Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21115.t1 | XP_013469122.1 | 86.5 | 281 | 29 | 3 | 1 | 279 | 1 | 274 | 1.30E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21115.t1 | A0A072VYK4 | 86.5 | 281 | 29 | 3 | 1 | 279 | 1 | 274 | 9.3e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene21115 | 0.813282 | 2.77E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene21115 | 0.82591 | 3.62E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene21115 | 0.811758 | 5.97E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene21115 | 0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene050577 | MS.gene21115 | 0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene21115 | 0.828831 | 7.22E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene21115 | 0.816383 | 5.69E-52 | -1.69E-46 |
| MS.gene05081 | MS.gene21115 | 0.809872 | 1.53E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene21115 | 0.817689 | 2.90E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene21115 | 0.826773 | 2.26E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene21115 | 0.819589 | 1.07E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene21115 | 0.80997 | 1.45E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene21115 | -0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene21115 | 0.80795 | 3.93E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene21115 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene21115 | 0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene21115 | 0.810158 | 1.32E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene21115 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene21115 | 0.826369 | 2.82E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene21115 | 0.821002 | 5.09E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene21115 | 0.843841 | 1.09E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene21115 | 0.813972 | 1.95E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene21115 | 0.804658 | 1.94E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene21115 | 0.826425 | 2.73E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene21115 | 0.814373 | 1.59E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene21115 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene21115 | 0.831724 | 1.42E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene21115 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene21115 | -0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene21115 | 0.809405 | 1.92E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene21115 | 0.824586 | 7.45E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21115.t1 | MTR_1g085550 | 86.477 | 281 | 29 | 3 | 1 | 279 | 1 | 274 | 5.21e-173 | 479 |
| MS.gene21115.t1 | MTR_8g094800 | 32.377 | 244 | 133 | 7 | 19 | 261 | 37 | 249 | 1.02e-20 | 92.0 |
| MS.gene21115.t1 | MTR_8g094800 | 28.743 | 167 | 97 | 4 | 98 | 262 | 350 | 496 | 1.44e-14 | 73.9 |
| MS.gene21115.t1 | MTR_8g094800 | 32.377 | 244 | 133 | 7 | 19 | 261 | 37 | 249 | 1.05e-20 | 92.0 |
| MS.gene21115.t1 | MTR_8g094800 | 28.743 | 167 | 97 | 4 | 98 | 262 | 350 | 496 | 2.63e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21115.t1 | AT4G01650 | 59.184 | 196 | 74 | 3 | 83 | 274 | 16 | 209 | 3.41e-78 | 236 |
| MS.gene21115.t1 | AT4G01650 | 59.184 | 196 | 74 | 3 | 83 | 274 | 93 | 286 | 4.10e-77 | 236 |
| MS.gene21115.t1 | AT4G01650 | 64.122 | 131 | 43 | 2 | 83 | 211 | 93 | 221 | 4.94e-55 | 177 |
| MS.gene21115.t1 | AT5G08720 | 38.415 | 164 | 85 | 4 | 105 | 267 | 97 | 245 | 9.87e-22 | 95.1 |
| MS.gene21115.t1 | AT5G08720 | 27.717 | 184 | 111 | 4 | 98 | 279 | 328 | 491 | 2.60e-13 | 70.1 |
Find 0 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTCATTTTTTATTAAT+CGG | - | 10913:38817-38836 | MS.gene21115:intron | 10.0% |
| !! | AAATTTGCAATATAAACAAA+AGG | - | 10913:39439-39458 | MS.gene21115:intron | 15.0% |
| !! | ATAAGAAGAAAAAAAAACAT+AGG | - | 10913:39700-39719 | MS.gene21115:intron | 15.0% |
| !! | TAAAATTTACATAAACTTAG+TGG | - | 10913:40885-40904 | MS.gene21115:intron | 15.0% |
| !! | TCGAAAACAAAATAAAAATA+AGG | + | 10913:40694-40713 | None:intergenic | 15.0% |
| !! | TTGTAATTAAAAGTAAAAAC+AGG | - | 10913:40812-40831 | MS.gene21115:intron | 15.0% |
| !! | TTGTTTATATTGCAAATTTA+GGG | + | 10913:39438-39457 | None:intergenic | 15.0% |
| !! | TTTGTTTATATTGCAAATTT+AGG | + | 10913:39439-39458 | None:intergenic | 15.0% |
| !!! | ACTTGATTTTATTAAATTCA+CGG | - | 10913:39160-39179 | MS.gene21115:intron | 15.0% |
| !!! | ATTGTTATTTTCATCAAATA+CGG | - | 10913:39551-39570 | MS.gene21115:intron | 15.0% |
| !!! | ATTTTCTTGAAAAGAAAATT+TGG | - | 10913:40282-40301 | MS.gene21115:intron | 15.0% |
| !!! | CTTTTCATTTTTTATTAATC+GGG | - | 10913:38818-38837 | MS.gene21115:intron | 15.0% |
| !!! | TTATGTAAATTTTAGAAACT+AGG | + | 10913:40879-40898 | None:intergenic | 15.0% |
| !! | AATACACATAATCTCTAATA+CGG | + | 10913:39004-39023 | None:intergenic | 20.0% |
| !! | AATTGCACATATTGAAAATT+GGG | + | 10913:41093-41112 | None:intergenic | 20.0% |
| !! | ATTCTAGATATAAAAGTAGT+AGG | - | 10913:39185-39204 | MS.gene21115:CDS | 20.0% |
| !! | GGTTAAAATTAAACTGTATA+TGG | - | 10913:40086-40105 | MS.gene21115:intron | 20.0% |
| !! | TGGTGAAAATAATGAAAAAT+TGG | + | 10913:40739-40758 | None:intergenic | 20.0% |
| !!! | AAACTGTATAGTTCTAAATA+GGG | - | 10913:39281-39300 | MS.gene21115:CDS | 20.0% |
| !!! | AAATAAGGTATCATTTAAAG+AGG | + | 10913:40679-40698 | None:intergenic | 20.0% |
| !!! | AAATGCTGTATTTTATAGTT+TGG | - | 10913:39379-39398 | MS.gene21115:intron | 20.0% |
| !!! | ACAATTTTTTAAACCAAACA+TGG | - | 10913:40852-40871 | MS.gene21115:intron | 20.0% |
| !!! | AGGATATGATTTTGAATATT+AGG | - | 10913:40065-40084 | MS.gene21115:intron | 20.0% |
| !!! | TAGGAATTACTCTAATTTTT+TGG | + | 10913:38953-38972 | None:intergenic | 20.0% |
| !!! | TATGTTTTAGCATTTAAAAC+CGG | + | 10913:39590-39609 | None:intergenic | 20.0% |
| ! | AAAAACAGGAGTTGAAAATT+AGG | - | 10913:40826-40845 | MS.gene21115:intron | 25.0% |
| ! | AATAATACAACCTAGAAAGT+AGG | + | 10913:38972-38991 | None:intergenic | 25.0% |
| ! | AGATATAAAAGTAGTAGGAA+GGG | - | 10913:39190-39209 | MS.gene21115:CDS | 25.0% |
| ! | ATAATCTCTAATACGGATAA+TGG | + | 10913:38997-39016 | None:intergenic | 25.0% |
| ! | ATATCTTGACTGATTATGAA+AGG | - | 10913:38603-38622 | MS.gene21115:intron | 25.0% |
| ! | ATATTGTATTAGTGTTGTGT+TGG | - | 10913:38784-38803 | MS.gene21115:intron | 25.0% |
| ! | ATTGCACATATTGAAAATTG+GGG | + | 10913:41092-41111 | None:intergenic | 25.0% |
| ! | CAATTGCACATATTGAAAAT+TGG | + | 10913:41094-41113 | None:intergenic | 25.0% |
| ! | GTATTAGAGATTATGTGTAT+TGG | - | 10913:39003-39022 | MS.gene21115:intron | 25.0% |
| ! | TAACTATACCTTTAAACTGT+GGG | - | 10913:39935-39954 | MS.gene21115:intron | 25.0% |
| ! | TAACTTGGAGAAAGTAAATT+AGG | + | 10913:40176-40195 | None:intergenic | 25.0% |
| ! | TAATCTCTAATACGGATAAT+GGG | + | 10913:38996-39015 | None:intergenic | 25.0% |
| ! | TAGATATAAAAGTAGTAGGA+AGG | - | 10913:39189-39208 | MS.gene21115:CDS | 25.0% |
| ! | TATGATTTCCATATATGTCA+TGG | - | 10913:39870-39889 | MS.gene21115:intron | 25.0% |
| ! | TATTGTATTAGTGTTGTGTT+GGG | - | 10913:38785-38804 | MS.gene21115:intron | 25.0% |
| ! | TCAGAAGAATTCTAATAAGA+GGG | + | 10913:40533-40552 | None:intergenic | 25.0% |
| ! | TTAAAATAAAAAGCCACTCA+TGG | + | 10913:39788-39807 | None:intergenic | 25.0% |
| ! | TTCAGAAGAATTCTAATAAG+AGG | + | 10913:40534-40553 | None:intergenic | 25.0% |
| !! | AAGTGTTACTGTTAAAACAT+AGG | - | 10913:39759-39778 | MS.gene21115:intron | 25.0% |
| !! | CATTGAATTTCTAAAGGTTA+AGG | + | 10913:40202-40221 | None:intergenic | 25.0% |
| !! | CTTAACCTTTAGAAATTCAA+TGG | - | 10913:40200-40219 | MS.gene21115:intron | 25.0% |
| !! | GTTTTCAATTCAATGTAGTT+TGG | - | 10913:39494-39513 | MS.gene21115:intron | 25.0% |
| !! | TTAGAACTATACAGTTTGTT+TGG | + | 10913:39278-39297 | None:intergenic | 25.0% |
| !! | TTTTTGGATCAATTTACTGA+GGG | + | 10913:38654-38673 | None:intergenic | 25.0% |
| !!! | AGATTGTTTTGAGAAAGAAT+TGG | - | 10913:40396-40415 | MS.gene21115:intron | 25.0% |
| !!! | ATTACATTTTGAAACCATGT+AGG | - | 10913:41139-41158 | MS.gene21115:CDS | 25.0% |
| !!! | CAAACTGTATAGTTCTAAAT+AGG | - | 10913:39280-39299 | MS.gene21115:CDS | 25.0% |
| !!! | TGTTTTAACAGTAACACTTT+AGG | + | 10913:39758-39777 | None:intergenic | 25.0% |
| !!! | TTCATTTTTTATTAATCGGG+CGG | - | 10913:38821-38840 | MS.gene21115:intron | 25.0% |
| !!! | TTGGATTTTTAGAACTGAAT+AGG | - | 10913:40631-40650 | MS.gene21115:intron | 25.0% |
| AAAAGAACCTTAAATCCGTA+AGG | - | 10913:41358-41377 | MS.gene21115:CDS | 30.0% | |
| AAAGAACCTTAAATCCGTAA+GGG | - | 10913:41359-41378 | MS.gene21115:CDS | 30.0% | |
| AATATCAACATTGTTGAGCT+AGG | + | 10913:38872-38891 | None:intergenic | 30.0% | |
| ATAGACTTCAAGATGATTGA+AGG | - | 10913:40448-40467 | MS.gene21115:intron | 30.0% | |
| ATAGGTCAACATGATTATGT+TGG | - | 10913:39718-39737 | MS.gene21115:intron | 30.0% | |
| ATATCAACATTGTTGAGCTA+GGG | + | 10913:38871-38890 | None:intergenic | 30.0% | |
| ATCAGTCAAGATATTCCAAA+TGG | + | 10913:38597-38616 | None:intergenic | 30.0% | |
| ATGATTATATGCCATGAAGT+AGG | + | 10913:39824-39843 | None:intergenic | 30.0% | |
| ATGTTTAACGAACATGACTT+GGG | + | 10913:38353-38372 | None:intergenic | 30.0% | |
| CAGAAGAATTCTAATAAGAG+GGG | + | 10913:40532-40551 | None:intergenic | 30.0% | |
| CATAACTTCCATGACATATA+TGG | + | 10913:39881-39900 | None:intergenic | 30.0% | |
| CTCAGTAAATTGATCCAAAA+AGG | - | 10913:38653-38672 | MS.gene21115:intron | 30.0% | |
| GATATAAAAGTAGTAGGAAG+GGG | - | 10913:39191-39210 | MS.gene21115:CDS | 30.0% | |
| GGGTTAAAATTTGATGCTAA+AGG | - | 10913:40367-40386 | MS.gene21115:intron | 30.0% | |
| GTAACTATACCTTTAAACTG+TGG | - | 10913:39934-39953 | MS.gene21115:intron | 30.0% | |
| GTTCCATTATCTTAACAGAT+TGG | - | 10913:40325-40344 | MS.gene21115:intron | 30.0% | |
| TAAAGGTTAAGGTTGTAACT+TGG | + | 10913:40191-40210 | None:intergenic | 30.0% | |
| TAGACTTCAAGATGATTGAA+GGG | - | 10913:40449-40468 | MS.gene21115:intron | 30.0% | |
| TAGAGTAATTCCTACTTTCT+AGG | - | 10913:38959-38978 | MS.gene21115:intron | 30.0% | |
| TCAAACCAAATTTACGAACA+GGG | + | 10913:40259-40278 | None:intergenic | 30.0% | |
| TCTCCAATCTGTTAAGATAA+TGG | + | 10913:40331-40350 | None:intergenic | 30.0% | |
| TTCAAACCAAATTTACGAAC+AGG | + | 10913:40260-40279 | None:intergenic | 30.0% | |
| TTCTTATCTACTCTAGTATG+AGG | + | 10913:39687-39706 | None:intergenic | 30.0% | |
| ! | AACAAAAGGCTTATTGATTG+AGG | - | 10913:39453-39472 | MS.gene21115:intron | 30.0% |
| ! | ACAAAAGGCTTATTGATTGA+GGG | - | 10913:39454-39473 | MS.gene21115:intron | 30.0% |
| ! | CTTTTTGGATCAATTTACTG+AGG | + | 10913:38655-38674 | None:intergenic | 30.0% |
| ! | TATATTGCAAATTTAGGGCA+AGG | + | 10913:39433-39452 | None:intergenic | 30.0% |
| ! | TTTTTCCCTGTTCGTAAATT+TGG | - | 10913:40251-40270 | MS.gene21115:intron | 30.0% |
| !! | CGCAAGTATTTTTCAAATGT+TGG | - | 10913:40612-40631 | MS.gene21115:intron | 30.0% |
| !! | TTTTGGTAACCAACTACAAA+TGG | - | 10913:40923-40942 | MS.gene21115:intron | 30.0% |
| !!! | TAGCTTTTGACTTGACAAAA+AGG | - | 10913:41021-41040 | MS.gene21115:CDS | 30.0% |
| !!! | TCATTTTTTATTAATCGGGC+GGG | - | 10913:38822-38841 | MS.gene21115:intron | 30.0% |
| !!! | TTGGTTTTGCTTCTTTGTAA+TGG | - | 10913:39398-39417 | MS.gene21115:intron | 30.0% |
| AAATGGAGTGCATCTTATCT+TGG | - | 10913:40940-40959 | MS.gene21115:intron | 35.0% | |
| AAGAACCTTAAATCCGTAAG+GGG | - | 10913:41360-41379 | MS.gene21115:CDS | 35.0% | |
| ACATAAAATGACCTTGTTGG+TGG | + | 10913:39229-39248 | None:intergenic | 35.0% | |
| AGACTTCAAGATGATTGAAG+GGG | - | 10913:40450-40469 | MS.gene21115:intron | 35.0% | |
| ATCATAATCACAATCCCACT+TGG | + | 10913:40993-41012 | None:intergenic | 35.0% | |
| CACATATTGAAAATTGGGGA+AGG | + | 10913:41088-41107 | None:intergenic | 35.0% | |
| CTTGACTGATTATGAAAGGT+TGG | - | 10913:38607-38626 | MS.gene21115:intron | 35.0% | |
| CTTGCAGGTATAATGCAATT+GGG | - | 10913:38694-38713 | MS.gene21115:intron | 35.0% | |
| GATGTTTAACGAACATGACT+TGG | + | 10913:38354-38373 | None:intergenic | 35.0% | |
| GTTTAGTTGCATGCTTGATT+TGG | - | 10913:39070-39089 | MS.gene21115:intron | 35.0% | |
| TAAAGTCCCAGAATCATCAT+CGG | + | 10913:38435-38454 | None:intergenic | 35.0% | |
| TAAGTTAGACACATTCACTC+AGG | - | 10913:38894-38913 | MS.gene21115:intron | 35.0% | |
| TCGACATAAAATGACCTTGT+TGG | + | 10913:39232-39251 | None:intergenic | 35.0% | |
| TCTTGCAGGTATAATGCAAT+TGG | - | 10913:38693-38712 | MS.gene21115:intron | 35.0% | |
| TGGAAAGTCTGCTATTATTC+AGG | - | 10913:40960-40979 | MS.gene21115:intron | 35.0% | |
| TTAGAAACTAGGACCATGTT+TGG | + | 10913:40868-40887 | None:intergenic | 35.0% | |
| TTATCTACTCTAGTATGAGG+TGG | + | 10913:39684-39703 | None:intergenic | 35.0% | |
| TTGCAGGTATAATGCAATTG+GGG | - | 10913:38695-38714 | MS.gene21115:intron | 35.0% | |
| ! | AAATGGTCTATTTTGCAGGT+AGG | - | 10913:40493-40512 | MS.gene21115:intron | 35.0% |
| ! | AAATTTAGGGCAAGGTCATA+AGG | + | 10913:39425-39444 | None:intergenic | 35.0% |
| ! | AGGAAAATGGTCTATTTTGC+AGG | - | 10913:40489-40508 | MS.gene21115:intron | 35.0% |
| ! | ATTCAGGTTATTGACCAAGT+GGG | - | 10913:40976-40995 | MS.gene21115:CDS | 35.0% |
| ! | ATTTTCACCATTTCCTATGC+TGG | - | 10913:40749-40768 | MS.gene21115:intron | 35.0% |
| ! | CAAAAGGCTTATTGATTGAG+GGG | - | 10913:39455-39474 | MS.gene21115:intron | 35.0% |
| ! | CCTTTAGAAATTCAATGGCA+CGG | - | 10913:40205-40224 | MS.gene21115:intron | 35.0% |
| ! | TAGAGAAGTGCATAAAACTC+TGG | + | 10913:40589-40608 | None:intergenic | 35.0% |
| ! | TATTCAGGTTATTGACCAAG+TGG | - | 10913:40975-40994 | MS.gene21115:CDS | 35.0% |
| ! | TTCAGCTCTTTGAAGGAAAA+TGG | - | 10913:40476-40495 | MS.gene21115:intron | 35.0% |
| !! | TGATGATTCTGGGACTTTAT+TGG | - | 10913:38436-38455 | MS.gene21115:intron | 35.0% |
| !! | TTTTTGGTCTGTAAACGAAG+TGG | + | 10913:38937-38956 | None:intergenic | 35.0% |
| !!! | GTTTTTTGTGACAGATAGAC+AGG | - | 10913:40045-40064 | MS.gene21115:intron | 35.0% |
| ACGCTTCACTTGATTCCATT+TGG | - | 10913:38579-38598 | MS.gene21115:intron | 40.0% | |
| ACTCGTTGAATACTCCTACA+TGG | + | 10913:41156-41175 | None:intergenic | 40.0% | |
| AGAGAAGAAAAGGGAGGAAA+TGG | + | 10913:38303-38322 | None:intergenic | 40.0% | |
| AGATGCACTCCATTTGTAGT+TGG | + | 10913:40935-40954 | None:intergenic | 40.0% | |
| AGTTATGTATGCATCAGTCG+TGG | - | 10913:39894-39913 | MS.gene21115:intron | 40.0% | |
| AGTTGAAGATTCAGAGTCGT+TGG | - | 10913:38475-38494 | MS.gene21115:intron | 40.0% | |
| ATTCACGCAGAATTGAGTGT+AGG | - | 10913:38546-38565 | MS.gene21115:intron | 40.0% | |
| CATCATAGCATAGCCAAGTA+TGG | - | 10913:40117-40136 | MS.gene21115:intron | 40.0% | |
| CTGCAAAACCATCATTGTCT+AGG | + | 10913:41205-41224 | None:intergenic | 40.0% | |
| GCTAACTTCCTAGACAATGA+TGG | - | 10913:41194-41213 | MS.gene21115:CDS | 40.0% | |
| GTCGTGTTAATTTCACGAAC+CGG | + | 10913:41258-41277 | None:intergenic | 40.0% | |
| GTTATGTATGCATCAGTCGT+GGG | - | 10913:39895-39914 | MS.gene21115:intron | 40.0% | |
| TCAGTACTCCCACAGTTTAA+AGG | + | 10913:39946-39965 | None:intergenic | 40.0% | |
| TCTTGGTGAATGAAATGTCC+AGG | - | 10913:39966-39985 | MS.gene21115:intron | 40.0% | |
| TGCAAGAGTCGAGCAAAATT+GGG | + | 10913:38680-38699 | None:intergenic | 40.0% | |
| TTAGATGCAGCCACTGTATT+AGG | + | 10913:39312-39331 | None:intergenic | 40.0% | |
| TTGATGTTAAGCCGAAGATG+TGG | - | 10913:41292-41311 | MS.gene21115:CDS | 40.0% | |
| ! | AGCATTTAAAACCGGTCCAA+CGG | + | 10913:39582-39601 | None:intergenic | 40.0% |
| ! | AGTTTGCATGGTTTTCATGC+TGG | + | 10913:40558-40577 | None:intergenic | 40.0% |
| ! | ATGTGAAGCATCCTACTTCA+TGG | - | 10913:39810-39829 | MS.gene21115:intron | 40.0% |
| ! | CCGTGCCATTGAATTTCTAA+AGG | + | 10913:40208-40227 | None:intergenic | 40.0% |
| ! | GAGCAAAATTGGGACCTTTT+TGG | + | 10913:38670-38689 | None:intergenic | 40.0% |
| ! | GTGAGGGTGTGAAATGAAAA+GGG | + | 10913:38331-38350 | None:intergenic | 40.0% |
| ! | TGAGGGTGTGAAATGAAAAG+GGG | + | 10913:38330-38349 | None:intergenic | 40.0% |
| !! | ATCATCATCGGTGTCGTTTA+AGG | + | 10913:38423-38442 | None:intergenic | 40.0% |
| !! | CATGCTTGATTTGGCAAGTT+TGG | - | 10913:39079-39098 | MS.gene21115:intron | 40.0% |
| !! | GGTAACTTCTAGTTTGCTCA+GGG | + | 10913:39257-39276 | None:intergenic | 40.0% |
| !! | TGGTAACTTCTAGTTTGCTC+AGG | + | 10913:39258-39277 | None:intergenic | 40.0% |
| !!! | GGATTCTAGCTAGCGTTTTT+TGG | - | 10913:40906-40925 | MS.gene21115:intron | 40.0% |
| AAAACATAGGCGTCCATGAG+TGG | - | 10913:39772-39791 | MS.gene21115:intron | 45.0% | |
| AAAAGGGAGGAAATGGAAGC+CGG | + | 10913:38296-38315 | None:intergenic | 45.0% | |
| AACGACACCGATGATGATTC+TGG | - | 10913:38425-38444 | MS.gene21115:CDS | 45.0% | |
| AATTTACTGAGGGCAAGACC+AGG | + | 10913:38644-38663 | None:intergenic | 45.0% | |
| ACAGATTGGAGAGCAGAACT+TGG | - | 10913:40339-40358 | MS.gene21115:intron | 45.0% | |
| ACCAACTGATGTGTATTGCC+TGG | + | 10913:39987-40006 | None:intergenic | 45.0% | |
| ACGACACCGATGATGATTCT+GGG | - | 10913:38426-38445 | MS.gene21115:CDS | 45.0% | |
| ACTCTAGTATGAGGTGGTTG+TGG | + | 10913:39678-39697 | None:intergenic | 45.0% | |
| AGGAAAGTTTGCGTGGAAAC+TGG | + | 10913:38254-38273 | None:intergenic | 45.0% | |
| AGGGTGTGAAATGAAAAGGG+GGG | + | 10913:38328-38347 | None:intergenic | 45.0% | |
| ATCAAATACGGTCAGTCCGT+TGG | - | 10913:39563-39582 | MS.gene21115:intron | 45.0% | |
| ATGCAGCCACTGTATTAGGA+AGG | + | 10913:39308-39327 | None:intergenic | 45.0% | |
| ATGTCACGCTTCATACCAGA+TGG | + | 10913:40430-40449 | None:intergenic | 45.0% | |
| CTGCAAGAGTCGAGCAAAAT+TGG | + | 10913:38681-38700 | None:intergenic | 45.0% | |
| CTTCACCCCTTACGGATTTA+AGG | + | 10913:41368-41387 | None:intergenic | 45.0% | |
| GAATTGGAGACTCTTCCATC+TGG | - | 10913:40412-40431 | MS.gene21115:intron | 45.0% | |
| GAGAGCAGAACTTGGCATTT+GGG | - | 10913:40347-40366 | MS.gene21115:intron | 45.0% | |
| TAAACGAAGTGGCAAGCACA+AGG | + | 10913:38926-38945 | None:intergenic | 45.0% | |
| TAGGGACCTTCCTAATACAG+TGG | - | 10913:39299-39318 | MS.gene21115:CDS | 45.0% | |
| TCACGAGGAACTGTGCTATA+AGG | - | 10913:39040-39059 | MS.gene21115:intron | 45.0% | |
| TCCAAGACCAGCATAGGAAA+TGG | + | 10913:40759-40778 | None:intergenic | 45.0% | |
| TCCAGGCAATACACATCAGT+TGG | - | 10913:39983-40002 | MS.gene21115:intron | 45.0% | |
| TTTCAGAGCTTCACCCCTTA+CGG | + | 10913:41376-41395 | None:intergenic | 45.0% | |
| TTTCAGCGATGGAAGTTGTG+AGG | - | 10913:41227-41246 | MS.gene21115:CDS | 45.0% | |
| ! | AACGAACATGACTTGGGTGA+GGG | + | 10913:38347-38366 | None:intergenic | 45.0% |
| ! | AATGACCTTGTTGGTGGATG+AGG | + | 10913:39223-39242 | None:intergenic | 45.0% |
| ! | ACCATTTCCTATGCTGGTCT+TGG | - | 10913:40755-40774 | MS.gene21115:intron | 45.0% |
| ! | AGAGTCGTTGGTTGAAGATG+GGG | - | 10913:38487-38506 | MS.gene21115:intron | 45.0% |
| ! | AGGTTGGCTGATTTCATTCC+TGG | - | 10913:38623-38642 | MS.gene21115:intron | 45.0% |
| ! | CAATTTTGCTCGACTCTTGC+AGG | - | 10913:38679-38698 | MS.gene21115:intron | 45.0% |
| ! | CAGAGTCGTTGGTTGAAGAT+GGG | - | 10913:38486-38505 | MS.gene21115:intron | 45.0% |
| ! | CTGGGACTTTATTGGTGACA+GGG | - | 10913:38444-38463 | MS.gene21115:intron | 45.0% |
| ! | GAGGGTGTGAAATGAAAAGG+GGG | + | 10913:38329-38348 | None:intergenic | 45.0% |
| ! | GGGGATTTTCAGCTCTTTGA+AGG | - | 10913:40469-40488 | MS.gene21115:intron | 45.0% |
| ! | GGTGAGGGTGTGAAATGAAA+AGG | + | 10913:38332-38351 | None:intergenic | 45.0% |
| ! | GTGTTTTCCAAGACCAGCAT+AGG | + | 10913:40765-40784 | None:intergenic | 45.0% |
| ! | GTTTTGCAGACTTTCAGCGA+TGG | - | 10913:41216-41235 | MS.gene21115:CDS | 45.0% |
| ! | TAACGAACATGACTTGGGTG+AGG | + | 10913:38348-38367 | None:intergenic | 45.0% |
| ! | TAAGGTGGTTGGGTTGTGTT+TGG | + | 10913:38405-38424 | None:intergenic | 45.0% |
| ! | TCAGAGTCGTTGGTTGAAGA+TGG | - | 10913:38485-38504 | MS.gene21115:intron | 45.0% |
| ! | TCTGGGACTTTATTGGTGAC+AGG | - | 10913:38443-38462 | MS.gene21115:intron | 45.0% |
| ! | TGGGACTTTATTGGTGACAG+GGG | - | 10913:38445-38464 | MS.gene21115:intron | 45.0% |
| ! | TTGGAAGCGCGATACAAAGA+AGG | + | 10913:38386-38405 | None:intergenic | 45.0% |
| !! | AACTGTGGGAGTACTGATCT+TGG | - | 10913:39949-39968 | MS.gene21115:intron | 45.0% |
| !! | ATCATCGGTGTCGTTTAAGG+TGG | + | 10913:38420-38439 | None:intergenic | 45.0% |
| AAGGGGGGTGAGAGAAGAAA+AGG | + | 10913:38313-38332 | None:intergenic | 50.0% | |
| AGGGAGTAGGAAAGTTTGCG+TGG | + | 10913:38261-38280 | None:intergenic | 50.0% | |
| AGGGGGGTGAGAGAAGAAAA+GGG | + | 10913:38312-38331 | None:intergenic | 50.0% | |
| AGTGGTTGTGGGCGTCTATT+AGG | + | 10913:39624-39643 | None:intergenic | 50.0% | |
| ATGTATGCATCAGTCGTGGG+TGG | - | 10913:39898-39917 | MS.gene21115:intron | 50.0% | |
| CCTCGCAGCAAAACCATACT+TGG | + | 10913:40133-40152 | None:intergenic | 50.0% | |
| CTAGTATGAGGTGGTTGTGG+TGG | + | 10913:39675-39694 | None:intergenic | 50.0% | |
| GGAGAGCAGAACTTGGCATT+TGG | - | 10913:40346-40365 | MS.gene21115:intron | 50.0% | |
| GGCGTCTATTAGGGTAATGC+AGG | + | 10913:39614-39633 | None:intergenic | 50.0% | |
| GTGGTTGTGGGCGTCTATTA+GGG | + | 10913:39623-39642 | None:intergenic | 50.0% | |
| TAATAGACGCCCACAACCAC+TGG | - | 10913:39623-39642 | MS.gene21115:intron | 50.0% | |
| TCTACCCTCTATCAGCCCAA+CGG | + | 10913:41322-41341 | None:intergenic | 50.0% | |
| TGGAAGTTGTGAGGACTCTC+CGG | - | 10913:41236-41255 | MS.gene21115:CDS | 50.0% | |
| TTCCTCCTCATCCACCAACA+AGG | - | 10913:39215-39234 | MS.gene21115:CDS | 50.0% | |
| !! | CCAAGTATGGTTTTGCTGCG+AGG | - | 10913:40130-40149 | MS.gene21115:intron | 50.0% |
| !! | CGGTGTCGTTTAAGGTGGTT+GGG | + | 10913:38415-38434 | None:intergenic | 50.0% |
| !! | TCGGTGTCGTTTAAGGTGGT+TGG | + | 10913:38416-38435 | None:intergenic | 50.0% |
| ACTCCCTCAACCATCACCAC+CGG | - | 10913:38274-38293 | MS.gene21115:CDS | 55.0% | |
| ATACGGTCAGTCCGTTGGAC+CGG | - | 10913:39568-39587 | MS.gene21115:intron | 55.0% | |
| CCAACGGGCAACCACATCTT+CGG | + | 10913:41306-41325 | None:intergenic | 55.0% | |
| CGAAGATGTGGTTGCCCGTT+GGG | - | 10913:41304-41323 | MS.gene21115:CDS | 55.0% | |
| CTACCCTCTATCAGCCCAAC+GGG | + | 10913:41321-41340 | None:intergenic | 55.0% | |
| GAAATGGAAGCCGGTGGTGA+TGG | + | 10913:38287-38306 | None:intergenic | 55.0% | |
| GACACAACACAGCTCTCACG+AGG | - | 10913:39025-39044 | MS.gene21115:intron | 55.0% | |
| GGGGTGAGAGAAGAAAAGGG+AGG | + | 10913:38309-38328 | None:intergenic | 55.0% | |
| TATGCATCAGTCGTGGGTGG+TGG | - | 10913:39901-39920 | MS.gene21115:intron | 55.0% | |
| TTGCCCGTTGGGCTGATAGA+GGG | - | 10913:41315-41334 | MS.gene21115:CDS | 55.0% | |
| ! | CTGGTTTGCGCGAGTTTGCA+TGG | + | 10913:40570-40589 | None:intergenic | 55.0% |
| ! | GACCTTGTTGGTGGATGAGG+AGG | + | 10913:39220-39239 | None:intergenic | 55.0% |
| !! | AAGCCGGTGGTGATGGTTGA+GGG | + | 10913:38280-38299 | None:intergenic | 55.0% |
| !! | GTGGTGATGGTTGAGGGAGT+AGG | + | 10913:38274-38293 | None:intergenic | 55.0% |
| AGGGAGGAAATGGAAGCCGG+TGG | + | 10913:38293-38312 | None:intergenic | 60.0% | |
| CCGAAGATGTGGTTGCCCGT+TGG | - | 10913:41303-41322 | MS.gene21115:CDS | 60.0% | |
| GTGGCTACGCCAGTGGTTGT+GGG | + | 10913:39635-39654 | None:intergenic | 60.0% | |
| GTTGCCCGTTGGGCTGATAG+AGG | - | 10913:41314-41333 | MS.gene21115:CDS | 60.0% | |
| !! | GAAGCCGGTGGTGATGGTTG+AGG | + | 10913:38281-38300 | None:intergenic | 60.0% |
| GGCGTAGCCACCACAACCAC+TGG | - | 10913:39644-39663 | MS.gene21115:intron | 65.0% | |
| GGCTACGCCAGTGGTTGTGG+TGG | + | 10913:39633-39652 | None:intergenic | 65.0% | |
| GGTGGCTACGCCAGTGGTTG+TGG | + | 10913:39636-39655 | None:intergenic | 65.0% | |
| GGTTGTGGTGGCTACGCCAG+TGG | + | 10913:39642-39661 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10913 | gene | 38239 | 41434 | 38239 | ID=MS.gene21115 |
| 10913 | mRNA | 38239 | 41434 | 38239 | ID=MS.gene21115.t1;Parent=MS.gene21115 |
| 10913 | exon | 40973 | 41434 | 40973 | ID=MS.gene21115.t1.exon1;Parent=MS.gene21115.t1 |
| 10913 | CDS | 40973 | 41434 | 40973 | ID=cds.MS.gene21115.t1;Parent=MS.gene21115.t1 |
| 10913 | exon | 39163 | 39330 | 39163 | ID=MS.gene21115.t1.exon2;Parent=MS.gene21115.t1 |
| 10913 | CDS | 39163 | 39330 | 39163 | ID=cds.MS.gene21115.t1;Parent=MS.gene21115.t1 |
| 10913 | exon | 38239 | 38448 | 38239 | ID=MS.gene21115.t1.exon3;Parent=MS.gene21115.t1 |
| 10913 | CDS | 38239 | 38448 | 38239 | ID=cds.MS.gene21115.t1;Parent=MS.gene21115.t1 |
| Gene Sequence |
| Protein sequence |
