Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21575.t1 | XP_003591636.2 | 93.3 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 9.40E-120 | 439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21575.t1 | Q03664 | 47.7 | 220 | 112 | 2 | 1 | 220 | 1 | 217 | 2.4e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21575.t1 | Q1RSI2 | 93.3 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 6.8e-120 | 439.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049573 | MS.gene21575 | 0.810863 | 9.33E-51 | -1.69E-46 |
| MS.gene050363 | MS.gene21575 | 0.810575 | 1.08E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene21575 | 0.855595 | 5.68E-62 | -1.69E-46 |
| MS.gene05142 | MS.gene21575 | 0.818721 | 1.69E-52 | -1.69E-46 |
| MS.gene051946 | MS.gene21575 | 0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene21575 | 0.848118 | 7.51E-60 | -1.69E-46 |
| MS.gene053826 | MS.gene21575 | 0.834616 | 2.70E-56 | -1.69E-46 |
| MS.gene055154 | MS.gene21575 | 0.814809 | 1.28E-51 | -1.69E-46 |
| MS.gene055549 | MS.gene21575 | 0.845783 | 3.27E-59 | -1.69E-46 |
| MS.gene055550 | MS.gene21575 | 0.851043 | 1.15E-60 | -1.69E-46 |
| MS.gene055551 | MS.gene21575 | 0.850323 | 1.83E-60 | -1.69E-46 |
| MS.gene056311 | MS.gene21575 | 0.843637 | 1.24E-58 | -1.69E-46 |
| MS.gene056408 | MS.gene21575 | 0.823298 | 1.49E-53 | -1.69E-46 |
| MS.gene056530 | MS.gene21575 | 0.868368 | 6.88E-66 | -1.69E-46 |
| MS.gene057014 | MS.gene21575 | 0.827333 | 1.66E-54 | -1.69E-46 |
| MS.gene057499 | MS.gene21575 | 0.822577 | 2.20E-53 | -1.69E-46 |
| MS.gene058493 | MS.gene21575 | 0.829401 | 5.26E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene21575 | 0.833465 | 5.25E-56 | -1.69E-46 |
| MS.gene058496 | MS.gene21575 | 0.811799 | 5.84E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene21575 | 0.825646 | 4.18E-54 | -1.69E-46 |
| MS.gene058629 | MS.gene21575 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene21575 | 0.829101 | 6.21E-55 | -1.69E-46 |
| MS.gene05884 | MS.gene21575 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene059052 | MS.gene21575 | 0.83466 | 2.64E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21575.t1 | MTR_1g090060 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 6.03e-158 | 436 |
| MS.gene21575.t1 | MTR_1g090100 | 89.302 | 215 | 23 | 0 | 4 | 218 | 3 | 217 | 1.18e-141 | 395 |
| MS.gene21575.t1 | MTR_1g090090 | 83.111 | 225 | 38 | 0 | 1 | 225 | 1 | 225 | 3.34e-139 | 389 |
| MS.gene21575.t1 | MTR_1g090070 | 81.900 | 221 | 39 | 1 | 1 | 220 | 7 | 227 | 1.89e-135 | 379 |
| MS.gene21575.t1 | MTR_4g059730 | 69.767 | 215 | 65 | 0 | 3 | 217 | 4 | 218 | 5.73e-113 | 322 |
| MS.gene21575.t1 | MTR_1g115195 | 48.131 | 214 | 108 | 2 | 1 | 212 | 1 | 213 | 6.88e-67 | 206 |
| MS.gene21575.t1 | MTR_1g090150 | 49.528 | 212 | 104 | 2 | 1 | 211 | 1 | 210 | 5.72e-66 | 203 |
| MS.gene21575.t1 | MTR_3g099757 | 47.619 | 210 | 106 | 2 | 1 | 208 | 1 | 208 | 6.69e-64 | 198 |
| MS.gene21575.t1 | MTR_5g040430 | 42.661 | 218 | 121 | 2 | 2 | 215 | 6 | 223 | 7.33e-59 | 185 |
| MS.gene21575.t1 | MTR_4g019790 | 42.986 | 221 | 122 | 2 | 2 | 221 | 6 | 223 | 2.35e-58 | 184 |
| MS.gene21575.t1 | MTR_4g019780 | 44.444 | 216 | 116 | 3 | 3 | 217 | 8 | 220 | 6.81e-57 | 180 |
| MS.gene21575.t1 | MTR_7g065660 | 43.636 | 220 | 118 | 4 | 4 | 221 | 8 | 223 | 5.85e-56 | 178 |
| MS.gene21575.t1 | MTR_6g080440 | 41.778 | 225 | 127 | 3 | 1 | 224 | 1 | 222 | 1.34e-55 | 177 |
| MS.gene21575.t1 | MTR_7g065740 | 43.925 | 214 | 113 | 4 | 3 | 213 | 7 | 216 | 2.06e-55 | 176 |
| MS.gene21575.t1 | MTR_7g065230 | 43.891 | 221 | 115 | 4 | 3 | 222 | 7 | 219 | 2.41e-55 | 176 |
| MS.gene21575.t1 | MTR_7g065720 | 43.578 | 218 | 118 | 2 | 3 | 218 | 7 | 221 | 2.70e-55 | 176 |
| MS.gene21575.t1 | MTR_8g087425 | 43.602 | 211 | 117 | 1 | 3 | 213 | 5 | 213 | 4.92e-55 | 176 |
| MS.gene21575.t1 | MTR_2g070150 | 45.366 | 205 | 107 | 3 | 3 | 206 | 4 | 204 | 1.53e-54 | 174 |
| MS.gene21575.t1 | MTR_2g070120 | 44.076 | 211 | 113 | 3 | 3 | 212 | 4 | 210 | 3.60e-54 | 173 |
| MS.gene21575.t1 | MTR_7g065590 | 41.892 | 222 | 123 | 4 | 3 | 222 | 7 | 224 | 1.66e-53 | 171 |
| MS.gene21575.t1 | MTR_8g087410 | 42.009 | 219 | 125 | 1 | 3 | 221 | 6 | 222 | 3.27e-53 | 171 |
| MS.gene21575.t1 | MTR_2g070130 | 41.748 | 206 | 115 | 3 | 3 | 207 | 4 | 205 | 4.76e-53 | 170 |
| MS.gene21575.t1 | MTR_7g065630 | 41.364 | 220 | 121 | 3 | 3 | 221 | 25 | 237 | 1.98e-52 | 169 |
| MS.gene21575.t1 | MTR_7g065710 | 43.333 | 210 | 111 | 3 | 4 | 212 | 5 | 207 | 2.25e-52 | 169 |
| MS.gene21575.t1 | MTR_2g070200 | 42.922 | 219 | 118 | 5 | 3 | 218 | 4 | 218 | 7.61e-52 | 167 |
| MS.gene21575.t1 | MTR_2g070210 | 40.930 | 215 | 120 | 4 | 3 | 214 | 4 | 214 | 7.77e-52 | 167 |
| MS.gene21575.t1 | MTR_7g065600 | 41.176 | 221 | 124 | 4 | 4 | 222 | 8 | 224 | 1.18e-51 | 167 |
| MS.gene21575.t1 | MTR_2g070180 | 42.718 | 206 | 113 | 3 | 3 | 207 | 4 | 205 | 1.51e-51 | 166 |
| MS.gene21575.t1 | MTR_7g065750 | 41.778 | 225 | 122 | 5 | 3 | 224 | 7 | 225 | 1.69e-51 | 166 |
| MS.gene21575.t1 | MTR_2g070140 | 44.162 | 197 | 105 | 3 | 16 | 211 | 1 | 193 | 5.05e-51 | 164 |
| MS.gene21575.t1 | MTR_5g037380 | 40.541 | 222 | 126 | 3 | 3 | 218 | 5 | 226 | 8.53e-51 | 165 |
| MS.gene21575.t1 | MTR_8g061950 | 43.172 | 227 | 121 | 5 | 2 | 221 | 4 | 229 | 1.89e-50 | 164 |
| MS.gene21575.t1 | MTR_7g065290 | 40.465 | 215 | 124 | 2 | 3 | 216 | 7 | 218 | 7.55e-50 | 162 |
| MS.gene21575.t1 | MTR_7g065270 | 40.741 | 216 | 124 | 2 | 3 | 217 | 7 | 219 | 2.77e-49 | 160 |
| MS.gene21575.t1 | MTR_7g065640 | 40.639 | 219 | 108 | 3 | 4 | 221 | 8 | 205 | 3.34e-48 | 157 |
| MS.gene21575.t1 | MTR_7g065265 | 40.278 | 216 | 125 | 2 | 3 | 217 | 7 | 219 | 2.17e-47 | 156 |
| MS.gene21575.t1 | MTR_2g070060 | 41.784 | 213 | 119 | 3 | 3 | 214 | 4 | 212 | 1.75e-46 | 153 |
| MS.gene21575.t1 | MTR_7g065700 | 43.810 | 210 | 110 | 3 | 3 | 211 | 7 | 209 | 1.09e-45 | 152 |
| MS.gene21575.t1 | MTR_7g065260 | 42.152 | 223 | 122 | 5 | 3 | 222 | 14 | 232 | 4.10e-45 | 150 |
| MS.gene21575.t1 | MTR_7g065680 | 41.096 | 219 | 121 | 3 | 3 | 220 | 7 | 218 | 6.55e-45 | 149 |
| MS.gene21575.t1 | MTR_3g467420 | 39.048 | 210 | 123 | 3 | 2 | 210 | 8 | 213 | 1.03e-44 | 149 |
| MS.gene21575.t1 | MTR_3g467430 | 39.423 | 208 | 121 | 3 | 4 | 210 | 10 | 213 | 2.07e-43 | 145 |
| MS.gene21575.t1 | MTR_8g056940 | 40.887 | 203 | 115 | 4 | 10 | 211 | 11 | 209 | 2.09e-43 | 145 |
| MS.gene21575.t1 | MTR_4g124130 | 40.639 | 219 | 122 | 5 | 3 | 218 | 4 | 217 | 8.58e-43 | 144 |
| MS.gene21575.t1 | MTR_2g070070 | 40.845 | 213 | 121 | 3 | 3 | 214 | 4 | 212 | 1.96e-42 | 143 |
| MS.gene21575.t1 | MTR_5g076900 | 38.235 | 204 | 121 | 3 | 9 | 211 | 12 | 211 | 2.65e-40 | 137 |
| MS.gene21575.t1 | MTR_2g070110 | 40.092 | 217 | 116 | 5 | 3 | 214 | 4 | 211 | 3.40e-40 | 137 |
| MS.gene21575.t1 | MTR_0186s0030 | 46.565 | 131 | 69 | 1 | 10 | 139 | 11 | 141 | 2.42e-34 | 120 |
| MS.gene21575.t1 | MTR_2g072120 | 61.017 | 59 | 22 | 1 | 47 | 104 | 2 | 60 | 1.93e-20 | 82.0 |
| MS.gene21575.t1 | MTR_5g037390 | 46.250 | 80 | 40 | 1 | 29 | 105 | 13 | 92 | 5.90e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21575.t1 | AT3G09270 | 45.205 | 219 | 116 | 3 | 4 | 220 | 7 | 223 | 2.36e-58 | 184 |
| MS.gene21575.t1 | AT2G29460 | 41.096 | 219 | 126 | 2 | 3 | 220 | 7 | 223 | 1.90e-57 | 182 |
| MS.gene21575.t1 | AT2G29420 | 42.593 | 216 | 122 | 1 | 3 | 218 | 9 | 222 | 5.78e-57 | 181 |
| MS.gene21575.t1 | AT2G29470 | 41.364 | 220 | 125 | 3 | 4 | 221 | 8 | 225 | 8.30e-57 | 180 |
| MS.gene21575.t1 | AT2G29450 | 42.601 | 223 | 118 | 4 | 3 | 220 | 6 | 223 | 1.03e-55 | 177 |
| MS.gene21575.t1 | AT2G29440 | 42.152 | 223 | 120 | 4 | 3 | 221 | 6 | 223 | 4.89e-54 | 173 |
| MS.gene21575.t1 | AT2G29490 | 41.096 | 219 | 126 | 2 | 4 | 221 | 8 | 224 | 6.61e-54 | 172 |
| MS.gene21575.t1 | AT1G10370 | 42.857 | 224 | 123 | 3 | 2 | 220 | 4 | 227 | 1.54e-53 | 172 |
| MS.gene21575.t1 | AT2G29480 | 40.639 | 219 | 127 | 2 | 4 | 221 | 8 | 224 | 2.15e-53 | 171 |
| MS.gene21575.t1 | AT1G59670 | 40.969 | 227 | 128 | 4 | 3 | 223 | 6 | 232 | 4.98e-52 | 168 |
| MS.gene21575.t1 | AT1G78340 | 42.584 | 209 | 115 | 3 | 3 | 210 | 4 | 208 | 2.01e-50 | 164 |
| MS.gene21575.t1 | AT1G17180 | 39.631 | 217 | 126 | 3 | 3 | 218 | 4 | 216 | 1.15e-49 | 162 |
| MS.gene21575.t1 | AT1G59700 | 41.048 | 229 | 127 | 5 | 3 | 225 | 6 | 232 | 1.56e-49 | 162 |
| MS.gene21575.t1 | AT1G78370 | 41.748 | 206 | 115 | 4 | 6 | 210 | 7 | 208 | 1.65e-49 | 161 |
| MS.gene21575.t1 | AT1G10360 | 41.964 | 224 | 123 | 4 | 3 | 220 | 5 | 227 | 3.04e-48 | 158 |
| MS.gene21575.t1 | AT1G78380 | 42.130 | 216 | 120 | 4 | 3 | 217 | 4 | 215 | 3.23e-48 | 158 |
| MS.gene21575.t1 | AT5G62480 | 37.443 | 219 | 130 | 2 | 3 | 214 | 8 | 226 | 3.63e-48 | 158 |
| MS.gene21575.t1 | AT1G78320 | 40.580 | 207 | 118 | 3 | 3 | 208 | 4 | 206 | 2.71e-47 | 155 |
| MS.gene21575.t1 | AT1G17170 | 41.014 | 217 | 122 | 5 | 3 | 218 | 4 | 215 | 5.12e-47 | 155 |
| MS.gene21575.t1 | AT1G74590 | 36.986 | 219 | 135 | 2 | 2 | 217 | 6 | 224 | 1.40e-46 | 154 |
| MS.gene21575.t1 | AT1G78360 | 39.535 | 215 | 124 | 4 | 2 | 214 | 3 | 213 | 9.63e-45 | 149 |
| MS.gene21575.t1 | AT1G69930 | 40.284 | 211 | 122 | 3 | 4 | 210 | 13 | 223 | 8.20e-44 | 147 |
| MS.gene21575.t1 | AT1G27130 | 40.845 | 213 | 120 | 4 | 4 | 210 | 7 | 219 | 9.64e-44 | 147 |
| MS.gene21575.t1 | AT1G17190 | 35.455 | 220 | 137 | 3 | 3 | 221 | 5 | 220 | 1.23e-43 | 146 |
| MS.gene21575.t1 | AT3G43800 | 37.615 | 218 | 129 | 4 | 3 | 216 | 5 | 219 | 1.76e-41 | 141 |
| MS.gene21575.t1 | AT1G53680 | 38.614 | 202 | 117 | 4 | 9 | 207 | 13 | 210 | 4.33e-41 | 140 |
| MS.gene21575.t1 | AT1G27140 | 39.819 | 221 | 126 | 4 | 4 | 217 | 7 | 227 | 9.25e-41 | 139 |
| MS.gene21575.t1 | AT1G69920 | 38.498 | 213 | 125 | 4 | 4 | 210 | 35 | 247 | 2.44e-39 | 136 |
| MS.gene21575.t1 | AT5G62480 | 30.876 | 217 | 118 | 2 | 3 | 213 | 8 | 198 | 1.37e-31 | 115 |
| MS.gene21575.t1 | AT5G62480 | 30.876 | 217 | 119 | 2 | 3 | 213 | 8 | 199 | 1.48e-31 | 115 |
| MS.gene21575.t1 | AT1G78320 | 33.010 | 206 | 108 | 3 | 3 | 208 | 4 | 179 | 1.90e-29 | 108 |
Find 44 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCCCTCGATTGCATTTA+TGG | 0.096900 | 1.3:-62976587 | MS.gene21575:CDS |
| TGGTATACCTTTCAAATTTA+AGG | 0.140225 | 1.3:+62977735 | None:intergenic |
| ACAGAGCTCAAGCCCGATTT+TGG | 0.174441 | 1.3:-62977531 | MS.gene21575:CDS |
| AGAAGGCCAGAGAGAATTTA+TGG | 0.204560 | 1.3:-62976767 | MS.gene21575:CDS |
| GCACTCCTCTATAGCAAAAT+TGG | 0.275055 | 1.3:-62976801 | MS.gene21575:CDS |
| CATACTACCCTTAAAGTAAA+AGG | 0.285985 | 1.3:+62977760 | None:intergenic |
| AGCTATGTCTACAATGTTAA+TGG | 0.297246 | 1.3:+62976680 | None:intergenic |
| AGGTGAAACTACATGGATTT+TGG | 0.302285 | 1.3:-62977789 | MS.gene21575:CDS |
| TATCAAATTTATTGAGGTTC+AGG | 0.304577 | 1.3:-62976646 | MS.gene21575:CDS |
| CAACATATTTAACCCAAAAT+CGG | 0.352973 | 1.3:+62977518 | None:intergenic |
| GCCACCAACTTCTCTTGGTC+AGG | 0.366758 | 1.3:+62976522 | None:intergenic |
| TCGGGCTTGAGCTCTGTCAT+AGG | 0.384467 | 1.3:+62977537 | None:intergenic |
| AATGATCATGGACTCACATA+TGG | 0.394155 | 1.3:+62977612 | None:intergenic |
| AGTTATTGAGGATAAGTGTT+TGG | 0.399876 | 1.3:-62976733 | MS.gene21575:CDS |
| GGTTAAATATGTTGATGAAT+TGG | 0.403400 | 1.3:-62977509 | MS.gene21575:intron |
| AACATATTTAACCCAAAATC+GGG | 0.426033 | 1.3:+62977519 | None:intergenic |
| TTGAATACATTGATGAGATA+TGG | 0.441703 | 1.3:-62977588 | MS.gene21575:CDS |
| AACATTGTAGACATAGCTCT+TGG | 0.450264 | 1.3:-62976675 | MS.gene21575:CDS |
| TTCAATTAGAGAATTAAGAA+AGG | 0.461738 | 1.3:+62976500 | None:intergenic |
| GAAAGGCCACCAACTTCTCT+TGG | 0.471563 | 1.3:+62976517 | None:intergenic |
| AATGTATTCAACAATGATCA+TGG | 0.484642 | 1.3:+62977600 | None:intergenic |
| GAAGGCCAGAGAGAATTTAT+GGG | 0.489428 | 1.3:-62976766 | MS.gene21575:CDS |
| TCTTCCTCTATGTTCTCATA+TGG | 0.502605 | 1.3:+62977715 | None:intergenic |
| CACCCCTGACCAAGAGAAGT+TGG | 0.508213 | 1.3:-62976526 | MS.gene21575:CDS |
| TCGCTCCCATAAATTCTCTC+TGG | 0.520342 | 1.3:+62976761 | None:intergenic |
| TTTCCATCATGAACTAGCAC+TGG | 0.520703 | 1.3:+62977637 | None:intergenic |
| GATATGGTCACACAACTCAT+TGG | 0.531719 | 1.3:-62977572 | MS.gene21575:CDS |
| ATGATCATGGACTCACATAT+GGG | 0.533497 | 1.3:+62977613 | None:intergenic |
| CGGGCTTGAGCTCTGTCATA+GGG | 0.535527 | 1.3:+62977538 | None:intergenic |
| GCTCTGTCATAGGGATCAGC+AGG | 0.544103 | 1.3:+62977547 | None:intergenic |
| CCACCAACTTCTCTTGGTCA+GGG | 0.547093 | 1.3:+62976523 | None:intergenic |
| TTTACAGATTTCGGCAATTG+CGG | 0.548298 | 1.3:-62976823 | MS.gene21575:intron |
| ATGGCAGAGGTGAAACTACA+TGG | 0.553227 | 1.3:-62977796 | MS.gene21575:CDS |
| GTATGGACCTTAAATTTGAA+AGG | 0.561421 | 1.3:-62977742 | MS.gene21575:CDS |
| GGAGCGACTCAGAGTTATTG+AGG | 0.563356 | 1.3:-62976745 | MS.gene21575:CDS |
| ACTCCAGTGCTAGTTCATGA+TGG | 0.566801 | 1.3:-62977640 | MS.gene21575:CDS |
| CACCAACTTCTCTTGGTCAG+GGG | 0.567960 | 1.3:+62976524 | None:intergenic |
| TTAAACCATAAATGCAATCG+AGG | 0.585366 | 1.3:+62976582 | None:intergenic |
| GGGTTATATTGAAGAAGCAG+AGG | 0.607257 | 1.3:+62977676 | None:intergenic |
| CCCTGACCAAGAGAAGTTGG+TGG | 0.614205 | 1.3:-62976523 | MS.gene21575:CDS |
| TAAACCATAAATGCAATCGA+GGG | 0.618785 | 1.3:+62976583 | None:intergenic |
| AATTGGTGAAGAGCGAGAGA+AGG | 0.634346 | 1.3:-62976784 | MS.gene21575:CDS |
| AACACAAGCTAGGATGGCAG+AGG | 0.663463 | 1.3:-62977809 | None:intergenic |
| TATACCATATGAGAACATAG+AGG | 0.675165 | 1.3:-62977719 | MS.gene21575:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGATTTAATTTAATTTTAT+AGG | - | chr1.3:62976921-62976940 | MS.gene21575:intron | 10.0% |
| !!! | TTTATGGTTTAATAATTTTA+AGG | - | chr1.3:62977695-62977714 | MS.gene21575:CDS | 10.0% |
| !! | AAAATTAAATTAAATCCTCA+TGG | + | chr1.3:62976919-62976938 | None:intergenic | 15.0% |
| !! | ATGTAATTTATCTTTATGAA+TGG | - | chr1.3:62977141-62977160 | MS.gene21575:intron | 15.0% |
| !!! | ATCTTTTATCAAATTTATTG+AGG | - | chr1.3:62977614-62977633 | MS.gene21575:CDS | 15.0% |
| !!! | ATGATCAAAAGAAATTTTAT+GGG | - | chr1.3:62977556-62977575 | MS.gene21575:CDS | 15.0% |
| !! | AAATTAAGTTAAAGGATTCA+TGG | - | chr1.3:62977307-62977326 | MS.gene21575:intron | 20.0% |
| !! | AAGAATGAAAGTTGAATTAA+CGG | + | chr1.3:62976957-62976976 | None:intergenic | 20.0% |
| !! | CTTAATCTTAAGTTTCAAAA+AGG | + | chr1.3:62977264-62977283 | None:intergenic | 20.0% |
| !! | GAAACTTAAGATTAAGTTAA+AGG | - | chr1.3:62977268-62977287 | MS.gene21575:intron | 20.0% |
| !! | TGAAACATTCTTAATAGTAT+AGG | + | chr1.3:62977025-62977044 | None:intergenic | 20.0% |
| !! | TTCAATTAGAGAATTAAGAA+AGG | + | chr1.3:62977769-62977788 | None:intergenic | 20.0% |
| !! | TTCTCTAATTGAAAAAATCA+AGG | - | chr1.3:62977776-62977795 | MS.gene21575:CDS | 20.0% |
| !!! | GATGATCAAAAGAAATTTTA+TGG | - | chr1.3:62977555-62977574 | MS.gene21575:CDS | 20.0% |
| !!! | TGATCAAAAGAAATTTTATG+GGG | - | chr1.3:62977557-62977576 | MS.gene21575:CDS | 20.0% |
| ! | AACATATTTAACCCAAAATC+GGG | + | chr1.3:62976750-62976769 | None:intergenic | 25.0% |
| ! | AATCTATAATTTACTTTCCC+TGG | - | chr1.3:62977348-62977367 | MS.gene21575:intron | 25.0% |
| ! | AATGTATTCAACAATGATCA+TGG | + | chr1.3:62976669-62976688 | None:intergenic | 25.0% |
| ! | CAACATATTTAACCCAAAAT+CGG | + | chr1.3:62976751-62976770 | None:intergenic | 25.0% |
| ! | GAATGGTTAAGTATAACTTA+TGG | - | chr1.3:62977158-62977177 | MS.gene21575:intron | 25.0% |
| ! | GGATCAATATTTACAGATTT+CGG | - | chr1.3:62977434-62977453 | MS.gene21575:intron | 25.0% |
| ! | GTAATAATTATAAGACACCA+GGG | + | chr1.3:62977368-62977387 | None:intergenic | 25.0% |
| ! | TATCAAATTTATTGAGGTTC+AGG | - | chr1.3:62977620-62977639 | MS.gene21575:CDS | 25.0% |
| ! | TGATTCAGACTAACAATATT+TGG | - | chr1.3:62977413-62977432 | MS.gene21575:intron | 25.0% |
| ! | TGGTATACCTTTCAAATTTA+AGG | + | chr1.3:62976534-62976553 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAGATA+TGG | - | chr1.3:62976678-62976697 | MS.gene21575:CDS | 25.0% |
| ! | TTTATGTTCAAAAACGTCAA+CGG | + | chr1.3:62977210-62977229 | None:intergenic | 25.0% |
| !! | GATCAAAAGAAATTTTATGG+GGG | - | chr1.3:62977558-62977577 | MS.gene21575:CDS | 25.0% |
| !! | GGTTAAATATGTTGATGAAT+TGG | - | chr1.3:62976757-62976776 | MS.gene21575:CDS | 25.0% |
| !! | GTATAGTCCTTTTACTTTAA+GGG | - | chr1.3:62976499-62976518 | MS.gene21575:CDS | 25.0% |
| AACTTTGCCTATAAAATGAG+TGG | + | chr1.3:62976893-62976912 | None:intergenic | 30.0% | |
| AGCTATGTCTACAATGTTAA+TGG | + | chr1.3:62977589-62977608 | None:intergenic | 30.0% | |
| AGTTATTGAGGATAAGTGTT+TGG | - | chr1.3:62977533-62977552 | MS.gene21575:CDS | 30.0% | |
| ATGTATTGTGCAAGTACAAT+TGG | + | chr1.3:62976867-62976886 | None:intergenic | 30.0% | |
| CATACTACCCTTAAAGTAAA+AGG | + | chr1.3:62976509-62976528 | None:intergenic | 30.0% | |
| GGTAATAATTATAAGACACC+AGG | + | chr1.3:62977369-62977388 | None:intergenic | 30.0% | |
| GTATGGACCTTAAATTTGAA+AGG | - | chr1.3:62976524-62976543 | MS.gene21575:CDS | 30.0% | |
| TAAACCATAAATGCAATCGA+GGG | + | chr1.3:62977686-62977705 | None:intergenic | 30.0% | |
| TATACCATATGAGAACATAG+AGG | - | chr1.3:62976547-62976566 | MS.gene21575:CDS | 30.0% | |
| TGAGATGGTTAGAACATATT+AGG | + | chr1.3:62977390-62977409 | None:intergenic | 30.0% | |
| TTAAACCATAAATGCAATCG+AGG | + | chr1.3:62977687-62977706 | None:intergenic | 30.0% | |
| ! | ACATGTTCCACTCATTTTAT+AGG | - | chr1.3:62976883-62976902 | MS.gene21575:intron | 30.0% |
| ! | GGTATAGTCCTTTTACTTTA+AGG | - | chr1.3:62976498-62976517 | MS.gene21575:CDS | 30.0% |
| !! | CTTTTACTTTAAGGGTAGTA+TGG | - | chr1.3:62976507-62976526 | MS.gene21575:CDS | 30.0% |
| AACATTGTAGACATAGCTCT+TGG | - | chr1.3:62977591-62977610 | MS.gene21575:CDS | 35.0% | |
| AATGATCATGGACTCACATA+TGG | + | chr1.3:62976657-62976676 | None:intergenic | 35.0% | |
| ATGATCATGGACTCACATAT+GGG | + | chr1.3:62976656-62976675 | None:intergenic | 35.0% | |
| CAATTGGATTATGATCACGA+TGG | + | chr1.3:62976851-62976870 | None:intergenic | 35.0% | |
| TAGTCTGAATCAAGATGAGA+TGG | + | chr1.3:62977405-62977424 | None:intergenic | 35.0% | |
| TCTTCCTCTATGTTCTCATA+TGG | + | chr1.3:62976554-62976573 | None:intergenic | 35.0% | |
| TGAAAAAATCAAGGCAGTCA+AGG | - | chr1.3:62977785-62977804 | MS.gene21575:CDS | 35.0% | |
| TTTACAGATTTCGGCAATTG+CGG | - | chr1.3:62977443-62977462 | MS.gene21575:intron | 35.0% | |
| ! | ACTGGAGTTTTCTTGTGTAT+TGG | + | chr1.3:62976614-62976633 | None:intergenic | 35.0% |
| ! | AGGTGAAACTACATGGATTT+TGG | - | chr1.3:62976477-62976496 | MS.gene21575:CDS | 35.0% |
| ! | CTGGAGTTTTCTTGTGTATT+GGG | + | chr1.3:62976613-62976632 | None:intergenic | 35.0% |
| !! | CTTCACCAATTTTGCTATAG+AGG | + | chr1.3:62977473-62977492 | None:intergenic | 35.0% |
| !!! | CATCTTTTTTCGTGTCAAGT+TGG | + | chr1.3:62977236-62977255 | None:intergenic | 35.0% |
| AGAAGGCCAGAGAGAATTTA+TGG | - | chr1.3:62977499-62977518 | MS.gene21575:intron | 40.0% | |
| ATAGGCAAAGTTACACCATG+AGG | - | chr1.3:62976901-62976920 | MS.gene21575:intron | 40.0% | |
| GAAGGCCAGAGAGAATTTAT+GGG | - | chr1.3:62977500-62977519 | MS.gene21575:intron | 40.0% | |
| GATATGGTCACACAACTCAT+TGG | - | chr1.3:62976694-62976713 | MS.gene21575:CDS | 40.0% | |
| GATTCCCTCGATTGCATTTA+TGG | - | chr1.3:62977679-62977698 | MS.gene21575:CDS | 40.0% | |
| GCACTCCTCTATAGCAAAAT+TGG | - | chr1.3:62977465-62977484 | MS.gene21575:intron | 40.0% | |
| GGGTTATATTGAAGAAGCAG+AGG | + | chr1.3:62976593-62976612 | None:intergenic | 40.0% | |
| TTTCCATCATGAACTAGCAC+TGG | + | chr1.3:62976632-62976651 | None:intergenic | 40.0% | |
| !!! | AGGGGTGTTTTCTTTGATGA+CGG | + | chr1.3:62977727-62977746 | None:intergenic | 40.0% |
| AATTGGTGAAGAGCGAGAGA+AGG | - | chr1.3:62977482-62977501 | MS.gene21575:intron | 45.0% | |
| ACTCCAGTGCTAGTTCATGA+TGG | - | chr1.3:62976626-62976645 | MS.gene21575:CDS | 45.0% | |
| ATGGCAGAGGTGAAACTACA+TGG | - | chr1.3:62976470-62976489 | MS.gene21575:CDS | 45.0% | |
| TCGCTCCCATAAATTCTCTC+TGG | + | chr1.3:62977508-62977527 | None:intergenic | 45.0% | |
| !! | GGGGTGTTTTCTTTGATGAC+GGG | + | chr1.3:62977726-62977745 | None:intergenic | 45.0% |
| !! | ATAAAAAAAAATTAAGTTAA+AGG | - | chr1.3:62977299-62977318 | MS.gene21575:intron | 5.0% |
| CACCAACTTCTCTTGGTCAG+GGG | + | chr1.3:62977745-62977764 | None:intergenic | 50.0% | |
| CCACCAACTTCTCTTGGTCA+GGG | + | chr1.3:62977746-62977765 | None:intergenic | 50.0% | |
| GAAAGGCCACCAACTTCTCT+TGG | + | chr1.3:62977752-62977771 | None:intergenic | 50.0% | |
| GGAGCGACTCAGAGTTATTG+AGG | - | chr1.3:62977521-62977540 | MS.gene21575:CDS | 50.0% | |
| ! | ACAGAGCTCAAGCCCGATTT+TGG | - | chr1.3:62976735-62976754 | MS.gene21575:CDS | 50.0% |
| ! | CAGAGCTCAAGCCCGATTTT+GGG | - | chr1.3:62976736-62976755 | MS.gene21575:CDS | 50.0% |
| CACCCCTGACCAAGAGAAGT+TGG | - | chr1.3:62977740-62977759 | MS.gene21575:CDS | 55.0% | |
| CCCTGACCAAGAGAAGTTGG+TGG | - | chr1.3:62977743-62977762 | MS.gene21575:CDS | 55.0% | |
| CGGGCTTGAGCTCTGTCATA+GGG | + | chr1.3:62976731-62976750 | None:intergenic | 55.0% | |
| GCCACCAACTTCTCTTGGTC+AGG | + | chr1.3:62977747-62977766 | None:intergenic | 55.0% | |
| GCTCTGTCATAGGGATCAGC+AGG | + | chr1.3:62976722-62976741 | None:intergenic | 55.0% | |
| TCGGGCTTGAGCTCTGTCAT+AGG | + | chr1.3:62976732-62976751 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 62976470 | 62977818 | 62976470 | ID=MS.gene21575 |
| chr1.3 | mRNA | 62976470 | 62977818 | 62976470 | ID=MS.gene21575.t1;Parent=MS.gene21575 |
| chr1.3 | exon | 62977510 | 62977818 | 62977510 | ID=MS.gene21575.t1.exon1;Parent=MS.gene21575.t1 |
| chr1.3 | CDS | 62977510 | 62977818 | 62977510 | ID=cds.MS.gene21575.t1;Parent=MS.gene21575.t1 |
| chr1.3 | exon | 62976470 | 62976838 | 62976470 | ID=MS.gene21575.t1.exon2;Parent=MS.gene21575.t1 |
| chr1.3 | CDS | 62976470 | 62976838 | 62976470 | ID=cds.MS.gene21575.t1;Parent=MS.gene21575.t1 |
| Gene Sequence |
| Protein sequence |
