Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23094.t1 | ABD33215.1 | 78.9 | 194 | 22 | 2 | 3 | 182 | 132 | 320 | 1.00E-74 | 290 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23094.t1 | Q9UKJ3 | 40.4 | 141 | 69 | 3 | 61 | 186 | 29 | 169 | 1.1e-19 | 98.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23094.t1 | G7KWE6 | 78.9 | 194 | 22 | 2 | 3 | 182 | 134 | 322 | 7.5e-75 | 290.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene23094 | 0.804332 | 2.27E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene23094 | 0.829751 | 4.32E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene23094 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene23094 | 0.810905 | 9.14E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene23094 | 0.81443 | 1.55E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene23094 | 0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene23094 | 0.807605 | 4.66E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene23094 | 0.813132 | 2.99E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene23094 | 0.813533 | 2.44E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene23094 | 0.809121 | 2.21E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene23094 | 0.810257 | 1.26E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene23094 | 0.82619 | 3.11E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene23094 | 0.806636 | 7.47E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene23094 | 0.837164 | 6.11E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene23094 | 0.820927 | 5.30E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene23094 | 0.818933 | 1.51E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene23094 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene23094 | 0.831462 | 1.65E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene23094 | 0.816593 | 5.11E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene23094 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene23094 | 0.809248 | 2.08E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene23094 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene23094 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene23094 | 0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene23094 | 0.812929 | 3.31E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene23094 | 0.838247 | 3.22E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene23094 | 0.827431 | 1.57E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23094.t1 | MTR_7g111520 | 79.705 | 271 | 31 | 3 | 3 | 254 | 134 | 399 | 1.47e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23094.t1 | AT5G26610 | 57.252 | 262 | 88 | 4 | 17 | 254 | 4 | 265 | 1.57e-88 | 265 |
| MS.gene23094.t1 | AT5G26610 | 57.252 | 262 | 88 | 4 | 17 | 254 | 4 | 265 | 1.57e-88 | 265 |
| MS.gene23094.t1 | AT5G26610 | 57.252 | 262 | 88 | 4 | 17 | 254 | 4 | 265 | 1.57e-88 | 265 |
Find 0 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTAATAATGATGAA+TGG | - | 50602:13219-13238 | MS.gene23094:intergenic | 10.0% |
| !!! | ATTATTTTTTTATAAAACCA+GGG | - | 50602:14404-14423 | MS.gene23094:intergenic | 10.0% |
| !! | ATAAATTGTACATGTTTATA+TGG | - | 50602:13530-13549 | MS.gene23094:intergenic | 15.0% |
| !! | ATATTATATATACCCATATA+TGG | + | 50602:14568-14587 | MS.gene23094:intron | 15.0% |
| !! | TATTATATATACCCATATAT+GGG | + | 50602:14569-14588 | MS.gene23094:intron | 15.0% |
| !!! | CATTATTTTTTTATAAAACC+AGG | - | 50602:14405-14424 | MS.gene23094:intergenic | 15.0% |
| !!! | GAATCAAAAATACTTTATTT+TGG | + | 50602:14632-14651 | MS.gene23094:intron | 15.0% |
| !!! | TTTTTCAAAATAATGACAAT+GGG | + | 50602:14032-14051 | MS.gene23094:intron | 15.0% |
| !!! | TTTTTTCAAAATAATGACAA+TGG | + | 50602:14031-14050 | MS.gene23094:intron | 15.0% |
| !! | AATTGAAATTGAAATTGTTC+AGG | + | 50602:13252-13271 | MS.gene23094:intron | 20.0% |
| !! | ACTAGATATTTAATCTATGA+AGG | - | 50602:13566-13585 | MS.gene23094:intergenic | 20.0% |
| !! | ATATTTAATCTATGAAGGTA+AGG | - | 50602:13561-13580 | MS.gene23094:intergenic | 20.0% |
| !! | ATTTGTTTACAATTGAGATT+GGG | + | 50602:14329-14348 | MS.gene23094:intron | 20.0% |
| !! | CAAATATAAATCAATTATCC+AGG | - | 50602:14314-14333 | MS.gene23094:intergenic | 20.0% |
| !! | TAATGGAAATATTCATAGTT+TGG | + | 50602:13999-14018 | MS.gene23094:intron | 20.0% |
| !! | TATTTGTTTACAATTGAGAT+TGG | + | 50602:14328-14347 | MS.gene23094:intron | 20.0% |
| !! | TTTAAGCTTCTTCAAAAAAT+GGG | + | 50602:13391-13410 | MS.gene23094:CDS | 20.0% |
| !!! | AAAATCATATAGTAGTTTTG+AGG | + | 50602:14888-14907 | MS.gene23094:intron | 20.0% |
| !!! | AAATAATTTTAACAGGCAAA+AGG | - | 50602:15463-15482 | MS.gene23094:intergenic | 20.0% |
| !!! | AATGAACAATTATTTCTCTT+TGG | + | 50602:14068-14087 | MS.gene23094:intron | 20.0% |
| !!! | TCTATTTTCGTAAATAACAA+AGG | - | 50602:14119-14138 | MS.gene23094:intergenic | 20.0% |
| !!! | TTAATTGTAATGGAACATTA+TGG | + | 50602:14499-14518 | MS.gene23094:intron | 20.0% |
| !!! | TTTTAAGCTTCTTCAAAAAA+TGG | + | 50602:13390-13409 | MS.gene23094:CDS | 20.0% |
| ! | AAAAAAACTCGATATTGAGT+TGG | + | 50602:14789-14808 | MS.gene23094:CDS | 25.0% |
| ! | ACTACCCTAAAATATAACAA+AGG | - | 50602:13611-13630 | MS.gene23094:intergenic | 25.0% |
| ! | ATTGTTGAACCAATAAAATC+TGG | + | 50602:14691-14710 | MS.gene23094:CDS | 25.0% |
| ! | CACATTACTTCTTCTAATAT+TGG | + | 50602:13367-13386 | MS.gene23094:CDS | 25.0% |
| ! | CTTTCATTTCATTATACACA+TGG | - | 50602:13479-13498 | MS.gene23094:intergenic | 25.0% |
| ! | TTGCACTTACTTAATTGTAA+TGG | + | 50602:14489-14508 | MS.gene23094:intron | 25.0% |
| ! | TTGTTGAACCAATAAAATCT+GGG | + | 50602:14692-14711 | MS.gene23094:CDS | 25.0% |
| !! | CATTTTATCTAACACTAACT+TGG | + | 50602:15249-15268 | MS.gene23094:intron | 25.0% |
| !!! | GACACCTTTGTTATATTTTA+GGG | + | 50602:13604-13623 | MS.gene23094:intron | 25.0% |
| AAACCAATTCAAAAAGGATC+AGG | + | 50602:13173-13192 | MS.gene23094:CDS | 30.0% | |
| AAAGGAAAACAAGTCTGAAA+GGG | - | 50602:14101-14120 | MS.gene23094:intergenic | 30.0% | |
| AACAGCCTCTTATATTCTAT+TGG | - | 50602:13949-13968 | MS.gene23094:intergenic | 30.0% | |
| AACCAAAAAGGAAGATATCA+TGG | - | 50602:15590-15609 | MS.gene23094:intergenic | 30.0% | |
| ACCAAAAAGGAAGATATCAT+GGG | - | 50602:15589-15608 | MS.gene23094:intergenic | 30.0% | |
| ACCCATAGCCAAAATAAAAT+GGG | - | 50602:15503-15522 | MS.gene23094:intergenic | 30.0% | |
| ATATATACCCATATATGGGA+GGG | + | 50602:14573-14592 | MS.gene23094:intron | 30.0% | |
| ATATTCATAGTTTGGCGAAA+TGG | + | 50602:14007-14026 | MS.gene23094:intron | 30.0% | |
| ATCAGAATCAAGTCAACAAA+AGG | - | 50602:15276-15295 | MS.gene23094:intergenic | 30.0% | |
| ATGCAATCAAATCCCAAATA+GGG | - | 50602:14272-14291 | MS.gene23094:intergenic | 30.0% | |
| CAAAGAAATGAAGAAATGCA+TGG | + | 50602:15357-15376 | MS.gene23094:CDS | 30.0% | |
| CTACACCAATAGAATATAAG+AGG | + | 50602:13941-13960 | MS.gene23094:intron | 30.0% | |
| TATATATACCCATATATGGG+AGG | + | 50602:14572-14591 | MS.gene23094:intron | 30.0% | |
| TATGCAATCAAATCCCAAAT+AGG | - | 50602:14273-14292 | MS.gene23094:intergenic | 30.0% | |
| TATTCATAGTTTGGCGAAAT+GGG | + | 50602:14008-14027 | MS.gene23094:intron | 30.0% | |
| TCAGAATCAAGTCAACAAAA+GGG | - | 50602:15275-15294 | MS.gene23094:intergenic | 30.0% | |
| TTAAGTAAGTGCAAATACAG+AGG | - | 50602:14483-14502 | MS.gene23094:intergenic | 30.0% | |
| ! | AAAACCATAGTGTTATTCAG+TGG | + | 50602:13788-13807 | MS.gene23094:intron | 30.0% |
| ! | ATATATGCATGCCTTTTTAC+CGG | + | 50602:14965-14984 | MS.gene23094:intron | 30.0% |
| ! | CATCAAAGTCAAAGTACTTT+CGG | - | 50602:14608-14627 | MS.gene23094:intergenic | 30.0% |
| ! | TAGTAGTTTGTCATAAGCAA+CGG | + | 50602:13582-13601 | MS.gene23094:intron | 30.0% |
| ! | TATTTGGGATTTGATTGCAT+AGG | + | 50602:14272-14291 | MS.gene23094:intron | 30.0% |
| ! | TCAATGATTTTGCATTACGT+AGG | - | 50602:15318-15337 | MS.gene23094:intergenic | 30.0% |
| ! | TCTCTAATCCCAGATTTTAT+TGG | - | 50602:14703-14722 | MS.gene23094:intergenic | 30.0% |
| !! | AGCGAAATACTTTGAAGTTT+GGG | + | 50602:15738-15757 | MS.gene23094:CDS | 30.0% |
| !! | GGACACCTTTGTTATATTTT+AGG | + | 50602:13603-13622 | MS.gene23094:intron | 30.0% |
| !! | TCAAAAAAATGGATTACCGA+TGG | + | 50602:13085-13104 | MS.gene23094:CDS | 30.0% |
| !! | TTGTTGACTTGATTCTGATT+TGG | + | 50602:15277-15296 | MS.gene23094:intron | 30.0% |
| !!! | ATTTTATTTTGGCTATGGGT+GGG | + | 50602:15503-15522 | MS.gene23094:intron | 30.0% |
| !!! | CTCAAAGAACACTAGTTTTA+GGG | + | 50602:13969-13988 | MS.gene23094:intron | 30.0% |
| !!! | TCTCAAAGAACACTAGTTTT+AGG | + | 50602:13968-13987 | MS.gene23094:intron | 30.0% |
| AAAATAAAATGGGGCAAGCA+AGG | - | 50602:15493-15512 | MS.gene23093:intergenic | 35.0% | |
| AAACCGAGGTGAAAGAAATT+CGG | + | 50602:15127-15146 | MS.gene23094:intron | 35.0% | |
| AAAGCCACTGAATAACACTA+TGG | - | 50602:13795-13814 | MS.gene23094:intergenic | 35.0% | |
| AACAGGCAAAAGGATACATT+TGG | - | 50602:15453-15472 | MS.gene23094:intergenic | 35.0% | |
| ACAATTGAGATTGGGATAGT+TGG | + | 50602:14337-14356 | MS.gene23094:intron | 35.0% | |
| ACAGGCAAAAGGATACATTT+GGG | - | 50602:15452-15471 | MS.gene23094:intergenic | 35.0% | |
| ACCAGGTTAATAAAAACTGC+AGG | - | 50602:15039-15058 | MS.gene23094:intergenic | 35.0% | |
| AGCTTCTTCAAAAAATGGGT+TGG | + | 50602:13395-13414 | MS.gene23094:CDS | 35.0% | |
| AGTAGTAAGCATGATTCTTC+TGG | + | 50602:13141-13160 | MS.gene23094:CDS | 35.0% | |
| ATCATGGGTAAGAGTAAAGT+TGG | - | 50602:15574-15593 | MS.gene23094:intergenic | 35.0% | |
| ATTGTTCATTCGCGAAACTT+AGG | - | 50602:14058-14077 | MS.gene23094:intergenic | 35.0% | |
| CAAAGGAAAACAAGTCTGAA+AGG | - | 50602:14102-14121 | MS.gene23094:intergenic | 35.0% | |
| CAAGCAATACAAATTGGCAA+TGG | + | 50602:15177-15196 | MS.gene23094:CDS | 35.0% | |
| CAATTCAAAAAGGATCAGGT+TGG | + | 50602:13177-13196 | MS.gene23094:intron | 35.0% | |
| CACCCATAGCCAAAATAAAA+TGG | - | 50602:15504-15523 | MS.gene23094:intergenic | 35.0% | |
| CCCATAGCCAAAATAAAATG+GGG | - | 50602:15502-15521 | MS.gene23094:intergenic | 35.0% | |
| CGTGCACAATTTGAAAATTC+AGG | + | 50602:15077-15096 | MS.gene23094:intron | 35.0% | |
| CTGCAACAAGCAATACAAAT+TGG | + | 50602:15171-15190 | MS.gene23094:CDS | 35.0% | |
| GTTCTTATGATCACAATCAC+AGG | + | 50602:15218-15237 | MS.gene23094:CDS | 35.0% | |
| TCAAGATCTTCCAAAGTTGA+TGG | - | 50602:15010-15029 | MS.gene23094:intergenic | 35.0% | |
| TCAATTATCCAGGAAGAAGA+CGG | - | 50602:14304-14323 | MS.gene23094:intergenic | 35.0% | |
| TCATAAGGAACCATCAACTT+TGG | + | 50602:14997-15016 | MS.gene23094:intron | 35.0% | |
| TGAGCAAAAAATTCAAACCG+AGG | + | 50602:15113-15132 | MS.gene23094:intron | 35.0% | |
| TGCAATCAAATCCCAAATAG+GGG | - | 50602:14271-14290 | MS.gene23094:intergenic | 35.0% | |
| TGGCATTAAGGAAACCAAAA+AGG | - | 50602:15602-15621 | MS.gene23094:intergenic | 35.0% | |
| TTATGATCACAATCACAGGA+AGG | + | 50602:15222-15241 | MS.gene23094:CDS | 35.0% | |
| TTCCTTATGACATACCAATC+CGG | - | 50602:14987-15006 | MS.gene23094:intergenic | 35.0% | |
| TTGCAAAATTGTGTGCAGAA+TGG | + | 50602:13650-13669 | MS.gene23094:intron | 35.0% | |
| ! | ACCCATGATATCTTCCTTTT+TGG | + | 50602:15585-15604 | MS.gene23094:intron | 35.0% |
| ! | CAACCTGATCCTTTTTGAAT+TGG | - | 50602:13179-13198 | MS.gene23094:intergenic | 35.0% |
| ! | GAACAAAGAAGCATGAAAGA+AGG | + | 50602:13864-13883 | MS.gene23094:intron | 35.0% |
| ! | TCCTGCAGTTTTTATTAACC+TGG | + | 50602:15035-15054 | MS.gene23094:intron | 35.0% |
| ! | TGCACACAATTTTGCAATTG+TGG | - | 50602:13647-13666 | MS.gene23094:intergenic | 35.0% |
| ! | TGCAGTTTTTATTAACCTGG+TGG | + | 50602:15038-15057 | MS.gene23094:intron | 35.0% |
| !! | AAAAATGGGTTGGAAAGGAA+AGG | + | 50602:13405-13424 | MS.gene23094:CDS | 35.0% |
| !! | AAAACTCGATATTGAGTTGG+AGG | + | 50602:14792-14811 | MS.gene23094:CDS | 35.0% |
| !! | AAAATGGGTTGGAAAGGAAA+GGG | + | 50602:13406-13425 | MS.gene23094:CDS | 35.0% |
| !! | CAGCGAAATACTTTGAAGTT+TGG | + | 50602:15737-15756 | MS.gene23094:CDS | 35.0% |
| !! | CCTTTTTGAATTGGTTTCTC+CGG | - | 50602:13170-13189 | MS.gene23094:intergenic | 35.0% |
| !! | CTTCAAAAAATGGGTTGGAA+AGG | + | 50602:13400-13419 | MS.gene23094:CDS | 35.0% |
| !! | CTTTTTGAATTGGTTTCTCC+GGG | - | 50602:13169-13188 | MS.gene23094:intergenic | 35.0% |
| !! | TTGCTTGCCCCATTTTATTT+TGG | + | 50602:15492-15511 | MS.gene23094:intron | 35.0% |
| !!! | AGAACACTAGTTTTAGGGTT+CGG | + | 50602:13974-13993 | MS.gene23094:intron | 35.0% |
| !!! | CAATATCGAGTTTTTTTCGC+TGG | - | 50602:14786-14805 | MS.gene23094:intergenic | 35.0% |
| !!! | CATTTTATTTTGGCTATGGG+TGG | + | 50602:15502-15521 | MS.gene23094:intron | 35.0% |
| !!! | CCCCATTTTATTTTGGCTAT+GGG | + | 50602:15499-15518 | MS.gene23094:intron | 35.0% |
| ACAACAATGATTCCCTTACG+TGG | - | 50602:15540-15559 | MS.gene23094:intergenic | 40.0% | |
| ACATGAAGAAATGAATGCCG+CGG | + | 50602:13891-13910 | MS.gene23094:intron | 40.0% | |
| AGCAGCTATATGCCAGTATT+AGG | - | 50602:13691-13710 | MS.gene23094:intergenic | 40.0% | |
| AGTAGCAGTCTTAGATTCAG+AGG | - | 50602:15699-15718 | MS.gene23094:intergenic | 40.0% | |
| ATAGCGGTATAGTATGTAGC+AGG | - | 50602:14222-14241 | MS.gene23094:intergenic | 40.0% | |
| CCGGAGAAACCAATTCAAAA+AGG | + | 50602:13167-13186 | MS.gene23094:CDS | 40.0% | |
| CTGCTGCAATTGCTAAGTAT+GGG | + | 50602:13706-13725 | MS.gene23094:intron | 40.0% | |
| CTTCCGAATTTCTTTCACCT+CGG | - | 50602:15133-15152 | MS.gene23094:intergenic | 40.0% | |
| GACATACCAATCCGGTAAAA+AGG | - | 50602:14979-14998 | MS.gene23094:intergenic | 40.0% | |
| GACTTTCTGAACATGTATGC+AGG | + | 50602:14667-14686 | MS.gene23094:intron | 40.0% | |
| GATTAGAGATCCAAGACTAG+GGG | + | 50602:14714-14733 | MS.gene23094:CDS | 40.0% | |
| GATTCAGAGGAAACTGAAAC+TGG | - | 50602:15686-15705 | MS.gene23094:intergenic | 40.0% | |
| GGATTAGAGATCCAAGACTA+GGG | + | 50602:14713-14732 | MS.gene23094:CDS | 40.0% | |
| GGTATAGTATGTAGCAGGAT+GGG | - | 50602:14217-14236 | MS.gene23094:intergenic | 40.0% | |
| TGCTGCAATTGCTAAGTATG+GGG | + | 50602:13707-13726 | MS.gene23094:intron | 40.0% | |
| TTTCAAATTGTGCACGAAGC+AGG | - | 50602:15073-15092 | MS.gene23094:intergenic | 40.0% | |
| ! | AAAGCATCCCTCCCATATAT+GGG | - | 50602:14583-14602 | MS.gene23094:intergenic | 40.0% |
| ! | TCCAGATCAACGTTTTCAGT+TGG | - | 50602:13319-13338 | MS.gene23094:intergenic | 40.0% |
| !! | ACTTTGAAGAGCATTAGCTG+GGG | - | 50602:14380-14399 | MS.gene23094:intergenic | 40.0% |
| !! | ATACCGCTATCCCATTTTTG+TGG | + | 50602:14232-14251 | MS.gene23094:intron | 40.0% |
| !! | ATCAGCACTGATTGGCATTA+AGG | - | 50602:15614-15633 | MS.gene23094:intergenic | 40.0% |
| !! | CACTTTGAAGAGCATTAGCT+GGG | - | 50602:14381-14400 | MS.gene23094:intergenic | 40.0% |
| !! | TACCGGATTGGTATGTCATA+AGG | + | 50602:14982-15001 | MS.gene23094:intron | 40.0% |
| !! | TCAGTTGGCCTTTGATTTCT+GGG | - | 50602:13304-13323 | MS.gene23094:intergenic | 40.0% |
| !! | TTCAGTTGGCCTTTGATTTC+TGG | - | 50602:13305-13324 | MS.gene23094:intergenic | 40.0% |
| !!! | AGTTTTAGGGTTCGGTCTAA+TGG | + | 50602:13982-14001 | MS.gene23094:intron | 40.0% |
| !!! | GCCCCATTTTATTTTGGCTA+TGG | + | 50602:15498-15517 | MS.gene23094:intron | 40.0% |
| !!! | TTTTGAGCATCAGCACTGAT+TGG | - | 50602:15622-15641 | MS.gene23094:intergenic | 40.0% |
| AGTATTAGGCATCACAGCAG+AGG | - | 50602:13677-13696 | MS.gene23094:intergenic | 45.0% | |
| CGAGGTGAAAGAAATTCGGA+AGG | + | 50602:15131-15150 | MS.gene23094:intron | 45.0% | |
| CGGTATAGTATGTAGCAGGA+TGG | - | 50602:14218-14237 | MS.gene23094:intergenic | 45.0% | |
| CTGATGCTCAAAAGCAGCAA+CGG | + | 50602:15629-15648 | MS.gene23094:intron | 45.0% | |
| GCAGCGTCAAGAAAGAGAAT+TGG | + | 50602:15417-15436 | MS.gene23094:CDS | 45.0% | |
| GCCAACTGAAAACGTTGATC+TGG | + | 50602:13315-13334 | MS.gene23094:CDS | 45.0% | |
| GCTGCTGCAATTGCTAAGTA+TGG | + | 50602:13705-13724 | MS.gene23094:intron | 45.0% | |
| GGGATTAGAGATCCAAGACT+AGG | + | 50602:14712-14731 | MS.gene23094:CDS | 45.0% | |
| GGTCTTGGCAAACATGAACA+AGG | + | 50602:13427-13446 | MS.gene23094:CDS | 45.0% | |
| GTTCTATGTTGGCCACGTAA+GGG | + | 50602:15525-15544 | MS.gene23094:intron | 45.0% | |
| TCAAATCCCAAATAGGGGCA+CGG | - | 50602:14266-14285 | MS.gene23094:intergenic | 45.0% | |
| TCTGCTGTGATGCCTAATAC+TGG | + | 50602:13676-13695 | MS.gene23094:intron | 45.0% | |
| TGCTACTGCACTTACAGATC+AGG | + | 50602:15712-15731 | MS.gene23094:CDS | 45.0% | |
| TGGCCACAAAAATGGGATAG+CGG | - | 50602:14238-14257 | MS.gene23094:intergenic | 45.0% | |
| TGTTCAGGCATACGATGATG+AGG | + | 50602:13267-13286 | MS.gene23094:intron | 45.0% | |
| TTCAACTGCAACAAGAGTCC+TGG | + | 50602:15653-15672 | MS.gene23094:CDS | 45.0% | |
| TTCGCTTGCCCAGAAATCAA+AGG | + | 50602:13293-13312 | MS.gene23094:CDS | 45.0% | |
| ! | ATGGATTACCGATGGACCAA+AGG | + | 50602:13093-13112 | MS.gene23094:CDS | 45.0% |
| ! | CATTTTCTCAAACCTGCACC+TGG | + | 50602:14921-14940 | MS.gene23094:intron | 45.0% |
| ! | TAATGCTCTTCAAAGTGCCC+TGG | + | 50602:14384-14403 | MS.gene23094:intron | 45.0% |
| ! | TGCATGCCTTTTTACCGGAT+TGG | + | 50602:14970-14989 | MS.gene23094:intron | 45.0% |
| ! | TGTTCCTTTTCTGCACGTGA+AGG | - | 50602:13849-13868 | MS.gene23094:intergenic | 45.0% |
| !! | GAAAGCATCCCTCCCATATA+TGG | - | 50602:14584-14603 | MS.gene23094:intergenic | 45.0% |
| !! | GCACTTTGAAGAGCATTAGC+TGG | - | 50602:14382-14401 | MS.gene23094:intergenic | 45.0% |
| !! | TATTGAGTTGGAGGAGACAG+AGG | + | 50602:14801-14820 | MS.gene23094:CDS | 45.0% |
| !!! | AATATTAAAATAATTTTAAC+AGG | - | 50602:15470-15489 | MS.gene23094:intergenic | 5.0% |
| AATGCATGGCAGCAGTAAGC+CGG | + | 50602:15371-15390 | MS.gene23094:CDS | 50.0% | |
| AGAGATCCAAGACTAGGGGT+CGG | + | 50602:14718-14737 | MS.gene23094:CDS | 50.0% | |
| AGAGGAGAATGTGAGGAAGC+GGG | + | 50602:14819-14838 | MS.gene23094:CDS | 50.0% | |
| AGCATGATTCTTCTGGTGCC+CGG | + | 50602:13148-13167 | MS.gene23094:CDS | 50.0% | |
| AGCTCCTTCACGTGCAGAAA+AGG | + | 50602:13842-13861 | MS.gene23094:intron | 50.0% | |
| AGGAGACAGAGGAGAATGTG+AGG | + | 50602:14812-14831 | MS.gene23094:CDS | 50.0% | |
| ATATGCTGCCTTCTGCTACC+AGG | - | 50602:14942-14961 | MS.gene23094:intergenic | 50.0% | |
| ATTGTGGTGCATCTTCTCCG+CGG | - | 50602:13911-13930 | MS.gene23094:intergenic | 50.0% | |
| CAGAGGAGAATGTGAGGAAG+CGG | + | 50602:14818-14837 | MS.gene23094:CDS | 50.0% | |
| GATGCACCACAATGGCAAGT+AGG | + | 50602:13918-13937 | MS.gene23094:intron | 50.0% | |
| GGTTCTATGTTGGCCACGTA+AGG | + | 50602:15524-15543 | MS.gene23094:intron | 50.0% | |
| GGTTGGAAAGGAAAGGGTCT+TGG | + | 50602:13412-13431 | MS.gene23094:CDS | 50.0% | |
| GTGTAGCCTACTTGCCATTG+TGG | - | 50602:13927-13946 | MS.gene23094:intergenic | 50.0% | |
| TGCTGCTACCTTTGGTCCAT+CGG | - | 50602:13104-13123 | MS.gene23094:intergenic | 50.0% | |
| TGGCTTTCTGACCACAACGT+GGG | + | 50602:13808-13827 | MS.gene23094:intron | 50.0% | |
| ! | CAAATCCCAAATAGGGGCAC+GGG | - | 50602:14265-14284 | MS.gene23094:intergenic | 50.0% |
| ! | GCTATGGGTGGGTTCTATGT+TGG | + | 50602:15514-15533 | MS.gene23094:intron | 50.0% |
| ! | GGGTGACTGGCCACAAAAAT+GGG | - | 50602:14245-14264 | MS.gene23094:intergenic | 50.0% |
| !! | ACTGAAACTGGTGCTGATCC+AGG | - | 50602:15674-15693 | MS.gene23094:intergenic | 50.0% |
| !! | CTCGCTTTTGCCTATCATCC+CGG | - | 50602:15393-15412 | MS.gene23094:intergenic | 50.0% |
| AACCTGCACCTGGTAGCAGA+AGG | + | 50602:14931-14950 | MS.gene23094:intron | 55.0% | |
| AGTCACCCGTGCCCCTATTT+GGG | + | 50602:14257-14276 | MS.gene23094:intron | 55.0% | |
| ATGCATGGCAGCAGTAAGCC+GGG | + | 50602:15372-15391 | MS.gene23094:CDS | 55.0% | |
| CAGCAGTAAGCCGGGATGAT+AGG | + | 50602:15380-15399 | MS.gene23094:CDS | 55.0% | |
| GCGGAGAAGATGCACCACAA+TGG | + | 50602:13910-13929 | MS.gene23094:intron | 55.0% | |
| GCTGCTGTTGCTGCTACCTT+TGG | - | 50602:13112-13131 | MS.gene23094:intergenic | 55.0% | |
| GGCTTTCTGACCACAACGTG+GGG | + | 50602:13809-13828 | MS.gene23094:intron | 55.0% | |
| GTGGCTTTCTGACCACAACG+TGG | + | 50602:13807-13826 | MS.gene23094:intron | 55.0% | |
| ! | CGGGTGACTGGCCACAAAAA+TGG | - | 50602:14246-14265 | MS.gene23094:intergenic | 55.0% |
| AGCAGGCAGAAGAAGCCACC+AGG | - | 50602:15056-15075 | MS.gene23094:intergenic | 60.0% | |
| CAGTCACCCGTGCCCCTATT+TGG | + | 50602:14256-14275 | MS.gene23094:intron | 60.0% | |
| CTGCACGTGAAGGAGCTCAC+CGG | - | 50602:13839-13858 | MS.gene23094:intergenic | 60.0% | |
| GACCACAACGTGGGGTTTGC+CGG | + | 50602:13817-13836 | MS.gene23094:intron | 60.0% | |
| GGAGAATGTGAGGAAGCGGG+AGG | + | 50602:14822-14841 | MS.gene23094:CDS | 60.0% | |
| GGTGTCTGCCGTCTTCTTCC+TGG | + | 50602:14293-14312 | MS.gene23094:intron | 60.0% | |
| TGCCTTCTGCTACCAGGTGC+AGG | - | 50602:14936-14955 | MS.gene23094:intergenic | 60.0% | |
| TGCTTGCCGACCCCTAGTCT+TGG | - | 50602:14727-14746 | MS.gene23094:intergenic | 60.0% | |
| ! | CAAATAGGGGCACGGGTGAC+TGG | - | 50602:14258-14277 | MS.gene23094:intergenic | 60.0% |
| CACCGGCAAACCCCACGTTG+TGG | - | 50602:13822-13841 | MS.gene23094:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50602 | gene | 13084 | 15759 | 13084 | ID=MS.gene23094 |
| 50602 | mRNA | 13084 | 15759 | 13084 | ID=MS.gene23094.t1;Parent=MS.gene23094 |
| 50602 | exon | 13084 | 13194 | 13084 | ID=MS.gene23094.t1.exon1;Parent=MS.gene23094.t1 |
| 50602 | CDS | 13084 | 13194 | 13084 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| 50602 | exon | 13274 | 13448 | 13274 | ID=MS.gene23094.t1.exon2;Parent=MS.gene23094.t1 |
| 50602 | CDS | 13274 | 13448 | 13274 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| 50602 | exon | 14689 | 14843 | 14689 | ID=MS.gene23094.t1.exon3;Parent=MS.gene23094.t1 |
| 50602 | CDS | 14689 | 14843 | 14689 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| 50602 | exon | 15142 | 15243 | 15142 | ID=MS.gene23094.t1.exon4;Parent=MS.gene23094.t1 |
| 50602 | CDS | 15142 | 15243 | 15142 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| 50602 | exon | 15352 | 15455 | 15352 | ID=MS.gene23094.t1.exon5;Parent=MS.gene23094.t1 |
| 50602 | CDS | 15352 | 15455 | 15352 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| 50602 | exon | 15643 | 15759 | 15643 | ID=MS.gene23094.t1.exon6;Parent=MS.gene23094.t1 |
| 50602 | CDS | 15643 | 15759 | 15643 | ID=cds.MS.gene23094.t1;Parent=MS.gene23094.t1 |
| Gene Sequence |
| Protein sequence |
