chr7.2:11599125-11599144 MS.gene20029:intron 45.0%
CTCGTATGGGACAGTTTCTT+GGG - chr7.2:11599210-11599229 MS.gene20029:intron 45.0%
CTCTGCATAAATGTGGACGA+TGG - chr7.2:11599183-11599202 MS.gene20029:CDS 45.0%
GACGTTGGGAATCGCATATT+TGG - chr7.2:11598409-11598428 MS.gene20029:CDS 45.0%
GATGCTGCAGCAGAGAAATT+AGG + chr7.2:11600473-11600492 None:intergenic 45.0%
GTTTGCAAGTTCAGCGTAAC+TGG - chr7.2:11599953-11599972 MS.gene20029:intron 45.0%
TAGTACCATCGTTATCAGCC+TGG + chr7.2:11599649-11599668 None:intergenic 45.0%
TATCCGCAGCTGTTGTTGAA+GGG + chr7.2:11600505-11600524 None:intergenic 45.0%
TCGCTGGAGTAGGAAAATGA+GGG + chr7.2:11600562-11600581 None:intergenic 45.0%
TGAAGGAGAGTTAACTTCCC+AGG - chr7.2:11599628-11599647 MS.gene20029:intron 45.0%
TTAGTACCACTCCAGATTGG+AGG + chr7.2:11600207-11600226 None:intergenic 45.0%
! ATCATTCCCGATTCGTTTGC+TGG + chr7.2:11598219-11598238 None:intergenic 45.0%
! CTGCAGTAGAAAGAGGGTAT+GGG + chr7.2:11600596-11600615 None:intergenic 45.0%
! GGGTGGAGGTATGTTATGTT+TGG + chr7.2:11600542-11600561 None:intergenic 45.0%
! GGTTGATGCTCAGATGCTAT+GGG + chr7.2:11600186-11600205 None:intergenic 45.0%
! GTTACTTTCTACCGGAGAAC+TGG - chr7.2:11598387-11598406 MS.gene20029:CDS 45.0%
! TGCAGTAGAAAGAGGGTATG+GGG + chr7.2:11600595-11600614 None:intergenic 45.0%
!! AGGTTGATGCTCAGATGCTA+TGG + chr7.2:11600187-11600206 None:intergenic 45.0%
!! CAGAGTACTGGTTTCTCAAG+GGG - chr7.2:11599137-11599156 MS.gene20029:intron 45.0%
!! CGTTGATAGTTTGAGGACTC+TGG - chr7.2:11600123-11600142 MS.gene20029:intron 45.0%
!! GACAGAGTACTGGTTTCTCA+AGG - chr7.2:11599135-11599154 MS.gene20029:intron 45.0%
!! GGAAGCGTTGTTGTTGAGTA+TGG + chr7.2:11598118-11598137 None:intergenic 45.0%
AACAACGCTTCCGTCGACAA+CGG - chr7.2:11598126-11598145 MS.gene20029:CDS 50.0%
AACATGCACCACAGTGGAAG+TGG - chr7.2:11599931-11599950 MS.gene20029:intron 50.0%
ATAGCGAGCTAGATGCTGCA+AGG - chr7.2:11599402-11599421 MS.gene20029:CDS 50.0%
ATCTTCCATCTGAACGACGG+AGG + chr7.2:11598007-11598026 None:intergenic 50.0%
ATTCCCAACGTCCAGTTCTC+CGG + chr7.2:11598401-11598420 None:intergenic 50.0%
ATTTGATACCGCGCATGCTG+CGG - chr7.2:11598687-11598706 MS.gene20029:CDS 50.0%
CAGCTCCTGCAGTAGAAAGA+GGG + chr7.2:11600602-11600621 None:intergenic 50.0%
CATCAACCTCCAATCTGGAG+TGG - chr7.2:11600198-11600217 MS.gene20029:CDS 50.0%
CCATACCCTCTTTCTACTGC+AGG - chr7.2:11600594-11600613 MS.gene20029:CDS 50.0%
CCTGCAGTAGAAAGAGGGTA+TGG + chr7.2:11600597-11600616 None:intergenic 50.0%
CGAGCTGCGATAAAGTTTCG+TGG - chr7.2:11598826-11598845 MS.gene20029:intron 50.0%
CTATCCGCAGCTGTTGTTGA+AGG + chr7.2:11600506-11600525 None:intergenic 50.0%
CTGAGCATCAACCTCCAATC+TGG - chr7.2:11600193-11600212 MS.gene20029:CDS 50.0%
CTGCCATGCCCAATTTGGAA+CGG + chr7.2:11600411-11600430 None:intergenic 50.0%
CTGGAGTAGGAAAATGAGGG+TGG + chr7.2:11600559-11600578 None:intergenic 50.0%
CTTGCAAACCACTTCCACTG+TGG + chr7.2:11599942-11599961 None:intergenic 50.0%
GACGGAGGAATCAAAGCTAC+CGG + chr7.2:11598034-11598053 None:intergenic 50.0%
GAGTAGGAAAATGAGGGTGG+AGG + chr7.2:11600556-11600575 None:intergenic 50.0%
GCAACAACAACAGTCTGCTC+CGG + chr7.2:11598300-11598319 None:intergenic 50.0%
GCTCGTATGGGACAGTTTCT+TGG - chr7.2:11599209-11599228 MS.gene20029:intron 50.0%
GCTGCAGCAGAGAAATTAGG+TGG + chr7.2:11600470-11600489 None:intergenic 50.0%
GGAGATAGTACCGTTGTCGA+CGG + chr7.2:11598139-11598158 None:intergenic 50.0%
GTCGACAACGGTACTATCTC+CGG - chr7.2:11598138-11598157 MS.gene20029:CDS 50.0%
GTCGCTGGAGTAGGAAAATG+AGG + chr7.2:11600563-11600582 None:intergenic 50.0%
TCAGCTCCTGCAGTAGAAAG+AGG + chr7.2:11600603-11600622 None:intergenic 50.0%
TGCTCTTACGGCGATGCATA+CGG - chr7.2:11598081-11598100 MS.gene20029:CDS 50.0%
TTCTCTGCTGCAGCATCATC+AGG - chr7.2:11600476-11600495 MS.gene20029:CDS 50.0%
! ACTTCCCAGGCTGATAACGA+TGG - chr7.2:11599641-11599660 MS.gene20029:intron 50.0%
! ATCTCGCCTTCTGAGAGTAG+AGG - chr7.2:11598237-11598256 MS.gene20029:intron 50.0%
! TGCCATGCCCAATTTGGAAC+GGG + chr7.2:11600410-11600429 None:intergenic 50.0%
!! AAAGTTTCGTGGCGTCGATG+CGG - chr7.2:11598837-11598856 MS.gene20029:intron 50.0%
ACTCTCCTCCGTCGTTCAGA+TGG - chr7.2:11597999-11598018 MS.gene20029:CDS 55.0%
AGCCGGTGAAGAAGAGTCGT+CGG - chr7.2:11598331-11598350 MS.gene20029:intron 55.0%
ATCTGAACGACGGAGGAGAG+TGG + chr7.2:11598000-11598019 None:intergenic 55.0%
CTACCGGAGAACTGGACGTT+GGG - chr7.2:11598395-11598414 MS.gene20029:CDS 55.0%
CTCCCGTTCCAAATTGGGCA+TGG - chr7.2:11600405-11600424 MS.gene20029:CDS 55.0%
CTGGAGTTAGTCGCTGGAGT+AGG + chr7.2:11600572-11600591 None:intergenic 55.0%
GGACGATGGGAAGCTCGTAT+GGG - chr7.2:11599197-11599216 MS.gene20029:intron 55.0%
TACTGCGAGCTTCGTGACCT+CGG + chr7.2:11598360-11598379 None:intergenic 55.0%
TCACGAAGCTCGCAGTATCG+TGG - chr7.2:11598363-11598382 MS.gene20029:CDS 55.0%
TCCGGTGAGCTTCAACACTC+CGG - chr7.2:11598156-11598175 MS.gene20029:CDS 55.0%
TCTACCGGAGAACTGGACGT+TGG - chr7.2:11598394-11598413 MS.gene20029:CDS 55.0%
TGGACGATGGGAAGCTCGTA+TGG - chr7.2:11599196-11599215 MS.gene20029:intron 55.0%
TGGAGCTGCCATGCCCAATT+TGG + chr7.2:11600416-11600435 None:intergenic 55.0%
TGTCCGTACAACAGCTTCGC+CGG + chr7.2:11598184-11598203 None:intergenic 55.0%
TTCTCGTCCGATCATCACGG+TGG - chr7.2:11598270-11598289 MS.gene20029:intron 55.0%
! CGCCTTCTGAGAGTAGAGGA+TGG - chr7.2:11598241-11598260 MS.gene20029:intron 55.0%
! GTAGAAAGAGGGTATGGGGC+TGG + chr7.2:11600591-11600610 None:intergenic 55.0%
! TGAAAGAGCAGAGGGGCATG+AGG + chr7.2:11600053-11600072 None:intergenic 55.0%
ATGGGGCTGGAGTTAGTCGC+TGG + chr7.2:11600578-11600597 None:intergenic 60.0%
CCCCGACGACTCTTCTTCAC+CGG + chr7.2:11598336-11598355 None:intergenic 60.0%
CCGGTGAAGAAGAGTCGTCG+GGG - chr7.2:11598333-11598352 MS.gene20029:intron 60.0%
CGATCATCACGGTGGCGTAC+CGG - chr7.2:11598278-11598297 MS.gene20029:intron 60.0%
CGGTACGCCACCGTGATGAT+CGG + chr7.2:11598280-11598299 None:intergenic 60.0%
GACGGAGGAGAGTGGAAGAG+AGG + chr7.2:11597992-11598011 None:intergenic 60.0%
GCCGGTGAAGAAGAGTCGTC+GGG - chr7.2:11598332-11598351 MS.gene20029:intron 60.0%
TGTTGCTCCACGACCTCAGC+CGG - chr7.2:11598314-11598333 MS.gene20029:intron 60.0%
TTACCTTGCCGCAGCATGCG+CGG + chr7.2:11598698-11598717 None:intergenic 60.0%
! CGACTCTTCTTCACCGGCTG+AGG + chr7.2:11598330-11598349 None:intergenic 60.0%
! TTCTTCACCGGCTGAGGTCG+TGG + chr7.2:11598324-11598343 None:intergenic 60.0%
!! AGTGTCGGCAGCGTTGACGA+CGG + chr7.2:11598052-11598071 None:intergenic 60.0%
!! GCCGGAGTGTTGAAGCTCAC+CGG + chr7.2:11598160-11598179 None:intergenic 60.0%
AGAAGAGTCGTCGGGGACCG+AGG - chr7.2:11598340-11598359 MS.gene20029:CDS 65.0%
ATACCGCGCATGCTGCGGCA+AGG - chr7.2:11598692-11598711 MS.gene20029:CDS 65.0%
GAGCTTCAACACTCCGGCGC+CGG - chr7.2:11598162-11598181 MS.gene20029:CDS 65.0%
TACAACAGCTTCGCCGGCGC+CGG + chr7.2:11598178-11598197 None:intergenic 65.0%
! GCGCCGGCGAAGCTGTTGTA+CGG - chr7.2:11598178-11598197 MS.gene20029:CDS 65.0%
!! GTCGGCAGCGTTGACGACGG+AGG + chr7.2:11598049-11598068 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 11597961 11600622 11597961 ID=MS.gene20029
chr7.2 mRNA 11597961 11600622 11597961 ID=MS.gene20029.t1;Parent=MS.gene20029
chr7.2 exon 11600153 11600622 11600153 ID=MS.gene20029.t1.exon1;Parent=MS.gene20029.t1
chr7.2 CDS 11600153 11600622 11600153 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11600015 11600040 11600015 ID=MS.gene20029.t1.exon2;Parent=MS.gene20029.t1
chr7.2 CDS 11600015 11600040 11600015 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11599870 11599900 11599870 ID=MS.gene20029.t1.exon3;Parent=MS.gene20029.t1
chr7.2 CDS 11599870 11599900 11599870 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11599680 11599767 11599680 ID=MS.gene20029.t1.exon4;Parent=MS.gene20029.t1
chr7.2 CDS 11599680 11599767 11599680 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11599346 11599491 11599346 ID=MS.gene20029.t1.exon5;Parent=MS.gene20029.t1
chr7.2 CDS 11599346 11599491 11599346 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11599160 11599204 11599160 ID=MS.gene20029.t1.exon6;Parent=MS.gene20029.t1
chr7.2 CDS 11599160 11599204 11599160 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11598921 11599024 11598921 ID=MS.gene20029.t1.exon7;Parent=MS.gene20029.t1
chr7.2 CDS 11598921 11599024 11598921 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11598578 11598720 11598578 ID=MS.gene20029.t1.exon8;Parent=MS.gene20029.t1
chr7.2 CDS 11598578 11598720 11598578 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11598338 11598451 11598338 ID=MS.gene20029.t1.exon9;Parent=MS.gene20029.t1
chr7.2 CDS 11598338 11598451 11598338 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
chr7.2 exon 11597961 11598209 11597961 ID=MS.gene20029.t1.exon10;Parent=MS.gene20029.t1
chr7.2 CDS 11597961 11598209 11597961 ID=cds.MS.gene20029.t1;Parent=MS.gene20029.t1
Gene Sequence

>MS.gene20029

ATGTTGGATCTCAATCTCAACGCTGATTCCTCTCTTCCACTCTCCTCCGTCGTTCAGATGGAAGATTCATCCGGTAGCTTTGATTCCTCCGTCGTCAACGCTGCCGACACTGAAGATTCATGCTCTTACGGCGATGCATACGGTTACAACTTCGCCATACTCAACAACAACGCTTCCGTCGACAACGGTACTATCTCCGGTGAGCTTCAACACTCCGGCGCCGGCGAAGCTGTTGTACGGACAATTCAGCTTTTTCCAGCAAACGAATCGGGAATGATCTCGCCTTCTGAGAGTAGAGGATGGATGAATTTCTCGTCCGATCATCACGGTGGCGTACCGGAGCAGACTGTTGTTGTTGCTCCACGACCTCAGCCGGTGAAGAAGAGTCGTCGGGGACCGAGGTCACGAAGCTCGCAGTATCGTGGTGTTACTTTCTACCGGAGAACTGGACGTTGGGAATCGCATATTTGGTTAGCATTTCGCAATGGATCATTCTGTTTCTTCGTAGTTCAGTTCATTCAGTTTAGTTTTCACTTTCTGCATTTTTGTTTCTGAATCCACTCTGTTTTCGTTTTTCTGTAGGGATTGTGGAAAACAAGTATACTTAGGTGAGAAATCAACACTGATTAAGTGATTATTTGAGACGATTTCGTTGTTTTATTTTACGTTCTTGATCGTTCTTCCTTTTTTTAGATTTTGATCTTTGAAATTTAATTTTTCAGGTGGATTTGATACCGCGCATGCTGCGGCAAGGTAATTTTCATATTTGAATATTTTTTATATATTAATTATTTTTTTAAATATTGAATGTTTTTCATGGATTTATTTTTGTTTTTTTGTATGATTTATTTTCAGAGCATATGATCGAGCTGCGATAAAGTTTCGTGGCGTCGATGCGGATATTAATTTCAATGTCAGTGATTATGATGAAGATATAAAGCAGGTTTGTGAGAATTTGTTATTACTAATGTTGTGTTGATCTTGTTTAAAATCTGATTGTAAGTTAGTATAATTGTAGCTTTAACTTTGATTCTATTGAAGTGTAGATGAGTAATTTTTGAGATGATCTATTTTAAAATTTGAATGTTAAGTTCTAATTGTAGCATAAACTTTGATTTTATTGTTGTGTAGATGAATAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGTTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTAAGAAAATCCTTTAGTTTAATTTGATTTATTAGTTGAACCTAAAATGACTGATTTGTGATTTATTTAACCATAAACCAGTATTTAGTTCTTAATTATATTGGTCTGGGTTGTTAATTATATTGGTCTGGGTTTATGTAGGTATATATATCTTGGGCTTTTTGATAGCGAGCTAGATGCTGCAAGGTTTTAATTTATCAATCATATATAGCAGGATATCTCAAATGAAATGCCTAATTAAATATTTTGGATCATTTCACTTTTATATTTTCTTTTCTACATGTTGTGTTATTGACTTGGTTGCTCTATTGATGATTACAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTTGAGGCTAGTTCTTATGAAGGAGAGTTAACTTCCCAGGCTGATAACGATGGTACTACTTATTGACCATTGAGGCTCACCTTTTTTTTGGTTTTATAATCAAATTGAATAAAACATCAATTTAGTCCATATAAACTATCACTCACTCTCTAATTTAGTCAGTCCTTAAAGTATGTCAATTAACCTTTACTATTAAGACTGGTGATTTAACTATGACGTGAAATGCAATGATGTATTTTGTGCTTTATTCAGATATCAAGCAGAATCTTGATCTGAACTTGGGTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCACCACAGTGGAAGTGGTTTGCAAGTTCAGCGTAACTGGGATGATATGCCTGTTGATAAGAGTGTAATGGTAAGGTCAAAAAAAAAAAAATTTTTTATATTAATTCTGCAATTCCTCATGCCCCTCTGCTCTTTCACATGAATTCAAAGTTTGCATACTTAACTTGCATCATATATTTTTAATCTGCGTTGATAGTTTGAGGACTCTGGGTCAAGATCACTCAATGTTCAGTCATCTTATGGCTTTCCCATAGCATCTGAGCATCAACCTCCAATCTGGAGTGGTACTAATTACTTTCCCGTGTGTAAGGTGAATACTAATTTTGCTTTAGTATCTTCTGCTAGTTATGAATTATCACTGTTCAATTTGATTTTGCTTCAATATCTTAAGAATCTTCTGCTGGTTATGAATTATGATTATTTGTGTTCTATTTACAGGAAAGAGCAATAGAGAATAGGATGGAATCTGCTCCCGTTCCAAATTGGGCATGGCAGCTCCAAAGTCCATATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAACAGCTGCGGATAGTCAGATTCATTTTCCAAACATAACATACCTCCACCCTCATTTTCCTACTCCAGCGACTAACTCCAGCCCCATACCCTCTTTCTACTGCAGGAGCTGA
Protein sequence

>MS.gene20029.t1

MLDLNLNADSSLPLSSVVQMEDSSGSFDSSVVNAADTEDSCSYGDAYGYNFAILNNNASVDNGTISGELQHSGAGEAVVRTIQLFPANESGMISPSESRGWMNFSSDHHGGVPEQTVVVAPRPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMNNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHSGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPIWSGTNYFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPATNSSPIPSFYCRS