Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055260.t1 | RHN46137.1 | 79.6 | 269 | 55 | 0 | 3 | 271 | 487 | 755 | 2.10E-110 | 408.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055260.t1 | A0A396H5C4 | 79.6 | 269 | 55 | 0 | 3 | 271 | 487 | 755 | 1.5e-110 | 408.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055260 | MS.gene21613 | 0.808648 | 2.79E-50 | -1.69E-46 |
MS.gene055260 | MS.gene25435 | 0.801362 | 9.33E-49 | -1.69E-46 |
MS.gene055260 | MS.gene62491 | 0.811732 | 6.04E-51 | -1.69E-46 |
MS.gene055260 | MS.gene74119 | 0.818279 | 2.13E-52 | -1.69E-46 |
MS.gene055260 | MS.gene74364 | 0.801467 | 8.88E-49 | -1.69E-46 |
MS.gene055260 | MS.gene81900 | 0.807057 | 6.09E-50 | -1.69E-46 |
MS.gene055260 | MS.gene84454 | 0.811265 | 7.63E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055260.t1 | MTR_7g062280 | 78.889 | 270 | 57 | 0 | 2 | 271 | 223 | 492 | 8.76e-147 | 420 |
MS.gene055260.t1 | MTR_7g062280 | 27.234 | 235 | 146 | 8 | 45 | 258 | 10 | 240 | 3.59e-12 | 66.2 |
MS.gene055260.t1 | MTR_7g062300 | 74.621 | 264 | 61 | 3 | 2 | 263 | 213 | 472 | 1.09e-128 | 374 |
MS.gene055260.t1 | MTR_7g062300 | 27.679 | 224 | 147 | 7 | 45 | 258 | 12 | 230 | 1.49e-12 | 67.4 |
MS.gene055260.t1 | MTR_7g063920 | 67.037 | 270 | 83 | 2 | 2 | 271 | 174 | 437 | 1.91e-115 | 338 |
MS.gene055260.t1 | MTR_7g063840 | 55.185 | 270 | 119 | 2 | 2 | 271 | 207 | 474 | 1.38e-86 | 266 |
MS.gene055260.t1 | MTR_7g063840 | 28.761 | 226 | 132 | 9 | 48 | 258 | 13 | 224 | 1.59e-11 | 64.3 |
MS.gene055260.t1 | MTR_7g063720 | 53.306 | 242 | 97 | 3 | 30 | 271 | 8 | 233 | 2.85e-80 | 242 |
MS.gene055260.t1 | MTR_7g063900 | 53.169 | 284 | 116 | 8 | 2 | 271 | 209 | 489 | 9.43e-77 | 241 |
MS.gene055260.t1 | MTR_7g063900 | 29.148 | 223 | 143 | 7 | 45 | 258 | 10 | 226 | 2.05e-15 | 75.9 |
MS.gene055260.t1 | MTR_7g063670 | 50.360 | 278 | 104 | 6 | 2 | 271 | 207 | 458 | 1.69e-75 | 237 |
MS.gene055260.t1 | MTR_7g063660 | 50.916 | 273 | 131 | 2 | 2 | 271 | 206 | 478 | 2.49e-75 | 237 |
MS.gene055260.t1 | MTR_7g063660 | 29.730 | 222 | 141 | 8 | 45 | 258 | 9 | 223 | 3.01e-13 | 69.7 |
MS.gene055260.t1 | MTR_7g063820 | 50.725 | 276 | 129 | 3 | 2 | 271 | 211 | 485 | 2.40e-74 | 235 |
MS.gene055260.t1 | MTR_7g063820 | 28.125 | 224 | 152 | 4 | 42 | 258 | 7 | 228 | 4.07e-15 | 75.1 |
MS.gene055260.t1 | MTR_7g063880 | 51.825 | 274 | 113 | 6 | 2 | 270 | 209 | 468 | 2.56e-73 | 232 |
MS.gene055260.t1 | MTR_7g063880 | 30.357 | 224 | 138 | 7 | 45 | 258 | 11 | 226 | 8.53e-13 | 68.2 |
MS.gene055260.t1 | MTR_3g007740 | 50.185 | 271 | 106 | 6 | 2 | 265 | 195 | 443 | 3.49e-71 | 225 |
MS.gene055260.t1 | MTR_3g007740 | 29.956 | 227 | 123 | 8 | 45 | 258 | 9 | 212 | 1.09e-11 | 64.7 |
MS.gene055260.t1 | MTR_7g063890 | 55.516 | 281 | 112 | 7 | 2 | 270 | 225 | 504 | 2.77e-68 | 219 |
MS.gene055260.t1 | MTR_7g063890 | 30.769 | 221 | 141 | 6 | 45 | 258 | 27 | 242 | 1.87e-17 | 82.0 |
MS.gene055260.t1 | MTR_7g063830 | 48.339 | 271 | 103 | 6 | 2 | 270 | 209 | 444 | 7.89e-68 | 217 |
MS.gene055260.t1 | MTR_7g063830 | 27.434 | 226 | 141 | 6 | 46 | 258 | 11 | 226 | 3.07e-12 | 66.6 |
MS.gene055260.t1 | MTR_7g063850 | 44.318 | 264 | 117 | 8 | 27 | 270 | 35 | 288 | 4.38e-56 | 182 |
MS.gene055260.t1 | MTR_7g066430 | 40.404 | 297 | 143 | 5 | 2 | 270 | 208 | 498 | 1.08e-54 | 184 |
MS.gene055260.t1 | MTR_7g066410 | 39.649 | 285 | 148 | 5 | 3 | 266 | 233 | 514 | 1.53e-51 | 176 |
MS.gene055260.t1 | MTR_7g066570 | 40.636 | 283 | 144 | 5 | 3 | 268 | 209 | 484 | 2.84e-51 | 176 |
MS.gene055260.t1 | MTR_7g100420 | 40.152 | 264 | 151 | 3 | 1 | 260 | 133 | 393 | 1.85e-49 | 168 |
MS.gene055260.t1 | MTR_7g066400 | 38.462 | 273 | 136 | 6 | 3 | 266 | 190 | 439 | 2.20e-47 | 164 |
MS.gene055260.t1 | MTR_7g066260 | 40.959 | 271 | 126 | 7 | 2 | 264 | 218 | 462 | 4.43e-47 | 164 |
MS.gene055260.t1 | MTR_7g066260 | 30.531 | 226 | 140 | 8 | 45 | 258 | 15 | 235 | 1.07e-14 | 73.9 |
MS.gene055260.t1 | MTR_7g058710 | 35.986 | 289 | 157 | 6 | 2 | 271 | 205 | 484 | 3.94e-44 | 155 |
MS.gene055260.t1 | MTR_7g058710 | 32.444 | 225 | 127 | 8 | 45 | 258 | 12 | 222 | 4.60e-18 | 84.0 |
MS.gene055260.t1 | MTR_7g012680 | 38.246 | 285 | 135 | 6 | 2 | 271 | 194 | 452 | 2.21e-43 | 153 |
MS.gene055260.t1 | MTR_7g012680 | 28.571 | 224 | 124 | 5 | 45 | 258 | 14 | 211 | 6.64e-13 | 68.6 |
MS.gene055260.t1 | MTR_7g066580 | 35.294 | 289 | 150 | 7 | 1 | 264 | 165 | 441 | 4.02e-43 | 152 |
MS.gene055260.t1 | MTR_7g066680 | 35.294 | 306 | 145 | 7 | 1 | 260 | 36 | 334 | 1.83e-40 | 143 |
MS.gene055260.t1 | MTR_7g066480 | 35.294 | 272 | 106 | 6 | 2 | 265 | 213 | 422 | 6.39e-40 | 144 |
MS.gene055260.t1 | MTR_3g065200 | 38.496 | 226 | 111 | 5 | 33 | 251 | 204 | 408 | 1.03e-38 | 141 |
MS.gene055260.t1 | MTR_7g066350 | 35.401 | 274 | 136 | 4 | 2 | 266 | 210 | 451 | 4.04e-38 | 139 |
MS.gene055260.t1 | MTR_7g066350 | 31.696 | 224 | 138 | 6 | 45 | 258 | 9 | 227 | 9.77e-16 | 77.0 |
MS.gene055260.t1 | MTR_7g066490 | 33.579 | 271 | 112 | 5 | 2 | 265 | 199 | 408 | 5.34e-37 | 135 |
MS.gene055260.t1 | MTR_7g058700 | 34.944 | 269 | 110 | 5 | 3 | 271 | 725 | 928 | 6.08e-37 | 139 |
MS.gene055260.t1 | MTR_1g041315 | 35.686 | 255 | 125 | 5 | 3 | 248 | 227 | 451 | 6.27e-37 | 136 |
MS.gene055260.t1 | MTR_4g019310 | 34.035 | 285 | 164 | 7 | 2 | 271 | 222 | 497 | 8.72e-36 | 134 |
MS.gene055260.t1 | MTR_7g066340 | 34.701 | 268 | 141 | 4 | 2 | 264 | 215 | 453 | 1.09e-35 | 133 |
MS.gene055260.t1 | MTR_7g066310 | 35.909 | 220 | 112 | 3 | 45 | 264 | 193 | 383 | 3.24e-35 | 130 |
MS.gene055260.t1 | MTR_7g066360 | 39.640 | 222 | 95 | 6 | 39 | 260 | 263 | 445 | 3.71e-35 | 131 |
MS.gene055260.t1 | MTR_7g066360 | 28.708 | 209 | 131 | 6 | 44 | 241 | 13 | 214 | 4.23e-12 | 66.2 |
MS.gene055260.t1 | MTR_7g066280 | 36.100 | 241 | 133 | 3 | 45 | 264 | 150 | 390 | 5.70e-35 | 130 |
MS.gene055260.t1 | MTR_7g066290 | 37.963 | 216 | 81 | 3 | 45 | 260 | 267 | 429 | 9.19e-35 | 130 |
MS.gene055260.t1 | MTR_1g014060 | 39.086 | 197 | 105 | 3 | 75 | 271 | 210 | 391 | 8.93e-34 | 126 |
MS.gene055260.t1 | MTR_1g014060 | 27.111 | 225 | 133 | 6 | 57 | 264 | 12 | 222 | 3.02e-14 | 72.4 |
MS.gene055260.t1 | MTR_4g017830 | 30.822 | 292 | 176 | 7 | 2 | 270 | 219 | 507 | 2.87e-27 | 110 |
MS.gene055260.t1 | MTR_7g063760 | 59.459 | 74 | 29 | 1 | 199 | 271 | 1 | 74 | 2.38e-23 | 90.9 |
MS.gene055260.t1 | MTR_4g019340 | 30.116 | 259 | 161 | 6 | 2 | 252 | 255 | 501 | 7.59e-22 | 94.7 |
MS.gene055260.t1 | MTR_4g017440 | 29.617 | 287 | 169 | 7 | 2 | 264 | 225 | 502 | 8.37e-21 | 92.0 |
MS.gene055260.t1 | MTR_2g029400 | 29.368 | 269 | 145 | 6 | 2 | 254 | 166 | 405 | 9.99e-21 | 91.3 |
MS.gene055260.t1 | MTR_4g017410 | 30.612 | 294 | 152 | 8 | 2 | 270 | 224 | 490 | 1.84e-20 | 90.9 |
MS.gene055260.t1 | MTR_4g017410 | 28.455 | 246 | 151 | 5 | 48 | 271 | 12 | 254 | 3.39e-13 | 69.3 |
MS.gene055260.t1 | MTR_4g017550 | 30.450 | 289 | 156 | 8 | 2 | 260 | 196 | 469 | 2.37e-20 | 90.5 |
MS.gene055260.t1 | MTR_4g017470 | 28.618 | 304 | 170 | 8 | 2 | 270 | 185 | 476 | 3.24e-20 | 90.1 |
MS.gene055260.t1 | MTR_1g115440 | 28.870 | 239 | 127 | 8 | 45 | 257 | 11 | 232 | 6.32e-19 | 83.6 |
MS.gene055260.t1 | MTR_7g066390 | 54.795 | 73 | 33 | 0 | 192 | 264 | 50 | 122 | 2.93e-18 | 79.7 |
MS.gene055260.t1 | MTR_4g017610 | 30.337 | 267 | 165 | 6 | 2 | 260 | 222 | 475 | 3.66e-17 | 81.3 |
MS.gene055260.t1 | MTR_4g017610 | 27.801 | 241 | 151 | 5 | 48 | 270 | 16 | 251 | 3.15e-13 | 69.7 |
MS.gene055260.t1 | MTR_8g023240 | 25.188 | 266 | 182 | 7 | 2 | 256 | 222 | 481 | 1.03e-15 | 77.0 |
MS.gene055260.t1 | MTR_8g445860 | 27.391 | 230 | 139 | 7 | 45 | 257 | 13 | 231 | 5.18e-15 | 72.8 |
MS.gene055260.t1 | MTR_7g063690 | 47.222 | 72 | 36 | 1 | 2 | 71 | 150 | 221 | 3.24e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055260.t1 | AT3G09140 | 31.469 | 286 | 158 | 9 | 2 | 266 | 255 | 523 | 5.18e-24 | 101 |
MS.gene055260.t1 | AT5G01140 | 26.449 | 276 | 188 | 6 | 2 | 271 | 192 | 458 | 1.82e-23 | 99.4 |
MS.gene055260.t1 | AT3G09140 | 31.119 | 286 | 159 | 9 | 2 | 266 | 227 | 495 | 1.84e-23 | 99.8 |
MS.gene055260.t1 | AT5G01130 | 27.431 | 288 | 151 | 8 | 2 | 271 | 204 | 451 | 1.16e-21 | 94.0 |
MS.gene055260.t1 | AT5G01130 | 26.522 | 230 | 150 | 6 | 38 | 258 | 2 | 221 | 7.43e-11 | 62.4 |
MS.gene055260.t1 | AT5G01120 | 28.364 | 275 | 176 | 5 | 2 | 260 | 216 | 485 | 4.29e-20 | 89.7 |
MS.gene055260.t1 | AT5G01150 | 24.739 | 287 | 186 | 7 | 2 | 270 | 212 | 486 | 4.99e-18 | 84.0 |
MS.gene055260.t1 | AT5G01150 | 27.556 | 225 | 142 | 8 | 48 | 258 | 12 | 229 | 5.65e-11 | 62.8 |
MS.gene055260.t1 | AT5G43240 | 28.014 | 282 | 169 | 6 | 2 | 260 | 75 | 345 | 8.02e-14 | 70.9 |
MS.gene055260.t1 | AT5G43240 | 28.014 | 282 | 169 | 6 | 2 | 260 | 219 | 489 | 1.02e-13 | 71.2 |
MS.gene055260.t1 | AT5G43240 | 28.014 | 282 | 169 | 6 | 2 | 260 | 219 | 489 | 1.02e-13 | 71.2 |
MS.gene055260.t1 | AT5G43240 | 28.014 | 282 | 169 | 6 | 2 | 260 | 219 | 489 | 1.02e-13 | 71.2 |
MS.gene055260.t1 | AT3G09120 | 28.571 | 238 | 142 | 8 | 40 | 258 | 1 | 229 | 2.10e-12 | 66.6 |
Find 47 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGGAATTGTTCGAATATT+TGG | 0.132360 | 7.4:-41446015 | MS.gene055260:CDS |
CATCCGATGATGTCAAATAT+TGG | 0.288315 | 7.4:+41445929 | None:intergenic |
GTACAAGAGTATAGTTGATT+TGG | 0.317989 | 7.4:-41445959 | MS.gene055260:CDS |
AGTAAACCCAAAGCTGAAAT+TGG | 0.334732 | 7.4:+41445619 | None:intergenic |
AGTGAGCCAGACCATTTGTT+AGG | 0.352521 | 7.4:+41445405 | None:intergenic |
ATTGACTCCAATTTCAGCTT+TGG | 0.362521 | 7.4:-41445626 | MS.gene055260:CDS |
TTGACTCCAATTTCAGCTTT+GGG | 0.364093 | 7.4:-41445625 | MS.gene055260:CDS |
AACTCCTCTTAATGATTTGA+AGG | 0.368693 | 7.4:-41445584 | MS.gene055260:CDS |
CCTGGTGTTCATGAATATTA+TGG | 0.375168 | 7.4:-41445832 | MS.gene055260:CDS |
TTATCTAATGTGATGATTCC+TGG | 0.396168 | 7.4:-41445709 | MS.gene055260:CDS |
TGTTCCTTGGGAAGCATCAA+TGG | 0.408006 | 7.4:-41445985 | MS.gene055260:CDS |
CGAGATATGTAACTAATTTG+AGG | 0.410701 | 7.4:-41445741 | MS.gene055260:CDS |
AACCATCCCTTGAGAGTTCA+AGG | 0.410941 | 7.4:-41446182 | MS.gene055260:CDS |
GTAGTGTCTTAGCATATTGA+AGG | 0.414424 | 7.4:-41445450 | MS.gene055260:intron |
ATTTGGAGGGACTTGTTCCT+TGG | 0.422042 | 7.4:-41445998 | MS.gene055260:CDS |
TCTGTAGCAAAATACATATC+TGG | 0.428362 | 7.4:+41445667 | None:intergenic |
CAAATCTGTCAAGGTTGACT+TGG | 0.429040 | 7.4:+41446218 | None:intergenic |
CCTGGTGATGGTTATGTAAA+GGG | 0.442731 | 7.4:-41445691 | MS.gene055260:CDS |
TGAACACCAGGATCAAGAAT+TGG | 0.448075 | 7.4:+41445844 | None:intergenic |
TCACTTGTTAACTGAAGTTA+AGG | 0.452758 | 7.4:-41445387 | MS.gene055260:CDS |
ATCTGCCCTAACAAATGGTC+TGG | 0.455703 | 7.4:-41445411 | MS.gene055260:CDS |
ATATTACCAATTCTTGATCC+TGG | 0.456535 | 7.4:-41445850 | MS.gene055260:CDS |
GTATGATGGTGAAATTGTTA+AGG | 0.481094 | 7.4:-41446151 | MS.gene055260:CDS |
AAAGCTGAAATTGGAGTCAA+TGG | 0.488614 | 7.4:+41445628 | None:intergenic |
TTTAACTGTGAGGCAATGTA+AGG | 0.492529 | 7.4:+41445886 | None:intergenic |
TTTGGAGGGACTTGTTCCTT+GGG | 0.497730 | 7.4:-41445997 | MS.gene055260:CDS |
TCAACATCTGCCCTAACAAA+TGG | 0.506656 | 7.4:-41445416 | MS.gene055260:CDS |
CATCATCGGATGCTAAGAAC+AGG | 0.519251 | 7.4:-41445918 | MS.gene055260:CDS |
AGTTGTCACTATTGGCATCA+AGG | 0.520473 | 7.4:-41445557 | MS.gene055260:CDS |
AACAAGGTATTGCATGCTCA+AGG | 0.520968 | 7.4:-41446087 | MS.gene055260:CDS |
GTGAGCCAGACCATTTGTTA+GGG | 0.527379 | 7.4:+41445406 | None:intergenic |
GGAATTGTTCGAATATTTGG+AGG | 0.527551 | 7.4:-41446012 | MS.gene055260:CDS |
TTTCTTACATATCCTTTGGG+TGG | 0.551503 | 7.4:-41446033 | MS.gene055260:CDS |
CCATAATATTCATGAACACC+AGG | 0.552460 | 7.4:+41445832 | None:intergenic |
TCCTGGTGATGGTTATGTAA+AGG | 0.556342 | 7.4:-41445692 | MS.gene055260:CDS |
AACCTTGAACTCTCAAGGGA+TGG | 0.557763 | 7.4:+41446180 | None:intergenic |
AAACCAATATTTGACATCAT+CGG | 0.567419 | 7.4:-41445932 | MS.gene055260:CDS |
CCCTTTACATAACCATCACC+AGG | 0.576971 | 7.4:+41445691 | None:intergenic |
GAATTGTTCGAATATTTGGA+GGG | 0.598800 | 7.4:-41446011 | MS.gene055260:CDS |
TAACTGGCTTCAGAATGACT+TGG | 0.602428 | 7.4:+41446124 | None:intergenic |
CTTGCTTAACTTTAACTGTG+AGG | 0.620501 | 7.4:+41445876 | None:intergenic |
TATAAGAAAATCTGATAACA+AGG | 0.628383 | 7.4:-41446103 | MS.gene055260:CDS |
CAATCCATTGATGCTTCCCA+AGG | 0.636233 | 7.4:+41445981 | None:intergenic |
ACAAGGTATTGCATGCTCAA+GGG | 0.636866 | 7.4:-41446086 | MS.gene055260:CDS |
ATTCGAACAATTCCACCCAA+AGG | 0.640069 | 7.4:+41446021 | None:intergenic |
AATGTGATGATTCCTGGTGA+TGG | 0.650008 | 7.4:-41445703 | MS.gene055260:CDS |
TGTCACTATTGGCATCAAGG+AGG | 0.742676 | 7.4:-41445554 | MS.gene055260:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAGAAAATCTGATAACA+AGG | - | chr7.4:41445528-41445547 | MS.gene055260:intron | 20.0% |
!!! | TTATCAGATTTTCTTATAAC+TGG | + | chr7.4:41445526-41445545 | None:intergenic | 20.0% |
! | AAACCAATATTTGACATCAT+CGG | - | chr7.4:41445699-41445718 | MS.gene055260:CDS | 25.0% |
!! | AAGTTTTCTTACATATCCTT+TGG | - | chr7.4:41445594-41445613 | MS.gene055260:CDS | 25.0% |
!! | AGTTTTCTTACATATCCTTT+GGG | - | chr7.4:41445595-41445614 | MS.gene055260:CDS | 25.0% |
!! | CATTTTCAAATTCTCAAATC+TGG | - | chr7.4:41445859-41445878 | MS.gene055260:CDS | 25.0% |
!! | TTTTCCTTCAAATCATTAAG+AGG | + | chr7.4:41446054-41446073 | None:intergenic | 25.0% |
AACTCCTCTTAATGATTTGA+AGG | - | chr7.4:41446047-41446066 | MS.gene055260:CDS | 30.0% | |
AAGGAAAAAGTTGTCACTAT+TGG | - | chr7.4:41446066-41446085 | MS.gene055260:CDS | 30.0% | |
ATATTACCAATTCTTGATCC+TGG | - | chr7.4:41445781-41445800 | MS.gene055260:CDS | 30.0% | |
CGAGATATGTAACTAATTTG+AGG | - | chr7.4:41445890-41445909 | MS.gene055260:CDS | 30.0% | |
GAATTGTTCGAATATTTGGA+GGG | - | chr7.4:41445620-41445639 | MS.gene055260:CDS | 30.0% | |
TCTGTAGCAAAATACATATC+TGG | + | chr7.4:41445967-41445986 | None:intergenic | 30.0% | |
TTATCTAATGTGATGATTCC+TGG | - | chr7.4:41445922-41445941 | MS.gene055260:CDS | 30.0% | |
! | CATTAAGAGGAGTTTTCAAT+CGG | + | chr7.4:41446041-41446060 | None:intergenic | 30.0% |
! | GTACAAGAGTATAGTTGATT+TGG | - | chr7.4:41445672-41445691 | MS.gene055260:CDS | 30.0% |
! | GTATGATGGTGAAATTGTTA+AGG | - | chr7.4:41445480-41445499 | MS.gene055260:intron | 30.0% |
! | GTATTTTGCTACAGATGATT+TGG | - | chr7.4:41445972-41445991 | MS.gene055260:CDS | 30.0% |
! | TCACTTGTTAACTGAAGTTA+AGG | - | chr7.4:41446244-41446263 | MS.gene055260:CDS | 30.0% |
!! | ACCTTGACAGATTTGTTTTT+AGG | - | chr7.4:41445421-41445440 | MS.gene055260:CDS | 30.0% |
!!! | CCTTGACAGATTTGTTTTTA+GGG | - | chr7.4:41445422-41445441 | MS.gene055260:CDS | 30.0% |
AAAGCTGAAATTGGAGTCAA+TGG | + | chr7.4:41446006-41446025 | None:intergenic | 35.0% | |
AGAAAAACCTTGAACTCTCA+AGG | + | chr7.4:41445459-41445478 | None:intergenic | 35.0% | |
AGTAAACCCAAAGCTGAAAT+TGG | + | chr7.4:41446015-41446034 | None:intergenic | 35.0% | |
CATCCGATGATGTCAAATAT+TGG | + | chr7.4:41445705-41445724 | None:intergenic | 35.0% | |
CCATAATATTCATGAACACC+AGG | + | chr7.4:41445802-41445821 | None:intergenic | 35.0% | |
CCCTAAAAACAAATCTGTCA+AGG | + | chr7.4:41445425-41445444 | None:intergenic | 35.0% | |
CCTGGTGTTCATGAATATTA+TGG | - | chr7.4:41445799-41445818 | MS.gene055260:CDS | 35.0% | |
CTTGCTTAACTTTAACTGTG+AGG | + | chr7.4:41445758-41445777 | None:intergenic | 35.0% | |
GAAAAACCTTGAACTCTCAA+GGG | + | chr7.4:41445458-41445477 | None:intergenic | 35.0% | |
GGAATTGTTCGAATATTTGG+AGG | - | chr7.4:41445619-41445638 | MS.gene055260:CDS | 35.0% | |
GGTGGAATTGTTCGAATATT+TGG | - | chr7.4:41445616-41445635 | MS.gene055260:CDS | 35.0% | |
GTAGTGTCTTAGCATATTGA+AGG | - | chr7.4:41446181-41446200 | MS.gene055260:CDS | 35.0% | |
TTGACTCCAATTTCAGCTTT+GGG | - | chr7.4:41446006-41446025 | MS.gene055260:CDS | 35.0% | |
TTTAACTGTGAGGCAATGTA+AGG | + | chr7.4:41445748-41445767 | None:intergenic | 35.0% | |
TTTCTTACATATCCTTTGGG+TGG | - | chr7.4:41445598-41445617 | MS.gene055260:CDS | 35.0% | |
! | ATTGACTCCAATTTCAGCTT+TGG | - | chr7.4:41446005-41446024 | MS.gene055260:CDS | 35.0% |
! | TCAAGGTTTTTCTCGTATGA+TGG | - | chr7.4:41445466-41445485 | MS.gene055260:intron | 35.0% |
!!! | GACAGATTTGTTTTTAGGGA+AGG | - | chr7.4:41445426-41445445 | MS.gene055260:CDS | 35.0% |
AATGTGATGATTCCTGGTGA+TGG | - | chr7.4:41445928-41445947 | MS.gene055260:CDS | 40.0% | |
AGTTGTCACTATTGGCATCA+AGG | - | chr7.4:41446074-41446093 | MS.gene055260:CDS | 40.0% | |
ATTCGAACAATTCCACCCAA+AGG | + | chr7.4:41445613-41445632 | None:intergenic | 40.0% | |
CAAATCTGTCAAGGTTGACT+TGG | + | chr7.4:41445416-41445435 | None:intergenic | 40.0% | |
TCAACATCTGCCCTAACAAA+TGG | - | chr7.4:41446215-41446234 | MS.gene055260:CDS | 40.0% | |
TGAACACCAGGATCAAGAAT+TGG | + | chr7.4:41445790-41445809 | None:intergenic | 40.0% | |
! | TAACTGGCTTCAGAATGACT+TGG | + | chr7.4:41445510-41445529 | None:intergenic | 40.0% |
!! | AACAAGGTATTGCATGCTCA+AGG | - | chr7.4:41445544-41445563 | MS.gene055260:intron | 40.0% |
!! | ACAAGGTATTGCATGCTCAA+GGG | - | chr7.4:41445545-41445564 | MS.gene055260:intron | 40.0% |
!! | CCTGGTGATGGTTATGTAAA+GGG | - | chr7.4:41445940-41445959 | MS.gene055260:CDS | 40.0% |
!! | TCCTGGTGATGGTTATGTAA+AGG | - | chr7.4:41445939-41445958 | MS.gene055260:CDS | 40.0% |
AACCATCCCTTGAGAGTTCA+AGG | - | chr7.4:41445449-41445468 | MS.gene055260:CDS | 45.0% | |
AACCTTGAACTCTCAAGGGA+TGG | + | chr7.4:41445454-41445473 | None:intergenic | 45.0% | |
AGTGAGCCAGACCATTTGTT+AGG | + | chr7.4:41446229-41446248 | None:intergenic | 45.0% | |
ATCTGCCCTAACAAATGGTC+TGG | - | chr7.4:41446220-41446239 | MS.gene055260:CDS | 45.0% | |
CAATCCATTGATGCTTCCCA+AGG | + | chr7.4:41445653-41445672 | None:intergenic | 45.0% | |
CATCATCGGATGCTAAGAAC+AGG | - | chr7.4:41445713-41445732 | MS.gene055260:CDS | 45.0% | |
CCCTTTACATAACCATCACC+AGG | + | chr7.4:41445943-41445962 | None:intergenic | 45.0% | |
TGTCACTATTGGCATCAAGG+AGG | - | chr7.4:41446077-41446096 | MS.gene055260:CDS | 45.0% | |
! | ATTTGGAGGGACTTGTTCCT+TGG | - | chr7.4:41445633-41445652 | MS.gene055260:CDS | 45.0% |
! | GTGAGCCAGACCATTTGTTA+GGG | + | chr7.4:41446228-41446247 | None:intergenic | 45.0% |
! | TTTGGAGGGACTTGTTCCTT+GGG | - | chr7.4:41445634-41445653 | MS.gene055260:CDS | 45.0% |
!! | TGTTCCTTGGGAAGCATCAA+TGG | - | chr7.4:41445646-41445665 | MS.gene055260:CDS | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 41445376 | 41446277 | 41445376 | ID=MS.gene055260 |
chr7.4 | mRNA | 41445376 | 41446277 | 41445376 | ID=MS.gene055260.t1;Parent=MS.gene055260 |
chr7.4 | exon | 41445555 | 41446277 | 41445555 | ID=MS.gene055260.t1.exon1;Parent=MS.gene055260.t1 |
chr7.4 | CDS | 41445555 | 41446277 | 41445555 | ID=cds.MS.gene055260.t1;Parent=MS.gene055260.t1 |
chr7.4 | exon | 41445376 | 41445468 | 41445376 | ID=MS.gene055260.t1.exon2;Parent=MS.gene055260.t1 |
chr7.4 | CDS | 41445376 | 41445468 | 41445376 | ID=cds.MS.gene055260.t1;Parent=MS.gene055260.t1 |
Gene Sequence |
Protein sequence |