Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20784.t1 | XP_003591445.3 | 98.3 | 230 | 2 | 2 | 1 | 229 | 46 | 274 | 3.50E-122 | 447.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20784.t1 | Q9LZK4 | 41.4 | 244 | 116 | 8 | 1 | 227 | 46 | 279 | 3.8e-32 | 139.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20784.t1 | A0A396JRX5 | 98.3 | 230 | 2 | 2 | 1 | 229 | 46 | 274 | 2.5e-122 | 447.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene20784 | 0.826845 | 2.17E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene20784 | 0.820826 | 5.59E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene20784 | 0.824078 | 9.81E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene20784 | 0.824454 | 8.00E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene20784 | 0.816095 | 6.60E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene20784 | -0.822051 | 2.91E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene20784 | 0.802395 | 5.73E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene20784 | 0.84751 | 1.11E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene20784 | 0.803871 | 2.83E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene20784 | 0.832119 | 1.13E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene20784 | 0.804376 | 2.23E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene20784 | 0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene20784 | 0.827335 | 1.66E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene20784 | 0.811487 | 6.83E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene20784 | 0.837021 | 6.64E-57 | -1.69E-46 |
| MS.gene054185 | MS.gene20784 | 0.835249 | 1.87E-56 | -1.69E-46 |
| MS.gene056875 | MS.gene20784 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene20784 | 0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene20784 | 0.831317 | 1.79E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene20784 | 0.814227 | 1.71E-51 | -1.69E-46 |
| MS.gene059124 | MS.gene20784 | 0.800195 | 1.62E-48 | -1.69E-46 |
| MS.gene059421 | MS.gene20784 | 0.835574 | 1.55E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene20784 | 0.834188 | 3.46E-56 | -1.69E-46 |
| MS.gene060404 | MS.gene20784 | 0.82182 | 3.30E-53 | -1.69E-46 |
| MS.gene060986 | MS.gene20784 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene20784 | 0.809005 | 2.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTTGAAGGATTATTA+AGG | 0.269142 | 1.2:+65713794 | None:intergenic |
| GAATTATGTGACGACATCTT+AGG | 0.277715 | 1.2:+65717621 | MS.gene20784:CDS |
| GTACGTGGAATTTGAACTTC+TGG | 0.344780 | 1.2:-65717510 | None:intergenic |
| TCCACACTACTTATGGTAAC+AGG | 0.346473 | 1.2:+65713914 | MS.gene20784:CDS |
| ATTTCATTGTCCGTTCTTCC+TGG | 0.346810 | 1.2:-65717294 | None:intergenic |
| GACAATGGAAAATTGTTTGC+TGG | 0.348197 | 1.2:+65717710 | MS.gene20784:CDS |
| GTGAAGCTCCACACTACTTA+TGG | 0.384648 | 1.2:+65713907 | MS.gene20784:CDS |
| AAGACTGTCTCCATCATCAT+TGG | 0.394370 | 1.2:-65717811 | None:intergenic |
| GGACGAACATCCATGATCTT+TGG | 0.402215 | 1.2:-65717387 | None:intergenic |
| AAGTCAAGAGAGAGAAATGA+TGG | 0.429496 | 1.2:+65717758 | MS.gene20784:CDS |
| TGGCAAGTGGCTAGCTATCA+TGG | 0.430055 | 1.2:-65717274 | None:intergenic |
| AATTATGTGACGACATCTTA+GGG | 0.454312 | 1.2:+65717622 | MS.gene20784:CDS |
| AACTATAGAGCCAAAGATCA+TGG | 0.469285 | 1.2:+65717377 | MS.gene20784:CDS |
| GAAAGAACAACCAATGATGA+TGG | 0.472679 | 1.2:+65717801 | MS.gene20784:CDS |
| GAGAGAGAAATGATGGGTGA+TGG | 0.498146 | 1.2:+65717765 | MS.gene20784:CDS |
| ATGTGGTAAAACAAGTCGTT+GGG | 0.503146 | 1.2:+65717422 | MS.gene20784:CDS |
| TTGAAGGATTATTAAGGTGC+GGG | 0.508154 | 1.2:+65713800 | None:intergenic |
| TTGAGAACTGACCTCAAAAG+AGG | 0.515320 | 1.2:+65713853 | MS.gene20784:CDS |
| ATGATAGCTAGCCACTTGCC+AGG | 0.516667 | 1.2:+65717276 | MS.gene20784:CDS |
| GGAAGAGTTGTAGACTAAGA+TGG | 0.530001 | 1.2:+65713821 | MS.gene20784:CDS |
| GATCTTTGGCTCTATAGTTG+TGG | 0.535260 | 1.2:-65717373 | None:intergenic |
| TGCTGAGGTGAGAATTCCAA+TGG | 0.535972 | 1.2:-65717323 | None:intergenic |
| TTACCACATTTACGCTTAGG+AGG | 0.541585 | 1.2:-65717408 | None:intergenic |
| AGGAAACATATCTGCTCAAG+AGG | 0.548913 | 1.2:+65713873 | MS.gene20784:CDS |
| AATGTGGTAAAACAAGTCGT+TGG | 0.554279 | 1.2:+65717421 | MS.gene20784:CDS |
| ATGACATTAATGAAGACAGT+GGG | 0.566755 | 1.2:+65717661 | MS.gene20784:CDS |
| AGAGAAATGATGGGTGATGG+AGG | 0.569392 | 1.2:+65717768 | MS.gene20784:CDS |
| TGTCCGTTCTTCCTGGCAAG+TGG | 0.570131 | 1.2:-65717287 | None:intergenic |
| TAGCCACTTGCCAGGAAGAA+CGG | 0.570228 | 1.2:+65717284 | MS.gene20784:CDS |
| AATTGTTTGCTGGAAACAAG+TGG | 0.575262 | 1.2:+65717720 | MS.gene20784:CDS |
| TTTGAAGGATTATTAAGGTG+CGG | 0.594972 | 1.2:+65713799 | None:intergenic |
| AGTCAAGAGAGAGAAATGAT+GGG | 0.595941 | 1.2:+65717759 | MS.gene20784:CDS |
| CAATCTAGTGAAGGAGTACG+TGG | 0.611516 | 1.2:-65717525 | None:intergenic |
| AAGTACTCATGTCAAGACAA+TGG | 0.614680 | 1.2:+65717695 | MS.gene20784:CDS |
| ATTGTTTGCTGGAAACAAGT+GGG | 0.617843 | 1.2:+65717721 | MS.gene20784:CDS |
| CGTCCTCCTAAGCGTAAATG+TGG | 0.619864 | 1.2:+65717405 | MS.gene20784:CDS |
| ACCTGTTACCATAAGTAGTG+TGG | 0.624649 | 1.2:-65713915 | None:intergenic |
| GAAAATAATTGATGACGTGG+AGG | 0.627952 | 1.2:+65717563 | MS.gene20784:CDS |
| ACAACTTCACAATCTAGTGA+AGG | 0.654135 | 1.2:-65717534 | None:intergenic |
| AGAGAAAATAATTGATGACG+TGG | 0.669316 | 1.2:+65717560 | MS.gene20784:CDS |
| GATGACATTAATGAAGACAG+TGG | 0.688798 | 1.2:+65717660 | MS.gene20784:CDS |
| AGTAGTGTGGAGCTTCACAA+TGG | 0.695094 | 1.2:-65713902 | None:intergenic |
| TGACATTAATGAAGACAGTG+GGG | 0.734598 | 1.2:+65717662 | MS.gene20784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAATAAAATACTTTAT+AGG | - | chr1.2:65716502-65716521 | None:intergenic | 10.0% |
| !!! | ATAATAGACTTTTTAAATAT+AGG | - | chr1.2:65715646-65715665 | None:intergenic | 10.0% |
| !!! | ATTTACATATTTTAAAGTTA+GGG | + | chr1.2:65714415-65714434 | MS.gene20784:intron | 10.0% |
| !!! | ATTTTCTTTAGTATTAATAA+CGG | - | chr1.2:65717481-65717500 | None:intergenic | 10.0% |
| !!! | CTATAAAGTATTTTATTTTT+TGG | + | chr1.2:65716500-65716519 | MS.gene20784:intron | 10.0% |
| !!! | TATTTTATCTACTTTTAAAT+AGG | + | chr1.2:65715410-65715429 | MS.gene20784:intron | 10.0% |
| !! | AAAAAAACTCTTAAATTTGA+TGG | - | chr1.2:65714109-65714128 | None:intergenic | 15.0% |
| !! | AAAAAACTCTTAAATTTGAT+GGG | - | chr1.2:65714108-65714127 | None:intergenic | 15.0% |
| !! | AAAAATTATTCCAGTTTAAT+TGG | - | chr1.2:65714569-65714588 | None:intergenic | 15.0% |
| !! | AAAATCCTATTTAAGTAAAT+AGG | - | chr1.2:65715800-65715819 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAATCACAAAT+TGG | + | chr1.2:65717076-65717095 | MS.gene20784:intron | 15.0% |
| !! | AAAGAAAAACAAATATCATA+AGG | + | chr1.2:65716555-65716574 | MS.gene20784:intron | 15.0% |
| !! | ATAATATAGTTCAAATACAT+CGG | - | chr1.2:65716343-65716362 | None:intergenic | 15.0% |
| !! | ATTATTACAAATAAAGACAT+AGG | - | chr1.2:65714068-65714087 | None:intergenic | 15.0% |
| !! | TTTATTTGTAATAATGTAGA+TGG | + | chr1.2:65714073-65714092 | MS.gene20784:intron | 15.0% |
| !!! | AAAATTTACCCTTTTTATTT+AGG | + | chr1.2:65714017-65714036 | MS.gene20784:intron | 15.0% |
| !!! | AACAAAATCTTTAAAATAGA+GGG | - | chr1.2:65716235-65716254 | None:intergenic | 15.0% |
| !!! | AACAATTTAGTAGTTTTATT+TGG | - | chr1.2:65714865-65714884 | None:intergenic | 15.0% |
| !!! | AATTATGATTTGAAGTTTAT+TGG | + | chr1.2:65717229-65717248 | MS.gene20784:intron | 15.0% |
| !!! | ATCATTTTGCTAATAAATTT+TGG | + | chr1.2:65717142-65717161 | MS.gene20784:intron | 15.0% |
| !!! | ATTATGATTTGAAGTTTATT+GGG | + | chr1.2:65717230-65717249 | MS.gene20784:intron | 15.0% |
| !!! | CATTTACATATTTTAAAGTT+AGG | + | chr1.2:65714414-65714433 | MS.gene20784:intron | 15.0% |
| !!! | TAATGACTTTTATAATAAGT+AGG | - | chr1.2:65715383-65715402 | None:intergenic | 15.0% |
| !!! | TTTTCCTACTTAAAAAAATA+AGG | - | chr1.2:65716739-65716758 | None:intergenic | 15.0% |
| !!! | TTTTCCTTATTTTTTTAAGT+AGG | + | chr1.2:65716732-65716751 | MS.gene20784:intron | 15.0% |
| !! | AAGAATGATCCTAAATAAAA+AGG | - | chr1.2:65714029-65714048 | None:intergenic | 20.0% |
| !! | AATAAGTACTAGTAATTTCA+AGG | + | chr1.2:65715112-65715131 | MS.gene20784:intron | 20.0% |
| !! | AATATACTAGTATATACACA+AGG | + | chr1.2:65717202-65717221 | MS.gene20784:intron | 20.0% |
| !! | ACAATGAAATTAAAAACCAT+TGG | + | chr1.2:65717307-65717326 | MS.gene20784:CDS | 20.0% |
| !! | AGAATGATCCTAAATAAAAA+GGG | - | chr1.2:65714028-65714047 | None:intergenic | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | + | chr1.2:65715497-65715516 | MS.gene20784:intron | 20.0% |
| !! | TCTTTATAATGTCCTAATAA+AGG | + | chr1.2:65715171-65715190 | MS.gene20784:intron | 20.0% |
| !! | TTGAATAAGTAGAAAATCTA+GGG | - | chr1.2:65716860-65716879 | None:intergenic | 20.0% |
| !!! | AATGACAAAGTTTTTTTTGA+AGG | - | chr1.2:65714223-65714242 | None:intergenic | 20.0% |
| !!! | AATTCTACACGTTATTATTT+TGG | - | chr1.2:65714773-65714792 | None:intergenic | 20.0% |
| !!! | ATTCTACACGTTATTATTTT+GGG | - | chr1.2:65714772-65714791 | None:intergenic | 20.0% |
| !!! | ATTTTAGGTACAATAATAGA+GGG | - | chr1.2:65714695-65714714 | None:intergenic | 20.0% |
| !!! | CAACAAAATCTTTAAAATAG+AGG | - | chr1.2:65716236-65716255 | None:intergenic | 20.0% |
| !!! | CTAGTACTTATTATTTTTTG+AGG | - | chr1.2:65715104-65715123 | None:intergenic | 20.0% |
| !!! | CTCTATTTTAAAGATTTTGT+TGG | + | chr1.2:65716234-65716253 | MS.gene20784:intron | 20.0% |
| !!! | CTTTGTCATTAATTATTTCT+TGG | + | chr1.2:65714233-65714252 | MS.gene20784:intron | 20.0% |
| !!! | CTTTTTAAATATAGGCTTTA+AGG | - | chr1.2:65715638-65715657 | None:intergenic | 20.0% |
| !!! | TAATAAATTTTGGCATAAAG+TGG | + | chr1.2:65717152-65717171 | MS.gene20784:intron | 20.0% |
| !!! | TAGTAGTACGTATTATTTTT+TGG | + | chr1.2:65717049-65717068 | MS.gene20784:intron | 20.0% |
| !!! | TATTTTAGGTACAATAATAG+AGG | - | chr1.2:65714696-65714715 | None:intergenic | 20.0% |
| !!! | TTTTAATAACATGCATAAAC+AGG | + | chr1.2:65715729-65715748 | MS.gene20784:intron | 20.0% |
| !!! | TTTTTCTTACGAAAAAACAA+AGG | - | chr1.2:65714619-65714638 | None:intergenic | 20.0% |
| ! | AAATATGTAAATGAAGAGTG+TGG | - | chr1.2:65714407-65714426 | None:intergenic | 25.0% |
| ! | AAGTACACGTTATTAATTAG+TGG | - | chr1.2:65714740-65714759 | None:intergenic | 25.0% |
| ! | AATATTTGATAGAAGAACAC+GGG | - | chr1.2:65716296-65716315 | None:intergenic | 25.0% |
| ! | AATTGAATGAACCTAGAAAT+TGG | - | chr1.2:65715473-65715492 | None:intergenic | 25.0% |
| ! | AGGAAAATGCTAATTACTTA+AGG | - | chr1.2:65716719-65716738 | None:intergenic | 25.0% |
| ! | AGGACATTATAAAGAAAATC+CGG | - | chr1.2:65715166-65715185 | None:intergenic | 25.0% |
| ! | ATACTTTATAGGAAAACAGT+TGG | - | chr1.2:65716491-65716510 | None:intergenic | 25.0% |
| ! | CTTGACCTATTTACTTAAAT+AGG | + | chr1.2:65715792-65715811 | MS.gene20784:intron | 25.0% |
| ! | GAATATTTGATAGAAGAACA+CGG | - | chr1.2:65716297-65716316 | None:intergenic | 25.0% |
| ! | GTTGAATAAGTAGAAAATCT+AGG | - | chr1.2:65716861-65716880 | None:intergenic | 25.0% |
| ! | TAAGCAAAAATCCAATTTCT+AGG | + | chr1.2:65715459-65715478 | MS.gene20784:intron | 25.0% |
| ! | TAATGTTTCACCAAATTGTT+AGG | - | chr1.2:65717015-65717034 | None:intergenic | 25.0% |
| ! | TACTTATTCAACGATACAAA+CGG | + | chr1.2:65716869-65716888 | MS.gene20784:intron | 25.0% |
| ! | TTCTTAAGAAACATTGACAT+TGG | + | chr1.2:65716424-65716443 | MS.gene20784:intron | 25.0% |
| !! | AAATTTAAAATACTCGTGTC+AGG | + | chr1.2:65714531-65714550 | MS.gene20784:intron | 25.0% |
| !! | ACACTACACGTTATTATTTT+AGG | - | chr1.2:65714710-65714729 | None:intergenic | 25.0% |
| !! | ATTTGGTGAAACATTAAATG+AGG | + | chr1.2:65717019-65717038 | MS.gene20784:intron | 25.0% |
| !! | GTGGAATATTAATTTTGTGT+TGG | - | chr1.2:65714360-65714379 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr1.2:65715558-65715577 | MS.gene20784:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr1.2:65715577-65715558 | None:intergenic | 25.0% |
| !!! | AAAATCTTTAAAATAGAGGG+AGG | - | chr1.2:65716232-65716251 | None:intergenic | 25.0% |
| !!! | ACAAATTGGTCTTTGAATAT+GGG | + | chr1.2:65717090-65717109 | MS.gene20784:intron | 25.0% |
| !!! | ACTTTAGAATTGCTTTTTCT+AGG | + | chr1.2:65714298-65714317 | MS.gene20784:intron | 25.0% |
| !!! | TATGTTTTGGAATAATTCGT+GGG | + | chr1.2:65714657-65714676 | MS.gene20784:intron | 25.0% |
| !!! | TCGGTTGGTAATATAATATA+CGG | + | chr1.2:65716819-65716838 | MS.gene20784:intron | 25.0% |
| !!! | TGAGTAGTACTATTTTTTGA+TGG | + | chr1.2:65716914-65716933 | MS.gene20784:intron | 25.0% |
| !!! | TTTAAGAAAAGTGCTAAAGT+TGG | - | chr1.2:65713995-65714014 | None:intergenic | 25.0% |
| !!! | TTTAGTAGTTTTATTTGGAG+AGG | - | chr1.2:65714860-65714879 | None:intergenic | 25.0% |
| AAAATGAATAAGAGATCACG+TGG | - | chr1.2:65714379-65714398 | None:intergenic | 30.0% | |
| AACGTGCACAAAATGATAAT+TGG | + | chr1.2:65715941-65715960 | MS.gene20784:intron | 30.0% | |
| AATGCTTGTCTACCATTATA+AGG | + | chr1.2:65715612-65715631 | MS.gene20784:intron | 30.0% | |
| AATTATGTGACGACATCTTA+GGG | + | chr1.2:65717622-65717641 | MS.gene20784:CDS | 30.0% | |
| ACGTGCACAAAATGATAATT+GGG | + | chr1.2:65715942-65715961 | MS.gene20784:intron | 30.0% | |
| ACGTTTATCAATTCATCAGT+AGG | - | chr1.2:65715926-65715945 | None:intergenic | 30.0% | |
| ATGACATTAATGAAGACAGT+GGG | + | chr1.2:65717661-65717680 | MS.gene20784:CDS | 30.0% | |
| CACGAATTATTCCAAAACAT+AGG | - | chr1.2:65714658-65714677 | None:intergenic | 30.0% | |
| CGTTTATCAATTCATCAGTA+GGG | - | chr1.2:65715925-65715944 | None:intergenic | 30.0% | |
| GACAAGCATTACAATGAAAT+AGG | - | chr1.2:65715602-65715621 | None:intergenic | 30.0% | |
| GTCATTGTTTCCAATTAAAC+TGG | + | chr1.2:65714556-65714575 | MS.gene20784:intron | 30.0% | |
| TAAGCAAAAATCCACTTTCT+AGG | - | chr1.2:65715548-65715567 | None:intergenic | 30.0% | |
| TAAGTAAATAGGTCAAGCTT+AGG | - | chr1.2:65715789-65715808 | None:intergenic | 30.0% | |
| TAATAAGTAGGCCTGTAAAT+AGG | - | chr1.2:65715371-65715390 | None:intergenic | 30.0% | |
| TATTGAATGAACCTAGAAAG+TGG | + | chr1.2:65715534-65715553 | MS.gene20784:intron | 30.0% | |
| TTATTAAAAAGGCTAGGCTT+AGG | - | chr1.2:65715830-65715849 | None:intergenic | 30.0% | |
| ! | ATTTGAGTGACTTGAAGTTT+TGG | - | chr1.2:65716101-65716120 | None:intergenic | 30.0% |
| ! | TTTAAAGTGCCCAAAAAAGA+CGG | - | chr1.2:65716957-65716976 | None:intergenic | 30.0% |
| ! | TTTGGGCACTTTAAAAATCA+TGG | + | chr1.2:65716962-65716981 | MS.gene20784:intron | 30.0% |
| !! | AACAGTAGTACTGATGAATA+GGG | + | chr1.2:65715196-65715215 | MS.gene20784:intron | 30.0% |
| !! | AGAGAAAATAATTGATGACG+TGG | + | chr1.2:65717560-65717579 | MS.gene20784:CDS | 30.0% |
| !! | CACAAATTGGTCTTTGAATA+TGG | + | chr1.2:65717089-65717108 | MS.gene20784:intron | 30.0% |
| !! | TAAATTTTGGCATAAAGTGG+TGG | + | chr1.2:65717155-65717174 | MS.gene20784:intron | 30.0% |
| !!! | AGGCTTACAATTTTTTTCGT+AGG | - | chr1.2:65715269-65715288 | None:intergenic | 30.0% |
| !!! | CTATGTTTTGGAATAATTCG+TGG | + | chr1.2:65714656-65714675 | MS.gene20784:intron | 30.0% |
| !!! | TACAATTTTTTTCGTAGGTC+AGG | - | chr1.2:65715264-65715283 | None:intergenic | 30.0% |
| AAAAATTGTAAGCCTGAGTC+TGG | + | chr1.2:65715274-65715293 | MS.gene20784:intron | 35.0% | |
| AAAAGCCTACGAAACCTAAT+AGG | - | chr1.2:65715759-65715778 | None:intergenic | 35.0% | |
| AACTATAGAGCCAAAGATCA+TGG | + | chr1.2:65717377-65717396 | MS.gene20784:CDS | 35.0% | |
| AAGTACTCATGTCAAGACAA+TGG | + | chr1.2:65717695-65717714 | MS.gene20784:CDS | 35.0% | |
| AAGTCAAGAGAGAGAAATGA+TGG | + | chr1.2:65717758-65717777 | MS.gene20784:CDS | 35.0% | |
| AATAACATGCATAAACAGGC+CGG | + | chr1.2:65715733-65715752 | MS.gene20784:intron | 35.0% | |
| AATGTGGTAAAACAAGTCGT+TGG | + | chr1.2:65717421-65717440 | MS.gene20784:CDS | 35.0% | |
| ACAACTTCACAATCTAGTGA+AGG | - | chr1.2:65717537-65717556 | None:intergenic | 35.0% | |
| ACCTGGCCTGTTTATTAAAA+AGG | - | chr1.2:65715841-65715860 | None:intergenic | 35.0% | |
| AGACATAGGCTAAATATACG+TGG | - | chr1.2:65714054-65714073 | None:intergenic | 35.0% | |
| AGTCAAGAGAGAGAAATGAT+GGG | + | chr1.2:65717759-65717778 | MS.gene20784:CDS | 35.0% | |
| AGTTGAATACTATTGTCAGC+AGG | - | chr1.2:65716138-65716157 | None:intergenic | 35.0% | |
| ATAGGCCTATGAAAAGCTAT+AGG | - | chr1.2:65715300-65715319 | None:intergenic | 35.0% | |
| ATCAATTCATCAGTAGGGTT+GGG | - | chr1.2:65715920-65715939 | None:intergenic | 35.0% | |
| ATGTGGTAAAACAAGTCGTT+GGG | + | chr1.2:65717422-65717441 | MS.gene20784:CDS | 35.0% | |
| ATTGACATTGGCACTATACT+TGG | + | chr1.2:65716436-65716455 | MS.gene20784:intron | 35.0% | |
| CCTGCAAACTATTCTTATAC+TGG | + | chr1.2:65715033-65715052 | MS.gene20784:intron | 35.0% | |
| CGTGCACAAAATGATAATTG+GGG | + | chr1.2:65715943-65715962 | MS.gene20784:intron | 35.0% | |
| CTATTCATCAGTACTACTGT+TGG | - | chr1.2:65715197-65715216 | None:intergenic | 35.0% | |
| GAATTATGTGACGACATCTT+AGG | + | chr1.2:65717621-65717640 | MS.gene20784:CDS | 35.0% | |
| GACAATGGAAAATTGTTTGC+TGG | + | chr1.2:65717710-65717729 | MS.gene20784:CDS | 35.0% | |
| GACATAGGCTAAATATACGT+GGG | - | chr1.2:65714053-65714072 | None:intergenic | 35.0% | |
| GATGACATTAATGAAGACAG+TGG | + | chr1.2:65717660-65717679 | MS.gene20784:CDS | 35.0% | |
| GCCTGTTTATTAAAAAGGCT+AGG | - | chr1.2:65715836-65715855 | None:intergenic | 35.0% | |
| TAGGTACAATAATAGAGGGT+GGG | - | chr1.2:65714691-65714710 | None:intergenic | 35.0% | |
| TATCAATTCATCAGTAGGGT+TGG | - | chr1.2:65715921-65715940 | None:intergenic | 35.0% | |
| TCACACCAAAAAGTTATTCC+TGG | + | chr1.2:65714960-65714979 | MS.gene20784:intron | 35.0% | |
| TGACATTAATGAAGACAGTG+GGG | + | chr1.2:65717662-65717681 | MS.gene20784:CDS | 35.0% | |
| TTAGGTACAATAATAGAGGG+TGG | - | chr1.2:65714692-65714711 | None:intergenic | 35.0% | |
| ! | AACTGTAGATTTTTCTGCTG+AGG | - | chr1.2:65717341-65717360 | None:intergenic | 35.0% |
| ! | AATTGTTTGCTGGAAACAAG+TGG | + | chr1.2:65717720-65717739 | MS.gene20784:CDS | 35.0% |
| ! | ATTGGGTTTGTGTGATTTTC+AGG | + | chr1.2:65717247-65717266 | MS.gene20784:intron | 35.0% |
| ! | ATTGTTTGCTGGAAACAAGT+GGG | + | chr1.2:65717721-65717740 | MS.gene20784:CDS | 35.0% |
| ! | CAGATATGTTTCCTCTTTTG+AGG | - | chr1.2:65713867-65713886 | None:intergenic | 35.0% |
| ! | CCAGTATAAGAATAGTTTGC+AGG | - | chr1.2:65715036-65715055 | None:intergenic | 35.0% |
| ! | GTAGCTTTTGTTCTTCTTCA+TGG | - | chr1.2:65717448-65717467 | None:intergenic | 35.0% |
| ! | GTTTTACCACATTTACGCTT+AGG | - | chr1.2:65717414-65717433 | None:intergenic | 35.0% |
| ! | TATCGTACGTACCTATGTTT+TGG | + | chr1.2:65714644-65714663 | MS.gene20784:intron | 35.0% |
| ! | TTAAAGTGCCCAAAAAAGAC+GGG | - | chr1.2:65716956-65716975 | None:intergenic | 35.0% |
| ! | TTGGTCTTTGAATATGGGTT+TGG | + | chr1.2:65717095-65717114 | MS.gene20784:intron | 35.0% |
| ! | TTTCTGACATTCGTTTGTTG+AGG | - | chr1.2:65714993-65715012 | None:intergenic | 35.0% |
| !! | AATAATAGAGGGTGGGTTTT+AGG | - | chr1.2:65714684-65714703 | None:intergenic | 35.0% |
| !! | ACTTGAAGTTTTGGTGACTT+TGG | - | chr1.2:65716092-65716111 | None:intergenic | 35.0% |
| !! | ATAATAGAGGGTGGGTTTTA+GGG | - | chr1.2:65714683-65714702 | None:intergenic | 35.0% |
| !! | CAACAGTAGTACTGATGAAT+AGG | + | chr1.2:65715195-65715214 | MS.gene20784:intron | 35.0% |
| !! | GAAAATAATTGATGACGTGG+AGG | + | chr1.2:65717563-65717582 | MS.gene20784:CDS | 35.0% |
| !! | GCCTAGCCTTTTTAATAAAC+AGG | + | chr1.2:65715832-65715851 | MS.gene20784:intron | 35.0% |
| !! | TACTACTGTTGGCCTTTATT+AGG | - | chr1.2:65715186-65715205 | None:intergenic | 35.0% |
| !! | TAGGCTTTAAGGCCTTATAA+TGG | - | chr1.2:65715627-65715646 | None:intergenic | 35.0% |
| !! | TAGTACTGATGAATAGGGTT+GGG | + | chr1.2:65715201-65715220 | MS.gene20784:intron | 35.0% |
| !!! | TTGCTTTTTCTAGGTTCTAC+TGG | + | chr1.2:65714307-65714326 | MS.gene20784:intron | 35.0% |
| AACATAGGTACGTACGATAC+TGG | - | chr1.2:65714643-65714662 | None:intergenic | 40.0% | |
| AATAGGCTAAATACACCCTC+CGG | + | chr1.2:65715427-65715446 | MS.gene20784:intron | 40.0% | |
| ACCTGTTACCATAAGTAGTG+TGG | - | chr1.2:65713918-65713937 | None:intergenic | 40.0% | |
| AGGAAACATATCTGCTCAAG+AGG | + | chr1.2:65713873-65713892 | MS.gene20784:CDS | 40.0% | |
| ATTTCATTGTCCGTTCTTCC+TGG | - | chr1.2:65717297-65717316 | None:intergenic | 40.0% | |
| CAAATTTGAGAGTTGACCGT+AGG | + | chr1.2:65714144-65714163 | MS.gene20784:intron | 40.0% | |
| CACCAAATTGTTAGGCATGT+GGG | - | chr1.2:65717007-65717026 | None:intergenic | 40.0% | |
| GCCTGACATATCTAAAAGTC+TGG | + | chr1.2:65715332-65715351 | MS.gene20784:intron | 40.0% | |
| GGAAGAGTTGTAGACTAAGA+TGG | + | chr1.2:65713821-65713840 | MS.gene20784:CDS | 40.0% | |
| GTACGTGGAATTTGAACTTC+TGG | - | chr1.2:65717513-65717532 | None:intergenic | 40.0% | |
| GTAGTTACGTTAGCATAGCT+CGG | + | chr1.2:65716800-65716819 | MS.gene20784:intron | 40.0% | |
| TAGATCGAAACAAGACCACT+AGG | - | chr1.2:65715978-65715997 | None:intergenic | 40.0% | |
| TAGCCTGAAAGCCTATTTAC+AGG | + | chr1.2:65715357-65715376 | MS.gene20784:intron | 40.0% | |
| TCACCAAATTGTTAGGCATG+TGG | - | chr1.2:65717008-65717027 | None:intergenic | 40.0% | |
| TCCACACTACTTATGGTAAC+AGG | + | chr1.2:65713914-65713933 | MS.gene20784:CDS | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1.2:65715562-65715581 | MS.gene20784:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr1.2:65715581-65715562 | None:intergenic | 40.0% | |
| TGTAAATAGGCTTTCAGGCT+AGG | - | chr1.2:65715358-65715377 | None:intergenic | 40.0% | |
| TTACCACATTTACGCTTAGG+AGG | - | chr1.2:65717411-65717430 | None:intergenic | 40.0% | |
| TTGAGAACTGACCTCAAAAG+AGG | + | chr1.2:65713853-65713872 | MS.gene20784:CDS | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1.2:65715561-65715580 | MS.gene20784:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr1.2:65715580-65715561 | None:intergenic | 40.0% | |
| TTGGGGTATATTTGTCCTAG+TGG | + | chr1.2:65715960-65715979 | MS.gene20784:intron | 40.0% | |
| TTTGGCATAAAGTGGTGGTA+CGG | + | chr1.2:65717160-65717179 | MS.gene20784:intron | 40.0% | |
| ! | ACTTTTAGATATGTCAGGCC+AGG | - | chr1.2:65715331-65715350 | None:intergenic | 40.0% |
| ! | CGGATCCAGGAATAACTTTT+TGG | - | chr1.2:65714968-65714987 | None:intergenic | 40.0% |
| ! | GCCAGACTTTTAGATATGTC+AGG | - | chr1.2:65715336-65715355 | None:intergenic | 40.0% |
| ! | GCCTTTTTAATAAACAGGCC+AGG | + | chr1.2:65715837-65715856 | MS.gene20784:intron | 40.0% |
| ! | TAAAGTGCCCAAAAAAGACG+GGG | - | chr1.2:65716955-65716974 | None:intergenic | 40.0% |
| ! | TCTGGCCTATAGCTTTTCAT+AGG | + | chr1.2:65715292-65715311 | MS.gene20784:intron | 40.0% |
| !! | GATCTTTGGCTCTATAGTTG+TGG | - | chr1.2:65717376-65717395 | None:intergenic | 40.0% |
| !! | GTAGTACTGATGAATAGGGT+TGG | + | chr1.2:65715200-65715219 | MS.gene20784:intron | 40.0% |
| !! | TAACCAGTTATTTCTGCTGC+CGG | + | chr1.2:65715144-65715163 | MS.gene20784:intron | 40.0% |
| !!! | AAAGTTGTCCCCGTCTTTTT+TGG | + | chr1.2:65716944-65716963 | MS.gene20784:intron | 40.0% |
| !!! | AAGTTGTCCCCGTCTTTTTT+GGG | + | chr1.2:65716945-65716964 | MS.gene20784:intron | 40.0% |
| !!! | ATAGGCCTATTGTTTTGACC+TGG | + | chr1.2:65715310-65715329 | MS.gene20784:intron | 40.0% |
| !!! | TTTTTTTCGTAGGTCAGGCT+CGG | - | chr1.2:65715259-65715278 | None:intergenic | 40.0% |
| AAAAGCTATAGGCCAGACTC+AGG | - | chr1.2:65715289-65715308 | None:intergenic | 45.0% | |
| AATAGGGTTGGGAATATGCC+AGG | + | chr1.2:65715212-65715231 | MS.gene20784:intron | 45.0% | |
| AATCCGGCAGCAGAAATAAC+TGG | - | chr1.2:65715150-65715169 | None:intergenic | 45.0% | |
| ACTATTGTCAGCAGGACGAA+TGG | - | chr1.2:65716130-65716149 | None:intergenic | 45.0% | |
| AGGCCTGTAAATAGGCTTTC+AGG | - | chr1.2:65715363-65715382 | None:intergenic | 45.0% | |
| AGTAGTGTGGAGCTTCACAA+TGG | - | chr1.2:65713905-65713924 | None:intergenic | 45.0% | |
| CTATTGTCAGCAGGACGAAT+GGG | - | chr1.2:65716129-65716148 | None:intergenic | 45.0% | |
| GCTTAAACAAGCCAGATCGT+AGG | + | chr1.2:65715869-65715888 | MS.gene20784:intron | 45.0% | |
| GGACGAACATCCATGATCTT+TGG | - | chr1.2:65717390-65717409 | None:intergenic | 45.0% | |
| GGTTAAAAGTGAGAGCTTGC+CGG | + | chr1.2:65714436-65714455 | MS.gene20784:intron | 45.0% | |
| GTGAAGCTCCACACTACTTA+TGG | + | chr1.2:65713907-65713926 | MS.gene20784:CDS | 45.0% | |
| TCAGGCCAGGTCAAAACAAT+AGG | - | chr1.2:65715318-65715337 | None:intergenic | 45.0% | |
| TCATCAGTAGGGTTGGGAAT+AGG | - | chr1.2:65715914-65715933 | None:intergenic | 45.0% | |
| TGCCCACATGCCTAACAATT+TGG | + | chr1.2:65717002-65717021 | MS.gene20784:intron | 45.0% | |
| TGCTGAGGTGAGAATTCCAA+TGG | - | chr1.2:65717326-65717345 | None:intergenic | 45.0% | |
| TTACGTTAGCATAGCTCGGT+TGG | + | chr1.2:65716804-65716823 | MS.gene20784:intron | 45.0% | |
| ! | CAATCTAGTGAAGGAGTACG+TGG | - | chr1.2:65717528-65717547 | None:intergenic | 45.0% |
| ! | CCACGCATTTTGCAAGTGAT+GGG | - | chr1.2:65714501-65714520 | None:intergenic | 45.0% |
| ! | GACATTCGTTTGTTGAGGAG+CGG | - | chr1.2:65714988-65715007 | None:intergenic | 45.0% |
| !! | AGAGAAATGATGGGTGATGG+AGG | + | chr1.2:65717768-65717787 | MS.gene20784:CDS | 45.0% |
| !! | GAGAGAGAAATGATGGGTGA+TGG | + | chr1.2:65717765-65717784 | MS.gene20784:CDS | 45.0% |
| !! | GGGTTTGTGTGATTTTCAGG+TGG | + | chr1.2:65717250-65717269 | MS.gene20784:intron | 45.0% |
| !!! | TTTTTTCGTAGGTCAGGCTC+GGG | - | chr1.2:65715258-65715277 | None:intergenic | 45.0% |
| !! | AAATATATATTAATTATCAA+TGG | + | chr1.2:65716363-65716382 | MS.gene20784:intron | 5.0% |
| AACAGCTTCCCCGTAGTATC+CGG | - | chr1.2:65714458-65714477 | None:intergenic | 50.0% | |
| AGGTCAGGCCAGACTTTGAT+AGG | + | chr1.2:65715232-65715251 | MS.gene20784:intron | 50.0% | |
| ATGATAGCTAGCCACTTGCC+AGG | + | chr1.2:65717276-65717295 | MS.gene20784:CDS | 50.0% | |
| CATAAACAGGCCGGCCTATT+AGG | + | chr1.2:65715742-65715761 | MS.gene20784:intron | 50.0% | |
| CATGCCATACCCACATCCTA+CGG | - | chr1.2:65714163-65714182 | None:intergenic | 50.0% | |
| CCCATCACTTGCAAAATGCG+TGG | + | chr1.2:65714498-65714517 | MS.gene20784:intron | 50.0% | |
| CGTCCTCCTAAGCGTAAATG+TGG | + | chr1.2:65717405-65717424 | MS.gene20784:CDS | 50.0% | |
| GAGAGTTGACCGTAGGATGT+GGG | + | chr1.2:65714151-65714170 | MS.gene20784:intron | 50.0% | |
| GCCTACGAAACCTAATAGGC+CGG | - | chr1.2:65715755-65715774 | None:intergenic | 50.0% | |
| TAGCCACTTGCCAGGAAGAA+CGG | + | chr1.2:65717284-65717303 | MS.gene20784:CDS | 50.0% | |
| TATCAAAGTCTGGCCTGACC+TGG | - | chr1.2:65715233-65715252 | None:intergenic | 50.0% | |
| TGAGAGCTTGCCGGATACTA+CGG | + | chr1.2:65714445-65714464 | MS.gene20784:intron | 50.0% | |
| TGAGAGTTGACCGTAGGATG+TGG | + | chr1.2:65714150-65714169 | MS.gene20784:intron | 50.0% | |
| TGTTTAAGCCTGGTCTGACC+TGG | - | chr1.2:65715858-65715877 | None:intergenic | 50.0% | |
| TTGACCGTAGGATGTGGGTA+TGG | + | chr1.2:65714156-65714175 | MS.gene20784:intron | 50.0% | |
| ! | GCCACGCATTTTGCAAGTGA+TGG | - | chr1.2:65714502-65714521 | None:intergenic | 50.0% |
| ! | TATTAGTGACCGGAGGGTGT+AGG | + | chr1.2:65715568-65715587 | MS.gene20784:intron | 50.0% |
| ! | TGGCAAGTGGCTAGCTATCA+TGG | - | chr1.2:65717277-65717296 | None:intergenic | 50.0% |
| !! | CGATCTGGCTTGTTTAAGCC+TGG | - | chr1.2:65715868-65715887 | None:intergenic | 50.0% |
| !! | GCTTTAAAGCCTACACCCTC+CGG | - | chr1.2:65715580-65715599 | None:intergenic | 50.0% |
| AGAGCTTGCCGGATACTACG+GGG | + | chr1.2:65714447-65714466 | MS.gene20784:intron | 55.0% | |
| CGTAGGATGTGGGTATGGCA+TGG | + | chr1.2:65714161-65714180 | MS.gene20784:intron | 55.0% | |
| GAGAGCTTGCCGGATACTAC+GGG | + | chr1.2:65714446-65714465 | MS.gene20784:intron | 55.0% | |
| GCCGGCCTATTAGGTTTCGT+AGG | + | chr1.2:65715751-65715770 | MS.gene20784:intron | 55.0% | |
| GGTTGGGAATATGCCAGGTC+AGG | + | chr1.2:65715217-65715236 | MS.gene20784:intron | 55.0% | |
| TAAACAGGCCAGGTCAGACC+AGG | + | chr1.2:65715847-65715866 | MS.gene20784:intron | 55.0% | |
| TGTCCGTTCTTCCTGGCAAG+TGG | - | chr1.2:65717290-65717309 | None:intergenic | 55.0% | |
| ! | GTTTGTTGAGGAGCGGATCC+AGG | - | chr1.2:65714981-65715000 | None:intergenic | 55.0% |
| AATAGGCCAGACCGGCCTAC+AGG | - | chr1.2:65715897-65715916 | None:intergenic | 60.0% | |
| ATAGGCCAGACCGGCCTACA+GGG | - | chr1.2:65715896-65715915 | None:intergenic | 60.0% | |
| GGCTCGGGCCTATCAAAGTC+TGG | - | chr1.2:65715243-65715262 | None:intergenic | 60.0% | |
| GGGTTGGGAATAGGCCAGAC+CGG | - | chr1.2:65715905-65715924 | None:intergenic | 60.0% | |
| GATCGTAGGCCCCTGTAGGC+CGG | + | chr1.2:65715883-65715902 | MS.gene20784:intron | 65.0% | |
| GCCAGATCGTAGGCCCCTGT+AGG | + | chr1.2:65715879-65715898 | MS.gene20784:intron | 65.0% | |
| GCCTACAGGGGCCTACGATC+TGG | - | chr1.2:65715883-65715902 | None:intergenic | 65.0% | |
| TAGGCCAGACCGGCCTACAG+GGG | - | chr1.2:65715895-65715914 | None:intergenic | 65.0% | |
| TAGGCCCCTGTAGGCCGGTC+TGG | + | chr1.2:65715888-65715907 | MS.gene20784:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65713806 | 65717828 | 65713806 | ID=MS.gene20784 |
| chr1.2 | mRNA | 65713806 | 65717828 | 65713806 | ID=MS.gene20784.t1;Parent=MS.gene20784 |
| chr1.2 | exon | 65713806 | 65713935 | 65713806 | ID=MS.gene20784.t1.exon1;Parent=MS.gene20784.t1 |
| chr1.2 | CDS | 65713806 | 65713935 | 65713806 | ID=cds.MS.gene20784.t1;Parent=MS.gene20784.t1 |
| chr1.2 | exon | 65717269 | 65717828 | 65717269 | ID=MS.gene20784.t1.exon2;Parent=MS.gene20784.t1 |
| chr1.2 | CDS | 65717269 | 65717828 | 65717269 | ID=cds.MS.gene20784.t1;Parent=MS.gene20784.t1 |
| Gene Sequence |
| Protein sequence |
