Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20657.t1 | KEH19858.1 | 67.2 | 387 | 74 | 2 | 1 | 340 | 1 | 381 | 2.10E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20657.t1 | A0A072TSR4 | 67.2 | 387 | 74 | 2 | 1 | 340 | 1 | 381 | 1.5e-122 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene20657 | 0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene049541 | MS.gene20657 | 0.802175 | 6.36E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene20657 | 0.864151 | 1.49E-64 | -1.69E-46 |
| MS.gene051575 | MS.gene20657 | 0.82387 | 1.10E-53 | -1.69E-46 |
| MS.gene052447 | MS.gene20657 | 0.837818 | 4.15E-57 | -1.69E-46 |
| MS.gene054174 | MS.gene20657 | 0.833122 | 6.39E-56 | -1.69E-46 |
| MS.gene054175 | MS.gene20657 | 0.83793 | 3.89E-57 | -1.69E-46 |
| MS.gene054484 | MS.gene20657 | 0.839048 | 2.00E-57 | -1.69E-46 |
| MS.gene055017 | MS.gene20657 | 0.800409 | 1.46E-48 | -1.69E-46 |
| MS.gene055056 | MS.gene20657 | 0.818585 | 1.81E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene20657 | 0.858221 | 9.56E-63 | -1.69E-46 |
| MS.gene055952 | MS.gene20657 | 0.851115 | 1.10E-60 | -1.69E-46 |
| MS.gene058515 | MS.gene20657 | 0.808569 | 2.90E-50 | -1.69E-46 |
| MS.gene058580 | MS.gene20657 | 0.827338 | 1.65E-54 | -1.69E-46 |
| MS.gene059276 | MS.gene20657 | 0.86306 | 3.26E-64 | -1.69E-46 |
| MS.gene059458 | MS.gene20657 | 0.820442 | 6.84E-53 | -1.69E-46 |
| MS.gene059460 | MS.gene20657 | 0.803812 | 2.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20657.t1 | MTR_8g469580 | 66.150 | 387 | 78 | 2 | 1 | 340 | 1 | 381 | 2.29e-171 | 487 |
| MS.gene20657.t1 | MTR_1g044605 | 34.264 | 394 | 190 | 9 | 19 | 358 | 6 | 384 | 4.73e-65 | 213 |
| MS.gene20657.t1 | MTR_6g463930 | 35.751 | 386 | 201 | 10 | 1 | 357 | 1 | 368 | 3.90e-63 | 209 |
| MS.gene20657.t1 | MTR_8g056180 | 33.956 | 321 | 153 | 8 | 99 | 365 | 1 | 316 | 1.87e-48 | 167 |
| MS.gene20657.t1 | MTR_1g052090 | 31.894 | 301 | 190 | 6 | 47 | 343 | 26 | 315 | 2.40e-42 | 152 |
| MS.gene20657.t1 | MTR_6g088860 | 41.436 | 181 | 96 | 6 | 99 | 274 | 1 | 176 | 6.57e-32 | 121 |
| MS.gene20657.t1 | MTR_6g466450 | 41.436 | 181 | 96 | 6 | 99 | 274 | 1 | 176 | 6.57e-32 | 121 |
| MS.gene20657.t1 | MTR_0126s0010 | 30.216 | 278 | 134 | 8 | 140 | 366 | 19 | 287 | 1.24e-28 | 114 |
| MS.gene20657.t1 | MTR_3g080720 | 27.500 | 360 | 213 | 9 | 49 | 364 | 45 | 400 | 2.06e-28 | 115 |
| MS.gene20657.t1 | MTR_0084s0060 | 29.052 | 327 | 154 | 9 | 49 | 364 | 45 | 304 | 5.59e-28 | 112 |
| MS.gene20657.t1 | MTR_7g070630 | 33.624 | 229 | 125 | 7 | 49 | 275 | 45 | 248 | 2.33e-27 | 112 |
| MS.gene20657.t1 | MTR_7g070630 | 43.678 | 87 | 48 | 1 | 279 | 364 | 323 | 409 | 4.03e-14 | 73.9 |
| MS.gene20657.t1 | MTR_3g455890 | 34.061 | 229 | 117 | 6 | 49 | 275 | 45 | 241 | 9.62e-27 | 111 |
| MS.gene20657.t1 | MTR_3g455890 | 43.678 | 87 | 48 | 1 | 279 | 364 | 316 | 402 | 6.81e-15 | 76.3 |
| MS.gene20657.t1 | MTR_7g105490 | 32.766 | 235 | 117 | 7 | 165 | 361 | 24 | 255 | 1.05e-26 | 108 |
| MS.gene20657.t1 | MTR_5g079810 | 35.196 | 179 | 105 | 6 | 99 | 275 | 1 | 170 | 9.87e-23 | 98.2 |
| MS.gene20657.t1 | MTR_5g039510 | 31.553 | 206 | 128 | 7 | 75 | 273 | 21 | 220 | 1.02e-20 | 94.0 |
| MS.gene20657.t1 | MTR_6g065960 | 29.197 | 274 | 152 | 9 | 119 | 389 | 66 | 300 | 2.18e-20 | 91.3 |
| MS.gene20657.t1 | MTR_5g095330 | 29.644 | 253 | 149 | 11 | 56 | 290 | 32 | 273 | 2.27e-20 | 90.5 |
| MS.gene20657.t1 | MTR_5g095430 | 27.801 | 241 | 154 | 9 | 50 | 280 | 281 | 511 | 1.59e-18 | 87.8 |
| MS.gene20657.t1 | MTR_5g095400 | 26.360 | 239 | 160 | 8 | 50 | 280 | 290 | 520 | 5.64e-16 | 80.1 |
| MS.gene20657.t1 | MTR_5g095270 | 28.667 | 150 | 98 | 4 | 124 | 270 | 34 | 177 | 1.67e-12 | 65.9 |
| MS.gene20657.t1 | MTR_5g095310 | 30.573 | 157 | 93 | 5 | 108 | 254 | 198 | 348 | 2.52e-12 | 68.2 |
| MS.gene20657.t1 | MTR_6g033460 | 25.084 | 299 | 191 | 9 | 14 | 290 | 4 | 291 | 5.40e-12 | 67.4 |
| MS.gene20657.t1 | MTR_6g023550 | 26.531 | 196 | 127 | 6 | 65 | 258 | 138 | 318 | 6.87e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGGAAGACTACGATTT+TGG | 0.212526 | 6.3:-3668514 | MS.gene20657:CDS |
| TGGTTGGGTGGTAGAGTGTT+AGG | 0.242662 | 6.3:+3669663 | None:intergenic |
| CCAGGAGATTAACCGTGTTT+TGG | 0.249114 | 6.3:-3669331 | MS.gene20657:CDS |
| ATATTTATACTTCGGCAAAT+TGG | 0.292959 | 6.3:-3668717 | MS.gene20657:CDS |
| TCCTTTGAGGGTTGTTCGTT+GGG | 0.294700 | 6.3:+3669178 | None:intergenic |
| TTCGGTGTTGTCGGAAGTTC+GGG | 0.295777 | 6.3:+3669737 | None:intergenic |
| TAACATGCAAAATTACTTTC+AGG | 0.304161 | 6.3:-3668572 | MS.gene20657:CDS |
| GGAAAGGTTCAAGATTATTC+AGG | 0.308334 | 6.3:-3669574 | MS.gene20657:CDS |
| CTTCGGTGTTGTCGGAAGTT+CGG | 0.323266 | 6.3:+3669736 | None:intergenic |
| TGCCGAAGTATAAATATATT+CGG | 0.332108 | 6.3:+3668723 | None:intergenic |
| GAAGTTATGTGTCAAGGGTT+AGG | 0.335918 | 6.3:-3669377 | MS.gene20657:CDS |
| GTTCAGAAAACAACACTAAT+AGG | 0.342378 | 6.3:+3669046 | None:intergenic |
| GGAGAAGGCTGTCGGGAAAC+TGG | 0.366291 | 6.3:-3669275 | MS.gene20657:CDS |
| GGTTGGTCTGCGGGTTGGTT+GGG | 0.368283 | 6.3:+3669648 | None:intergenic |
| AATCATGTCATTAATATTGT+AGG | 0.380882 | 6.3:+3668993 | None:intergenic |
| GTGGTTGATTTGGTGGTGGT+TGG | 0.384408 | 6.3:+3669631 | None:intergenic |
| GACGCCCAGGCTCTTGGTAT+TGG | 0.390949 | 6.3:+3669135 | None:intergenic |
| TTCCCTCAGGATGGACATCC+AGG | 0.395798 | 6.3:-3668436 | MS.gene20657:CDS |
| TTGTATGGTTGTGGTTGATT+TGG | 0.399885 | 6.3:+3669621 | None:intergenic |
| AAGTTATGTGTCAAGGGTTA+GGG | 0.400319 | 6.3:-3669376 | MS.gene20657:CDS |
| CTCCCAGCCTTTCTCTCTCA+AGG | 0.404624 | 6.3:+3669482 | None:intergenic |
| ATCCTTTGAGGGTTGTTCGT+TGG | 0.406270 | 6.3:+3669177 | None:intergenic |
| TTGATGATGAAGCTCTTGTT+TGG | 0.409315 | 6.3:+3669688 | None:intergenic |
| TTTGGTGGTGGTTGGTCTGC+GGG | 0.410723 | 6.3:+3669639 | None:intergenic |
| CCGTTGGTGAATCTCTTGTA+TGG | 0.412896 | 6.3:+3669606 | None:intergenic |
| TGGTTGGTCTGCGGGTTGGT+TGG | 0.418293 | 6.3:+3669647 | None:intergenic |
| CCTTTCCTCTGCTTCTCCGT+TGG | 0.418843 | 6.3:+3669590 | None:intergenic |
| TGCTTCCAATACCAAGAGCC+TGG | 0.429305 | 6.3:-3669140 | MS.gene20657:CDS |
| GTGAATCTCTTGTATGGTTG+TGG | 0.429670 | 6.3:+3669612 | None:intergenic |
| TATGGTTGTGGTTGATTTGG+TGG | 0.430671 | 6.3:+3669624 | None:intergenic |
| TGTCAAGGGTTAGGGGTAAG+AGG | 0.445020 | 6.3:-3669368 | MS.gene20657:CDS |
| GAACCTTGAGAGAGAAAGGC+TGG | 0.446070 | 6.3:-3669485 | MS.gene20657:CDS |
| GACAGAACCTTGAGAGAGAA+AGG | 0.451941 | 6.3:-3669489 | MS.gene20657:CDS |
| TCCTCCTATGCATCCGGCAT+TGG | 0.459915 | 6.3:-3668746 | MS.gene20657:CDS |
| CCAAAACACGGTTAATCTCC+TGG | 0.469934 | 6.3:+3669331 | None:intergenic |
| CACCCGCATTCTCACACAAC+AGG | 0.470511 | 6.3:+3668932 | None:intergenic |
| TCTGCATGTTAGCGAACTGC+TGG | 0.471154 | 6.3:+3668647 | None:intergenic |
| AAGAAGGAAAGGGGTGGAAA+AGG | 0.472671 | 6.3:-3669206 | MS.gene20657:CDS |
| GGCCGAATATATTTATACTT+CGG | 0.472704 | 6.3:-3668725 | MS.gene20657:CDS |
| GATCACTCATCATGCTGTCC+TGG | 0.473431 | 6.3:+3668418 | None:intergenic |
| ATGAACGACGCCCAGGCTCT+TGG | 0.479576 | 6.3:+3669129 | None:intergenic |
| ATTCAGGAATTAGAATTCAC+TGG | 0.486127 | 6.3:-3669558 | MS.gene20657:CDS |
| GGTTGTGGTTGATTTGGTGG+TGG | 0.487879 | 6.3:+3669627 | None:intergenic |
| GCCTCGTGGTCAAGAGGCGT+GGG | 0.488740 | 6.3:-3669253 | MS.gene20657:CDS |
| GTTGAGAGGAGAAGGCTGTC+GGG | 0.491715 | 6.3:-3669282 | MS.gene20657:CDS |
| AAAATTACTTTCAGGCGACC+AGG | 0.492876 | 6.3:-3668564 | MS.gene20657:CDS |
| ACAGTCAGATTTCTTCCCTC+AGG | 0.495538 | 6.3:-3668449 | MS.gene20657:CDS |
| GTGGTGGTTGGTCTGCGGGT+TGG | 0.496189 | 6.3:+3669643 | None:intergenic |
| GAACAGGAGCAGATGGATGT+AGG | 0.498747 | 6.3:-3669027 | MS.gene20657:CDS |
| CTCGTAGGGTTGATGAAAGA+AGG | 0.504021 | 6.3:-3669222 | MS.gene20657:CDS |
| TGGTTGTACTTCGGTGTTGT+CGG | 0.504099 | 6.3:+3669728 | None:intergenic |
| GGATAAAATGAACGACGCCC+AGG | 0.506562 | 6.3:+3669122 | None:intergenic |
| TAAATATATTCGGCCAATGC+CGG | 0.507222 | 6.3:+3668733 | None:intergenic |
| TCGGCCAATGCCGGATGCAT+AGG | 0.509365 | 6.3:+3668742 | None:intergenic |
| CAGTGGTGTCAATCCTTTGA+GGG | 0.512329 | 6.3:+3669166 | None:intergenic |
| GGCCTCGTGGTCAAGAGGCG+TGG | 0.513234 | 6.3:-3669254 | MS.gene20657:CDS |
| TGAATATCCTCCTATGCATC+CGG | 0.516569 | 6.3:-3668752 | MS.gene20657:CDS |
| TTATACTTCGGCAAATTGGA+TGG | 0.522440 | 6.3:-3668713 | MS.gene20657:CDS |
| GAGAGCTGAGCAGAGAGAGA+AGG | 0.529169 | 6.3:-3668539 | MS.gene20657:CDS |
| ATTTGGTGGTGGTTGGTCTG+CGG | 0.531793 | 6.3:+3669638 | None:intergenic |
| CAAAACACGGTTAATCTCCT+GGG | 0.533890 | 6.3:+3669332 | None:intergenic |
| AACAGGAGCAGATGGATGTA+GGG | 0.542493 | 6.3:-3669026 | MS.gene20657:CDS |
| GCCAATGCCGGATGCATAGG+AGG | 0.544891 | 6.3:+3668745 | None:intergenic |
| GATACAGTACAAGAGGAAGC+CGG | 0.548978 | 6.3:-3668626 | MS.gene20657:CDS |
| GCAGAGAGAGAAGGAGATTG+AGG | 0.552301 | 6.3:-3668530 | MS.gene20657:CDS |
| TCTCTGCTCAGCTCTCTCCC+TGG | 0.552387 | 6.3:+3668546 | None:intergenic |
| GAGCTGGAAGTTATGTGTCA+AGG | 0.552791 | 6.3:-3669383 | MS.gene20657:CDS |
| TCAGATTTCTTCCCTCAGGA+TGG | 0.555478 | 6.3:-3668445 | MS.gene20657:CDS |
| ACATCACAGACCGCCGGTAC+AGG | 0.555819 | 6.3:+3669303 | None:intergenic |
| GGGTTGATGAAAGAAGGAAA+GGG | 0.562533 | 6.3:-3669216 | MS.gene20657:CDS |
| ATACAGTACAAGAGGAAGCC+GGG | 0.566114 | 6.3:-3668625 | MS.gene20657:CDS |
| GCTTCCAATACCAAGAGCCT+GGG | 0.567341 | 6.3:-3669139 | MS.gene20657:CDS |
| AGCTGGAAGTTATGTGTCAA+GGG | 0.567435 | 6.3:-3669382 | MS.gene20657:CDS |
| CGTGGGATGAACTACTCGTA+GGG | 0.569451 | 6.3:-3669236 | MS.gene20657:CDS |
| TGTTGAGAGGAGAAGGCTGT+CGG | 0.569949 | 6.3:-3669283 | MS.gene20657:CDS |
| TGGTCTGCGGGTTGGTTGGG+TGG | 0.570591 | 6.3:+3669651 | None:intergenic |
| AATGCAGTCTGTGAGAGAGC+TGG | 0.572197 | 6.3:-3669399 | MS.gene20657:CDS |
| ACCCAACGAACAACCCTCAA+AGG | 0.572677 | 6.3:-3669179 | MS.gene20657:CDS |
| ACATGCAGATACAGTACAAG+AGG | 0.576744 | 6.3:-3668633 | MS.gene20657:CDS |
| ATTAGAATTCACTGGTGAGA+GGG | 0.579813 | 6.3:-3669550 | MS.gene20657:CDS |
| AGGGTTGATGAAAGAAGGAA+AGG | 0.584043 | 6.3:-3669217 | MS.gene20657:CDS |
| ATTCACCAACGGAGAAGCAG+AGG | 0.590418 | 6.3:-3669595 | MS.gene20657:CDS |
| CAACCTGTTGTGTGAGAATG+CGG | 0.590609 | 6.3:-3668935 | MS.gene20657:CDS |
| CGGCGGTCTGTGATGTTGAG+AGG | 0.591838 | 6.3:-3669296 | MS.gene20657:CDS |
| CTCTCAACATCACAGACCGC+CGG | 0.592617 | 6.3:+3669297 | None:intergenic |
| GTCCTGGATGTCCATCCTGA+GGG | 0.595786 | 6.3:+3668434 | None:intergenic |
| TGTGAGTACTTCTGCTGCTG+CGG | 0.597014 | 6.3:-3669094 | MS.gene20657:CDS |
| TCAGTGGTGTCAATCCTTTG+AGG | 0.598256 | 6.3:+3669165 | None:intergenic |
| AACCTTGAGAGAGAAAGGCT+GGG | 0.602920 | 6.3:-3669484 | MS.gene20657:CDS |
| GCGTTTGCGTGGTTGTACTT+CGG | 0.603280 | 6.3:+3669719 | None:intergenic |
| AAACTGGCCTCGTGGTCAAG+AGG | 0.607931 | 6.3:-3669259 | MS.gene20657:CDS |
| TCTGTGATGTTGAGAGGAGA+AGG | 0.613626 | 6.3:-3669290 | MS.gene20657:CDS |
| GCGTGGGATGAACTACTCGT+AGG | 0.615064 | 6.3:-3669237 | MS.gene20657:CDS |
| AAATTACTTTCAGGCGACCA+GGG | 0.615616 | 6.3:-3668563 | MS.gene20657:CDS |
| GGGAAGAAATCTGACTGTGA+TGG | 0.615637 | 6.3:+3668454 | None:intergenic |
| GAGCAACAAATCGATAGCAA+TGG | 0.619179 | 6.3:-3669433 | MS.gene20657:CDS |
| AATTAGAATTCACTGGTGAG+AGG | 0.619323 | 6.3:-3669551 | MS.gene20657:CDS |
| CTGGGAGAATTTGAATGCAA+TGG | 0.619750 | 6.3:-3669466 | MS.gene20657:CDS |
| CCAACGGAGAAGCAGAGGAA+AGG | 0.623334 | 6.3:-3669590 | MS.gene20657:CDS |
| CTGTCGGGAAACTGGCCTCG+TGG | 0.626954 | 6.3:-3669267 | MS.gene20657:CDS |
| CTGCATGTTAGCGAACTGCT+GGG | 0.629720 | 6.3:+3668648 | None:intergenic |
| AACCTGTTGTGTGAGAATGC+GGG | 0.630249 | 6.3:-3668934 | MS.gene20657:intron |
| TGGTTGCGTGTGCGTTTGCG+TGG | 0.630989 | 6.3:+3669708 | None:intergenic |
| TGATGAAAGAAGGAAAGGGG+TGG | 0.641815 | 6.3:-3669212 | MS.gene20657:CDS |
| GCGAACTGCTGGGAGAAACG+TGG | 0.648605 | 6.3:+3668658 | None:intergenic |
| TGTCCTGGATGTCCATCCTG+AGG | 0.654513 | 6.3:+3668433 | None:intergenic |
| GGTTGATGAAAGAAGGAAAG+GGG | 0.662914 | 6.3:-3669215 | MS.gene20657:CDS |
| AGCAGAAGTACTCACAATGG+TGG | 0.664478 | 6.3:+3669101 | None:intergenic |
| TTTGGGTTTACCTGTACCGG+CGG | 0.666169 | 6.3:-3669313 | MS.gene20657:CDS |
| AATCTCTCAAAAGAATAACC+CGG | 0.669209 | 6.3:+3668607 | None:intergenic |
| AGTTATGTGTCAAGGGTTAG+GGG | 0.675496 | 6.3:-3669375 | MS.gene20657:CDS |
| AACTGCTGGGAGAAACGTGG+AGG | 0.680530 | 6.3:+3668661 | None:intergenic |
| AAAACACGGTTAATCTCCTG+GGG | 0.683997 | 6.3:+3669333 | None:intergenic |
| TGGTATTGGAAGCAAATCAG+TGG | 0.684730 | 6.3:+3669149 | None:intergenic |
| AGCAGCAGAAGTACTCACAA+TGG | 0.686303 | 6.3:+3669098 | None:intergenic |
| TCCCACGCCTCTTGACCACG+AGG | 0.701146 | 6.3:+3669252 | None:intergenic |
| GTACAGGTAAACCCAAAACA+CGG | 0.723192 | 6.3:+3669319 | None:intergenic |
| CCATACAAGAGATTCACCAA+CGG | 0.727071 | 6.3:-3669606 | MS.gene20657:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATGTCATTAATATTGT+AGG | + | chr6.3:3669171-3669190 | None:intergenic | 20.0% |
| !! | ATTCATAAAAACAATGCTTT+GGG | - | chr6.3:3669188-3669207 | MS.gene20657:CDS | 20.0% |
| ! | ATATTTATACTTCGGCAAAT+TGG | - | chr6.3:3669444-3669463 | MS.gene20657:CDS | 25.0% |
| ! | GATTCATAAAAACAATGCTT+TGG | - | chr6.3:3669187-3669206 | MS.gene20657:CDS | 25.0% |
| ! | TAACATGCAAAATTACTTTC+AGG | - | chr6.3:3669589-3669608 | MS.gene20657:CDS | 25.0% |
| ! | TGCCGAAGTATAAATATATT+CGG | + | chr6.3:3669441-3669460 | None:intergenic | 25.0% |
| AATCTCTCAAAAGAATAACC+CGG | + | chr6.3:3669557-3669576 | None:intergenic | 30.0% | |
| ATTCAGGAATTAGAATTCAC+TGG | - | chr6.3:3668603-3668622 | MS.gene20657:CDS | 30.0% | |
| GGCCGAATATATTTATACTT+CGG | - | chr6.3:3669436-3669455 | MS.gene20657:CDS | 30.0% | |
| GTTCAGAAAACAACACTAAT+AGG | + | chr6.3:3669118-3669137 | None:intergenic | 30.0% | |
| !! | CTACGATTTTGGTGAAAATA+TGG | - | chr6.3:3669658-3669677 | MS.gene20657:CDS | 30.0% |
| !! | GGTTATTCTTTTGAGAGATT+TGG | - | chr6.3:3669557-3669576 | MS.gene20657:CDS | 30.0% |
| !!! | ATTAGTGTTGTTTTCTGAAC+AGG | - | chr6.3:3669118-3669137 | MS.gene20657:CDS | 30.0% |
| AAGTTATGTGTCAAGGGTTA+GGG | - | chr6.3:3668785-3668804 | MS.gene20657:intron | 35.0% | |
| AATTAGAATTCACTGGTGAG+AGG | - | chr6.3:3668610-3668629 | MS.gene20657:CDS | 35.0% | |
| ATTAGAATTCACTGGTGAGA+GGG | - | chr6.3:3668611-3668630 | MS.gene20657:CDS | 35.0% | |
| GGAAAGGTTCAAGATTATTC+AGG | - | chr6.3:3668587-3668606 | MS.gene20657:CDS | 35.0% | |
| TAAATATATTCGGCCAATGC+CGG | + | chr6.3:3669431-3669450 | None:intergenic | 35.0% | |
| TTATACTTCGGCAAATTGGA+TGG | - | chr6.3:3669448-3669467 | MS.gene20657:CDS | 35.0% | |
| TTGTATGGTTGTGGTTGATT+TGG | + | chr6.3:3668543-3668562 | None:intergenic | 35.0% | |
| ! | ATTGAGGAAGACTACGATTT+TGG | - | chr6.3:3669647-3669666 | MS.gene20657:CDS | 35.0% |
| !! | TTGATGATGAAGCTCTTGTT+TGG | + | chr6.3:3668476-3668495 | None:intergenic | 35.0% |
| AAAACACGGTTAATCTCCTG+GGG | + | chr6.3:3668831-3668850 | None:intergenic | 40.0% | |
| AAAATTACTTTCAGGCGACC+AGG | - | chr6.3:3669597-3669616 | MS.gene20657:CDS | 40.0% | |
| AAATTACTTTCAGGCGACCA+GGG | - | chr6.3:3669598-3669617 | MS.gene20657:CDS | 40.0% | |
| ACATGCAGATACAGTACAAG+AGG | - | chr6.3:3669528-3669547 | MS.gene20657:CDS | 40.0% | |
| AGCTGGAAGTTATGTGTCAA+GGG | - | chr6.3:3668779-3668798 | MS.gene20657:intron | 40.0% | |
| AGTTATGTGTCAAGGGTTAG+GGG | - | chr6.3:3668786-3668805 | MS.gene20657:intron | 40.0% | |
| ATAGGAGGATATTCAGCTTC+TGG | + | chr6.3:3669404-3669423 | None:intergenic | 40.0% | |
| CAAAACACGGTTAATCTCCT+GGG | + | chr6.3:3668832-3668851 | None:intergenic | 40.0% | |
| CCATACAAGAGATTCACCAA+CGG | - | chr6.3:3668555-3668574 | MS.gene20657:CDS | 40.0% | |
| CTGGGAGAATTTGAATGCAA+TGG | - | chr6.3:3668695-3668714 | MS.gene20657:CDS | 40.0% | |
| GAAGTTATGTGTCAAGGGTT+AGG | - | chr6.3:3668784-3668803 | MS.gene20657:intron | 40.0% | |
| GAGCAACAAATCGATAGCAA+TGG | - | chr6.3:3668728-3668747 | MS.gene20657:CDS | 40.0% | |
| GTACAGGTAAACCCAAAACA+CGG | + | chr6.3:3668845-3668864 | None:intergenic | 40.0% | |
| GTGAATCTCTTGTATGGTTG+TGG | + | chr6.3:3668552-3668571 | None:intergenic | 40.0% | |
| TGAATATCCTCCTATGCATC+CGG | - | chr6.3:3669409-3669428 | MS.gene20657:CDS | 40.0% | |
| ! | CAGGAGATTAACCGTGTTTT+GGG | - | chr6.3:3668831-3668850 | MS.gene20657:intron | 40.0% |
| ! | TGGTATTGGAAGCAAATCAG+TGG | + | chr6.3:3669015-3669034 | None:intergenic | 40.0% |
| !! | AGGGTTGATGAAAGAAGGAA+AGG | - | chr6.3:3668944-3668963 | MS.gene20657:CDS | 40.0% |
| !! | GGGTTGATGAAAGAAGGAAA+GGG | - | chr6.3:3668945-3668964 | MS.gene20657:CDS | 40.0% |
| !! | GGTTGATGAAAGAAGGAAAG+GGG | - | chr6.3:3668946-3668965 | MS.gene20657:CDS | 40.0% |
| !! | TATGGTTGTGGTTGATTTGG+TGG | + | chr6.3:3668540-3668559 | None:intergenic | 40.0% |
| !!! | TGTTTTGGGTTTACCTGTAC+CGG | - | chr6.3:3668845-3668864 | MS.gene20657:intron | 40.0% |
| AACAGGAGCAGATGGATGTA+GGG | - | chr6.3:3669135-3669154 | MS.gene20657:CDS | 45.0% | |
| AACCTGTTGTGTGAGAATGC+GGG | - | chr6.3:3669227-3669246 | MS.gene20657:CDS | 45.0% | |
| AACCTTGAGAGAGAAAGGCT+GGG | - | chr6.3:3668677-3668696 | MS.gene20657:CDS | 45.0% | |
| AAGAAGGAAAGGGGTGGAAA+AGG | - | chr6.3:3668955-3668974 | MS.gene20657:CDS | 45.0% | |
| ACAGTCAGATTTCTTCCCTC+AGG | - | chr6.3:3669712-3669731 | MS.gene20657:CDS | 45.0% | |
| ATACAGTACAAGAGGAAGCC+GGG | - | chr6.3:3669536-3669555 | MS.gene20657:CDS | 45.0% | |
| CAACCTGTTGTGTGAGAATG+CGG | - | chr6.3:3669226-3669245 | MS.gene20657:CDS | 45.0% | |
| CAACCTTGCCATTGTAGACT+CGG | + | chr6.3:3669303-3669322 | None:intergenic | 45.0% | |
| CCAAAACACGGTTAATCTCC+TGG | + | chr6.3:3668833-3668852 | None:intergenic | 45.0% | |
| GACAGAACCTTGAGAGAGAA+AGG | - | chr6.3:3668672-3668691 | MS.gene20657:CDS | 45.0% | |
| GAGCTGGAAGTTATGTGTCA+AGG | - | chr6.3:3668778-3668797 | MS.gene20657:intron | 45.0% | |
| GATACAGTACAAGAGGAAGC+CGG | - | chr6.3:3669535-3669554 | MS.gene20657:CDS | 45.0% | |
| GGGAAGAAATCTGACTGTGA+TGG | + | chr6.3:3669710-3669729 | None:intergenic | 45.0% | |
| TCAGATTTCTTCCCTCAGGA+TGG | - | chr6.3:3669716-3669735 | MS.gene20657:CDS | 45.0% | |
| TCTGTGATGTTGAGAGGAGA+AGG | - | chr6.3:3668871-3668890 | MS.gene20657:intron | 45.0% | |
| TGATAGGCACTTGAGACTTG+AGG | + | chr6.3:3669280-3669299 | None:intergenic | 45.0% | |
| TGATGAAAGAAGGAAAGGGG+TGG | - | chr6.3:3668949-3668968 | MS.gene20657:CDS | 45.0% | |
| ! | ATCCTTTGAGGGTTGTTCGT+TGG | + | chr6.3:3668987-3669006 | None:intergenic | 45.0% |
| ! | CAGTGGTGTCAATCCTTTGA+GGG | + | chr6.3:3668998-3669017 | None:intergenic | 45.0% |
| ! | CCAGGAGATTAACCGTGTTT+TGG | - | chr6.3:3668830-3668849 | MS.gene20657:intron | 45.0% |
| ! | CCGTTGGTGAATCTCTTGTA+TGG | + | chr6.3:3668558-3668577 | None:intergenic | 45.0% |
| ! | GTTTTCTGAACAGGAGCAGA+TGG | - | chr6.3:3669127-3669146 | MS.gene20657:CDS | 45.0% |
| ! | TCAGTGGTGTCAATCCTTTG+AGG | + | chr6.3:3668999-3669018 | None:intergenic | 45.0% |
| ! | TCCTTTGAGGGTTGTTCGTT+GGG | + | chr6.3:3668986-3669005 | None:intergenic | 45.0% |
| !! | AGCAGAAGTACTCACAATGG+TGG | + | chr6.3:3669063-3669082 | None:intergenic | 45.0% |
| !! | AGCAGCAGAAGTACTCACAA+TGG | + | chr6.3:3669066-3669085 | None:intergenic | 45.0% |
| !! | CTCGTAGGGTTGATGAAAGA+AGG | - | chr6.3:3668939-3668958 | MS.gene20657:CDS | 45.0% |
| !! | GAGGATTGATTTTAGTCCCC+AGG | - | chr6.3:3668812-3668831 | MS.gene20657:intron | 45.0% |
| !! | TGGTTGTACTTCGGTGTTGT+CGG | + | chr6.3:3668436-3668455 | None:intergenic | 45.0% |
| AATGCAGTCTGTGAGAGAGC+TGG | - | chr6.3:3668762-3668781 | MS.gene20657:intron | 50.0% | |
| ACCCAACGAACAACCCTCAA+AGG | - | chr6.3:3668982-3669001 | MS.gene20657:CDS | 50.0% | |
| ATTCACCAACGGAGAAGCAG+AGG | - | chr6.3:3668566-3668585 | MS.gene20657:CDS | 50.0% | |
| CGAGTCTACAATGGCAAGGT+TGG | - | chr6.3:3669301-3669320 | MS.gene20657:CDS | 50.0% | |
| CGTGGGATGAACTACTCGTA+GGG | - | chr6.3:3668925-3668944 | MS.gene20657:intron | 50.0% | |
| CTGCATGTTAGCGAACTGCT+GGG | + | chr6.3:3669516-3669535 | None:intergenic | 50.0% | |
| GAACAGGAGCAGATGGATGT+AGG | - | chr6.3:3669134-3669153 | MS.gene20657:CDS | 50.0% | |
| GAACCTTGAGAGAGAAAGGC+TGG | - | chr6.3:3668676-3668695 | MS.gene20657:CDS | 50.0% | |
| GACTTGAGGAGTAAGTCTCC+CGG | + | chr6.3:3669266-3669285 | None:intergenic | 50.0% | |
| GCAGAGAGAGAAGGAGATTG+AGG | - | chr6.3:3669631-3669650 | MS.gene20657:CDS | 50.0% | |
| GCCTATCACCGAGTCTACAA+TGG | - | chr6.3:3669292-3669311 | MS.gene20657:CDS | 50.0% | |
| GCGTTTGCGTGGTTGTACTT+CGG | + | chr6.3:3668445-3668464 | None:intergenic | 50.0% | |
| GCTTCCAATACCAAGAGCCT+GGG | - | chr6.3:3669022-3669041 | MS.gene20657:CDS | 50.0% | |
| GGAGGATATTCAGCTTCTGG+TGG | + | chr6.3:3669401-3669420 | None:intergenic | 50.0% | |
| GGATAAAATGAACGACGCCC+AGG | + | chr6.3:3669042-3669061 | None:intergenic | 50.0% | |
| TCACCGAGTCTACAATGGCA+AGG | - | chr6.3:3669297-3669316 | MS.gene20657:CDS | 50.0% | |
| TCTGCATGTTAGCGAACTGC+TGG | + | chr6.3:3669517-3669536 | None:intergenic | 50.0% | |
| TGCTTCCAATACCAAGAGCC+TGG | - | chr6.3:3669021-3669040 | MS.gene20657:CDS | 50.0% | |
| TGTCAAGGGTTAGGGGTAAG+AGG | - | chr6.3:3668793-3668812 | MS.gene20657:intron | 50.0% | |
| TGTGAGTACTTCTGCTGCTG+CGG | - | chr6.3:3669067-3669086 | MS.gene20657:CDS | 50.0% | |
| TGTTGAGAGGAGAAGGCTGT+CGG | - | chr6.3:3668878-3668897 | MS.gene20657:intron | 50.0% | |
| ! | TGGTTGGGTGGTAGAGTGTT+AGG | + | chr6.3:3668501-3668520 | None:intergenic | 50.0% |
| ! | TTTGGGTTTACCTGTACCGG+CGG | - | chr6.3:3668848-3668867 | MS.gene20657:intron | 50.0% |
| !! | ATTTGGTGGTGGTTGGTCTG+CGG | + | chr6.3:3668526-3668545 | None:intergenic | 50.0% |
| !! | CTTCGGTGTTGTCGGAAGTT+CGG | + | chr6.3:3668428-3668447 | None:intergenic | 50.0% |
| !! | GCCATTGTAGACTCGGTGAT+AGG | + | chr6.3:3669296-3669315 | None:intergenic | 50.0% |
| !! | GGTTGTGGTTGATTTGGTGG+TGG | + | chr6.3:3668537-3668556 | None:intergenic | 50.0% |
| !! | GTGGTTGATTTGGTGGTGGT+TGG | + | chr6.3:3668533-3668552 | None:intergenic | 50.0% |
| !! | TTCGGTGTTGTCGGAAGTTC+GGG | + | chr6.3:3668427-3668446 | None:intergenic | 50.0% |
| AACTGCTGGGAGAAACGTGG+AGG | + | chr6.3:3669503-3669522 | None:intergenic | 55.0% | |
| CACCCGCATTCTCACACAAC+AGG | + | chr6.3:3669232-3669251 | None:intergenic | 55.0% | |
| CCAACGGAGAAGCAGAGGAA+AGG | - | chr6.3:3668571-3668590 | MS.gene20657:CDS | 55.0% | |
| CCTTTCCTCTGCTTCTCCGT+TGG | + | chr6.3:3668574-3668593 | None:intergenic | 55.0% | |
| CTCCCAGCCTTTCTCTCTCA+AGG | + | chr6.3:3668682-3668701 | None:intergenic | 55.0% | |
| CTCTCAACATCACAGACCGC+CGG | + | chr6.3:3668867-3668886 | None:intergenic | 55.0% | |
| GAGAGCTGAGCAGAGAGAGA+AGG | - | chr6.3:3669622-3669641 | MS.gene20657:CDS | 55.0% | |
| GCGTGGGATGAACTACTCGT+AGG | - | chr6.3:3668924-3668943 | MS.gene20657:intron | 55.0% | |
| GTCCTGGATGTCCATCCTGA+GGG | + | chr6.3:3669730-3669749 | None:intergenic | 55.0% | |
| GTTGAGAGGAGAAGGCTGTC+GGG | - | chr6.3:3668879-3668898 | MS.gene20657:intron | 55.0% | |
| TCCTCCTATGCATCCGGCAT+TGG | - | chr6.3:3669415-3669434 | MS.gene20657:CDS | 55.0% | |
| TGCGGGTGTGTTAGCAGAAC+CGG | - | chr6.3:3669244-3669263 | MS.gene20657:CDS | 55.0% | |
| TGTCCTGGATGTCCATCCTG+AGG | + | chr6.3:3669731-3669750 | None:intergenic | 55.0% | |
| TTCCCTCAGGATGGACATCC+AGG | - | chr6.3:3669725-3669744 | MS.gene20657:CDS | 55.0% | |
| ! | AAACTGGCCTCGTGGTCAAG+AGG | - | chr6.3:3668902-3668921 | MS.gene20657:intron | 55.0% |
| ! | ATTCAGCTTCTGGTGGTGCC+TGG | + | chr6.3:3669394-3669413 | None:intergenic | 55.0% |
| !! | TTTGGTGGTGGTTGGTCTGC+GGG | + | chr6.3:3668525-3668544 | None:intergenic | 55.0% |
| ACATCACAGACCGCCGGTAC+AGG | + | chr6.3:3668861-3668880 | None:intergenic | 60.0% | |
| ATGAACGACGCCCAGGCTCT+TGG | + | chr6.3:3669035-3669054 | None:intergenic | 60.0% | |
| CGGCGGTCTGTGATGTTGAG+AGG | - | chr6.3:3668865-3668884 | MS.gene20657:intron | 60.0% | |
| GACGCCCAGGCTCTTGGTAT+TGG | + | chr6.3:3669029-3669048 | None:intergenic | 60.0% | |
| GCCAATGCCGGATGCATAGG+AGG | + | chr6.3:3669419-3669438 | None:intergenic | 60.0% | |
| GCGAACTGCTGGGAGAAACG+TGG | + | chr6.3:3669506-3669525 | None:intergenic | 60.0% | |
| GCGGGTGTGTTAGCAGAACC+GGG | - | chr6.3:3669245-3669264 | MS.gene20657:CDS | 60.0% | |
| GGAGAAGGCTGTCGGGAAAC+TGG | - | chr6.3:3668886-3668905 | MS.gene20657:intron | 60.0% | |
| TCGGCCAATGCCGGATGCAT+AGG | + | chr6.3:3669422-3669441 | None:intergenic | 60.0% | |
| TCTCTGCTCAGCTCTCTCCC+TGG | + | chr6.3:3669618-3669637 | None:intergenic | 60.0% | |
| TGGTTGCGTGTGCGTTTGCG+TGG | + | chr6.3:3668456-3668475 | None:intergenic | 60.0% | |
| !! | GGTTGGTCTGCGGGTTGGTT+GGG | + | chr6.3:3668516-3668535 | None:intergenic | 60.0% |
| !! | TGGTTGGTCTGCGGGTTGGT+TGG | + | chr6.3:3668517-3668536 | None:intergenic | 60.0% |
| GCAGCACCAAGCACCACCAG+AGG | - | chr6.3:3669352-3669371 | MS.gene20657:CDS | 65.0% | |
| TCCCACGCCTCTTGACCACG+AGG | + | chr6.3:3668912-3668931 | None:intergenic | 65.0% | |
| ! | CTGTCGGGAAACTGGCCTCG+TGG | - | chr6.3:3668894-3668913 | MS.gene20657:intron | 65.0% |
| ! | GCCTCGTGGTCAAGAGGCGT+GGG | - | chr6.3:3668908-3668927 | MS.gene20657:intron | 65.0% |
| !! | GTGGTGGTTGGTCTGCGGGT+TGG | + | chr6.3:3668521-3668540 | None:intergenic | 65.0% |
| !! | TGGTCTGCGGGTTGGTTGGG+TGG | + | chr6.3:3668513-3668532 | None:intergenic | 65.0% |
| !! | TGGTGCCTGGTGCTGCTGGT+GGG | + | chr6.3:3669381-3669400 | None:intergenic | 65.0% |
| GGCCTCGTGGTCAAGAGGCG+TGG | - | chr6.3:3668907-3668926 | MS.gene20657:intron | 70.0% | |
| !! | CTGGTGGTGCCTGGTGCTGC+TGG | + | chr6.3:3669385-3669404 | None:intergenic | 70.0% |
| !! | GGTGCCTGGTGCTGCTGGTG+GGG | + | chr6.3:3669380-3669399 | None:intergenic | 70.0% |
| !! | GTGGTGCCTGGTGCTGCTGG+TGG | + | chr6.3:3669382-3669401 | None:intergenic | 70.0% |
| ! | GGGGCGCCTCTGGTGGTGCT+TGG | + | chr6.3:3669361-3669380 | None:intergenic | 75.0% |
| ! | TGCTGCTGGTGGGGCGCCTC+TGG | + | chr6.3:3669371-3669390 | None:intergenic | 75.0% |
| ! | TGCTGGTGGGGCGCCTCTGG+TGG | + | chr6.3:3669368-3669387 | None:intergenic | 75.0% |
| ! | GGCGCCCCACCAGCAGCACC+AGG | - | chr6.3:3669373-3669392 | MS.gene20657:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3668420 | 3669763 | 3668420 | ID=MS.gene20657 |
| chr6.3 | mRNA | 3668420 | 3669763 | 3668420 | ID=MS.gene20657.t1;Parent=MS.gene20657 |
| chr6.3 | exon | 3668935 | 3669763 | 3668935 | ID=MS.gene20657.t1.exon1;Parent=MS.gene20657.t1 |
| chr6.3 | CDS | 3668935 | 3669763 | 3668935 | ID=cds.MS.gene20657.t1;Parent=MS.gene20657.t1 |
| chr6.3 | exon | 3668420 | 3668775 | 3668420 | ID=MS.gene20657.t1.exon2;Parent=MS.gene20657.t1 |
| chr6.3 | CDS | 3668420 | 3668775 | 3668420 | ID=cds.MS.gene20657.t1;Parent=MS.gene20657.t1 |
| Gene Sequence |
| Protein sequence |
