Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21613.t1 | XP_003591690.1 | 89 | 849 | 23 | 3 | 2 | 780 | 1 | 849 | 0.00E+00 | 1438.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21613.t1 | Q9SVD0 | 44.9 | 847 | 360 | 22 | 2 | 778 | 1 | 810 | 4.7e-159 | 563.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21613.t1 | G7I415 | 89.0 | 849 | 23 | 3 | 2 | 780 | 1 | 849 | 0.0e+00 | 1438.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene21613 | 0.830729 | 2.49E-55 | -1.69E-46 |
MS.gene049672 | MS.gene21613 | 0.812485 | 4.14E-51 | -1.69E-46 |
MS.gene049711 | MS.gene21613 | 0.818905 | 1.54E-52 | -1.69E-46 |
MS.gene049850 | MS.gene21613 | 0.80782 | 4.19E-50 | -1.69E-46 |
MS.gene05045 | MS.gene21613 | 0.8029 | 4.50E-49 | -1.69E-46 |
MS.gene050901 | MS.gene21613 | 0.805724 | 1.16E-49 | -1.69E-46 |
MS.gene051247 | MS.gene21613 | 0.827706 | 1.35E-54 | -1.69E-46 |
MS.gene05157 | MS.gene21613 | 0.811091 | 8.33E-51 | -1.69E-46 |
MS.gene051719 | MS.gene21613 | 0.823594 | 1.27E-53 | -1.69E-46 |
MS.gene051720 | MS.gene21613 | 0.855283 | 7.00E-62 | -1.69E-46 |
MS.gene051744 | MS.gene21613 | 0.833791 | 4.35E-56 | -1.69E-46 |
MS.gene053144 | MS.gene21613 | 0.809957 | 1.46E-50 | -1.69E-46 |
MS.gene053226 | MS.gene21613 | 0.840832 | 6.86E-58 | -1.69E-46 |
MS.gene053536 | MS.gene21613 | 0.804756 | 1.85E-49 | -1.69E-46 |
MS.gene054142 | MS.gene21613 | 0.815067 | 1.12E-51 | -1.69E-46 |
MS.gene054584 | MS.gene21613 | 0.813773 | 2.16E-51 | -1.69E-46 |
MS.gene05458 | MS.gene21613 | 0.80318 | 3.94E-49 | -1.69E-46 |
MS.gene054775 | MS.gene21613 | 0.811231 | 7.76E-51 | -1.69E-46 |
MS.gene054801 | MS.gene21613 | 0.802535 | 5.36E-49 | -1.69E-46 |
MS.gene055260 | MS.gene21613 | 0.808648 | 2.79E-50 | -1.69E-46 |
MS.gene055465 | MS.gene21613 | 0.820645 | 6.15E-53 | -1.69E-46 |
MS.gene055466 | MS.gene21613 | 0.82282 | 1.93E-53 | -1.69E-46 |
MS.gene055537 | MS.gene21613 | 0.833789 | 4.36E-56 | -1.69E-46 |
MS.gene055818 | MS.gene21613 | 0.803011 | 4.27E-49 | -1.69E-46 |
MS.gene056050 | MS.gene21613 | 0.819038 | 1.43E-52 | -1.69E-46 |
MS.gene056174 | MS.gene21613 | 0.80401 | 2.65E-49 | -1.69E-46 |
MS.gene056308 | MS.gene21613 | 0.826221 | 3.06E-54 | -1.69E-46 |
MS.gene056595 | MS.gene21613 | 0.810949 | 8.94E-51 | -1.69E-46 |
MS.gene057082 | MS.gene21613 | 0.801696 | 7.97E-49 | -1.69E-46 |
MS.gene057132 | MS.gene21613 | 0.820265 | 7.52E-53 | -1.69E-46 |
MS.gene057915 | MS.gene21613 | 0.807769 | 4.30E-50 | -1.69E-46 |
MS.gene058339 | MS.gene21613 | 0.809102 | 2.23E-50 | -1.69E-46 |
MS.gene05847 | MS.gene21613 | 0.815432 | 9.27E-52 | -1.69E-46 |
MS.gene05894 | MS.gene21613 | 0.837177 | 6.06E-57 | -1.69E-46 |
MS.gene059015 | MS.gene21613 | 0.80765 | 4.56E-50 | -1.69E-46 |
MS.gene059625 | MS.gene21613 | 0.826909 | 2.09E-54 | -1.69E-46 |
MS.gene060519 | MS.gene21613 | 0.809376 | 1.95E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21613.t1 | MTR_1g090640 | 92.141 | 509 | 27 | 2 | 2 | 510 | 1 | 496 | 0.0 | 950 |
MS.gene21613.t1 | MTR_1g090640 | 93.312 | 314 | 19 | 2 | 469 | 780 | 536 | 849 | 1.84e-177 | 531 |
MS.gene21613.t1 | MTR_1g057150 | 47.236 | 832 | 359 | 25 | 2 | 780 | 1 | 805 | 0.0 | 621 |
MS.gene21613.t1 | MTR_2g038200 | 41.752 | 491 | 231 | 16 | 2 | 458 | 1 | 470 | 7.10e-95 | 318 |
MS.gene21613.t1 | MTR_4g129230 | 36.399 | 511 | 260 | 18 | 2 | 461 | 1 | 497 | 3.82e-76 | 266 |
MS.gene21613.t1 | MTR_4g127290 | 63.068 | 176 | 50 | 5 | 2 | 168 | 1 | 170 | 4.83e-54 | 201 |
MS.gene21613.t1 | MTR_1183s0010 | 59.155 | 142 | 45 | 3 | 642 | 778 | 148 | 281 | 1.80e-42 | 156 |
MS.gene21613.t1 | MTR_1183s0010 | 70.423 | 71 | 18 | 2 | 100 | 168 | 28 | 97 | 6.04e-19 | 88.6 |
MS.gene21613.t1 | MTR_3g464150 | 29.645 | 479 | 279 | 14 | 12 | 458 | 10 | 462 | 4.15e-35 | 144 |
MS.gene21613.t1 | MTR_1384s0010 | 54.762 | 126 | 32 | 4 | 2 | 124 | 1 | 104 | 6.89e-30 | 114 |
MS.gene21613.t1 | MTR_5g071060 | 30.583 | 412 | 212 | 16 | 12 | 390 | 10 | 380 | 2.10e-27 | 119 |
MS.gene21613.t1 | MTR_5g071060 | 30.583 | 412 | 212 | 16 | 12 | 390 | 10 | 380 | 2.17e-27 | 119 |
MS.gene21613.t1 | MTR_3g070850 | 27.664 | 488 | 272 | 19 | 12 | 458 | 10 | 457 | 1.66e-26 | 117 |
MS.gene21613.t1 | MTR_4g109450 | 27.551 | 294 | 184 | 10 | 25 | 314 | 17 | 285 | 1.21e-16 | 85.1 |
MS.gene21613.t1 | MTR_4g109450 | 27.551 | 294 | 184 | 10 | 25 | 314 | 17 | 285 | 1.26e-16 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21613.t1 | AT3G52490 | 44.668 | 844 | 366 | 22 | 2 | 778 | 1 | 810 | 0.0 | 593 |
MS.gene21613.t1 | AT5G57130 | 30.397 | 931 | 428 | 33 | 2 | 762 | 1 | 881 | 1.02e-87 | 299 |
MS.gene21613.t1 | AT4G29920 | 36.923 | 520 | 251 | 14 | 2 | 458 | 1 | 506 | 8.24e-85 | 291 |
MS.gene21613.t1 | AT4G29920 | 36.944 | 517 | 252 | 14 | 2 | 458 | 1 | 503 | 1.16e-84 | 290 |
MS.gene21613.t1 | AT4G30350 | 31.432 | 789 | 402 | 28 | 2 | 719 | 1 | 721 | 2.15e-79 | 274 |
MS.gene21613.t1 | AT5G57710 | 39.235 | 497 | 226 | 20 | 2 | 461 | 1 | 458 | 1.25e-78 | 273 |
MS.gene21613.t1 | AT2G40130 | 26.913 | 758 | 446 | 25 | 12 | 729 | 10 | 699 | 2.55e-43 | 169 |
MS.gene21613.t1 | AT2G29970 | 29.607 | 483 | 276 | 15 | 12 | 463 | 10 | 459 | 4.52e-42 | 166 |
MS.gene21613.t1 | AT2G40130 | 31.234 | 397 | 224 | 13 | 12 | 383 | 10 | 382 | 2.66e-35 | 144 |
MS.gene21613.t1 | AT1G07200 | 27.362 | 508 | 279 | 17 | 12 | 467 | 10 | 479 | 3.53e-33 | 138 |
MS.gene21613.t1 | AT1G74310 | 26.129 | 310 | 194 | 11 | 12 | 314 | 4 | 285 | 3.12e-16 | 83.6 |
MS.gene21613.t1 | AT1G74310 | 26.129 | 310 | 194 | 11 | 12 | 314 | 4 | 285 | 3.33e-16 | 83.6 |
Find 118 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCTTCCCTAGAAACTATT+TGG | 0.153510 | 1.3:-63298417 | MS.gene21613:CDS |
AGAGGGGTTATTCTTTATTT+AGG | 0.203554 | 1.3:-63298622 | MS.gene21613:CDS |
TTATTCAATGACTTGACTTT+TGG | 0.237281 | 1.3:-63298183 | MS.gene21613:CDS |
TCTCGATCGTTCCGCGTCTT+TGG | 0.250193 | 1.3:+63299178 | None:intergenic |
AGGCTTAAGGCTAAGTTCTT+TGG | 0.260826 | 1.3:+63298951 | None:intergenic |
GAGTGGTAGATTATGGCTTA+TGG | 0.282735 | 1.3:-63298482 | MS.gene21613:CDS |
TCCTTCACTTTCCAATGCTT+TGG | 0.297130 | 1.3:-63299229 | MS.gene21613:CDS |
TATAATAACTCACACTCTTT+TGG | 0.298041 | 1.3:+63297463 | None:intergenic |
AAGCCTTGTGAAAAGCTATA+TGG | 0.299255 | 1.3:-63298647 | MS.gene21613:CDS |
TCACTTGAAGAAGCTGAGTT+TGG | 0.312758 | 1.3:+63297331 | None:intergenic |
GAAGCTCCCAAATAGTTTCT+AGG | 0.313524 | 1.3:+63298410 | None:intergenic |
TGAAATGGTTGTTTGAGTTT+TGG | 0.332695 | 1.3:-63298594 | MS.gene21613:CDS |
TTTGACAAAAGATCTGGTTT+TGG | 0.333075 | 1.3:+63297367 | None:intergenic |
TGTAACAACTTTATGACAAT+TGG | 0.336252 | 1.3:-63297025 | MS.gene21613:CDS |
CTATTGTTCTGTTGAGCATA+TGG | 0.340911 | 1.3:-63298542 | MS.gene21613:CDS |
CTGCCAACAGGAATTGTAAA+AGG | 0.345389 | 1.3:+63298385 | None:intergenic |
GCTGAGTTTGGACTTGAGTT+AGG | 0.348418 | 1.3:+63297343 | None:intergenic |
TGTTGAGTGAATTAGTAAAA+AGG | 0.353427 | 1.3:-63298858 | MS.gene21613:CDS |
AGTAGAGTTATGAGAGAAGC+TGG | 0.362568 | 1.3:-63299075 | MS.gene21613:CDS |
TCATTGTTAACACAATCTAT+AGG | 0.381114 | 1.3:+63298895 | None:intergenic |
TTTATTTAGGTGATTTGAAA+TGG | 0.382295 | 1.3:-63298609 | MS.gene21613:CDS |
TTCCTTTGAGATATTCTCTC+TGG | 0.389830 | 1.3:+63297072 | None:intergenic |
TCAAGCTAAGGAGAGAAGTA+TGG | 0.390308 | 1.3:-63298208 | MS.gene21613:CDS |
GCCATGCTTGCAACTTCAAC+AGG | 0.392420 | 1.3:-63299390 | MS.gene21613:CDS |
AGTTGATCACTTTACTCAAA+AGG | 0.394813 | 1.3:-63296840 | MS.gene21613:CDS |
AGTGGTAGATTATGGCTTAT+GGG | 0.396440 | 1.3:-63298481 | MS.gene21613:CDS |
TGCAGCTTTCAAACGTGCTC+AGG | 0.397418 | 1.3:-63299205 | MS.gene21613:CDS |
AAGTAATCTAAACCTCTCTT+TGG | 0.399086 | 1.3:-63296645 | MS.gene21613:CDS |
AGCACTTATTTGCAAAGGTT+TGG | 0.400652 | 1.3:-63296917 | MS.gene21613:CDS |
TTGAGGAATCATCATTTCCT+AGG | 0.403714 | 1.3:+63296984 | None:intergenic |
TCCTCATAGAGTGTTCTTCA+TGG | 0.406650 | 1.3:-63296876 | MS.gene21613:CDS |
GTTAACACAATCTATAGGTT+TGG | 0.415012 | 1.3:+63298900 | None:intergenic |
TTTGTTGAAGAAACTTCAAT+TGG | 0.417218 | 1.3:+63299003 | None:intergenic |
CCCTTCCCTAGAAACTATTT+GGG | 0.418380 | 1.3:-63298416 | MS.gene21613:CDS |
GCCTAAGTTTGAACTTTGAC+AGG | 0.423851 | 1.3:-63298357 | MS.gene21613:intron |
AAGCCTCAAGTTCTTAGCCT+TGG | 0.424000 | 1.3:-63298934 | MS.gene21613:CDS |
TTAGGATTTGACAAAAGATC+TGG | 0.427273 | 1.3:+63297361 | None:intergenic |
CCTCAAGTTCTTAGCCTTGG+TGG | 0.431448 | 1.3:-63298931 | MS.gene21613:CDS |
GGCTAAGAACTTGAGGCTTA+AGG | 0.443449 | 1.3:+63298938 | None:intergenic |
AAAAGAAACACTGTTATTGT+AGG | 0.444630 | 1.3:-63298835 | MS.gene21613:CDS |
AAGTTACACAGTGGAAGATC+AGG | 0.449020 | 1.3:-63298010 | MS.gene21613:intron |
TTTGGAGATAAAGCAGGAGT+TGG | 0.452290 | 1.3:-63298165 | MS.gene21613:CDS |
GAAAAGACCAAGAGATGAGT+TGG | 0.452465 | 1.3:-63296942 | MS.gene21613:CDS |
GTGAAAAGCTATATGGGAAG+AGG | 0.452953 | 1.3:-63298640 | MS.gene21613:CDS |
CTTAGGCTTAAGCTGCCAAC+AGG | 0.452987 | 1.3:+63298373 | None:intergenic |
GTGATGGAAAGGTTTGAGAT+AGG | 0.459316 | 1.3:-63298775 | MS.gene21613:CDS |
CAAGATTCTCTGTGATGCCT+TGG | 0.460963 | 1.3:-63297251 | MS.gene21613:CDS |
TGAATCATTTCTTTATGTTG+TGG | 0.463114 | 1.3:+63297217 | None:intergenic |
GGAAGTTGAAAAGAAATTTG+TGG | 0.463470 | 1.3:-63298677 | MS.gene21613:CDS |
GATGATGATGATTGCTATGA+TGG | 0.465266 | 1.3:-63297424 | MS.gene21613:CDS |
TAAGGCTAAGTTCTTTGGAC+TGG | 0.466737 | 1.3:+63298956 | None:intergenic |
GTTGATCACTTTACTCAAAA+GGG | 0.476491 | 1.3:-63296839 | MS.gene21613:CDS |
AGCCTTGTGAAAAGCTATAT+GGG | 0.482010 | 1.3:-63298646 | MS.gene21613:CDS |
TTCTGTTGAGCATATGGTAA+TGG | 0.487719 | 1.3:-63298536 | MS.gene21613:CDS |
AGCGGAACAGATTCACCATC+AGG | 0.489515 | 1.3:+63296779 | None:intergenic |
AACATGGCTTCAAAATTGTA+AGG | 0.492394 | 1.3:-63298040 | MS.gene21613:CDS |
GAATATTGAGGACTTAATAG+TGG | 0.495946 | 1.3:+63299258 | None:intergenic |
TCCTGTTGAAGTTGCAAGCA+TGG | 0.496549 | 1.3:+63299389 | None:intergenic |
CTCATAACTCTACTAACACT+TGG | 0.499188 | 1.3:+63299084 | None:intergenic |
ACCTGTCAAAGTTCAAACTT+AGG | 0.500140 | 1.3:+63298356 | None:intergenic |
AGCATTATCATGATCTTCAA+TGG | 0.505808 | 1.3:+63296610 | None:intergenic |
TGAGATAGGTAATGTTCCTA+TGG | 0.506308 | 1.3:-63298761 | MS.gene21613:CDS |
GTGGTGAGAGTGGTAGATTA+TGG | 0.507287 | 1.3:-63298489 | MS.gene21613:CDS |
AAAAGACCAAGAGATGAGTT+GGG | 0.510626 | 1.3:-63296941 | MS.gene21613:CDS |
GTGCTTCCCAACTCATCTCT+TGG | 0.513956 | 1.3:+63296935 | None:intergenic |
ATATTCCTAAAACATATAAG+AGG | 0.515258 | 1.3:+63298709 | None:intergenic |
AAAATCATAAGCAAGAAACT+TGG | 0.516183 | 1.3:-63297123 | MS.gene21613:CDS |
GAAAGCTGCAACCAAAGCAT+TGG | 0.516890 | 1.3:+63299218 | None:intergenic |
TAATGCTGAGGGAGTAGCTA+AGG | 0.517190 | 1.3:-63298800 | MS.gene21613:CDS |
CCCAAATAGTTTCTAGGGAA+GGG | 0.525348 | 1.3:+63298416 | None:intergenic |
TTTGTGTTGATGCAGGTAAA+CGG | 0.525462 | 1.3:+63299283 | None:intergenic |
AAGCTCCCAAATAGTTTCTA+GGG | 0.525655 | 1.3:+63298411 | None:intergenic |
ACTTTGATGATCCTCTATCA+TGG | 0.525748 | 1.3:+63296664 | None:intergenic |
TAGCTAAGGGAGTGATGGAA+AGG | 0.526074 | 1.3:-63298786 | MS.gene21613:CDS |
TGAAAAGCTATATGGGAAGA+GGG | 0.530391 | 1.3:-63298639 | MS.gene21613:CDS |
GTGGTAGATTATGGCTTATG+GGG | 0.532642 | 1.3:-63298480 | MS.gene21613:CDS |
CATCATGCGCTGAAAACAAA+GGG | 0.540396 | 1.3:-63296694 | MS.gene21613:CDS |
TCCCAAATAGTTTCTAGGGA+AGG | 0.541487 | 1.3:+63298415 | None:intergenic |
AGGGAAAGAGACCATGATAG+AGG | 0.549596 | 1.3:-63296675 | MS.gene21613:CDS |
AGCTTCTTCAAGTGAAGCAG+TGG | 0.550112 | 1.3:-63297323 | MS.gene21613:CDS |
TCCATGAAGAACACTCTATG+AGG | 0.550163 | 1.3:+63296875 | None:intergenic |
TCAAGAGCTTTGCATTGAAG+AGG | 0.552190 | 1.3:+63299330 | None:intergenic |
GCAGTTCAAGCTTGCCAACA+TGG | 0.553169 | 1.3:-63298056 | MS.gene21613:CDS |
TGTACATATCTTAACTCCAT+AGG | 0.560856 | 1.3:+63298745 | None:intergenic |
TGGTGAATCTGTTCCGCTCA+AGG | 0.562981 | 1.3:-63296774 | MS.gene21613:CDS |
TCATCATGCGCTGAAAACAA+AGG | 0.563706 | 1.3:-63296695 | MS.gene21613:CDS |
TGGGAAGCACTTATTTGCAA+AGG | 0.564536 | 1.3:-63296922 | MS.gene21613:CDS |
TCTTCAAGTGAAGCAGTGGA+TGG | 0.565452 | 1.3:-63297319 | MS.gene21613:CDS |
TGAGGAATCATCATTTCCTA+GGG | 0.565890 | 1.3:+63296985 | None:intergenic |
AGAGAGTGTTTCTAATGCTG+AGG | 0.567960 | 1.3:-63298812 | MS.gene21613:CDS |
GTTAGTGGAAGTGGTGAGAG+TGG | 0.569181 | 1.3:-63298499 | MS.gene21613:CDS |
CAAGAGCTTTGCATTGAAGA+GGG | 0.570256 | 1.3:+63299331 | None:intergenic |
GTGAATCTAGCAACAAGAAG+AGG | 0.571262 | 1.3:-63299447 | MS.gene21613:CDS |
ATGAGCACTTTCTCTTCCCT+AGG | 0.572261 | 1.3:-63297001 | MS.gene21613:CDS |
AGTGGACTTTGTGTTGATGC+AGG | 0.576688 | 1.3:+63299276 | None:intergenic |
GAAGGAGTGGTTGAATATTG+AGG | 0.578893 | 1.3:+63299246 | None:intergenic |
ATCAAGAAAGCAATTGAATG+TGG | 0.579531 | 1.3:-63296815 | MS.gene21613:CDS |
GGGAGTAGCTAAGGGAGTGA+TGG | 0.580375 | 1.3:-63298791 | MS.gene21613:CDS |
TTGTGGAAACTTGTTCTCCA+AGG | 0.583160 | 1.3:+63297234 | None:intergenic |
GAGAGTGTTTCTAATGCTGA+GGG | 0.596744 | 1.3:-63298811 | MS.gene21613:CDS |
ACCAAAGCATTGGAAAGTGA+AGG | 0.598141 | 1.3:+63299228 | None:intergenic |
CCACCAAGGCTAAGAACTTG+AGG | 0.610990 | 1.3:+63298931 | None:intergenic |
TATTCTTTCAAGATCATGAG+AGG | 0.617371 | 1.3:-63299534 | None:intergenic |
TTCACTACTGAAAATGACAA+TGG | 0.618443 | 1.3:+63296748 | None:intergenic |
GATCATGATAATGCTGACAT+TGG | 0.618644 | 1.3:-63296602 | MS.gene21613:CDS |
AATGCTGAGGGAGTAGCTAA+GGG | 0.618726 | 1.3:-63298799 | MS.gene21613:CDS |
AGCCAGAGAGAATATCTCAA+AGG | 0.623199 | 1.3:-63297074 | MS.gene21613:CDS |
GAAAAGCTATATGGGAAGAG+GGG | 0.626232 | 1.3:-63298638 | MS.gene21613:CDS |
AGCATTGGAAAGTGAAGGAG+TGG | 0.626564 | 1.3:+63299233 | None:intergenic |
TTATTATACACTGAAAGTGC+TGG | 0.631798 | 1.3:-63297448 | MS.gene21613:CDS |
ATGGCACTAGCAACATGAAG+AGG | 0.635949 | 1.3:+63299408 | None:intergenic |
ATGACAATGGCATCCTTGAG+CGG | 0.637211 | 1.3:+63296761 | None:intergenic |
CTATATTCAGATCCAAAGAG+AGG | 0.642276 | 1.3:+63296633 | None:intergenic |
TCTTTCAAGATCATGAGAGG+AGG | 0.660285 | 1.3:-63299531 | None:intergenic |
GGAAGTATAACAATTCCTGA+TGG | 0.693696 | 1.3:-63296794 | MS.gene21613:CDS |
GGAAGAAAGAAGTTACACAG+TGG | 0.706086 | 1.3:-63298019 | MS.gene21613:CDS |
GCTCAGGCTCACCAAAGACG+CGG | 0.718198 | 1.3:-63299189 | MS.gene21613:CDS |
GTTTGGTGTATGAACCACCA+AGG | 0.726709 | 1.3:+63298917 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAACAAAATTACTTTAA+TGG | - | chr1.3:63298195-63298214 | MS.gene21613:CDS | 10.0% |
!! | AAAGATAAGAAAATAGAAAA+AGG | + | chr1.3:63298372-63298391 | None:intergenic | 15.0% |
!! | TAAATAATGTAAAACATAAG+AGG | + | chr1.3:63297844-63297863 | None:intergenic | 15.0% |
!!! | TTTTTCTTTTTATGTGAAAT+AGG | - | chr1.3:63298389-63298408 | MS.gene21613:CDS | 15.0% |
!! | AACTATATATATGCAAAAAC+AGG | - | chr1.3:63298342-63298361 | MS.gene21613:intron | 20.0% |
!! | ATATTCCTAAAACATATAAG+AGG | + | chr1.3:63297375-63297394 | None:intergenic | 20.0% |
!! | TATAATTTCTGAACAAGAAA+AGG | - | chr1.3:63298593-63298612 | MS.gene21613:CDS | 20.0% |
!! | TTTATTTAGGTGATTTGAAA+TGG | - | chr1.3:63297472-63297491 | MS.gene21613:intron | 20.0% |
!!! | TTTTAGGAATATTAGTAAAG+AGG | - | chr1.3:63297383-63297402 | MS.gene21613:CDS | 20.0% |
!!! | TTTTCTTGTTCAGAAATTAT+AGG | + | chr1.3:63298594-63298613 | None:intergenic | 20.0% |
! | AAAAGAAACACTGTTATTGT+AGG | - | chr1.3:63297246-63297265 | MS.gene21613:CDS | 25.0% |
! | AAAATCATAAGCAAGAAACT+TGG | - | chr1.3:63298958-63298977 | MS.gene21613:CDS | 25.0% |
! | AAATTATAGGCCAATTTAGT+TGG | + | chr1.3:63298581-63298600 | None:intergenic | 25.0% |
! | GAGATTAAAAAATTGGTTAG+TGG | - | chr1.3:63297567-63297586 | MS.gene21613:intron | 25.0% |
! | TCATTGTTAACACAATCTAT+AGG | + | chr1.3:63297189-63297208 | None:intergenic | 25.0% |
! | TGAATCATTTCTTTATGTTG+TGG | + | chr1.3:63298867-63298886 | None:intergenic | 25.0% |
! | TGTAACAACTTTATGACAAT+TGG | - | chr1.3:63299056-63299075 | MS.gene21613:CDS | 25.0% |
! | TGTTGAGTGAATTAGTAAAA+AGG | - | chr1.3:63297223-63297242 | MS.gene21613:CDS | 25.0% |
! | TTTGTTGAAGAAACTTCAAT+TGG | + | chr1.3:63297081-63297100 | None:intergenic | 25.0% |
!! | TATAATAACTCACACTCTTT+TGG | + | chr1.3:63298621-63298640 | None:intergenic | 25.0% |
!! | TTATTCAATGACTTGACTTT+TGG | - | chr1.3:63297898-63297917 | MS.gene21613:intron | 25.0% |
!! | TTCAGTGTGAAATTTTTGTA+CGG | - | chr1.3:63298294-63298313 | MS.gene21613:intron | 25.0% |
!!! | GAAACTTGGATATTTTTTCT+TGG | - | chr1.3:63298972-63298991 | MS.gene21613:CDS | 25.0% |
!!! | GGTAATGGAGATTAAAAAAT+TGG | - | chr1.3:63297560-63297579 | MS.gene21613:intron | 25.0% |
!!! | TTATAGTGATTTTCAAGCTA+AGG | - | chr1.3:63297861-63297880 | MS.gene21613:intron | 25.0% |
AAAAAATTGGTTAGTGGAAG+TGG | - | chr1.3:63297573-63297592 | MS.gene21613:intron | 30.0% | |
AACATGGCTTCAAAATTGTA+AGG | - | chr1.3:63298041-63298060 | MS.gene21613:CDS | 30.0% | |
AAGTAATCTAAACCTCTCTT+TGG | - | chr1.3:63299436-63299455 | MS.gene21613:CDS | 30.0% | |
AATAGTCTCATACACTTACT+TGG | - | chr1.3:63298104-63298123 | MS.gene21613:CDS | 30.0% | |
AGCATTATCATGATCTTCAA+TGG | + | chr1.3:63299474-63299493 | None:intergenic | 30.0% | |
AGTTGATCACTTTACTCAAA+AGG | - | chr1.3:63299241-63299260 | MS.gene21613:CDS | 30.0% | |
ATAGGAAAATGCAAGACTTA+AGG | - | chr1.3:63298407-63298426 | MS.gene21613:CDS | 30.0% | |
ATCAAGAAAGCAATTGAATG+TGG | - | chr1.3:63299266-63299285 | MS.gene21613:CDS | 30.0% | |
CAAGTGATGAAAAATCCAAA+AGG | - | chr1.3:63299117-63299136 | MS.gene21613:CDS | 30.0% | |
CAAGTTACTGTGAACAAAAA+AGG | - | chr1.3:63297511-63297530 | MS.gene21613:intron | 30.0% | |
GAATATTGAGGACTTAATAG+TGG | + | chr1.3:63296826-63296845 | None:intergenic | 30.0% | |
GGAAGTTGAAAAGAAATTTG+TGG | - | chr1.3:63297404-63297423 | MS.gene21613:CDS | 30.0% | |
GTTAACACAATCTATAGGTT+TGG | + | chr1.3:63297184-63297203 | None:intergenic | 30.0% | |
GTTGATCACTTTACTCAAAA+GGG | - | chr1.3:63299242-63299261 | MS.gene21613:CDS | 30.0% | |
TCATTCCTGATCTACAAAAA+AGG | + | chr1.3:63298908-63298927 | None:intergenic | 30.0% | |
TGTACATATCTTAACTCCAT+AGG | + | chr1.3:63297339-63297358 | None:intergenic | 30.0% | |
TTAGGATTTGACAAAAGATC+TGG | + | chr1.3:63298723-63298742 | None:intergenic | 30.0% | |
TTCACTACTGAAAATGACAA+TGG | + | chr1.3:63299336-63299355 | None:intergenic | 30.0% | |
! | AGAGGGGTTATTCTTTATTT+AGG | - | chr1.3:63297459-63297478 | MS.gene21613:CDS | 30.0% |
! | GTCTTCCTCTTATATGTTTT+AGG | - | chr1.3:63297367-63297386 | MS.gene21613:CDS | 30.0% |
! | TTATTATACACTGAAAGTGC+TGG | - | chr1.3:63298633-63298652 | MS.gene21613:CDS | 30.0% |
! | TTTGGATTTTTCATCACTTG+AGG | + | chr1.3:63299117-63299136 | None:intergenic | 30.0% |
!! | GAACTAGCTAAAGTTGTTTT+TGG | - | chr1.3:63299029-63299048 | MS.gene21613:CDS | 30.0% |
!! | TGAAATGGTTGTTTGAGTTT+TGG | - | chr1.3:63297487-63297506 | MS.gene21613:intron | 30.0% |
!! | TTTGACAAAAGATCTGGTTT+TGG | + | chr1.3:63298717-63298736 | None:intergenic | 30.0% |
!!! | GTTAGACTTTTTTTCAAGTG+AGG | + | chr1.3:63298547-63298566 | None:intergenic | 30.0% |
!!! | TTACAATTTTGAAGCCATGT+TGG | + | chr1.3:63298042-63298061 | None:intergenic | 30.0% |
AAAAGACCAAGAGATGAGTT+GGG | - | chr1.3:63299140-63299159 | MS.gene21613:CDS | 35.0% | |
AAGCTCCCAAATAGTTTCTA+GGG | + | chr1.3:63297673-63297692 | None:intergenic | 35.0% | |
ACCTGTCAAAGTTCAAACTT+AGG | + | chr1.3:63297728-63297747 | None:intergenic | 35.0% | |
AGATCAGGAATGAGAAAAAG+AGG | - | chr1.3:63298915-63298934 | MS.gene21613:CDS | 35.0% | |
AGCACTTATTTGCAAAGGTT+TGG | - | chr1.3:63299164-63299183 | MS.gene21613:CDS | 35.0% | |
AGTGGTAGATTATGGCTTAT+GGG | - | chr1.3:63297600-63297619 | MS.gene21613:intron | 35.0% | |
CTATATTCAGATCCAAAGAG+AGG | + | chr1.3:63299451-63299470 | None:intergenic | 35.0% | |
CTATTGTTCTGTTGAGCATA+TGG | - | chr1.3:63297539-63297558 | MS.gene21613:intron | 35.0% | |
CTCATAACTCTACTAACACT+TGG | + | chr1.3:63297000-63297019 | None:intergenic | 35.0% | |
CTTGTTTGTCAAGAATCGAA+GGG | + | chr1.3:63298479-63298498 | None:intergenic | 35.0% | |
GATCAGGAATGAGAAAAAGA+GGG | - | chr1.3:63298916-63298935 | MS.gene21613:CDS | 35.0% | |
TCAAGTGAGGAAAATGAAGT+TGG | + | chr1.3:63298534-63298553 | None:intergenic | 35.0% | |
TCCAACAAAGCCAACTAAAT+TGG | - | chr1.3:63298568-63298587 | MS.gene21613:CDS | 35.0% | |
TGAAAAGCTATATGGGAAGA+GGG | - | chr1.3:63297442-63297461 | MS.gene21613:CDS | 35.0% | |
TGAGATAGGTAATGTTCCTA+TGG | - | chr1.3:63297320-63297339 | MS.gene21613:CDS | 35.0% | |
TGAGGAATCATCATTTCCTA+GGG | + | chr1.3:63299099-63299118 | None:intergenic | 35.0% | |
TTAAGGATCTCTGCAAGAAA+TGG | - | chr1.3:63298424-63298443 | MS.gene21613:CDS | 35.0% | |
TTCTGTTGAGCATATGGTAA+TGG | - | chr1.3:63297545-63297564 | MS.gene21613:intron | 35.0% | |
TTGAGGAATCATCATTTCCT+AGG | + | chr1.3:63299100-63299119 | None:intergenic | 35.0% | |
! | AAGCCTTGTGAAAAGCTATA+TGG | - | chr1.3:63297434-63297453 | MS.gene21613:CDS | 35.0% |
! | ACTTTGATGATCCTCTATCA+TGG | + | chr1.3:63299420-63299439 | None:intergenic | 35.0% |
! | AGCCTTGTGAAAAGCTATAT+GGG | - | chr1.3:63297435-63297454 | MS.gene21613:CDS | 35.0% |
! | CATCCTTTTACAATTCCTGT+TGG | - | chr1.3:63297693-63297712 | MS.gene21613:intron | 35.0% |
! | GATCATGATAATGCTGACAT+TGG | - | chr1.3:63299479-63299498 | MS.gene21613:CDS | 35.0% |
! | GATGATGATGATTGCTATGA+TGG | - | chr1.3:63298657-63298676 | MS.gene21613:CDS | 35.0% |
! | GGAAGTATAACAATTCCTGA+TGG | - | chr1.3:63299287-63299306 | MS.gene21613:CDS | 35.0% |
! | TCTTGTTTGTCAAGAATCGA+AGG | + | chr1.3:63298480-63298499 | None:intergenic | 35.0% |
! | TTCCCATATAGCTTTTCACA+AGG | + | chr1.3:63297440-63297459 | None:intergenic | 35.0% |
! | TTTGTGTTGATGCAGGTAAA+CGG | + | chr1.3:63296801-63296820 | None:intergenic | 35.0% |
!! | ATCTCTTGGTCTTTTCCTTT+TGG | + | chr1.3:63299135-63299154 | None:intergenic | 35.0% |
!! | GAAAATGAAGTTGGTGATGA+AGG | + | chr1.3:63298525-63298544 | None:intergenic | 35.0% |
!! | TTCCTTTGAGATATTCTCTC+TGG | + | chr1.3:63299012-63299031 | None:intergenic | 35.0% |
!! | TTGACTTTTGGAGATAAAGC+AGG | - | chr1.3:63297910-63297929 | MS.gene21613:intron | 35.0% |
!!! | ACTGTCCTTTTTTGTAGATC+AGG | - | chr1.3:63298900-63298919 | MS.gene21613:CDS | 35.0% |
!!! | GGTTTTGGAACATTTCTATG+TGG | + | chr1.3:63298702-63298721 | None:intergenic | 35.0% |
AAGTTACACAGTGGAAGATC+AGG | - | chr1.3:63298071-63298090 | MS.gene21613:CDS | 40.0% | |
ACCCTTCCCTAGAAACTATT+TGG | - | chr1.3:63297664-63297683 | MS.gene21613:intron | 40.0% | |
AGCCAGAGAGAATATCTCAA+AGG | - | chr1.3:63299007-63299026 | MS.gene21613:CDS | 40.0% | |
AGGCTTAAGGCTAAGTTCTT+TGG | + | chr1.3:63297133-63297152 | None:intergenic | 40.0% | |
AGTAGAGTTATGAGAGAAGC+TGG | - | chr1.3:63297006-63297025 | MS.gene21613:CDS | 40.0% | |
AGTCGTAAGTTCGTAACTGT+TGG | + | chr1.3:63298272-63298291 | None:intergenic | 40.0% | |
CAAGAGCTTTGCATTGAAGA+GGG | + | chr1.3:63296753-63296772 | None:intergenic | 40.0% | |
CATCATGCGCTGAAAACAAA+GGG | - | chr1.3:63299387-63299406 | MS.gene21613:CDS | 40.0% | |
CCCTTCCCTAGAAACTATTT+GGG | - | chr1.3:63297665-63297684 | MS.gene21613:intron | 40.0% | |
CTGCCAACAGGAATTGTAAA+AGG | + | chr1.3:63297699-63297718 | None:intergenic | 40.0% | |
GAAAAGACCAAGAGATGAGT+TGG | - | chr1.3:63299139-63299158 | MS.gene21613:CDS | 40.0% | |
GAAAAGCTATATGGGAAGAG+GGG | - | chr1.3:63297443-63297462 | MS.gene21613:CDS | 40.0% | |
GAAGCTCCCAAATAGTTTCT+AGG | + | chr1.3:63297674-63297693 | None:intergenic | 40.0% | |
GAAGGAGTGGTTGAATATTG+AGG | + | chr1.3:63296838-63296857 | None:intergenic | 40.0% | |
GAGTGGTAGATTATGGCTTA+TGG | - | chr1.3:63297599-63297618 | MS.gene21613:intron | 40.0% | |
GCCTAAGTTTGAACTTTGAC+AGG | - | chr1.3:63297724-63297743 | MS.gene21613:intron | 40.0% | |
GGAAGAAAGAAGTTACACAG+TGG | - | chr1.3:63298062-63298081 | MS.gene21613:CDS | 40.0% | |
GTGAAAAGCTATATGGGAAG+AGG | - | chr1.3:63297441-63297460 | MS.gene21613:CDS | 40.0% | |
GTGAATCTAGCAACAAGAAG+AGG | - | chr1.3:63296634-63296653 | MS.gene21613:CDS | 40.0% | |
GTGGTAGATTATGGCTTATG+GGG | - | chr1.3:63297601-63297620 | MS.gene21613:intron | 40.0% | |
TAAGGCTAAGTTCTTTGGAC+TGG | + | chr1.3:63297128-63297147 | None:intergenic | 40.0% | |
TCAAGAGCTTTGCATTGAAG+AGG | + | chr1.3:63296754-63296773 | None:intergenic | 40.0% | |
TCAAGCTAAGGAGAGAAGTA+TGG | - | chr1.3:63297873-63297892 | MS.gene21613:intron | 40.0% | |
TCACTTGAAGAAGCTGAGTT+TGG | + | chr1.3:63298753-63298772 | None:intergenic | 40.0% | |
TCATCATGCGCTGAAAACAA+AGG | - | chr1.3:63299386-63299405 | MS.gene21613:CDS | 40.0% | |
TCCATGAAGAACACTCTATG+AGG | + | chr1.3:63299209-63299228 | None:intergenic | 40.0% | |
TCCTTCACTTTCCAATGCTT+TGG | - | chr1.3:63296852-63296871 | MS.gene21613:CDS | 40.0% | |
TTTGGAGATAAAGCAGGAGT+TGG | - | chr1.3:63297916-63297935 | MS.gene21613:intron | 40.0% | |
! | CCCAAATAGTTTCTAGGGAA+GGG | + | chr1.3:63297668-63297687 | None:intergenic | 40.0% |
! | GTGATGGAAAGGTTTGAGAT+AGG | - | chr1.3:63297306-63297325 | MS.gene21613:CDS | 40.0% |
! | TCCCAAATAGTTTCTAGGGA+AGG | + | chr1.3:63297669-63297688 | None:intergenic | 40.0% |
! | TCCTCATAGAGTGTTCTTCA+TGG | - | chr1.3:63299205-63299224 | MS.gene21613:CDS | 40.0% |
! | TTGTGGAAACTTGTTCTCCA+AGG | + | chr1.3:63298850-63298869 | None:intergenic | 40.0% |
! | TTTTCAGCGCATGATGATTG+TGG | + | chr1.3:63299383-63299402 | None:intergenic | 40.0% |
!! | ACCAAAGCATTGGAAAGTGA+AGG | + | chr1.3:63296856-63296875 | None:intergenic | 40.0% |
!! | AGAGAGTGTTTCTAATGCTG+AGG | - | chr1.3:63297269-63297288 | MS.gene21613:CDS | 40.0% |
!! | GAGAGTGTTTCTAATGCTGA+GGG | - | chr1.3:63297270-63297289 | MS.gene21613:CDS | 40.0% |
!! | GCCAATTTAGTTGGCTTTGT+TGG | + | chr1.3:63298572-63298591 | None:intergenic | 40.0% |
!! | TGGGAAGCACTTATTTGCAA+AGG | - | chr1.3:63299159-63299178 | MS.gene21613:CDS | 40.0% |
AAGCCTCAAGTTCTTAGCCT+TGG | - | chr1.3:63297147-63297166 | MS.gene21613:CDS | 45.0% | |
AATGCTGAGGGAGTAGCTAA+GGG | - | chr1.3:63297282-63297301 | MS.gene21613:CDS | 45.0% | |
AGCTTCTTCAAGTGAAGCAG+TGG | - | chr1.3:63298758-63298777 | MS.gene21613:CDS | 45.0% | |
AGGGAAAGAGACCATGATAG+AGG | - | chr1.3:63299406-63299425 | MS.gene21613:CDS | 45.0% | |
ATGACAATGGCATCCTTGAG+CGG | + | chr1.3:63299323-63299342 | None:intergenic | 45.0% | |
ATGAGCACTTTCTCTTCCCT+AGG | - | chr1.3:63299080-63299099 | MS.gene21613:CDS | 45.0% | |
ATGGCACTAGCAACATGAAG+AGG | + | chr1.3:63296676-63296695 | None:intergenic | 45.0% | |
CAAGATTCTCTGTGATGCCT+TGG | - | chr1.3:63298830-63298849 | MS.gene21613:CDS | 45.0% | |
GAAAGCTGCAACCAAAGCAT+TGG | + | chr1.3:63296866-63296885 | None:intergenic | 45.0% | |
GCTGAGTTTGGACTTGAGTT+AGG | + | chr1.3:63298741-63298760 | None:intergenic | 45.0% | |
GGCTAAGAACTTGAGGCTTA+AGG | + | chr1.3:63297146-63297165 | None:intergenic | 45.0% | |
GTGGTGAGAGTGGTAGATTA+TGG | - | chr1.3:63297592-63297611 | MS.gene21613:intron | 45.0% | |
TAATGCTGAGGGAGTAGCTA+AGG | - | chr1.3:63297281-63297300 | MS.gene21613:CDS | 45.0% | |
TCCTGTTGAAGTTGCAAGCA+TGG | + | chr1.3:63296695-63296714 | None:intergenic | 45.0% | |
TCTTCAAGTGAAGCAGTGGA+TGG | - | chr1.3:63298762-63298781 | MS.gene21613:CDS | 45.0% | |
! | AGCATTGGAAAGTGAAGGAG+TGG | + | chr1.3:63296851-63296870 | None:intergenic | 45.0% |
! | AGTGGACTTTGTGTTGATGC+AGG | + | chr1.3:63296808-63296827 | None:intergenic | 45.0% |
! | GTCGACAGCGTAAAGCATTT+AGG | + | chr1.3:63298175-63298194 | None:intergenic | 45.0% |
! | TAGCTAAGGGAGTGATGGAA+AGG | - | chr1.3:63297295-63297314 | MS.gene21613:CDS | 45.0% |
!! | GTTTGGTGTATGAACCACCA+AGG | + | chr1.3:63297167-63297186 | None:intergenic | 45.0% |
AGCGGAACAGATTCACCATC+AGG | + | chr1.3:63299305-63299324 | None:intergenic | 50.0% | |
CCACCAAGGCTAAGAACTTG+AGG | + | chr1.3:63297153-63297172 | None:intergenic | 50.0% | |
CTTAGGCTTAAGCTGCCAAC+AGG | + | chr1.3:63297711-63297730 | None:intergenic | 50.0% | |
GCAGTTCAAGCTTGCCAACA+TGG | - | chr1.3:63298025-63298044 | MS.gene21613:CDS | 50.0% | |
GCCATGCTTGCAACTTCAAC+AGG | - | chr1.3:63296691-63296710 | MS.gene21613:CDS | 50.0% | |
GTGCTTCCCAACTCATCTCT+TGG | + | chr1.3:63299149-63299168 | None:intergenic | 50.0% | |
GTTAGTGGAAGTGGTGAGAG+TGG | - | chr1.3:63297582-63297601 | MS.gene21613:intron | 50.0% | |
TGCAGCTTTCAAACGTGCTC+AGG | - | chr1.3:63296876-63296895 | MS.gene21613:CDS | 50.0% | |
TGGTGAATCTGTTCCGCTCA+AGG | - | chr1.3:63299307-63299326 | MS.gene21613:CDS | 50.0% | |
!! | CCTCAAGTTCTTAGCCTTGG+TGG | - | chr1.3:63297150-63297169 | MS.gene21613:CDS | 50.0% |
GGGAGTAGCTAAGGGAGTGA+TGG | - | chr1.3:63297290-63297309 | MS.gene21613:CDS | 55.0% | |
TCTCGATCGTTCCGCGTCTT+TGG | + | chr1.3:63296906-63296925 | None:intergenic | 55.0% | |
GCTCAGGCTCACCAAAGACG+CGG | - | chr1.3:63296892-63296911 | MS.gene21613:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 63296559 | 63299544 | 63296559 | ID=MS.gene21613 |
chr1.3 | mRNA | 63296559 | 63299544 | 63296559 | ID=MS.gene21613.t1;Parent=MS.gene21613 |
chr1.3 | exon | 63298358 | 63299544 | 63298358 | ID=MS.gene21613.t1.exon1;Parent=MS.gene21613.t1 |
chr1.3 | CDS | 63298358 | 63299544 | 63298358 | ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1 |
chr1.3 | exon | 63298011 | 63298236 | 63298011 | ID=MS.gene21613.t1.exon2;Parent=MS.gene21613.t1 |
chr1.3 | CDS | 63298011 | 63298236 | 63298011 | ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1 |
chr1.3 | exon | 63296559 | 63297488 | 63296559 | ID=MS.gene21613.t1.exon3;Parent=MS.gene21613.t1 |
chr1.3 | CDS | 63296559 | 63297488 | 63296559 | ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1 |
Gene Sequence |
Protein sequence |