Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22833.t1 | XP_024625734.1 | 89.9 | 554 | 51 | 1 | 2 | 555 | 9 | 557 | 2.10E-269 | 937.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22833.t1 | Q66GQ2 | 35.1 | 487 | 200 | 12 | 2 | 409 | 10 | 459 | 1.6e-52 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22833.t1 | A0A396H8E0 | 89.9 | 554 | 51 | 1 | 2 | 555 | 9 | 557 | 1.5e-269 | 937.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene22833 | 0.814152 | 1.78E-51 | -1.69E-46 |
| MS.gene050605 | MS.gene22833 | 0.938906 | 3.10E-99 | -1.69E-46 |
| MS.gene050680 | MS.gene22833 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene22833 | 0.813503 | 2.48E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene22833 | 0.819323 | 1.23E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene22833 | 0.82894 | 6.80E-55 | -1.69E-46 |
| MS.gene051370 | MS.gene22833 | 0.815929 | 7.19E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene22833 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene22833 | 0.808438 | 3.10E-50 | -1.69E-46 |
| MS.gene05288 | MS.gene22833 | 0.819629 | 1.05E-52 | -1.69E-46 |
| MS.gene05289 | MS.gene22833 | 0.817694 | 2.89E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene22833 | 0.804154 | 2.48E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene22833 | 0.81563 | 8.38E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene22833 | 0.815897 | 7.30E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene22833 | 0.851674 | 7.61E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene22833 | 0.835511 | 1.61E-56 | -1.69E-46 |
| MS.gene058548 | MS.gene22833 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene058549 | MS.gene22833 | 0.805072 | 1.59E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene22833 | 0.822546 | 2.24E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene22833 | 0.821968 | 3.05E-53 | -1.69E-46 |
| MS.gene059609 | MS.gene22833 | 0.819699 | 1.01E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene22833 | 0.814032 | 1.89E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene22833 | 0.82248 | 2.32E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene22833 | 0.804476 | 2.12E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene22833 | 0.812076 | 5.09E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene22833 | 0.813868 | 2.06E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene22833 | 0.8131 | 3.04E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene22833 | 0.806612 | 7.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22833.t1 | MTR_8g028230 | 42.061 | 592 | 251 | 16 | 8 | 554 | 14 | 558 | 3.44e-119 | 363 |
| MS.gene22833.t1 | MTR_8g028230 | 41.217 | 575 | 239 | 17 | 8 | 554 | 14 | 517 | 3.10e-112 | 344 |
| MS.gene22833.t1 | MTR_8g028230 | 43.976 | 498 | 216 | 11 | 85 | 554 | 9 | 471 | 7.11e-109 | 334 |
| MS.gene22833.t1 | MTR_8g028230 | 44.348 | 460 | 203 | 10 | 113 | 554 | 20 | 444 | 6.45e-104 | 320 |
| MS.gene22833.t1 | MTR_5g009750 | 41.873 | 363 | 145 | 8 | 47 | 351 | 60 | 414 | 6.83e-74 | 248 |
| MS.gene22833.t1 | MTR_7g105430 | 27.962 | 422 | 199 | 15 | 15 | 350 | 36 | 438 | 3.54e-25 | 110 |
| MS.gene22833.t1 | MTR_3g051430 | 26.996 | 263 | 178 | 6 | 128 | 389 | 198 | 447 | 4.56e-22 | 100 |
| MS.gene22833.t1 | MTR_5g092610 | 29.130 | 230 | 149 | 3 | 122 | 351 | 188 | 403 | 5.80e-22 | 100 |
| MS.gene22833.t1 | MTR_4g052400 | 25.879 | 398 | 222 | 12 | 15 | 349 | 48 | 435 | 9.73e-19 | 90.1 |
| MS.gene22833.t1 | MTR_4g052400 | 30.000 | 220 | 147 | 4 | 132 | 349 | 59 | 273 | 1.14e-17 | 86.3 |
| MS.gene22833.t1 | MTR_2g086890 | 26.792 | 265 | 180 | 5 | 109 | 368 | 205 | 460 | 3.33e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22833.t1 | AT5G41620 | 36.603 | 418 | 168 | 8 | 9 | 351 | 17 | 412 | 4.16e-68 | 231 |
| MS.gene22833.t1 | AT5G41620 | 42.857 | 294 | 137 | 3 | 85 | 351 | 6 | 295 | 5.04e-64 | 218 |
| MS.gene22833.t1 | AT5G41620 | 42.857 | 294 | 137 | 3 | 85 | 351 | 6 | 295 | 5.04e-64 | 218 |
| MS.gene22833.t1 | AT1G64180 | 31.250 | 560 | 285 | 15 | 55 | 547 | 61 | 587 | 7.24e-58 | 203 |
| MS.gene22833.t1 | AT5G41620 | 46.847 | 222 | 112 | 2 | 132 | 351 | 36 | 253 | 2.27e-54 | 191 |
| MS.gene22833.t1 | AT2G46250 | 35.207 | 338 | 157 | 7 | 20 | 322 | 20 | 330 | 6.91e-41 | 154 |
| MS.gene22833.t1 | AT3G11590 | 29.647 | 425 | 206 | 11 | 6 | 350 | 35 | 446 | 4.94e-35 | 140 |
| MS.gene22833.t1 | AT2G46250 | 40.580 | 207 | 102 | 2 | 116 | 322 | 54 | 239 | 7.77e-33 | 129 |
| MS.gene22833.t1 | AT3G11590 | 33.790 | 219 | 141 | 2 | 132 | 350 | 70 | 284 | 2.54e-27 | 115 |
| MS.gene22833.t1 | AT1G50660 | 27.574 | 272 | 173 | 8 | 122 | 389 | 212 | 463 | 1.89e-25 | 111 |
| MS.gene22833.t1 | AT3G20350 | 24.852 | 338 | 217 | 10 | 68 | 389 | 140 | 456 | 2.57e-24 | 107 |
Find 105 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCCTTGACTTCTTTAA+TGG | 0.167681 | 7.4:+1500063 | None:intergenic |
| GGTGGAAAAGTTGAAACTTT+TGG | 0.234292 | 7.4:-1502085 | MS.gene22833:CDS |
| AGTAAAAGACAATACATTTA+TGG | 0.302608 | 7.4:-1499567 | MS.gene22833:CDS |
| TTCATAATCTCTTACTCCTT+TGG | 0.317548 | 7.4:+1500333 | None:intergenic |
| TCACCCTTGCCTACCTTCAT+TGG | 0.324543 | 7.4:-1500041 | MS.gene22833:CDS |
| GCGGATAAGGATCGCATTAA+TGG | 0.328056 | 7.4:-1500280 | MS.gene22833:CDS |
| GAGGGGAAATCAAGTGAAAT+TGG | 0.348447 | 7.4:-1499896 | MS.gene22833:CDS |
| CCATTCTGCAGTTACAGTTA+AGG | 0.372039 | 7.4:-1499672 | MS.gene22833:CDS |
| ATTGAGCTAAGGCAATTAGA+AGG | 0.381758 | 7.4:+1501088 | None:intergenic |
| TTCTAATTGCCTTAGCTCAA+TGG | 0.385938 | 7.4:-1501086 | MS.gene22833:CDS |
| CACTAGCCAGCTTCTGATAC+AGG | 0.387417 | 7.4:+1500455 | None:intergenic |
| TACTTCACATTTCAGAGGCT+TGG | 0.392687 | 7.4:-1500237 | MS.gene22833:CDS |
| ATTGGATTCCTTTCAACTAA+AGG | 0.395468 | 7.4:-1500023 | MS.gene22833:CDS |
| ACTGCTTGAAGCAAGGTTAG+AGG | 0.396153 | 7.4:-1499540 | MS.gene22833:CDS |
| GAAAATGAATAAGCAGGAAA+TGG | 0.398382 | 7.4:-1500611 | MS.gene22833:CDS |
| CATTCTGCAGTTACAGTTAA+GGG | 0.406187 | 7.4:-1499671 | MS.gene22833:CDS |
| TTGGAGAAGAGAGGAGGAAG+AGG | 0.410484 | 7.4:-1502066 | MS.gene22833:CDS |
| AGACTGAGACATGTTGAAAT+CGG | 0.412710 | 7.4:+1499610 | None:intergenic |
| GAAAAGGGAAGAAGGAATAA+TGG | 0.415845 | 7.4:-1502106 | MS.gene22833:CDS |
| TGTTTCCAACTAACTGTTCA+AGG | 0.418652 | 7.4:+1499759 | None:intergenic |
| TATGCATAATAGTGCGGATA+AGG | 0.427280 | 7.4:-1500293 | MS.gene22833:CDS |
| CACAGCCTTGAACAGTTAGT+TGG | 0.447691 | 7.4:-1499764 | MS.gene22833:CDS |
| TAGCCGGCGTCTTGAAGAAC+AGG | 0.450663 | 7.4:-1500719 | MS.gene22833:CDS |
| TATATCCTGAGAGTATTTGC+AGG | 0.458388 | 7.4:-1499709 | MS.gene22833:CDS |
| CTTAACAAGTGCTTTGTTGA+GGG | 0.464066 | 7.4:-1499914 | MS.gene22833:CDS |
| CCAACAAGTTTGAACAGAAA+AGG | 0.465731 | 7.4:-1499952 | MS.gene22833:CDS |
| TATTGTCTCCTTTAGTTGAA+AGG | 0.466986 | 7.4:+1500015 | None:intergenic |
| ATCAGTCGACAGAAATTGTT+CGG | 0.469683 | 7.4:-1501128 | MS.gene22833:CDS |
| TTTGTCATCAGAAGGTGATA+AGG | 0.472314 | 7.4:-1499732 | MS.gene22833:CDS |
| TATGAGGAGGCTCATGGTGG+TGG | 0.473227 | 7.4:+1501902 | None:intergenic |
| GAAATCTCTGTGCTAAACTC+TGG | 0.476454 | 7.4:-1501936 | MS.gene22833:CDS |
| AACTCTTGTTGATGAGAAGA+AGG | 0.480434 | 7.4:+1501994 | None:intergenic |
| GTGACATGAATTAATTCCCT+TGG | 0.485875 | 7.4:+1499784 | None:intergenic |
| AGAAAAGAAAATGAATAAGC+AGG | 0.487246 | 7.4:-1500617 | MS.gene22833:CDS |
| TTAATGGTGATAGCCTTGAT+AGG | 0.491514 | 7.4:-1500264 | MS.gene22833:CDS |
| TACTTACTTCCATTGAGCTA+AGG | 0.494927 | 7.4:+1501077 | None:intergenic |
| GAGAACCTTGACTAACTCTC+TGG | 0.496123 | 7.4:+1500747 | None:intergenic |
| AAAGTCCACCAGAAAATGAT+AGG | 0.498720 | 7.4:-1499814 | MS.gene22833:CDS |
| CCTTGACTTCTTTAATGGAG+GGG | 0.499105 | 7.4:+1500068 | None:intergenic |
| TCCTTGACTTCTTTAATGGA+GGG | 0.499288 | 7.4:+1500067 | None:intergenic |
| AGGAAGAGATTGAAGATGAA+AGG | 0.499321 | 7.4:-1500501 | MS.gene22833:CDS |
| CTCGAGTCTCTAGCAGATGC+TGG | 0.502686 | 7.4:+1501187 | None:intergenic |
| AAGCAAGTTCAAGATGGTAT+TGG | 0.504529 | 7.4:-1500193 | MS.gene22833:CDS |
| GTCTACTAACAAATTGCCTA+GGG | 0.505083 | 7.4:-1499591 | MS.gene22833:CDS |
| AGAAGAGAGGAGGAAGAGGA+AGG | 0.512890 | 7.4:-1502062 | MS.gene22833:CDS |
| TTCCTTGACTTCTTTAATGG+AGG | 0.515224 | 7.4:+1500066 | None:intergenic |
| GACTGAGACATGTTGAAATC+GGG | 0.515513 | 7.4:+1499611 | None:intergenic |
| CATCACACAAATTCTCCAAA+AGG | 0.518761 | 7.4:+1500362 | None:intergenic |
| AGAAAGCCTGTATCAGAAGC+TGG | 0.520623 | 7.4:-1500461 | MS.gene22833:CDS |
| CACCAGAAAATGATAGGTGC+AGG | 0.525944 | 7.4:-1499808 | MS.gene22833:CDS |
| CCCCTCCATTAAAGAAGTCA+AGG | 0.526840 | 7.4:-1500068 | MS.gene22833:CDS |
| AGTTGAAAGGAATCCAATGA+AGG | 0.527897 | 7.4:+1500028 | None:intergenic |
| TTCAAACTTGTTGGTACCAA+CGG | 0.528206 | 7.4:+1499961 | None:intergenic |
| CAACTATTGAATGTGTCTCT+AGG | 0.530200 | 7.4:+1500161 | None:intergenic |
| TGTGAAGTATTAGCCTATCA+AGG | 0.530785 | 7.4:+1500251 | None:intergenic |
| AACAGTTCTTTGTCATCAGA+AGG | 0.531010 | 7.4:-1499740 | MS.gene22833:CDS |
| AGTCTACTAACAAATTGCCT+AGG | 0.531127 | 7.4:-1499592 | MS.gene22833:CDS |
| AATAGTGAAAGCTCTGATAG+TGG | 0.535399 | 7.4:-1500680 | MS.gene22833:CDS |
| GCTTCCTCGGCAAAATTATG+AGG | 0.538410 | 7.4:+1499986 | None:intergenic |
| GGTACCAACGGAAGCTTCCT+CGG | 0.539258 | 7.4:+1499973 | None:intergenic |
| TGTATGGAGAAAAGGGAAGA+AGG | 0.539368 | 7.4:-1502114 | MS.gene22833:CDS |
| CCTTAACTGTAACTGCAGAA+TGG | 0.540574 | 7.4:+1499672 | None:intergenic |
| TCTTCCCTGCAAATACTCTC+AGG | 0.540737 | 7.4:+1499704 | None:intergenic |
| AAATCTCTGTGCTAAACTCT+GGG | 0.540999 | 7.4:-1501935 | MS.gene22833:CDS |
| ACTTAACAAGTGCTTTGTTG+AGG | 0.542539 | 7.4:-1499915 | MS.gene22833:CDS |
| GTTCAACACCACCACCCACT+TGG | 0.555840 | 7.4:-1502032 | MS.gene22833:CDS |
| TTGAGCTAAGGCAATTAGAA+GGG | 0.559447 | 7.4:+1501089 | None:intergenic |
| TTAACAAGTGCTTTGTTGAG+GGG | 0.561075 | 7.4:-1499913 | MS.gene22833:CDS |
| TGGCAAAACTGCTTGAAGCA+AGG | 0.561650 | 7.4:-1499547 | MS.gene22833:CDS |
| ACAAGTCTCCAAGTGGGTGG+TGG | 0.563442 | 7.4:+1502024 | None:intergenic |
| TCACACAAAGTTGATTCTCT+AGG | 0.566264 | 7.4:+1499845 | None:intergenic |
| ACTAGATCTTTCTCAAACAC+AGG | 0.567197 | 7.4:-1500656 | MS.gene22833:CDS |
| TCAAGGTTCTCAAACGTAGC+CGG | 0.567882 | 7.4:-1500735 | MS.gene22833:CDS |
| GCTAATACTTCACATTTCAG+AGG | 0.570361 | 7.4:-1500242 | MS.gene22833:CDS |
| TCATAGTAGTCCCTCTCACC+AGG | 0.572281 | 7.4:-1501878 | MS.gene22833:intron |
| CAAATGAAGCAAGTTCAAGA+TGG | 0.575876 | 7.4:-1500199 | MS.gene22833:CDS |
| AAATGATAGGTGCAGGACCA+AGG | 0.580181 | 7.4:-1499801 | MS.gene22833:CDS |
| GAGGGACTACTATGACTATG+AGG | 0.581362 | 7.4:+1501886 | None:intergenic |
| GAATCCAATGAAGGTAGGCA+AGG | 0.585447 | 7.4:+1500037 | None:intergenic |
| AAGAGATTGAAGATGAAAGG+AGG | 0.590101 | 7.4:-1500498 | MS.gene22833:CDS |
| AGCTGTAGTTCAATCAGTCA+AGG | 0.591551 | 7.4:-1500521 | MS.gene22833:CDS |
| AATGATAGGTGCAGGACCAA+GGG | 0.594126 | 7.4:-1499800 | MS.gene22833:CDS |
| TATGACTATGAGGAGGCTCA+TGG | 0.595092 | 7.4:+1501896 | None:intergenic |
| ATGAGGAGGCTCATGGTGGT+GGG | 0.595906 | 7.4:+1501903 | None:intergenic |
| AAGAAAAGTACCTGGTGAGA+GGG | 0.598007 | 7.4:+1501868 | None:intergenic |
| CAAGAAAAGTACCTGGTGAG+AGG | 0.598348 | 7.4:+1501867 | None:intergenic |
| GGAAATCAAGTGAAATTGGA+AGG | 0.599065 | 7.4:-1499892 | MS.gene22833:CDS |
| TTCTATTATGCATAATAGTG+CGG | 0.602383 | 7.4:-1500299 | MS.gene22833:CDS |
| TTTGCCGAGGAAGCTTCCGT+TGG | 0.615175 | 7.4:-1499977 | MS.gene22833:CDS |
| GAAAGGAATCCAATGAAGGT+AGG | 0.616541 | 7.4:+1500032 | None:intergenic |
| AAGGGAAGAAGGAATAATGG+TGG | 0.618908 | 7.4:-1502103 | MS.gene22833:CDS |
| CAAGCATCAGTTGTTCAGCA+CGG | 0.633336 | 7.4:-1501154 | MS.gene22833:CDS |
| GTCATCCAGAGAGTTAGTCA+AGG | 0.646355 | 7.4:-1500752 | MS.gene22833:CDS |
| TGAGCTAAGGCAATTAGAAG+GGG | 0.649817 | 7.4:+1501090 | None:intergenic |
| ATATCCTGAGAGTATTTGCA+GGG | 0.650780 | 7.4:-1499708 | MS.gene22833:CDS |
| AATCCAATGAAGGTAGGCAA+GGG | 0.653423 | 7.4:+1500038 | None:intergenic |
| GAAGTGAAGTCTTTGTTACG+TGG | 0.664790 | 7.4:-1500424 | MS.gene22833:CDS |
| TCAACAAGTCTCCAAGTGGG+TGG | 0.665483 | 7.4:+1502021 | None:intergenic |
| AAAGTCAACAAGTCTCCAAG+TGG | 0.666077 | 7.4:+1502017 | None:intergenic |
| AAGTCAACAAGTCTCCAAGT+GGG | 0.688185 | 7.4:+1502018 | None:intergenic |
| GGACTACTATGACTATGAGG+AGG | 0.700817 | 7.4:+1501889 | None:intergenic |
| GACTATGAGGAGGCTCATGG+TGG | 0.712982 | 7.4:+1501899 | None:intergenic |
| CATCCTGTTCTTCAAGACGC+CGG | 0.714018 | 7.4:+1500716 | None:intergenic |
| GTTTGAACAGAAAAGGACTG+CGG | 0.744270 | 7.4:-1499945 | MS.gene22833:CDS |
| TCTACTAACAAATTGCCTAG+GGG | 0.750446 | 7.4:-1499590 | MS.gene22833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATGAAATAAATTTGAAT+AGG | - | chr7.4:1500165-1500184 | MS.gene22833:CDS | 15.0% |
| !! | AAACAGAAATTTCCAATTAT+AGG | + | chr7.4:1499954-1499973 | None:intergenic | 20.0% |
| !! | AGTAAAAGACAATACATTTA+TGG | - | chr7.4:1502043-1502062 | MS.gene22833:CDS | 20.0% |
| !! | AGTTCTATATATCAATTAAG+AGG | - | chr7.4:1500009-1500028 | MS.gene22833:CDS | 20.0% |
| !! | ATTCTTTAACATCAACATTA+GGG | + | chr7.4:1500150-1500169 | None:intergenic | 20.0% |
| !! | GTTCTATATATCAATTAAGA+GGG | - | chr7.4:1500010-1500029 | MS.gene22833:CDS | 20.0% |
| ! | AAACATTAATTCCTAAAGTC+AGG | - | chr7.4:1500304-1500323 | MS.gene22833:CDS | 25.0% |
| ! | AAAGGAAGAACACAATTATA+TGG | + | chr7.4:1500258-1500277 | None:intergenic | 25.0% |
| ! | AATTTCCTTGACTTCTTTAA+TGG | + | chr7.4:1501550-1501569 | None:intergenic | 25.0% |
| ! | AGAAAAGAAAATGAATAAGC+AGG | - | chr7.4:1500993-1501012 | MS.gene22833:intron | 25.0% |
| ! | CATTCTTTAACATCAACATT+AGG | + | chr7.4:1500151-1500170 | None:intergenic | 25.0% |
| ! | TAAACTTCTTGAGATTCAAA+TGG | + | chr7.4:1500572-1500591 | None:intergenic | 25.0% |
| ! | TCAATCACATGTATATTACA+TGG | - | chr7.4:1499852-1499871 | MS.gene22833:CDS | 25.0% |
| ! | TCGAAAGAGAAAAAAAAGAA+AGG | - | chr7.4:1501223-1501242 | MS.gene22833:intron | 25.0% |
| ! | TTCTATTATGCATAATAGTG+CGG | - | chr7.4:1501311-1501330 | MS.gene22833:intron | 25.0% |
| !! | AAAAAAAGAAAGGATCCTTT+TGG | - | chr7.4:1501233-1501252 | MS.gene22833:intron | 25.0% |
| !! | AAAAGTGTATGTAAACTAGA+TGG | - | chr7.4:1500755-1500774 | MS.gene22833:CDS | 25.0% |
| !! | ACACATTCATCTTTTTATAC+CGG | + | chr7.4:1500810-1500829 | None:intergenic | 25.0% |
| !!! | ATATTTTGAATTTCAACTGC+TGG | - | chr7.4:1500376-1500395 | MS.gene22833:CDS | 25.0% |
| !!! | GAAGCATTAAAATTGATTTG+AGG | - | chr7.4:1500670-1500689 | MS.gene22833:CDS | 25.0% |
| !!! | TGTGTTATTTTTCGTAAAAC+AGG | - | chr7.4:1500825-1500844 | MS.gene22833:intron | 25.0% |
| AGTCTTTCAGCTATCAATAA+AGG | + | chr7.4:1500276-1500295 | None:intergenic | 30.0% | |
| ATTCCTCTGATGAAAAATCA+AGG | + | chr7.4:1500098-1500117 | None:intergenic | 30.0% | |
| ATTGGATTCCTTTCAACTAA+AGG | - | chr7.4:1501587-1501606 | MS.gene22833:intron | 30.0% | |
| CTTGATTAAACTACTAGTAC+AGG | + | chr7.4:1499816-1499835 | None:intergenic | 30.0% | |
| GAAAATGAATAAGCAGGAAA+TGG | - | chr7.4:1500999-1501018 | MS.gene22833:intron | 30.0% | |
| GAACACAATTATATGGACAT+TGG | + | chr7.4:1500251-1500270 | None:intergenic | 30.0% | |
| TAGGGATAGTTAATTCGAAA+AGG | + | chr7.4:1500132-1500151 | None:intergenic | 30.0% | |
| TATTGTCTCCTTTAGTTGAA+AGG | + | chr7.4:1501598-1501617 | None:intergenic | 30.0% | |
| TCAAACATAATCCTGACTTT+AGG | + | chr7.4:1500318-1500337 | None:intergenic | 30.0% | |
| TTCATAATCTCTTACTCCTT+TGG | + | chr7.4:1501280-1501299 | None:intergenic | 30.0% | |
| TTCATTAAAAATGCCTCAGA+AGG | + | chr7.4:1500728-1500747 | None:intergenic | 30.0% | |
| ! | ATCTTTTTATACCGGATGAA+AGG | + | chr7.4:1500802-1500821 | None:intergenic | 30.0% |
| ! | TCTTTTTATACCGGATGAAA+GGG | + | chr7.4:1500801-1500820 | None:intergenic | 30.0% |
| ! | TGTTTTCAGATGCCTATAAT+TGG | - | chr7.4:1499939-1499958 | MS.gene22833:CDS | 30.0% |
| ! | TTACATGGCAATGACATTTT+TGG | - | chr7.4:1499867-1499886 | MS.gene22833:CDS | 30.0% |
| !! | TACAAAACAAGAAAAGTACC+TGG | + | chr7.4:1499753-1499772 | None:intergenic | 30.0% |
| !! | TCTGAGGCATTTTTAATGAA+TGG | - | chr7.4:1500728-1500747 | MS.gene22833:CDS | 30.0% |
| !! | TCTGTTTCAGCTTTAAAAGT+TGG | - | chr7.4:1499967-1499986 | MS.gene22833:CDS | 30.0% |
| !!! | GTTTTTTTCGACTGTTTAAC+AGG | + | chr7.4:1501969-1501988 | None:intergenic | 30.0% |
| AAAGTCCACCAGAAAATGAT+AGG | - | chr7.4:1501796-1501815 | MS.gene22833:intron | 35.0% | |
| AAATCTCTGTGCTAAACTCT+GGG | - | chr7.4:1499675-1499694 | MS.gene22833:CDS | 35.0% | |
| AACAGTTCTTTGTCATCAGA+AGG | - | chr7.4:1501870-1501889 | MS.gene22833:intron | 35.0% | |
| AAGAGATTGAAGATGAAAGG+AGG | - | chr7.4:1501112-1501131 | MS.gene22833:CDS | 35.0% | |
| AAGCAAGTTCAAGATGGTAT+TGG | - | chr7.4:1501417-1501436 | MS.gene22833:intron | 35.0% | |
| ACTAGATCTTTCTCAAACAC+AGG | - | chr7.4:1500954-1500973 | MS.gene22833:intron | 35.0% | |
| AGACTGAGACATGTTGAAAT+CGG | + | chr7.4:1502003-1502022 | None:intergenic | 35.0% | |
| AGGAAGAGATTGAAGATGAA+AGG | - | chr7.4:1501109-1501128 | MS.gene22833:CDS | 35.0% | |
| AGTCTACTAACAAATTGCCT+AGG | - | chr7.4:1502018-1502037 | MS.gene22833:CDS | 35.0% | |
| AGTTGAAAGGAATCCAATGA+AGG | + | chr7.4:1501585-1501604 | None:intergenic | 35.0% | |
| ATCAGTCGACAGAAATTGTT+CGG | - | chr7.4:1500482-1500501 | MS.gene22833:CDS | 35.0% | |
| ATTGAGCTAAGGCAATTAGA+AGG | + | chr7.4:1500525-1500544 | None:intergenic | 35.0% | |
| ATTTGAGGAAAATCTCCATG+AGG | - | chr7.4:1500685-1500704 | MS.gene22833:CDS | 35.0% | |
| CAAATGAAGCAAGTTCAAGA+TGG | - | chr7.4:1501411-1501430 | MS.gene22833:intron | 35.0% | |
| CAACTATTGAATGTGTCTCT+AGG | + | chr7.4:1501452-1501471 | None:intergenic | 35.0% | |
| CATCACACAAATTCTCCAAA+AGG | + | chr7.4:1501251-1501270 | None:intergenic | 35.0% | |
| CATTCTGCAGTTACAGTTAA+GGG | - | chr7.4:1501939-1501958 | MS.gene22833:CDS | 35.0% | |
| CCAACAAGTTTGAACAGAAA+AGG | - | chr7.4:1501658-1501677 | MS.gene22833:intron | 35.0% | |
| GAAAAGGGAAGAAGGAATAA+TGG | - | chr7.4:1499504-1499523 | MS.gene22833:CDS | 35.0% | |
| GCTAATACTTCACATTTCAG+AGG | - | chr7.4:1501368-1501387 | MS.gene22833:intron | 35.0% | |
| GGAAATCAAGTGAAATTGGA+AGG | - | chr7.4:1501718-1501737 | MS.gene22833:intron | 35.0% | |
| GTCTACTAACAAATTGCCTA+GGG | - | chr7.4:1502019-1502038 | MS.gene22833:CDS | 35.0% | |
| GTGACATGAATTAATTCCCT+TGG | + | chr7.4:1501829-1501848 | None:intergenic | 35.0% | |
| TACTTACTTCCATTGAGCTA+AGG | + | chr7.4:1500536-1500555 | None:intergenic | 35.0% | |
| TATGCATAATAGTGCGGATA+AGG | - | chr7.4:1501317-1501336 | MS.gene22833:intron | 35.0% | |
| TCCTTGACTTCTTTAATGGA+GGG | + | chr7.4:1501546-1501565 | None:intergenic | 35.0% | |
| TCTACTAACAAATTGCCTAG+GGG | - | chr7.4:1502020-1502039 | MS.gene22833:CDS | 35.0% | |
| TGTTTCCAACTAACTGTTCA+AGG | + | chr7.4:1501854-1501873 | None:intergenic | 35.0% | |
| TTCCTTGACTTCTTTAATGG+AGG | + | chr7.4:1501547-1501566 | None:intergenic | 35.0% | |
| TTCTAATTGCCTTAGCTCAA+TGG | - | chr7.4:1500524-1500543 | MS.gene22833:CDS | 35.0% | |
| TTGAGCTAAGGCAATTAGAA+GGG | + | chr7.4:1500524-1500543 | None:intergenic | 35.0% | |
| TTTGAGGAAAATCTCCATGA+GGG | - | chr7.4:1500686-1500705 | MS.gene22833:CDS | 35.0% | |
| TTTGTCATCAGAAGGTGATA+AGG | - | chr7.4:1501878-1501897 | MS.gene22833:intron | 35.0% | |
| ! | AACTCTTGTTGATGAGAAGA+AGG | + | chr7.4:1499619-1499638 | None:intergenic | 35.0% |
| ! | AATAGTGAAAGCTCTGATAG+TGG | - | chr7.4:1500930-1500949 | MS.gene22833:intron | 35.0% |
| ! | ACTTAACAAGTGCTTTGTTG+AGG | - | chr7.4:1501695-1501714 | MS.gene22833:intron | 35.0% |
| ! | CCTTTTCTGTTCAAACTTGT+TGG | + | chr7.4:1501661-1501680 | None:intergenic | 35.0% |
| ! | CTTAACAAGTGCTTTGTTGA+GGG | - | chr7.4:1501696-1501715 | MS.gene22833:intron | 35.0% |
| ! | GATACTTTTACCCTTTCATC+CGG | - | chr7.4:1500788-1500807 | MS.gene22833:intron | 35.0% |
| ! | GGTGGAAAAGTTGAAACTTT+TGG | - | chr7.4:1499525-1499544 | MS.gene22833:CDS | 35.0% |
| ! | TCACACAAAGTTGATTCTCT+AGG | + | chr7.4:1501768-1501787 | None:intergenic | 35.0% |
| ! | TGTGAAGTATTAGCCTATCA+AGG | + | chr7.4:1501362-1501381 | None:intergenic | 35.0% |
| ! | TTAACAAGTGCTTTGTTGAG+GGG | - | chr7.4:1501697-1501716 | MS.gene22833:intron | 35.0% |
| ! | TTAATGGTGATAGCCTTGAT+AGG | - | chr7.4:1501346-1501365 | MS.gene22833:intron | 35.0% |
| ! | TTGTGTGATGATTTTGCCAA+AGG | - | chr7.4:1501261-1501280 | MS.gene22833:intron | 35.0% |
| !! | AAAAGTTGGTGACTTTGGTT+TGG | - | chr7.4:1499981-1500000 | MS.gene22833:CDS | 35.0% |
| !! | ATATCCTGAGAGTATTTGCA+GGG | - | chr7.4:1501902-1501921 | MS.gene22833:CDS | 35.0% |
| !! | GCTTTAAAAGTTGGTGACTT+TGG | - | chr7.4:1499976-1499995 | MS.gene22833:CDS | 35.0% |
| !! | TATATCCTGAGAGTATTTGC+AGG | - | chr7.4:1501901-1501920 | MS.gene22833:CDS | 35.0% |
| !! | TTCAAACTTGTTGGTACCAA+CGG | + | chr7.4:1501652-1501671 | None:intergenic | 35.0% |
| !! | TTGAAACTTTTGGAGAAGAG+AGG | - | chr7.4:1499535-1499554 | MS.gene22833:CDS | 35.0% |
| !!! | ATTTTCTGGTGGACTTTGTA+CGG | + | chr7.4:1501793-1501812 | None:intergenic | 35.0% |
| AAAGTCAACAAGTCTCCAAG+TGG | + | chr7.4:1499596-1499615 | None:intergenic | 40.0% | |
| AAGGGAAGAAGGAATAATGG+TGG | - | chr7.4:1499507-1499526 | MS.gene22833:CDS | 40.0% | |
| AAGTCAACAAGTCTCCAAGT+GGG | + | chr7.4:1499595-1499614 | None:intergenic | 40.0% | |
| AATCCAATGAAGGTAGGCAA+GGG | + | chr7.4:1501575-1501594 | None:intergenic | 40.0% | |
| AGCTGTAGTTCAATCAGTCA+AGG | - | chr7.4:1501089-1501108 | MS.gene22833:CDS | 40.0% | |
| CCATTCTGCAGTTACAGTTA+AGG | - | chr7.4:1501938-1501957 | MS.gene22833:CDS | 40.0% | |
| CCTTAACTGTAACTGCAGAA+TGG | + | chr7.4:1501941-1501960 | None:intergenic | 40.0% | |
| CCTTGACTTCTTTAATGGAG+GGG | + | chr7.4:1501545-1501564 | None:intergenic | 40.0% | |
| GAAAGGAATCCAATGAAGGT+AGG | + | chr7.4:1501581-1501600 | None:intergenic | 40.0% | |
| GAAATCTCTGTGCTAAACTC+TGG | - | chr7.4:1499674-1499693 | MS.gene22833:CDS | 40.0% | |
| GAAGTGAAGTCTTTGTTACG+TGG | - | chr7.4:1501186-1501205 | MS.gene22833:CDS | 40.0% | |
| GACTGAGACATGTTGAAATC+GGG | + | chr7.4:1502002-1502021 | None:intergenic | 40.0% | |
| GAGGGGAAATCAAGTGAAAT+TGG | - | chr7.4:1501714-1501733 | MS.gene22833:intron | 40.0% | |
| GTTTGAACAGAAAAGGACTG+CGG | - | chr7.4:1501665-1501684 | MS.gene22833:intron | 40.0% | |
| TACTTCACATTTCAGAGGCT+TGG | - | chr7.4:1501373-1501392 | MS.gene22833:intron | 40.0% | |
| TGAGCTAAGGCAATTAGAAG+GGG | + | chr7.4:1500523-1500542 | None:intergenic | 40.0% | |
| ! | GCTCCTTGATTTTTCATCAG+AGG | - | chr7.4:1500092-1500111 | MS.gene22833:CDS | 40.0% |
| ! | GTATTGTCTTTTACTCCCCT+AGG | + | chr7.4:1502038-1502057 | None:intergenic | 40.0% |
| ! | TTCACCTCATAATTTTGCCG+AGG | - | chr7.4:1501620-1501639 | MS.gene22833:intron | 40.0% |
| !! | AAACTTTTGGAGAAGAGAGG+AGG | - | chr7.4:1499538-1499557 | MS.gene22833:CDS | 40.0% |
| !! | AAGAAAAGTACCTGGTGAGA+GGG | + | chr7.4:1499745-1499764 | None:intergenic | 40.0% |
| !!! | GCAGAGAGTGTTTTTGAAGT+GGG | + | chr7.4:1499652-1499671 | None:intergenic | 40.0% |
| !!! | TGCAGAGAGTGTTTTTGAAG+TGG | + | chr7.4:1499653-1499672 | None:intergenic | 40.0% |
| AAATGATAGGTGCAGGACCA+AGG | - | chr7.4:1501809-1501828 | MS.gene22833:intron | 45.0% | |
| AATGATAGGTGCAGGACCAA+GGG | - | chr7.4:1501810-1501829 | MS.gene22833:intron | 45.0% | |
| ACTGCTTGAAGCAAGGTTAG+AGG | - | chr7.4:1502070-1502089 | MS.gene22833:CDS | 45.0% | |
| AGAAAGCCTGTATCAGAAGC+TGG | - | chr7.4:1501149-1501168 | MS.gene22833:CDS | 45.0% | |
| CAAGCATCAGTTGTTCAGCA+CGG | - | chr7.4:1500456-1500475 | MS.gene22833:CDS | 45.0% | |
| CACAGCCTTGAACAGTTAGT+TGG | - | chr7.4:1501846-1501865 | MS.gene22833:intron | 45.0% | |
| CACCAGAAAATGATAGGTGC+AGG | - | chr7.4:1501802-1501821 | MS.gene22833:intron | 45.0% | |
| CATCGACGATAAATCCCTCA+TGG | + | chr7.4:1500703-1500722 | None:intergenic | 45.0% | |
| CCCCTCCATTAAAGAAGTCA+AGG | - | chr7.4:1501542-1501561 | MS.gene22833:intron | 45.0% | |
| GAATCCAATGAAGGTAGGCA+AGG | + | chr7.4:1501576-1501595 | None:intergenic | 45.0% | |
| GAGAACCTTGACTAACTCTC+TGG | + | chr7.4:1500866-1500885 | None:intergenic | 45.0% | |
| GAGGGACTACTATGACTATG+AGG | + | chr7.4:1499727-1499746 | None:intergenic | 45.0% | |
| GCGGATAAGGATCGCATTAA+TGG | - | chr7.4:1501330-1501349 | MS.gene22833:intron | 45.0% | |
| GCTTCCTCGGCAAAATTATG+AGG | + | chr7.4:1501627-1501646 | None:intergenic | 45.0% | |
| GGACTACTATGACTATGAGG+AGG | + | chr7.4:1499724-1499743 | None:intergenic | 45.0% | |
| GTACGTCAGCTCTCTTCATA+AGG | + | chr7.4:1500218-1500237 | None:intergenic | 45.0% | |
| GTCATCCAGAGAGTTAGTCA+AGG | - | chr7.4:1500858-1500877 | MS.gene22833:intron | 45.0% | |
| TATCGTCGATGATCCTTCTG+AGG | - | chr7.4:1500712-1500731 | MS.gene22833:CDS | 45.0% | |
| TATGACTATGAGGAGGCTCA+TGG | + | chr7.4:1499717-1499736 | None:intergenic | 45.0% | |
| TCAAGGTTCTCAAACGTAGC+CGG | - | chr7.4:1500875-1500894 | MS.gene22833:intron | 45.0% | |
| TCTTCCCTGCAAATACTCTC+AGG | + | chr7.4:1501909-1501928 | None:intergenic | 45.0% | |
| TGGCAAAACTGCTTGAAGCA+AGG | - | chr7.4:1502063-1502082 | MS.gene22833:CDS | 45.0% | |
| ! | CTGCACCTATCATTTTCTGG+TGG | + | chr7.4:1501804-1501823 | None:intergenic | 45.0% |
| ! | GTCCTGCACCTATCATTTTC+TGG | + | chr7.4:1501807-1501826 | None:intergenic | 45.0% |
| !! | CAAGAAAAGTACCTGGTGAG+AGG | + | chr7.4:1499746-1499765 | None:intergenic | 45.0% |
| !! | AAAAAAAAATTAATTGAAAA+TGG | + | chr7.4:1499777-1499796 | None:intergenic | 5.0% |
| AGAAGAGAGGAGGAAGAGGA+AGG | - | chr7.4:1499548-1499567 | MS.gene22833:CDS | 50.0% | |
| CACTAGCCAGCTTCTGATAC+AGG | + | chr7.4:1501158-1501177 | None:intergenic | 50.0% | |
| CATCCTGTTCTTCAAGACGC+CGG | + | chr7.4:1500897-1500916 | None:intergenic | 50.0% | |
| TCAACAAGTCTCCAAGTGGG+TGG | + | chr7.4:1499592-1499611 | None:intergenic | 50.0% | |
| TCACCCTTGCCTACCTTCAT+TGG | - | chr7.4:1501569-1501588 | MS.gene22833:intron | 50.0% | |
| TCATAGTAGTCCCTCTCACC+AGG | - | chr7.4:1499732-1499751 | MS.gene22833:CDS | 50.0% | |
| TTGGAGAAGAGAGGAGGAAG+AGG | - | chr7.4:1499544-1499563 | MS.gene22833:CDS | 50.0% | |
| ! | AGCAGATGCTGGCTGTATTG+CGG | + | chr7.4:1500415-1500434 | None:intergenic | 50.0% |
| ACAAGTCTCCAAGTGGGTGG+TGG | + | chr7.4:1499589-1499608 | None:intergenic | 55.0% | |
| ATGAGGAGGCTCATGGTGGT+GGG | + | chr7.4:1499710-1499729 | None:intergenic | 55.0% | |
| CTCGAGTCTCTAGCAGATGC+TGG | + | chr7.4:1500426-1500445 | None:intergenic | 55.0% | |
| GACTATGAGGAGGCTCATGG+TGG | + | chr7.4:1499714-1499733 | None:intergenic | 55.0% | |
| GGTACCAACGGAAGCTTCCT+CGG | + | chr7.4:1501640-1501659 | None:intergenic | 55.0% | |
| GTTCAACACCACCACCCACT+TGG | - | chr7.4:1499578-1499597 | MS.gene22833:CDS | 55.0% | |
| TAGCCGGCGTCTTGAAGAAC+AGG | - | chr7.4:1500891-1500910 | MS.gene22833:intron | 55.0% | |
| TATGAGGAGGCTCATGGTGG+TGG | + | chr7.4:1499711-1499730 | None:intergenic | 55.0% | |
| TTTGCCGAGGAAGCTTCCGT+TGG | - | chr7.4:1501633-1501652 | MS.gene22833:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1499499 | 1502133 | 1499499 | ID=MS.gene22833 |
| chr7.4 | mRNA | 1499499 | 1502133 | 1499499 | ID=MS.gene22833.t1;Parent=MS.gene22833 |
| chr7.4 | exon | 1501879 | 1502133 | 1501879 | ID=MS.gene22833.t1.exon1;Parent=MS.gene22833.t1 |
| chr7.4 | CDS | 1501879 | 1502133 | 1501879 | ID=cds.MS.gene22833.t1;Parent=MS.gene22833.t1 |
| chr7.4 | exon | 1501084 | 1501209 | 1501084 | ID=MS.gene22833.t1.exon2;Parent=MS.gene22833.t1 |
| chr7.4 | CDS | 1501084 | 1501209 | 1501084 | ID=cds.MS.gene22833.t1;Parent=MS.gene22833.t1 |
| chr7.4 | exon | 1499499 | 1500785 | 1499499 | ID=MS.gene22833.t1.exon3;Parent=MS.gene22833.t1 |
| chr7.4 | CDS | 1499499 | 1500785 | 1499499 | ID=cds.MS.gene22833.t1;Parent=MS.gene22833.t1 |
| Gene Sequence |
| Protein sequence |
