Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20149.t1 | XP_003630667.2 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 2.40E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20149.t1 | O82197 | 77.2 | 219 | 38 | 6 | 7 | 222 | 4 | 213 | 1.5e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20149.t1 | G7LJN0 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 1.7e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene20149 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene20149 | -0.81561 | 8.46E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene20149 | 0.818074 | 2.37E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene20149 | 0.842747 | 2.14E-58 | -1.69E-46 |
| MS.gene051275 | MS.gene20149 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene20149 | 0.845055 | 5.15E-59 | -1.69E-46 |
| MS.gene051655 | MS.gene20149 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene052493 | MS.gene20149 | 0.845282 | 4.48E-59 | -1.69E-46 |
| MS.gene052674 | MS.gene20149 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene20149 | 0.833424 | 5.38E-56 | -1.69E-46 |
| MS.gene053879 | MS.gene20149 | 0.826647 | 2.42E-54 | -1.69E-46 |
| MS.gene054222 | MS.gene20149 | 0.802623 | 5.14E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene20149 | 0.816555 | 5.21E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene20149 | 0.85821 | 9.63E-63 | -1.69E-46 |
| MS.gene054893 | MS.gene20149 | 0.86197 | 7.06E-64 | -1.69E-46 |
| MS.gene055864 | MS.gene20149 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene057155 | MS.gene20149 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene20149 | 0.802366 | 5.80E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene20149 | 0.824663 | 7.14E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene20149 | 0.858187 | 9.79E-63 | -1.69E-46 |
| MS.gene05952 | MS.gene20149 | 0.810767 | 9.78E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene20149 | 0.859773 | 3.28E-63 | -1.69E-46 |
| MS.gene060412 | MS.gene20149 | 0.80984 | 1.55E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene20149 | 0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene20149 | 0.832612 | 8.56E-56 | -1.69E-46 |
| MS.gene060852 | MS.gene20149 | 0.828921 | 6.87E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene20149 | 0.834022 | 3.81E-56 | -1.69E-46 |
| MS.gene06123 | MS.gene20149 | 0.829166 | 5.99E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20149.t1 | MTR_8g102030 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 2.31e-160 | 442 |
| MS.gene20149.t1 | MTR_6g090515 | 81.364 | 220 | 39 | 2 | 5 | 222 | 1 | 220 | 1.07e-105 | 304 |
| MS.gene20149.t1 | MTR_8g102020 | 67.411 | 224 | 52 | 5 | 1 | 222 | 1 | 205 | 1.91e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20149.t1 | AT2G19830 | 77.027 | 222 | 38 | 7 | 5 | 222 | 1 | 213 | 6.22e-98 | 284 |
| MS.gene20149.t1 | AT4G29160 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 7.69e-93 | 271 |
| MS.gene20149.t1 | AT4G29160 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 7.69e-93 | 271 |
| MS.gene20149.t1 | AT2G19830 | 79.293 | 198 | 31 | 5 | 28 | 222 | 4 | 194 | 6.48e-90 | 263 |
| MS.gene20149.t1 | AT4G29160 | 80.000 | 180 | 33 | 3 | 46 | 222 | 13 | 192 | 9.44e-83 | 244 |
Find 47 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAGAGCCAAGAATAAA+AGG | 0.227877 | 4.4:+3758511 | MS.gene20149:CDS |
| ACTTGGAATGCTAGAGAAAA+AGG | 0.296376 | 4.4:+3758437 | MS.gene20149:CDS |
| GGAGAGCGTGCTTCTTAAAA+AGG | 0.301195 | 4.4:+3758458 | MS.gene20149:CDS |
| GGGACATGCACAGAGGCTTC+TGG | 0.308869 | 4.4:-3761370 | None:intergenic |
| TGAGAACATGAAACAGATTC+AGG | 0.382236 | 4.4:+3761092 | MS.gene20149:CDS |
| GCCCACTCCTGAGGAAGAAT+TGG | 0.390463 | 4.4:+3761426 | MS.gene20149:CDS |
| GCTTCTGGAGTTGTAATTGC+AGG | 0.391518 | 4.4:-3761355 | None:intergenic |
| GGACGAGTAGGCCGCCTAGC+TGG | 0.394730 | 4.4:-3761391 | None:intergenic |
| TACTGTTTCTGTGGTTGCCT+TGG | 0.415099 | 4.4:-3760609 | None:intergenic |
| CCAGTTGCGTATTCATGATC+AGG | 0.417336 | 4.4:+3759333 | MS.gene20149:CDS |
| AGCTAGGCGGCCTACTCGTC+CGG | 0.432309 | 4.4:+3761393 | MS.gene20149:CDS |
| GAATTATTGTCCGCTCCAAT+TGG | 0.445452 | 4.4:+3761114 | MS.gene20149:CDS |
| TTCTAAAGTTGATAGAGTAT+TGG | 0.445759 | 4.4:-3758077 | None:intergenic |
| CACAAGAGCCAAGAATAAAA+GGG | 0.447210 | 4.4:+3758512 | MS.gene20149:CDS |
| AAATCAGCAGCTGCACCAAT+TGG | 0.448641 | 4.4:-3761129 | None:intergenic |
| GGCAGCTTTGCAAGCTGAGA+TGG | 0.454546 | 4.4:+3761447 | MS.gene20149:CDS |
| ACAGTAGCCGCATTGAGAAC+TGG | 0.461367 | 4.4:+3760626 | MS.gene20149:CDS |
| AGAGCTAGAGGGTGCTGAGT+TGG | 0.470621 | 4.4:+3761315 | MS.gene20149:CDS |
| GCCAATTCTTCCTCAGGAGT+GGG | 0.471301 | 4.4:-3761427 | None:intergenic |
| AAAGCTGCCAATTCTTCCTC+AGG | 0.474769 | 4.4:-3761433 | None:intergenic |
| GGCTGCAGCTGAAGTTGAAA+GGG | 0.480403 | 4.4:+3758479 | MS.gene20149:CDS |
| CGGCGATACAATGTTTGAAA+AGG | 0.488220 | 4.4:+3759269 | MS.gene20149:CDS |
| CCTGATCATGAATACGCAAC+TGG | 0.506321 | 4.4:-3759333 | None:intergenic |
| AGGCTGCAGCTGAAGTTGAA+AGG | 0.506350 | 4.4:+3758478 | MS.gene20149:CDS |
| GACGAGTAGGCCGCCTAGCT+GGG | 0.521270 | 4.4:-3761390 | None:intergenic |
| TACAATGTTTGAAAAGGAAG+AGG | 0.525703 | 4.4:+3759275 | MS.gene20149:CDS |
| CCTCTGTGCATGTCCCAGCT+AGG | 0.540963 | 4.4:+3761377 | MS.gene20149:CDS |
| CTGTTCGTTAATCTCATCCA+TGG | 0.550173 | 4.4:-3761067 | None:intergenic |
| TGCCAATTCTTCCTCAGGAG+TGG | 0.551831 | 4.4:-3761428 | None:intergenic |
| TTTGTATGCACCGGACGAGT+AGG | 0.560328 | 4.4:-3761403 | None:intergenic |
| GCTTGAATTATGTAGACACT+TGG | 0.569639 | 4.4:+3758420 | MS.gene20149:intron |
| TGTGTTACAGATGATAATGC+TGG | 0.571958 | 4.4:+3760580 | MS.gene20149:intron |
| CAATGCGGCTACTGTTTCTG+TGG | 0.580774 | 4.4:-3760618 | None:intergenic |
| AGCAGAACTTGAAGAGCTAG+AGG | 0.585998 | 4.4:+3761303 | MS.gene20149:CDS |
| GATAATGCTGGAAGGTGCCA+AGG | 0.586807 | 4.4:+3760592 | MS.gene20149:CDS |
| GAACAGCAAGTAGAGCAGCT+TGG | 0.594879 | 4.4:+3759304 | MS.gene20149:CDS |
| GGAGTGGGCTTTGTATGCAC+CGG | 0.596065 | 4.4:-3761412 | None:intergenic |
| TAATGATGTTGATGCGACCA+TGG | 0.625933 | 4.4:+3761050 | MS.gene20149:CDS |
| ACAAGAGCCAAGAATAAAAG+GGG | 0.640430 | 4.4:+3758513 | MS.gene20149:CDS |
| AGCAGCTGCACCAATTGGAG+CGG | 0.641867 | 4.4:-3761124 | None:intergenic |
| GCAGAACTTGAAGAGCTAGA+GGG | 0.644080 | 4.4:+3761304 | MS.gene20149:CDS |
| GCATACAAAGCCCACTCCTG+AGG | 0.653225 | 4.4:+3761417 | MS.gene20149:CDS |
| AGCCGCATTGAGAACTGGAG+CGG | 0.658271 | 4.4:+3760631 | MS.gene20149:CDS |
| CTGTGCATGTCCCAGCTAGG+CGG | 0.671027 | 4.4:+3761380 | MS.gene20149:CDS |
| CCTAGCTGGGACATGCACAG+AGG | 0.679296 | 4.4:-3761377 | None:intergenic |
| TTACAGATGATAATGCTGGA+AGG | 0.735879 | 4.4:+3760584 | MS.gene20149:intron |
| AGCCGCTCCAGTTCTCAATG+CGG | 0.737111 | 4.4:-3760633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATATTATTTAA+AGG | + | chr4.4:3760334-3760353 | MS.gene20149:intron | 0.0% |
| !! | AAACATGTATAAATAAATAA+AGG | + | chr4.4:3760096-3760115 | MS.gene20149:intron | 10.0% |
| !! | GTAAACAAATATTATATTTA+CGG | + | chr4.4:3760062-3760081 | MS.gene20149:intron | 10.0% |
| !! | TAAACAAATATTATATTTAC+GGG | + | chr4.4:3760063-3760082 | MS.gene20149:intron | 10.0% |
| !! | TATAATTATATATCATTACT+AGG | - | chr4.4:3760037-3760056 | None:intergenic | 10.0% |
| !!! | TATTATTTATAAGTTTGTTA+AGG | - | chr4.4:3759716-3759735 | None:intergenic | 10.0% |
| !! | AAAACTTATCTATAGAAATT+TGG | - | chr4.4:3759107-3759126 | None:intergenic | 15.0% |
| !! | GTAATAAATCAATTGAATTA+TGG | - | chr4.4:3760141-3760160 | None:intergenic | 15.0% |
| !! | TACTTATTATGTGAAATATT+CGG | + | chr4.4:3761240-3761259 | MS.gene20149:intron | 15.0% |
| !!! | ACTTTTTTAAAGAATATAAG+TGG | + | chr4.4:3758557-3758576 | MS.gene20149:intron | 15.0% |
| !!! | CATATTGATTCTAAATAAAT+TGG | + | chr4.4:3760297-3760316 | MS.gene20149:intron | 15.0% |
| !!! | CTTTTTTAAAGAATATAAGT+GGG | + | chr4.4:3758558-3758577 | MS.gene20149:intron | 15.0% |
| !!! | GTTTATATTATATTGCTATT+CGG | + | chr4.4:3758207-3758226 | MS.gene20149:intron | 15.0% |
| !!! | TTGCAATATTATATTTTTTC+AGG | + | chr4.4:3761022-3761041 | MS.gene20149:intron | 15.0% |
| !!! | TTTGTTTCCATATATTATTT+TGG | + | chr4.4:3758600-3758619 | MS.gene20149:intron | 15.0% |
| !! | AAGTTCTCCAAAATAATATA+TGG | - | chr4.4:3758610-3758629 | None:intergenic | 20.0% |
| !! | AATAATATATGGAAACAAAC+AGG | - | chr4.4:3758599-3758618 | None:intergenic | 20.0% |
| !! | ATAATATATGGAAACAAACA+GGG | - | chr4.4:3758598-3758617 | None:intergenic | 20.0% |
| !! | ATCTACGTTAATATACAAAA+TGG | - | chr4.4:3759519-3759538 | None:intergenic | 20.0% |
| !! | TAAAAAAACAGTGCAAAAAA+TGG | - | chr4.4:3760430-3760449 | None:intergenic | 20.0% |
| !! | TTGTATATTAACGTAGATAT+AGG | + | chr4.4:3759521-3759540 | MS.gene20149:intron | 20.0% |
| !! | TTTATAATATTCTTCTGATG+TGG | + | chr4.4:3760920-3760939 | MS.gene20149:intron | 20.0% |
| !!! | AACTTTAGAAAAATTAAGTG+AGG | + | chr4.4:3758090-3758109 | MS.gene20149:CDS | 20.0% |
| !!! | ACATTCATTATTTTCAAAAG+TGG | + | chr4.4:3759405-3759424 | MS.gene20149:intron | 20.0% |
| !!! | ATTCTTTAAAAAAGTATCCA+TGG | - | chr4.4:3758552-3758571 | None:intergenic | 20.0% |
| !!! | ATTTTTTGCACTGTTTTTTT+AGG | + | chr4.4:3760429-3760448 | MS.gene20149:intron | 20.0% |
| !!! | CAATTGATTTATTACATTAC+TGG | + | chr4.4:3760146-3760165 | MS.gene20149:intron | 20.0% |
| !!! | TAATAATGGATTTCTAAAGA+GGG | - | chr4.4:3759176-3759195 | None:intergenic | 20.0% |
| !!! | TATTTTGAGCTTATGAATAT+AGG | + | chr4.4:3759562-3759581 | MS.gene20149:intron | 20.0% |
| !!! | TTCTTTAAAAAAGTATCCAT+GGG | - | chr4.4:3758551-3758570 | None:intergenic | 20.0% |
| !!! | TTTTTTGCACTGTTTTTTTA+GGG | + | chr4.4:3760430-3760449 | MS.gene20149:intron | 20.0% |
| !!! | TTTTTTTGTAGAAAATTGAC+AGG | - | chr4.4:3759858-3759877 | None:intergenic | 20.0% |
| ! | AAAATAATGAATGTAACTGC+TGG | - | chr4.4:3759399-3759418 | None:intergenic | 25.0% |
| ! | AAAATGTGAACTGATAGAAA+AGG | + | chr4.4:3758998-3759017 | MS.gene20149:intron | 25.0% |
| ! | AAAGTTTCTTCATAGTTGAT+TGG | + | chr4.4:3758880-3758899 | MS.gene20149:intron | 25.0% |
| ! | AACACTATAAAAATGCCTTT+GGG | - | chr4.4:3759886-3759905 | None:intergenic | 25.0% |
| ! | AAGGGAAAAATATCCATTTA+AGG | - | chr4.4:3759992-3760011 | None:intergenic | 25.0% |
| ! | AGGGAAAAATATCCATTTAA+GGG | - | chr4.4:3759991-3760010 | None:intergenic | 25.0% |
| ! | AGTAGTATCCTTATAACTAT+AGG | - | chr4.4:3758312-3758331 | None:intergenic | 25.0% |
| ! | CAATTAAGCCTATAGTTATA+AGG | + | chr4.4:3758301-3758320 | MS.gene20149:intron | 25.0% |
| ! | CATTAAATCGCTAAAAAGAA+AGG | + | chr4.4:3759470-3759489 | MS.gene20149:intron | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+CGG | + | chr4.4:3759778-3759797 | MS.gene20149:intron | 25.0% |
| ! | TACGTTAATATACAAAATGG+TGG | - | chr4.4:3759516-3759535 | None:intergenic | 25.0% |
| ! | TAGATTACTAGAATGAAAGT+GGG | + | chr4.4:3759027-3759046 | MS.gene20149:intron | 25.0% |
| ! | TTTAAAGAATATAAGTGGGA+CGG | + | chr4.4:3758562-3758581 | MS.gene20149:intron | 25.0% |
| !! | CTTTAGAAATCCATTATTAG+TGG | + | chr4.4:3759177-3759196 | MS.gene20149:intron | 25.0% |
| !! | TCAGTTCACATTTTATAAAG+TGG | - | chr4.4:3758992-3759011 | None:intergenic | 25.0% |
| !! | TCTTTCTTATCTTTAGGTTA+CGG | + | chr4.4:3760981-3761000 | MS.gene20149:intron | 25.0% |
| !! | TTCTATAGATAAGTTTTACC+TGG | + | chr4.4:3759110-3759129 | MS.gene20149:intron | 25.0% |
| !! | TTGTCTTTTATATCTTATGC+TGG | + | chr4.4:3760552-3760571 | MS.gene20149:intron | 25.0% |
| !!! | AATAATGGATTTCTAAAGAG+GGG | - | chr4.4:3759175-3759194 | None:intergenic | 25.0% |
| !!! | ATTTTTAGCATAAAATGTCC+AGG | - | chr4.4:3759131-3759150 | None:intergenic | 25.0% |
| !!! | CTAATAATGGATTTCTAAAG+AGG | - | chr4.4:3759177-3759196 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTTAGCGATTTAA+TGG | - | chr4.4:3759472-3759491 | None:intergenic | 25.0% |
| !!! | GAATCTTTTTAGCGATTTAA+TGG | - | chr4.4:3759436-3759455 | None:intergenic | 25.0% |
| !!! | TATATATACTTGGTGTGTTA+AGG | + | chr4.4:3760850-3760869 | MS.gene20149:intron | 25.0% |
| !!! | TTCTAAAGTTGATAGAGTAT+TGG | - | chr4.4:3758080-3758099 | None:intergenic | 25.0% |
| !!! | TTGTATTTAGTTTCTAGCAA+TGG | + | chr4.4:3758352-3758371 | MS.gene20149:intron | 25.0% |
| !!! | TTTTTATTTTCACTCTGCTA+TGG | + | chr4.4:3761176-3761195 | MS.gene20149:intron | 25.0% |
| AAGTGTAGAATAGAATGATC+AGG | - | chr4.4:3759082-3759101 | None:intergenic | 30.0% | |
| ACTTATTTGAGTCTATCTAC+TGG | - | chr4.4:3758716-3758735 | None:intergenic | 30.0% | |
| ATTGATAAGCAACGTTATTG+TGG | + | chr4.4:3758251-3758270 | MS.gene20149:intron | 30.0% | |
| CTAGATTACTAGAATGAAAG+TGG | + | chr4.4:3759026-3759045 | MS.gene20149:intron | 30.0% | |
| CTATAGGCTTAATTGAGATA+TGG | - | chr4.4:3758296-3758315 | None:intergenic | 30.0% | |
| GAACACTATAAAAATGCCTT+TGG | - | chr4.4:3759887-3759906 | None:intergenic | 30.0% | |
| TAACGCTCTTTCTTATCTTT+AGG | + | chr4.4:3760975-3760994 | MS.gene20149:intron | 30.0% | |
| TACAAAAAAAATCTGCCCAA+AGG | + | chr4.4:3759868-3759887 | MS.gene20149:intron | 30.0% | |
| TACAATGTTTGAAAAGGAAG+AGG | + | chr4.4:3759275-3759294 | MS.gene20149:CDS | 30.0% | |
| TCGCTAAAAAGATTCAAAAC+TGG | + | chr4.4:3759441-3759460 | MS.gene20149:intron | 30.0% | |
| TGAATTTCTATCTATTGCAG+CGG | + | chr4.4:3759249-3759268 | MS.gene20149:intron | 30.0% | |
| TTAAAGAATATAAGTGGGAC+GGG | + | chr4.4:3758563-3758582 | MS.gene20149:intron | 30.0% | |
| ! | ATTTGACAATTTTCTCCTGA+TGG | + | chr4.4:3759930-3759949 | MS.gene20149:intron | 30.0% |
| ! | TCCATGTTTTCAAAGCTTTT+TGG | + | chr4.4:3758031-3758050 | MS.gene20149:CDS | 30.0% |
| ! | TTCTTCATAGTTGATTGGTT+TGG | + | chr4.4:3758885-3758904 | MS.gene20149:intron | 30.0% |
| ! | TTTTGTAGAAAATTGACAGG+TGG | - | chr4.4:3759855-3759874 | None:intergenic | 30.0% |
| !! | AAGATTTTTGTGGTAGTGTT+TGG | - | chr4.4:3758692-3758711 | None:intergenic | 30.0% |
| !! | ACCAAAAAGCTTTGAAAACA+TGG | - | chr4.4:3758035-3758054 | None:intergenic | 30.0% |
| !! | AGATTTTTGTGGTAGTGTTT+GGG | - | chr4.4:3758691-3758710 | None:intergenic | 30.0% |
| !! | CTACTTTTCTTGCAAAACTT+AGG | + | chr4.4:3759906-3759925 | MS.gene20149:intron | 30.0% |
| !! | CTTTTTAGCGATTTAATGGT+TGG | - | chr4.4:3759432-3759451 | None:intergenic | 30.0% |
| !! | GAAAGAGCGTTAAACAAAAA+AGG | - | chr4.4:3760967-3760986 | None:intergenic | 30.0% |
| !! | GCTTTTTGGTAAAACTAAAC+AGG | + | chr4.4:3758045-3758064 | MS.gene20149:CDS | 30.0% |
| !!! | AAAAAAGTATCCATGGGTTT+TGG | - | chr4.4:3758545-3758564 | None:intergenic | 30.0% |
| AAATCCATTATTAGTGGAGC+AGG | + | chr4.4:3759183-3759202 | MS.gene20149:intron | 35.0% | |
| ACAAGAGCCAAGAATAAAAG+GGG | + | chr4.4:3758513-3758532 | MS.gene20149:CDS | 35.0% | |
| ACATGGACATTTCCCTTAAA+TGG | + | chr4.4:3759976-3759995 | MS.gene20149:intron | 35.0% | |
| ACTTGGAATGCTAGAGAAAA+AGG | + | chr4.4:3758437-3758456 | MS.gene20149:CDS | 35.0% | |
| AGCAATGGTTTACAGTTTGA+GGG | + | chr4.4:3758367-3758386 | MS.gene20149:intron | 35.0% | |
| ATATAGAATGAGAGCAGAAG+GGG | + | chr4.4:3760221-3760240 | MS.gene20149:intron | 35.0% | |
| ATGACCTATAGAAGCAGTTA+AGG | + | chr4.4:3758920-3758939 | MS.gene20149:intron | 35.0% | |
| CAAAATAAGCTCCATCCAAA+CGG | - | chr4.4:3759549-3759568 | None:intergenic | 35.0% | |
| CACAAGAGCCAAGAATAAAA+GGG | + | chr4.4:3758512-3758531 | MS.gene20149:CDS | 35.0% | |
| CATATAGAATGAGAGCAGAA+GGG | + | chr4.4:3760220-3760239 | MS.gene20149:intron | 35.0% | |
| CATTGCTCAAATGATTGAAC+TGG | - | chr4.4:3760361-3760380 | None:intergenic | 35.0% | |
| CCTTCATTGAAGAGAAACTT+GGG | + | chr4.4:3758832-3758851 | MS.gene20149:intron | 35.0% | |
| GACTTGCACTTGTGTTAATT+TGG | + | chr4.4:3758772-3758791 | MS.gene20149:intron | 35.0% | |
| GCTTGAATTATGTAGACACT+TGG | + | chr4.4:3758420-3758439 | MS.gene20149:intron | 35.0% | |
| TAACACAAGTGCAAGTCATA+AGG | - | chr4.4:3758769-3758788 | None:intergenic | 35.0% | |
| TAGAAAATTGACAGGTGGTT+GGG | - | chr4.4:3759850-3759869 | None:intergenic | 35.0% | |
| TAGCAATGGTTTACAGTTTG+AGG | + | chr4.4:3758366-3758385 | MS.gene20149:intron | 35.0% | |
| TCACAAGAGCCAAGAATAAA+AGG | + | chr4.4:3758511-3758530 | MS.gene20149:CDS | 35.0% | |
| TCATATAGAATGAGAGCAGA+AGG | + | chr4.4:3760219-3760238 | MS.gene20149:intron | 35.0% | |
| TGAGAACATGAAACAGATTC+AGG | + | chr4.4:3761092-3761111 | MS.gene20149:CDS | 35.0% | |
| TGCGATTTCATGCAAAAACA+TGG | + | chr4.4:3759959-3759978 | MS.gene20149:intron | 35.0% | |
| TGTATTGTATGCGAGTCTAT+GGG | - | chr4.4:3759805-3759824 | None:intergenic | 35.0% | |
| TTAAGAACTGATCCTCCAAT+CGG | - | chr4.4:3760465-3760484 | None:intergenic | 35.0% | |
| TTATCAGAACAAGACTGAAC+TGG | - | chr4.4:3760507-3760526 | None:intergenic | 35.0% | |
| TTATGAATATAGGCTCCGTT+TGG | + | chr4.4:3759572-3759591 | MS.gene20149:intron | 35.0% | |
| ! | AAACTTTACCCTCTTTTCCA+CGG | - | chr4.4:3758867-3758886 | None:intergenic | 35.0% |
| ! | AGTGCAAAAAATGGAAGTAC+TGG | - | chr4.4:3760421-3760440 | None:intergenic | 35.0% |
| ! | ATCTACTGGCAAGATTTTTG+TGG | - | chr4.4:3758702-3758721 | None:intergenic | 35.0% |
| ! | TCTGAATTTGTTTGCCATTC+AGG | + | chr4.4:3761270-3761289 | MS.gene20149:intron | 35.0% |
| ! | TGTGTTACAGATGATAATGC+TGG | + | chr4.4:3760580-3760599 | MS.gene20149:intron | 35.0% |
| ! | TTACAGATGATAATGCTGGA+AGG | + | chr4.4:3760584-3760603 | MS.gene20149:intron | 35.0% |
| !! | TGAACTATGACTTGTTCATG+CGG | + | chr4.4:3760379-3760398 | MS.gene20149:intron | 35.0% |
| !! | TTATAAAGTGGTGTCGTAGT+AGG | - | chr4.4:3758980-3758999 | None:intergenic | 35.0% |
| ACAAGTGCAAGTCATAAGGA+GGG | - | chr4.4:3758765-3758784 | None:intergenic | 40.0% | |
| AGTTTCTCTTCAATGAAGGC+TGG | - | chr4.4:3758831-3758850 | None:intergenic | 40.0% | |
| CATAAGGAGGGATACACTAT+GGG | - | chr4.4:3758753-3758772 | None:intergenic | 40.0% | |
| CCCAAGTTTCTCTTCAATGA+AGG | - | chr4.4:3758835-3758854 | None:intergenic | 40.0% | |
| CCTATAGAAGCAGTTAAGGA+CGG | + | chr4.4:3758924-3758943 | MS.gene20149:intron | 40.0% | |
| CGGCGATACAATGTTTGAAA+AGG | + | chr4.4:3759269-3759288 | MS.gene20149:CDS | 40.0% | |
| CTGTTCGTTAATCTCATCCA+TGG | - | chr4.4:3761070-3761089 | None:intergenic | 40.0% | |
| GAAATCGCATAAAAGCCATC+AGG | - | chr4.4:3759948-3759967 | None:intergenic | 40.0% | |
| GAATTATTGTCCGCTCCAAT+TGG | + | chr4.4:3761114-3761133 | MS.gene20149:CDS | 40.0% | |
| GCCTTCATTGAAGAGAAACT+TGG | + | chr4.4:3758831-3758850 | MS.gene20149:intron | 40.0% | |
| GTAGAAAATTGACAGGTGGT+TGG | - | chr4.4:3759851-3759870 | None:intergenic | 40.0% | |
| GTGTATTGTATGCGAGTCTA+TGG | - | chr4.4:3759806-3759825 | None:intergenic | 40.0% | |
| TAATGATGTTGATGCGACCA+TGG | + | chr4.4:3761050-3761069 | MS.gene20149:CDS | 40.0% | |
| TCATAAGGAGGGATACACTA+TGG | - | chr4.4:3758754-3758773 | None:intergenic | 40.0% | |
| TGAACCTGCTCCACTAATAA+TGG | - | chr4.4:3759190-3759209 | None:intergenic | 40.0% | |
| ! | GTACGTACCCCTTTTATTCT+TGG | - | chr4.4:3758523-3758542 | None:intergenic | 40.0% |
| ! | TAAGGCTTGGTTGTTGTTGT+TGG | + | chr4.4:3760868-3760887 | MS.gene20149:intron | 40.0% |
| ! | TGCTTCAAGTTCATCCTGAA+TGG | - | chr4.4:3761287-3761306 | None:intergenic | 40.0% |
| !! | ATACTTGGTGTGTTAAGGCT+TGG | + | chr4.4:3760855-3760874 | MS.gene20149:intron | 40.0% |
| !! | GAACTATGACTTGTTCATGC+GGG | + | chr4.4:3760380-3760399 | MS.gene20149:intron | 40.0% |
| AAAGCTGCCAATTCTTCCTC+AGG | - | chr4.4:3761436-3761455 | None:intergenic | 45.0% | |
| AAATCAGCAGCTGCACCAAT+TGG | - | chr4.4:3761132-3761151 | None:intergenic | 45.0% | |
| ACGTAGATATAGGCTCCGTT+TGG | + | chr4.4:3759531-3759550 | MS.gene20149:intron | 45.0% | |
| AGAATGAAAGTGGGAGTGAC+TGG | + | chr4.4:3759036-3759055 | MS.gene20149:intron | 45.0% | |
| AGATATAGGCTCCGTTTGGA+TGG | + | chr4.4:3759535-3759554 | MS.gene20149:intron | 45.0% | |
| AGCAGAACTTGAAGAGCTAG+AGG | + | chr4.4:3761303-3761322 | MS.gene20149:CDS | 45.0% | |
| CACAAGTGCAAGTCATAAGG+AGG | - | chr4.4:3758766-3758785 | None:intergenic | 45.0% | |
| CAGGTAGTTCGGTAGGTTTA+GGG | + | chr4.4:3758952-3758971 | MS.gene20149:intron | 45.0% | |
| CCAGTTGCGTATTCATGATC+AGG | + | chr4.4:3759333-3759352 | MS.gene20149:CDS | 45.0% | |
| CCGTCCTTAACTGCTTCTAT+AGG | - | chr4.4:3758927-3758946 | None:intergenic | 45.0% | |
| CCTGATCATGAATACGCAAC+TGG | - | chr4.4:3759336-3759355 | None:intergenic | 45.0% | |
| GAATATAGGCTCCGTTTGGA+TGG | + | chr4.4:3759576-3759595 | MS.gene20149:intron | 45.0% | |
| GAATGAAAGTGGGAGTGACT+GGG | + | chr4.4:3759037-3759056 | MS.gene20149:intron | 45.0% | |
| GATACACTATGGGCTCTGTT+TGG | - | chr4.4:3758743-3758762 | None:intergenic | 45.0% | |
| GCAGAACTTGAAGAGCTAGA+GGG | + | chr4.4:3761304-3761323 | MS.gene20149:CDS | 45.0% | |
| TCAGGTAGTTCGGTAGGTTT+AGG | + | chr4.4:3758951-3758970 | MS.gene20149:intron | 45.0% | |
| ! | GGAGAGCGTGCTTCTTAAAA+AGG | + | chr4.4:3758458-3758477 | MS.gene20149:CDS | 45.0% |
| ! | TTTACCCTCTTTTCCACGGT+TGG | - | chr4.4:3758863-3758882 | None:intergenic | 45.0% |
| ! | TTTCCCTTGAGCTTTTGCGT+TGG | + | chr4.4:3760004-3760023 | MS.gene20149:intron | 45.0% |
| !! | GCTTCTGGAGTTGTAATTGC+AGG | - | chr4.4:3761358-3761377 | None:intergenic | 45.0% |
| !! | TACTGTTTCTGTGGTTGCCT+TGG | - | chr4.4:3760612-3760631 | None:intergenic | 45.0% |
| !! | TTAGGGTTGAGTTGACCGAT+TGG | + | chr4.4:3760447-3760466 | MS.gene20149:intron | 45.0% |
| !! | TATATATATATATATATACT+TGG | + | chr4.4:3760840-3760859 | MS.gene20149:intron | 5.0% |
| ACAGTAGCCGCATTGAGAAC+TGG | + | chr4.4:3760626-3760645 | MS.gene20149:CDS | 50.0% | |
| AGCACCAACCGTGGAAAAGA+GGG | + | chr4.4:3758856-3758875 | MS.gene20149:intron | 50.0% | |
| AGCACCAACGCAAAAGCTCA+AGG | - | chr4.4:3760011-3760030 | None:intergenic | 50.0% | |
| AGGCTGCAGCTGAAGTTGAA+AGG | + | chr4.4:3758478-3758497 | MS.gene20149:CDS | 50.0% | |
| GAACAGCAAGTAGAGCAGCT+TGG | + | chr4.4:3759304-3759323 | MS.gene20149:CDS | 50.0% | |
| GCACCAACGCAAAAGCTCAA+GGG | - | chr4.4:3760010-3760029 | None:intergenic | 50.0% | |
| GCCAATTCTTCCTCAGGAGT+GGG | - | chr4.4:3761430-3761449 | None:intergenic | 50.0% | |
| GGCTGCAGCTGAAGTTGAAA+GGG | + | chr4.4:3758479-3758498 | MS.gene20149:CDS | 50.0% | |
| TAGCACCAACCGTGGAAAAG+AGG | + | chr4.4:3758855-3758874 | MS.gene20149:intron | 50.0% | |
| TGCCAATTCTTCCTCAGGAG+TGG | - | chr4.4:3761431-3761450 | None:intergenic | 50.0% | |
| TTTGTATGCACCGGACGAGT+AGG | - | chr4.4:3761406-3761425 | None:intergenic | 50.0% | |
| ! | ACTTGTTCATGCGGGTTGAC+TGG | + | chr4.4:3760388-3760407 | MS.gene20149:intron | 50.0% |
| !! | CAATGCGGCTACTGTTTCTG+TGG | - | chr4.4:3760621-3760640 | None:intergenic | 50.0% |
| !! | GATAATGCTGGAAGGTGCCA+AGG | + | chr4.4:3760592-3760611 | MS.gene20149:CDS | 50.0% |
| !!! | TGCAGCTGCTGATTTTGACG+AGG | + | chr4.4:3761137-3761156 | MS.gene20149:CDS | 50.0% |
| AACTTGGGTAGCACCAACCG+TGG | + | chr4.4:3758847-3758866 | MS.gene20149:intron | 55.0% | |
| AGCAGCTGCACCAATTGGAG+CGG | - | chr4.4:3761127-3761146 | None:intergenic | 55.0% | |
| AGCCGCATTGAGAACTGGAG+CGG | + | chr4.4:3760631-3760650 | MS.gene20149:CDS | 55.0% | |
| AGCCGCTCCAGTTCTCAATG+CGG | - | chr4.4:3760636-3760655 | None:intergenic | 55.0% | |
| AGGTGGTTGGGCTTCTGATC+GGG | - | chr4.4:3759838-3759857 | None:intergenic | 55.0% | |
| CAGGTGGTTGGGCTTCTGAT+CGG | - | chr4.4:3759839-3759858 | None:intergenic | 55.0% | |
| GCAGTTAAGGACGGCAGATC+AGG | + | chr4.4:3758933-3758952 | MS.gene20149:intron | 55.0% | |
| GCATACAAAGCCCACTCCTG+AGG | + | chr4.4:3761417-3761436 | MS.gene20149:CDS | 55.0% | |
| GCCCACTCCTGAGGAAGAAT+TGG | + | chr4.4:3761426-3761445 | MS.gene20149:CDS | 55.0% | |
| GGACGGCAGATCAGGTAGTT+CGG | + | chr4.4:3758941-3758960 | MS.gene20149:intron | 55.0% | |
| GGCAGATCAGGTAGTTCGGT+AGG | + | chr4.4:3758945-3758964 | MS.gene20149:intron | 55.0% | |
| GGCAGCTTTGCAAGCTGAGA+TGG | + | chr4.4:3761447-3761466 | MS.gene20149:CDS | 55.0% | |
| GGGGTACGTACCAAAACCCA+TGG | + | chr4.4:3758532-3758551 | MS.gene20149:intron | 55.0% | |
| TGAGAGCAGAAGGGGAAGAC+AGG | + | chr4.4:3760229-3760248 | MS.gene20149:intron | 55.0% | |
| TGCGAGTCTATGGGTCCGTT+TGG | - | chr4.4:3759796-3759815 | None:intergenic | 55.0% | |
| ! | GGAGTGGGCTTTGTATGCAC+CGG | - | chr4.4:3761415-3761434 | None:intergenic | 55.0% |
| !! | AGAGCTAGAGGGTGCTGAGT+TGG | + | chr4.4:3761315-3761334 | MS.gene20149:CDS | 55.0% |
| !! | GGGTTGAGTTGACCGATTGG+AGG | + | chr4.4:3760450-3760469 | MS.gene20149:intron | 55.0% |
| CCTAGCTGGGACATGCACAG+AGG | - | chr4.4:3761380-3761399 | None:intergenic | 60.0% | |
| CCTCTGTGCATGTCCCAGCT+AGG | + | chr4.4:3761377-3761396 | MS.gene20149:CDS | 60.0% | |
| CTGTGCATGTCCCAGCTAGG+CGG | + | chr4.4:3761380-3761399 | MS.gene20149:CDS | 60.0% | |
| GGGACATGCACAGAGGCTTC+TGG | - | chr4.4:3761373-3761392 | None:intergenic | 60.0% | |
| AGCTAGGCGGCCTACTCGTC+CGG | + | chr4.4:3761393-3761412 | MS.gene20149:CDS | 65.0% | |
| GACGAGTAGGCCGCCTAGCT+GGG | - | chr4.4:3761393-3761412 | None:intergenic | 65.0% | |
| GGACGAGTAGGCCGCCTAGC+TGG | - | chr4.4:3761394-3761413 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3758022 | 3761477 | 3758022 | ID=MS.gene20149 |
| chr4.4 | mRNA | 3758022 | 3761477 | 3758022 | ID=MS.gene20149.t1;Parent=MS.gene20149 |
| chr4.4 | exon | 3758022 | 3758111 | 3758022 | ID=MS.gene20149.t1.exon1;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3758022 | 3758111 | 3758022 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| chr4.4 | exon | 3758435 | 3758534 | 3758435 | ID=MS.gene20149.t1.exon2;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3758435 | 3758534 | 3758435 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| chr4.4 | exon | 3759269 | 3759354 | 3759269 | ID=MS.gene20149.t1.exon3;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3759269 | 3759354 | 3759269 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| chr4.4 | exon | 3760590 | 3760681 | 3760590 | ID=MS.gene20149.t1.exon4;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3760590 | 3760681 | 3760590 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| chr4.4 | exon | 3761044 | 3761158 | 3761044 | ID=MS.gene20149.t1.exon5;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3761044 | 3761158 | 3761044 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| chr4.4 | exon | 3761292 | 3761477 | 3761292 | ID=MS.gene20149.t1.exon6;Parent=MS.gene20149.t1 |
| chr4.4 | CDS | 3761292 | 3761477 | 3761292 | ID=cds.MS.gene20149.t1;Parent=MS.gene20149.t1 |
| Gene Sequence |
| Protein sequence |
