AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21613


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21613.t1 MTR_1g090640 92.141 509 27 2 2 510 1 496 0.0 950
MS.gene21613.t1 MTR_1g090640 93.312 314 19 2 469 780 536 849 1.84e-177 531
MS.gene21613.t1 MTR_1g057150 47.236 832 359 25 2 780 1 805 0.0 621
MS.gene21613.t1 MTR_2g038200 41.752 491 231 16 2 458 1 470 7.10e-95 318
MS.gene21613.t1 MTR_4g129230 36.399 511 260 18 2 461 1 497 3.82e-76 266
MS.gene21613.t1 MTR_4g127290 63.068 176 50 5 2 168 1 170 4.83e-54 201
MS.gene21613.t1 MTR_1183s0010 59.155 142 45 3 642 778 148 281 1.80e-42 156
MS.gene21613.t1 MTR_1183s0010 70.423 71 18 2 100 168 28 97 6.04e-19 88.6
MS.gene21613.t1 MTR_3g464150 29.645 479 279 14 12 458 10 462 4.15e-35 144
MS.gene21613.t1 MTR_1384s0010 54.762 126 32 4 2 124 1 104 6.89e-30 114
MS.gene21613.t1 MTR_5g071060 30.583 412 212 16 12 390 10 380 2.10e-27 119
MS.gene21613.t1 MTR_5g071060 30.583 412 212 16 12 390 10 380 2.17e-27 119
MS.gene21613.t1 MTR_3g070850 27.664 488 272 19 12 458 10 457 1.66e-26 117
MS.gene21613.t1 MTR_4g109450 27.551 294 184 10 25 314 17 285 1.21e-16 85.1
MS.gene21613.t1 MTR_4g109450 27.551 294 184 10 25 314 17 285 1.26e-16 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21613.t1 AT3G52490 44.668 844 366 22 2 778 1 810 0.0 593
MS.gene21613.t1 AT5G57130 30.397 931 428 33 2 762 1 881 1.02e-87 299
MS.gene21613.t1 AT4G29920 36.923 520 251 14 2 458 1 506 8.24e-85 291
MS.gene21613.t1 AT4G29920 36.944 517 252 14 2 458 1 503 1.16e-84 290
MS.gene21613.t1 AT4G30350 31.432 789 402 28 2 719 1 721 2.15e-79 274
MS.gene21613.t1 AT5G57710 39.235 497 226 20 2 461 1 458 1.25e-78 273
MS.gene21613.t1 AT2G40130 26.913 758 446 25 12 729 10 699 2.55e-43 169
MS.gene21613.t1 AT2G29970 29.607 483 276 15 12 463 10 459 4.52e-42 166
MS.gene21613.t1 AT2G40130 31.234 397 224 13 12 383 10 382 2.66e-35 144
MS.gene21613.t1 AT1G07200 27.362 508 279 17 12 467 10 479 3.53e-33 138
MS.gene21613.t1 AT1G74310 26.129 310 194 11 12 314 4 285 3.12e-16 83.6
MS.gene21613.t1 AT1G74310 26.129 310 194 11 12 314 4 285 3.33e-16 83.6

Find 118 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCCCTAGAAACTATT+TGG 0.153510 1.3:-63298417 MS.gene21613:CDS
AGAGGGGTTATTCTTTATTT+AGG 0.203554 1.3:-63298622 MS.gene21613:CDS
TTATTCAATGACTTGACTTT+TGG 0.237281 1.3:-63298183 MS.gene21613:CDS
TCTCGATCGTTCCGCGTCTT+TGG 0.250193 1.3:+63299178 None:intergenic
AGGCTTAAGGCTAAGTTCTT+TGG 0.260826 1.3:+63298951 None:intergenic
GAGTGGTAGATTATGGCTTA+TGG 0.282735 1.3:-63298482 MS.gene21613:CDS
TCCTTCACTTTCCAATGCTT+TGG 0.297130 1.3:-63299229 MS.gene21613:CDS
TATAATAACTCACACTCTTT+TGG 0.298041 1.3:+63297463 None:intergenic
AAGCCTTGTGAAAAGCTATA+TGG 0.299255 1.3:-63298647 MS.gene21613:CDS
TCACTTGAAGAAGCTGAGTT+TGG 0.312758 1.3:+63297331 None:intergenic
GAAGCTCCCAAATAGTTTCT+AGG 0.313524 1.3:+63298410 None:intergenic
TGAAATGGTTGTTTGAGTTT+TGG 0.332695 1.3:-63298594 MS.gene21613:CDS
TTTGACAAAAGATCTGGTTT+TGG 0.333075 1.3:+63297367 None:intergenic
TGTAACAACTTTATGACAAT+TGG 0.336252 1.3:-63297025 MS.gene21613:CDS
CTATTGTTCTGTTGAGCATA+TGG 0.340911 1.3:-63298542 MS.gene21613:CDS
CTGCCAACAGGAATTGTAAA+AGG 0.345389 1.3:+63298385 None:intergenic
GCTGAGTTTGGACTTGAGTT+AGG 0.348418 1.3:+63297343 None:intergenic
TGTTGAGTGAATTAGTAAAA+AGG 0.353427 1.3:-63298858 MS.gene21613:CDS
AGTAGAGTTATGAGAGAAGC+TGG 0.362568 1.3:-63299075 MS.gene21613:CDS
TCATTGTTAACACAATCTAT+AGG 0.381114 1.3:+63298895 None:intergenic
TTTATTTAGGTGATTTGAAA+TGG 0.382295 1.3:-63298609 MS.gene21613:CDS
TTCCTTTGAGATATTCTCTC+TGG 0.389830 1.3:+63297072 None:intergenic
TCAAGCTAAGGAGAGAAGTA+TGG 0.390308 1.3:-63298208 MS.gene21613:CDS
GCCATGCTTGCAACTTCAAC+AGG 0.392420 1.3:-63299390 MS.gene21613:CDS
AGTTGATCACTTTACTCAAA+AGG 0.394813 1.3:-63296840 MS.gene21613:CDS
AGTGGTAGATTATGGCTTAT+GGG 0.396440 1.3:-63298481 MS.gene21613:CDS
TGCAGCTTTCAAACGTGCTC+AGG 0.397418 1.3:-63299205 MS.gene21613:CDS
AAGTAATCTAAACCTCTCTT+TGG 0.399086 1.3:-63296645 MS.gene21613:CDS
AGCACTTATTTGCAAAGGTT+TGG 0.400652 1.3:-63296917 MS.gene21613:CDS
TTGAGGAATCATCATTTCCT+AGG 0.403714 1.3:+63296984 None:intergenic
TCCTCATAGAGTGTTCTTCA+TGG 0.406650 1.3:-63296876 MS.gene21613:CDS
GTTAACACAATCTATAGGTT+TGG 0.415012 1.3:+63298900 None:intergenic
TTTGTTGAAGAAACTTCAAT+TGG 0.417218 1.3:+63299003 None:intergenic
CCCTTCCCTAGAAACTATTT+GGG 0.418380 1.3:-63298416 MS.gene21613:CDS
GCCTAAGTTTGAACTTTGAC+AGG 0.423851 1.3:-63298357 MS.gene21613:intron
AAGCCTCAAGTTCTTAGCCT+TGG 0.424000 1.3:-63298934 MS.gene21613:CDS
TTAGGATTTGACAAAAGATC+TGG 0.427273 1.3:+63297361 None:intergenic
CCTCAAGTTCTTAGCCTTGG+TGG 0.431448 1.3:-63298931 MS.gene21613:CDS
GGCTAAGAACTTGAGGCTTA+AGG 0.443449 1.3:+63298938 None:intergenic
AAAAGAAACACTGTTATTGT+AGG 0.444630 1.3:-63298835 MS.gene21613:CDS
AAGTTACACAGTGGAAGATC+AGG 0.449020 1.3:-63298010 MS.gene21613:intron
TTTGGAGATAAAGCAGGAGT+TGG 0.452290 1.3:-63298165 MS.gene21613:CDS
GAAAAGACCAAGAGATGAGT+TGG 0.452465 1.3:-63296942 MS.gene21613:CDS
GTGAAAAGCTATATGGGAAG+AGG 0.452953 1.3:-63298640 MS.gene21613:CDS
CTTAGGCTTAAGCTGCCAAC+AGG 0.452987 1.3:+63298373 None:intergenic
GTGATGGAAAGGTTTGAGAT+AGG 0.459316 1.3:-63298775 MS.gene21613:CDS
CAAGATTCTCTGTGATGCCT+TGG 0.460963 1.3:-63297251 MS.gene21613:CDS
TGAATCATTTCTTTATGTTG+TGG 0.463114 1.3:+63297217 None:intergenic
GGAAGTTGAAAAGAAATTTG+TGG 0.463470 1.3:-63298677 MS.gene21613:CDS
GATGATGATGATTGCTATGA+TGG 0.465266 1.3:-63297424 MS.gene21613:CDS
TAAGGCTAAGTTCTTTGGAC+TGG 0.466737 1.3:+63298956 None:intergenic
GTTGATCACTTTACTCAAAA+GGG 0.476491 1.3:-63296839 MS.gene21613:CDS
AGCCTTGTGAAAAGCTATAT+GGG 0.482010 1.3:-63298646 MS.gene21613:CDS
TTCTGTTGAGCATATGGTAA+TGG 0.487719 1.3:-63298536 MS.gene21613:CDS
AGCGGAACAGATTCACCATC+AGG 0.489515 1.3:+63296779 None:intergenic
AACATGGCTTCAAAATTGTA+AGG 0.492394 1.3:-63298040 MS.gene21613:CDS
GAATATTGAGGACTTAATAG+TGG 0.495946 1.3:+63299258 None:intergenic
TCCTGTTGAAGTTGCAAGCA+TGG 0.496549 1.3:+63299389 None:intergenic
CTCATAACTCTACTAACACT+TGG 0.499188 1.3:+63299084 None:intergenic
ACCTGTCAAAGTTCAAACTT+AGG 0.500140 1.3:+63298356 None:intergenic
AGCATTATCATGATCTTCAA+TGG 0.505808 1.3:+63296610 None:intergenic
TGAGATAGGTAATGTTCCTA+TGG 0.506308 1.3:-63298761 MS.gene21613:CDS
GTGGTGAGAGTGGTAGATTA+TGG 0.507287 1.3:-63298489 MS.gene21613:CDS
AAAAGACCAAGAGATGAGTT+GGG 0.510626 1.3:-63296941 MS.gene21613:CDS
GTGCTTCCCAACTCATCTCT+TGG 0.513956 1.3:+63296935 None:intergenic
ATATTCCTAAAACATATAAG+AGG 0.515258 1.3:+63298709 None:intergenic
AAAATCATAAGCAAGAAACT+TGG 0.516183 1.3:-63297123 MS.gene21613:CDS
GAAAGCTGCAACCAAAGCAT+TGG 0.516890 1.3:+63299218 None:intergenic
TAATGCTGAGGGAGTAGCTA+AGG 0.517190 1.3:-63298800 MS.gene21613:CDS
CCCAAATAGTTTCTAGGGAA+GGG 0.525348 1.3:+63298416 None:intergenic
TTTGTGTTGATGCAGGTAAA+CGG 0.525462 1.3:+63299283 None:intergenic
AAGCTCCCAAATAGTTTCTA+GGG 0.525655 1.3:+63298411 None:intergenic
ACTTTGATGATCCTCTATCA+TGG 0.525748 1.3:+63296664 None:intergenic
TAGCTAAGGGAGTGATGGAA+AGG 0.526074 1.3:-63298786 MS.gene21613:CDS
TGAAAAGCTATATGGGAAGA+GGG 0.530391 1.3:-63298639 MS.gene21613:CDS
GTGGTAGATTATGGCTTATG+GGG 0.532642 1.3:-63298480 MS.gene21613:CDS
CATCATGCGCTGAAAACAAA+GGG 0.540396 1.3:-63296694 MS.gene21613:CDS
TCCCAAATAGTTTCTAGGGA+AGG 0.541487 1.3:+63298415 None:intergenic
AGGGAAAGAGACCATGATAG+AGG 0.549596 1.3:-63296675 MS.gene21613:CDS
AGCTTCTTCAAGTGAAGCAG+TGG 0.550112 1.3:-63297323 MS.gene21613:CDS
TCCATGAAGAACACTCTATG+AGG 0.550163 1.3:+63296875 None:intergenic
TCAAGAGCTTTGCATTGAAG+AGG 0.552190 1.3:+63299330 None:intergenic
GCAGTTCAAGCTTGCCAACA+TGG 0.553169 1.3:-63298056 MS.gene21613:CDS
TGTACATATCTTAACTCCAT+AGG 0.560856 1.3:+63298745 None:intergenic
TGGTGAATCTGTTCCGCTCA+AGG 0.562981 1.3:-63296774 MS.gene21613:CDS
TCATCATGCGCTGAAAACAA+AGG 0.563706 1.3:-63296695 MS.gene21613:CDS
TGGGAAGCACTTATTTGCAA+AGG 0.564536 1.3:-63296922 MS.gene21613:CDS
TCTTCAAGTGAAGCAGTGGA+TGG 0.565452 1.3:-63297319 MS.gene21613:CDS
TGAGGAATCATCATTTCCTA+GGG 0.565890 1.3:+63296985 None:intergenic
AGAGAGTGTTTCTAATGCTG+AGG 0.567960 1.3:-63298812 MS.gene21613:CDS
GTTAGTGGAAGTGGTGAGAG+TGG 0.569181 1.3:-63298499 MS.gene21613:CDS
CAAGAGCTTTGCATTGAAGA+GGG 0.570256 1.3:+63299331 None:intergenic
GTGAATCTAGCAACAAGAAG+AGG 0.571262 1.3:-63299447 MS.gene21613:CDS
ATGAGCACTTTCTCTTCCCT+AGG 0.572261 1.3:-63297001 MS.gene21613:CDS
AGTGGACTTTGTGTTGATGC+AGG 0.576688 1.3:+63299276 None:intergenic
GAAGGAGTGGTTGAATATTG+AGG 0.578893 1.3:+63299246 None:intergenic
ATCAAGAAAGCAATTGAATG+TGG 0.579531 1.3:-63296815 MS.gene21613:CDS
GGGAGTAGCTAAGGGAGTGA+TGG 0.580375 1.3:-63298791 MS.gene21613:CDS
TTGTGGAAACTTGTTCTCCA+AGG 0.583160 1.3:+63297234 None:intergenic
GAGAGTGTTTCTAATGCTGA+GGG 0.596744 1.3:-63298811 MS.gene21613:CDS
ACCAAAGCATTGGAAAGTGA+AGG 0.598141 1.3:+63299228 None:intergenic
CCACCAAGGCTAAGAACTTG+AGG 0.610990 1.3:+63298931 None:intergenic
TATTCTTTCAAGATCATGAG+AGG 0.617371 1.3:-63299534 None:intergenic
TTCACTACTGAAAATGACAA+TGG 0.618443 1.3:+63296748 None:intergenic
GATCATGATAATGCTGACAT+TGG 0.618644 1.3:-63296602 MS.gene21613:CDS
AATGCTGAGGGAGTAGCTAA+GGG 0.618726 1.3:-63298799 MS.gene21613:CDS
AGCCAGAGAGAATATCTCAA+AGG 0.623199 1.3:-63297074 MS.gene21613:CDS
GAAAAGCTATATGGGAAGAG+GGG 0.626232 1.3:-63298638 MS.gene21613:CDS
AGCATTGGAAAGTGAAGGAG+TGG 0.626564 1.3:+63299233 None:intergenic
TTATTATACACTGAAAGTGC+TGG 0.631798 1.3:-63297448 MS.gene21613:CDS
ATGGCACTAGCAACATGAAG+AGG 0.635949 1.3:+63299408 None:intergenic
ATGACAATGGCATCCTTGAG+CGG 0.637211 1.3:+63296761 None:intergenic
CTATATTCAGATCCAAAGAG+AGG 0.642276 1.3:+63296633 None:intergenic
TCTTTCAAGATCATGAGAGG+AGG 0.660285 1.3:-63299531 None:intergenic
GGAAGTATAACAATTCCTGA+TGG 0.693696 1.3:-63296794 MS.gene21613:CDS
GGAAGAAAGAAGTTACACAG+TGG 0.706086 1.3:-63298019 MS.gene21613:CDS
GCTCAGGCTCACCAAAGACG+CGG 0.718198 1.3:-63299189 MS.gene21613:CDS
GTTTGGTGTATGAACCACCA+AGG 0.726709 1.3:+63298917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAAATTACTTTAA+TGG - chr1.3:63298195-63298214 MS.gene21613:CDS 10.0%
!! AAAGATAAGAAAATAGAAAA+AGG + chr1.3:63298372-63298391 None:intergenic 15.0%
!! TAAATAATGTAAAACATAAG+AGG + chr1.3:63297844-63297863 None:intergenic 15.0%
!!! TTTTTCTTTTTATGTGAAAT+AGG - chr1.3:63298389-63298408 MS.gene21613:CDS 15.0%
!! AACTATATATATGCAAAAAC+AGG - chr1.3:63298342-63298361 MS.gene21613:intron 20.0%
!! ATATTCCTAAAACATATAAG+AGG + chr1.3:63297375-63297394 None:intergenic 20.0%
!! TATAATTTCTGAACAAGAAA+AGG - chr1.3:63298593-63298612 MS.gene21613:CDS 20.0%
!! TTTATTTAGGTGATTTGAAA+TGG - chr1.3:63297472-63297491 MS.gene21613:intron 20.0%
!!! TTTTAGGAATATTAGTAAAG+AGG - chr1.3:63297383-63297402 MS.gene21613:CDS 20.0%
!!! TTTTCTTGTTCAGAAATTAT+AGG + chr1.3:63298594-63298613 None:intergenic 20.0%
! AAAAGAAACACTGTTATTGT+AGG - chr1.3:63297246-63297265 MS.gene21613:CDS 25.0%
! AAAATCATAAGCAAGAAACT+TGG - chr1.3:63298958-63298977 MS.gene21613:CDS 25.0%
! AAATTATAGGCCAATTTAGT+TGG + chr1.3:63298581-63298600 None:intergenic 25.0%
! GAGATTAAAAAATTGGTTAG+TGG - chr1.3:63297567-63297586 MS.gene21613:intron 25.0%
! TCATTGTTAACACAATCTAT+AGG + chr1.3:63297189-63297208 None:intergenic 25.0%
! TGAATCATTTCTTTATGTTG+TGG + chr1.3:63298867-63298886 None:intergenic 25.0%
! TGTAACAACTTTATGACAAT+TGG - chr1.3:63299056-63299075 MS.gene21613:CDS 25.0%
! TGTTGAGTGAATTAGTAAAA+AGG - chr1.3:63297223-63297242 MS.gene21613:CDS 25.0%
! TTTGTTGAAGAAACTTCAAT+TGG + chr1.3:63297081-63297100 None:intergenic 25.0%
!! TATAATAACTCACACTCTTT+TGG + chr1.3:63298621-63298640 None:intergenic 25.0%
!! TTATTCAATGACTTGACTTT+TGG - chr1.3:63297898-63297917 MS.gene21613:intron 25.0%
!! TTCAGTGTGAAATTTTTGTA+CGG - chr1.3:63298294-63298313 MS.gene21613:intron 25.0%
!!! GAAACTTGGATATTTTTTCT+TGG - chr1.3:63298972-63298991 MS.gene21613:CDS 25.0%
!!! GGTAATGGAGATTAAAAAAT+TGG - chr1.3:63297560-63297579 MS.gene21613:intron 25.0%
!!! TTATAGTGATTTTCAAGCTA+AGG - chr1.3:63297861-63297880 MS.gene21613:intron 25.0%
AAAAAATTGGTTAGTGGAAG+TGG - chr1.3:63297573-63297592 MS.gene21613:intron 30.0%
AACATGGCTTCAAAATTGTA+AGG - chr1.3:63298041-63298060 MS.gene21613:CDS 30.0%
AAGTAATCTAAACCTCTCTT+TGG - chr1.3:63299436-63299455 MS.gene21613:CDS 30.0%
AATAGTCTCATACACTTACT+TGG - chr1.3:63298104-63298123 MS.gene21613:CDS 30.0%
AGCATTATCATGATCTTCAA+TGG + chr1.3:63299474-63299493 None:intergenic 30.0%
AGTTGATCACTTTACTCAAA+AGG - chr1.3:63299241-63299260 MS.gene21613:CDS 30.0%
ATAGGAAAATGCAAGACTTA+AGG - chr1.3:63298407-63298426 MS.gene21613:CDS 30.0%
ATCAAGAAAGCAATTGAATG+TGG - chr1.3:63299266-63299285 MS.gene21613:CDS 30.0%
CAAGTGATGAAAAATCCAAA+AGG - chr1.3:63299117-63299136 MS.gene21613:CDS 30.0%
CAAGTTACTGTGAACAAAAA+AGG - chr1.3:63297511-63297530 MS.gene21613:intron 30.0%
GAATATTGAGGACTTAATAG+TGG + chr1.3:63296826-63296845 None:intergenic 30.0%
GGAAGTTGAAAAGAAATTTG+TGG - chr1.3:63297404-63297423 MS.gene21613:CDS 30.0%
GTTAACACAATCTATAGGTT+TGG + chr1.3:63297184-63297203 None:intergenic 30.0%
GTTGATCACTTTACTCAAAA+GGG - chr1.3:63299242-63299261 MS.gene21613:CDS 30.0%
TCATTCCTGATCTACAAAAA+AGG + chr1.3:63298908-63298927 None:intergenic 30.0%
TGTACATATCTTAACTCCAT+AGG + chr1.3:63297339-63297358 None:intergenic 30.0%
TTAGGATTTGACAAAAGATC+TGG + chr1.3:63298723-63298742 None:intergenic 30.0%
TTCACTACTGAAAATGACAA+TGG + chr1.3:63299336-63299355 None:intergenic 30.0%
! AGAGGGGTTATTCTTTATTT+AGG - chr1.3:63297459-63297478 MS.gene21613:CDS 30.0%
! GTCTTCCTCTTATATGTTTT+AGG - chr1.3:63297367-63297386 MS.gene21613:CDS 30.0%
! TTATTATACACTGAAAGTGC+TGG - chr1.3:63298633-63298652 MS.gene21613:CDS 30.0%
! TTTGGATTTTTCATCACTTG+AGG + chr1.3:63299117-63299136 None:intergenic 30.0%
!! GAACTAGCTAAAGTTGTTTT+TGG - chr1.3:63299029-63299048 MS.gene21613:CDS 30.0%
!! TGAAATGGTTGTTTGAGTTT+TGG - chr1.3:63297487-63297506 MS.gene21613:intron 30.0%
!! TTTGACAAAAGATCTGGTTT+TGG + chr1.3:63298717-63298736 None:intergenic 30.0%
!!! GTTAGACTTTTTTTCAAGTG+AGG + chr1.3:63298547-63298566 None:intergenic 30.0%
!!! TTACAATTTTGAAGCCATGT+TGG + chr1.3:63298042-63298061 None:intergenic 30.0%
AAAAGACCAAGAGATGAGTT+GGG - chr1.3:63299140-63299159 MS.gene21613:CDS 35.0%
AAGCTCCCAAATAGTTTCTA+GGG + chr1.3:63297673-63297692 None:intergenic 35.0%
ACCTGTCAAAGTTCAAACTT+AGG + chr1.3:63297728-63297747 None:intergenic 35.0%
AGATCAGGAATGAGAAAAAG+AGG - chr1.3:63298915-63298934 MS.gene21613:CDS 35.0%
AGCACTTATTTGCAAAGGTT+TGG - chr1.3:63299164-63299183 MS.gene21613:CDS 35.0%
AGTGGTAGATTATGGCTTAT+GGG - chr1.3:63297600-63297619 MS.gene21613:intron 35.0%
CTATATTCAGATCCAAAGAG+AGG + chr1.3:63299451-63299470 None:intergenic 35.0%
CTATTGTTCTGTTGAGCATA+TGG - chr1.3:63297539-63297558 MS.gene21613:intron 35.0%
CTCATAACTCTACTAACACT+TGG + chr1.3:63297000-63297019 None:intergenic 35.0%
CTTGTTTGTCAAGAATCGAA+GGG + chr1.3:63298479-63298498 None:intergenic 35.0%
GATCAGGAATGAGAAAAAGA+GGG - chr1.3:63298916-63298935 MS.gene21613:CDS 35.0%
TCAAGTGAGGAAAATGAAGT+TGG + chr1.3:63298534-63298553 None:intergenic 35.0%
TCCAACAAAGCCAACTAAAT+TGG - chr1.3:63298568-63298587 MS.gene21613:CDS 35.0%
TGAAAAGCTATATGGGAAGA+GGG - chr1.3:63297442-63297461 MS.gene21613:CDS 35.0%
TGAGATAGGTAATGTTCCTA+TGG - chr1.3:63297320-63297339 MS.gene21613:CDS 35.0%
TGAGGAATCATCATTTCCTA+GGG + chr1.3:63299099-63299118 None:intergenic 35.0%
TTAAGGATCTCTGCAAGAAA+TGG - chr1.3:63298424-63298443 MS.gene21613:CDS 35.0%
TTCTGTTGAGCATATGGTAA+TGG - chr1.3:63297545-63297564 MS.gene21613:intron 35.0%
TTGAGGAATCATCATTTCCT+AGG + chr1.3:63299100-63299119 None:intergenic 35.0%
! AAGCCTTGTGAAAAGCTATA+TGG - chr1.3:63297434-63297453 MS.gene21613:CDS 35.0%
! ACTTTGATGATCCTCTATCA+TGG + chr1.3:63299420-63299439 None:intergenic 35.0%
! AGCCTTGTGAAAAGCTATAT+GGG - chr1.3:63297435-63297454 MS.gene21613:CDS 35.0%
! CATCCTTTTACAATTCCTGT+TGG - chr1.3:63297693-63297712 MS.gene21613:intron 35.0%
! GATCATGATAATGCTGACAT+TGG - chr1.3:63299479-63299498 MS.gene21613:CDS 35.0%
! GATGATGATGATTGCTATGA+TGG - chr1.3:63298657-63298676 MS.gene21613:CDS 35.0%
! GGAAGTATAACAATTCCTGA+TGG - chr1.3:63299287-63299306 MS.gene21613:CDS 35.0%
! TCTTGTTTGTCAAGAATCGA+AGG + chr1.3:63298480-63298499 None:intergenic 35.0%
! TTCCCATATAGCTTTTCACA+AGG + chr1.3:63297440-63297459 None:intergenic 35.0%
! TTTGTGTTGATGCAGGTAAA+CGG + chr1.3:63296801-63296820 None:intergenic 35.0%
!! ATCTCTTGGTCTTTTCCTTT+TGG + chr1.3:63299135-63299154 None:intergenic 35.0%
!! GAAAATGAAGTTGGTGATGA+AGG + chr1.3:63298525-63298544 None:intergenic 35.0%
!! TTCCTTTGAGATATTCTCTC+TGG + chr1.3:63299012-63299031 None:intergenic 35.0%
!! TTGACTTTTGGAGATAAAGC+AGG - chr1.3:63297910-63297929 MS.gene21613:intron 35.0%
!!! ACTGTCCTTTTTTGTAGATC+AGG - chr1.3:63298900-63298919 MS.gene21613:CDS 35.0%
!!! GGTTTTGGAACATTTCTATG+TGG + chr1.3:63298702-63298721 None:intergenic 35.0%
AAGTTACACAGTGGAAGATC+AGG - chr1.3:63298071-63298090 MS.gene21613:CDS 40.0%
ACCCTTCCCTAGAAACTATT+TGG - chr1.3:63297664-63297683 MS.gene21613:intron 40.0%
AGCCAGAGAGAATATCTCAA+AGG - chr1.3:63299007-63299026 MS.gene21613:CDS 40.0%
AGGCTTAAGGCTAAGTTCTT+TGG + chr1.3:63297133-63297152 None:intergenic 40.0%
AGTAGAGTTATGAGAGAAGC+TGG - chr1.3:63297006-63297025 MS.gene21613:CDS 40.0%
AGTCGTAAGTTCGTAACTGT+TGG + chr1.3:63298272-63298291 None:intergenic 40.0%
CAAGAGCTTTGCATTGAAGA+GGG + chr1.3:63296753-63296772 None:intergenic 40.0%
CATCATGCGCTGAAAACAAA+GGG - chr1.3:63299387-63299406 MS.gene21613:CDS 40.0%
CCCTTCCCTAGAAACTATTT+GGG - chr1.3:63297665-63297684 MS.gene21613:intron 40.0%
CTGCCAACAGGAATTGTAAA+AGG + chr1.3:63297699-63297718 None:intergenic 40.0%
GAAAAGACCAAGAGATGAGT+TGG - chr1.3:63299139-63299158 MS.gene21613:CDS 40.0%
GAAAAGCTATATGGGAAGAG+GGG - chr1.3:63297443-63297462 MS.gene21613:CDS 40.0%
GAAGCTCCCAAATAGTTTCT+AGG + chr1.3:63297674-63297693 None:intergenic 40.0%
GAAGGAGTGGTTGAATATTG+AGG + chr1.3:63296838-63296857 None:intergenic 40.0%
GAGTGGTAGATTATGGCTTA+TGG - chr1.3:63297599-63297618 MS.gene21613:intron 40.0%
GCCTAAGTTTGAACTTTGAC+AGG - chr1.3:63297724-63297743 MS.gene21613:intron 40.0%
GGAAGAAAGAAGTTACACAG+TGG - chr1.3:63298062-63298081 MS.gene21613:CDS 40.0%
GTGAAAAGCTATATGGGAAG+AGG - chr1.3:63297441-63297460 MS.gene21613:CDS 40.0%
GTGAATCTAGCAACAAGAAG+AGG - chr1.3:63296634-63296653 MS.gene21613:CDS 40.0%
GTGGTAGATTATGGCTTATG+GGG - chr1.3:63297601-63297620 MS.gene21613:intron 40.0%
TAAGGCTAAGTTCTTTGGAC+TGG + chr1.3:63297128-63297147 None:intergenic 40.0%
TCAAGAGCTTTGCATTGAAG+AGG + chr1.3:63296754-63296773 None:intergenic 40.0%
TCAAGCTAAGGAGAGAAGTA+TGG - chr1.3:63297873-63297892 MS.gene21613:intron 40.0%
TCACTTGAAGAAGCTGAGTT+TGG + chr1.3:63298753-63298772 None:intergenic 40.0%
TCATCATGCGCTGAAAACAA+AGG - chr1.3:63299386-63299405 MS.gene21613:CDS 40.0%
TCCATGAAGAACACTCTATG+AGG + chr1.3:63299209-63299228 None:intergenic 40.0%
TCCTTCACTTTCCAATGCTT+TGG - chr1.3:63296852-63296871 MS.gene21613:CDS 40.0%
TTTGGAGATAAAGCAGGAGT+TGG - chr1.3:63297916-63297935 MS.gene21613:intron 40.0%
! CCCAAATAGTTTCTAGGGAA+GGG + chr1.3:63297668-63297687 None:intergenic 40.0%
! GTGATGGAAAGGTTTGAGAT+AGG - chr1.3:63297306-63297325 MS.gene21613:CDS 40.0%
! TCCCAAATAGTTTCTAGGGA+AGG + chr1.3:63297669-63297688 None:intergenic 40.0%
! TCCTCATAGAGTGTTCTTCA+TGG - chr1.3:63299205-63299224 MS.gene21613:CDS 40.0%
! TTGTGGAAACTTGTTCTCCA+AGG + chr1.3:63298850-63298869 None:intergenic 40.0%
! TTTTCAGCGCATGATGATTG+TGG + chr1.3:63299383-63299402 None:intergenic 40.0%
!! ACCAAAGCATTGGAAAGTGA+AGG + chr1.3:63296856-63296875 None:intergenic 40.0%
!! AGAGAGTGTTTCTAATGCTG+AGG - chr1.3:63297269-63297288 MS.gene21613:CDS 40.0%
!! GAGAGTGTTTCTAATGCTGA+GGG - chr1.3:63297270-63297289 MS.gene21613:CDS 40.0%
!! GCCAATTTAGTTGGCTTTGT+TGG + chr1.3:63298572-63298591 None:intergenic 40.0%
!! TGGGAAGCACTTATTTGCAA+AGG - chr1.3:63299159-63299178 MS.gene21613:CDS 40.0%
AAGCCTCAAGTTCTTAGCCT+TGG - chr1.3:63297147-63297166 MS.gene21613:CDS 45.0%
AATGCTGAGGGAGTAGCTAA+GGG - chr1.3:63297282-63297301 MS.gene21613:CDS 45.0%
AGCTTCTTCAAGTGAAGCAG+TGG - chr1.3:63298758-63298777 MS.gene21613:CDS 45.0%
AGGGAAAGAGACCATGATAG+AGG - chr1.3:63299406-63299425 MS.gene21613:CDS 45.0%
ATGACAATGGCATCCTTGAG+CGG + chr1.3:63299323-63299342 None:intergenic 45.0%
ATGAGCACTTTCTCTTCCCT+AGG - chr1.3:63299080-63299099 MS.gene21613:CDS 45.0%
ATGGCACTAGCAACATGAAG+AGG + chr1.3:63296676-63296695 None:intergenic 45.0%
CAAGATTCTCTGTGATGCCT+TGG - chr1.3:63298830-63298849 MS.gene21613:CDS 45.0%
GAAAGCTGCAACCAAAGCAT+TGG + chr1.3:63296866-63296885 None:intergenic 45.0%
GCTGAGTTTGGACTTGAGTT+AGG + chr1.3:63298741-63298760 None:intergenic 45.0%
GGCTAAGAACTTGAGGCTTA+AGG + chr1.3:63297146-63297165 None:intergenic 45.0%
GTGGTGAGAGTGGTAGATTA+TGG - chr1.3:63297592-63297611 MS.gene21613:intron 45.0%
TAATGCTGAGGGAGTAGCTA+AGG - chr1.3:63297281-63297300 MS.gene21613:CDS 45.0%
TCCTGTTGAAGTTGCAAGCA+TGG + chr1.3:63296695-63296714 None:intergenic 45.0%
TCTTCAAGTGAAGCAGTGGA+TGG - chr1.3:63298762-63298781 MS.gene21613:CDS 45.0%
! AGCATTGGAAAGTGAAGGAG+TGG + chr1.3:63296851-63296870 None:intergenic 45.0%
! AGTGGACTTTGTGTTGATGC+AGG + chr1.3:63296808-63296827 None:intergenic 45.0%
! GTCGACAGCGTAAAGCATTT+AGG + chr1.3:63298175-63298194 None:intergenic 45.0%
! TAGCTAAGGGAGTGATGGAA+AGG - chr1.3:63297295-63297314 MS.gene21613:CDS 45.0%
!! GTTTGGTGTATGAACCACCA+AGG + chr1.3:63297167-63297186 None:intergenic 45.0%
AGCGGAACAGATTCACCATC+AGG + chr1.3:63299305-63299324 None:intergenic 50.0%
CCACCAAGGCTAAGAACTTG+AGG + chr1.3:63297153-63297172 None:intergenic 50.0%
CTTAGGCTTAAGCTGCCAAC+AGG + chr1.3:63297711-63297730 None:intergenic 50.0%
GCAGTTCAAGCTTGCCAACA+TGG - chr1.3:63298025-63298044 MS.gene21613:CDS 50.0%
GCCATGCTTGCAACTTCAAC+AGG - chr1.3:63296691-63296710 MS.gene21613:CDS 50.0%
GTGCTTCCCAACTCATCTCT+TGG + chr1.3:63299149-63299168 None:intergenic 50.0%
GTTAGTGGAAGTGGTGAGAG+TGG - chr1.3:63297582-63297601 MS.gene21613:intron 50.0%
TGCAGCTTTCAAACGTGCTC+AGG - chr1.3:63296876-63296895 MS.gene21613:CDS 50.0%
TGGTGAATCTGTTCCGCTCA+AGG - chr1.3:63299307-63299326 MS.gene21613:CDS 50.0%
!! CCTCAAGTTCTTAGCCTTGG+TGG - chr1.3:63297150-63297169 MS.gene21613:CDS 50.0%
GGGAGTAGCTAAGGGAGTGA+TGG - chr1.3:63297290-63297309 MS.gene21613:CDS 55.0%
TCTCGATCGTTCCGCGTCTT+TGG + chr1.3:63296906-63296925 None:intergenic 55.0%
GCTCAGGCTCACCAAAGACG+CGG - chr1.3:63296892-63296911 MS.gene21613:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 63296559 63299544 63296559 ID=MS.gene21613
chr1.3 mRNA 63296559 63299544 63296559 ID=MS.gene21613.t1;Parent=MS.gene21613
chr1.3 exon 63298358 63299544 63298358 ID=MS.gene21613.t1.exon1;Parent=MS.gene21613.t1
chr1.3 CDS 63298358 63299544 63298358 ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1
chr1.3 exon 63298011 63298236 63298011 ID=MS.gene21613.t1.exon2;Parent=MS.gene21613.t1
chr1.3 CDS 63298011 63298236 63298011 ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1
chr1.3 exon 63296559 63297488 63296559 ID=MS.gene21613.t1.exon3;Parent=MS.gene21613.t1
chr1.3 CDS 63296559 63297488 63296559 ID=cds.MS.gene21613.t1;Parent=MS.gene21613.t1
Gene Sequence

>MS.gene21613

ATCATGAGAGGAGGAATTTGTAGTATACAGCTTCAAGCACTTACACAAGAAGCTGCAACTGTTGTTAAACAAGCAGTGAATCTAGCAACAAGAAGAGGTCATGCACAAGTTACACCTCTTCATGTTGCTAGTGCCATGCTTGCAACTTCAACAGGACTGTTAAGAAAAGCTTGTCTTCAATGTCACTCTCACCCTCTTCAATGCAAAGCTCTTGAGCTTTGTTTCAATGTTGCACTCAACCGTTTACCTGCATCAACACAAAGTCCACTATTAAGTCCTCAATATTCAACCACTCCTTCACTTTCCAATGCTTTGGTTGCAGCTTTCAAACGTGCTCAGGCTCACCAAAGACGCGGAACGATCGAGAATCAGCAACAGCAGCATATTCTTGCTTTGAAAATTGAAGTTGAACAGCTCATAATCTCTATACTTGATGATCCAAGTGTTAGTAGAGTTATGAGAGAAGCTGGTTTCTCTAGCACTCTTGTGAAATCAAGAGTTGAAGTTGAACAATCTCTTCCAATTGAAGTTTCTTCAACAAAAGTTTCTTCTGAATATAATAAAAACCAGTCCAAAGAACTTAGCCTTAAGCCTCAAGTTCTTAGCCTTGGTGGTTCATACACCAAACCTATAGATTGTGTTAACAATGATGATGTAACAAGTGTGTTGAGTGAATTAGTAAAAAGGAAAAGAAACACTGTTATTGTAGGAGAGAGTGTTTCTAATGCTGAGGGAGTAGCTAAGGGAGTGATGGAAAGGTTTGAGATAGGTAATGTTCCTATGGAGTTAAGATATGTACAATTTGTGAGTCTTCCTCTTATATGTTTTAGGAATATTAGTAAAGAGGAAGTTGAAAAGAAATTTGTGGAAGTTAGAAGCCTTGTGAAAAGCTATATGGGAAGAGGGGTTATTCTTTATTTAGGTGATTTGAAATGGTTGTTTGAGTTTTGGTCAAGTTACTGTGAACAAAAAAGGAACTACTATTGTTCTGTTGAGCATATGGTAATGGAGATTAAAAAATTGGTTAGTGGAAGTGGTGAGAGTGGTAGATTATGGCTTATGGGGATTGCAAATTTTAAAACATACATGAAGTGTAAAATATCTCACCCTTCCCTAGAAACTATTTGGGAGCTTCATCCTTTTACAATTCCTGTTGGCAGCTTAAGCCTAAGTTTGAACTTTGACAGGTAAATTTAAGATTTTTGTTTTCTTTTGAAACTCTTGTTCTTACTTCTATTATTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTAACACCTCTTATGTTTTACATTATTTATAGTGATTTTCAAGCTAAGGAGAGAAGTATGGTATTATTCAATGACTTGACTTTTGGAGATAAAGCAGGAGTTGGAAAGCAACTAACTTGCTGCAGAGATTGTTCAATAAAATTTGAAAATGAAGCTCTGTGTTTGAGTAACAATATAAGCAAGAAAGCATGCAGTTCAAGCTTGCCAACATGGCTTCAAAATTGTAAGGAAGAAAGAAGTTACACAGTGGAAGATCAGGTTTGTTTCATAATAGTCTCATACACTTACTTGGTAATTCAGAAAAATTCATTCGAGTTTCATTTTGATACACTGTCAGCCTAAATGCTTTACGCTGTCGACAAATAACAAAATTACTTTAATGGTGTTTATGATAAAATTTTATGATAAAAGTTAAATATCTTTTATGATATACTCCAACAGTTACGAACTTACGACTGATTCAGTGTGAAATTTTTGTACGGTGACAGTGTATATGCATTAGTCTTTAACTATATATATGCAAAAACAGGTTGTCCTTTTTCTATTTTCTTATCTTTTTCTTTTTATGTGAAATAGGAAAATGCAAGACTTAAGGATCTCTGCAAGAAATGGAACTCAATATGCAATTCAATACACAGACACCCTTCGATTCTTGACAAACAAGATTTGTTTGTTTTATCGTCATCACCTTCATCACCAACTTCATTTTCCTCACTTGAAAAAAAGTCTAACTTCCAACAAAGCCAACTAAATTGGCCTATAATTTCTGAACAAGAAAAGGTACCAAAAGAGTGTGAGTTATTATACACTGAAAGTGCTGGTGATGATGATGATTGCTATGATGGTAACTTGATCATGTTCATGCCACATAGAAATGTTCCAAAACCAGATCTTTTGTCAAATCCTAACTCAAGTCCAAACTCAGCTTCTTCAAGTGAAGCAGTGGATGGTTTAGAAAGTACTGAAATGTTCAATGAACATAATGAAGAGAATCTCAAGATTCTCTGTGATGCCTTGGAGAACAAGTTTCCACAACATAAAGAAATGATTCAAGAGATTGCAAGTACTGTCCTTTTTTGTAGATCAGGAATGAGAAAAAGAGGGAACAACTTCTTCAAAAGAGAAAATCATAAGCAAGAAACTTGGATATTTTTTCTTGGTGATGATTCTCAAGCCAGAGAGAATATCTCAAAGGAACTAGCTAAAGTTGTTTTTGGATCTTGTAACAACTTTATGACAATTGGCATGAGCACTTTCTCTTCCCTAGGAAATGATGATTCCTCAAGTGATGAAAAATCCAAAAGGAAAAGACCAAGAGATGAGTTGGGAAGCACTTATTTGCAAAGGTTTGGTGAAGCAGTGAATGAGAATCCTCATAGAGTGTTCTTCATGGAAGATTTTGAACAAGTTGATCACTTTACTCAAAAGGGTATCAAGAAAGCAATTGAATGTGGAAGTATAACAATTCCTGATGGTGAATCTGTTCCGCTCAAGGATGCCATTGTCATTTTCAGTAGTGAAAGCTTCAGTTCAGTGTCAAAGTCACCACAATCATCATGCGCTGAAAACAAAGGGAAAGAGACCATGATAGAGGATCATCAAAGTAATCTAAACCTCTCTTTGGATCTGAATATAGCCATTGAAGATCATGATAATGCTGACATTGGTATTCTTGAGTTAGTTGACAAGAAAATTAGTTTTAATTTGTAA

Protein sequence

>MS.gene21613.t1

IMRGGICSIQLQALTQEAATVVKQAVNLATRRGHAQVTPLHVASAMLATSTGLLRKACLQCHSHPLQCKALELCFNVALNRLPASTQSPLLSPQYSTTPSLSNALVAAFKRAQAHQRRGTIENQQQQHILALKIEVEQLIISILDDPSVSRVMREAGFSSTLVKSRVEVEQSLPIEVSSTKVSSEYNKNQSKELSLKPQVLSLGGSYTKPIDCVNNDDVTSVLSELVKRKRNTVIVGESVSNAEGVAKGVMERFEIGNVPMELRYVQFVSLPLICFRNISKEEVEKKFVEVRSLVKSYMGRGVILYLGDLKWLFEFWSSYCEQKRNYYCSVEHMVMEIKKLVSGSGESGRLWLMGIANFKTYMKCKISHPSLETIWELHPFTIPVGSLSLSLNFDSDFQAKERSMVLFNDLTFGDKAGVGKQLTCCRDCSIKFENEALCLSNNISKKACSSSLPTWLQNCKEERSYTVEDQVPKECELLYTESAGDDDDCYDGNLIMFMPHRNVPKPDLLSNPNSSPNSASSSEAVDGLESTEMFNEHNEENLKILCDALENKFPQHKEMIQEIASTVLFCRSGMRKRGNNFFKRENHKQETWIFFLGDDSQARENISKELAKVVFGSCNNFMTIGMSTFSSLGNDDSSSDEKSKRKRPRDELGSTYLQRFGEAVNENPHRVFFMEDFEQVDHFTQKGIKKAIECGSITIPDGESVPLKDAIVIFSSESFSSVSKSPQSSCAENKGKETMIEDHQSNLNLSLDLNIAIEDHDNADIGILELVDKKISFNL