Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23303.t1 | XP_003606958.1 | 100 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 2.20E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23303.t1 | Q9SIK2 | 93.8 | 80 | 5 | 0 | 28 | 107 | 29 | 108 | 1.7e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23303.t1 | B7FH10 | 100.0 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 1.6e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene23303 | 0.852602 | 4.15E-61 | -1.69E-46 |
| MS.gene050252 | MS.gene23303 | 0.866477 | 2.77E-65 | -1.69E-46 |
| MS.gene050638 | MS.gene23303 | -0.827066 | 1.92E-54 | -1.69E-46 |
| MS.gene050791 | MS.gene23303 | 0.853656 | 2.07E-61 | -1.69E-46 |
| MS.gene050912 | MS.gene23303 | 0.848157 | 7.33E-60 | -1.69E-46 |
| MS.gene051984 | MS.gene23303 | 0.807652 | 4.55E-50 | -1.69E-46 |
| MS.gene052412 | MS.gene23303 | 0.83987 | 1.22E-57 | -1.69E-46 |
| MS.gene052666 | MS.gene23303 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene23303 | 0.853189 | 2.82E-61 | -1.69E-46 |
| MS.gene057272 | MS.gene23303 | 0.893916 | 4.02E-75 | -1.69E-46 |
| MS.gene057641 | MS.gene23303 | 0.855374 | 6.59E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene23303 | 0.918716 | 1.11E-86 | -1.69E-46 |
| MS.gene059340 | MS.gene23303 | 0.821525 | 3.86E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene23303 | 0.857928 | 1.17E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23303.t1 | MTR_4g070600 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 1.06e-74 | 216 |
| MS.gene23303.t1 | MTR_2g086610 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.56e-74 | 215 |
| MS.gene23303.t1 | MTR_4g070600 | 99.065 | 107 | 0 | 1 | 1 | 107 | 1 | 106 | 3.00e-72 | 210 |
| MS.gene23303.t1 | MTR_6g015615 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| MS.gene23303.t1 | MTR_3g117040 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23303.t1 | AT2G21580 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.71e-54 | 164 |
| MS.gene23303.t1 | AT4G39200 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.45e-52 | 160 |
| MS.gene23303.t1 | AT2G21580 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.02e-52 | 159 |
| MS.gene23303.t1 | AT4G39200 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.13e-50 | 155 |
| MS.gene23303.t1 | AT4G34555 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.02e-50 | 154 |
| MS.gene23303.t1 | AT2G16360 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.08e-46 | 145 |
Find 38 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4.3:+34538979 | MS.gene23303:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4.3:-34537738 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4.3:-34536821 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4.3:-34536784 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4.3:+34536808 | MS.gene23303:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4.3:-34536812 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4.3:-34536785 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4.3:+34539031 | MS.gene23303:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4.3:+34537762 | MS.gene23303:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4.3:+34539014 | MS.gene23303:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4.3:-34539088 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4.3:-34536817 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4.3:+34537685 | MS.gene23303:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4.3:+34537763 | MS.gene23303:CDS |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4.3:-34536809 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4.3:+34539021 | MS.gene23303:CDS |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4.3:+34537652 | MS.gene23303:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4.3:-34536799 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4.3:-34537711 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4.3:+34539035 | MS.gene23303:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4.3:+34538996 | MS.gene23303:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4.3:-34536805 | None:intergenic |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4.3:+34539070 | MS.gene23303:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4.3:+34537640 | MS.gene23303:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4.3:+34536814 | MS.gene23303:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4.3:-34537737 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4.3:-34537758 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4.3:-34536802 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4.3:+34536831 | MS.gene23303:CDS |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4.3:+34537641 | MS.gene23303:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4.3:+34537686 | MS.gene23303:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4.3:+34536811 | MS.gene23303:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4.3:+34538992 | MS.gene23303:intron |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4.3:+34539071 | MS.gene23303:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4.3:+34538995 | MS.gene23303:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4.3:+34539086 | MS.gene23303:CDS |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4.3:+34537670 | MS.gene23303:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4.3:-34537766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGATGAATTAAATTT+TGG | - | chr4.3:34538948-34538967 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | - | chr4.3:34537559-34537578 | None:intergenic | 10.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | - | chr4.3:34536975-34536994 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | - | chr4.3:34537413-34537432 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | - | chr4.3:34537463-34537482 | None:intergenic | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | - | chr4.3:34538101-34538120 | None:intergenic | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | + | chr4.3:34538909-34538928 | MS.gene23303:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | + | chr4.3:34538910-34538929 | MS.gene23303:intron | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | - | chr4.3:34536868-34536887 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | - | chr4.3:34538527-34538546 | None:intergenic | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | + | chr4.3:34538962-34538981 | MS.gene23303:intron | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | + | chr4.3:34537096-34537115 | MS.gene23303:intron | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | + | chr4.3:34538582-34538601 | MS.gene23303:intron | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | + | chr4.3:34537607-34537626 | MS.gene23303:intron | 20.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | - | chr4.3:34537113-34537132 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | - | chr4.3:34538696-34538715 | None:intergenic | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | - | chr4.3:34538633-34538652 | None:intergenic | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | + | chr4.3:34538607-34538626 | MS.gene23303:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | + | chr4.3:34538448-34538467 | MS.gene23303:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | - | chr4.3:34536998-34537017 | None:intergenic | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | + | chr4.3:34538215-34538234 | MS.gene23303:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | - | chr4.3:34538771-34538790 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | + | chr4.3:34538798-34538817 | MS.gene23303:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | + | chr4.3:34538543-34538562 | MS.gene23303:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | - | chr4.3:34537537-34537556 | None:intergenic | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | + | chr4.3:34537793-34537812 | MS.gene23303:intron | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | + | chr4.3:34537248-34537267 | MS.gene23303:intron | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | + | chr4.3:34537606-34537625 | MS.gene23303:intron | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | + | chr4.3:34538708-34538727 | MS.gene23303:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | + | chr4.3:34537633-34537652 | MS.gene23303:intron | 25.0% |
| AAACTAATTCCACCAATACT+AGG | - | chr4.3:34538007-34538026 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+CGG | - | chr4.3:34538088-34538107 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | - | chr4.3:34538130-34538149 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | - | chr4.3:34538155-34538174 | None:intergenic | 30.0% | |
| ATGAATTACAGAGATGAGTA+TGG | - | chr4.3:34536752-34536771 | None:intergenic | 30.0% | |
| GAGAAGATGAAATGTTAACT+AGG | + | chr4.3:34538447-34538466 | MS.gene23303:intron | 30.0% | |
| GTTTGGCCTAATGTATTATT+TGG | + | chr4.3:34538762-34538781 | MS.gene23303:intron | 30.0% | |
| TCTAACAAAACTTATGCAAG+TGG | + | chr4.3:34537344-34537363 | MS.gene23303:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | + | chr4.3:34538279-34538298 | MS.gene23303:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | - | chr4.3:34537806-34537825 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | + | chr4.3:34538278-34538297 | MS.gene23303:intron | 30.0% | |
| ! | ATGTTTTCACAAAGTAACTG+AGG | - | chr4.3:34538340-34538359 | None:intergenic | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | + | chr4.3:34536949-34536968 | MS.gene23303:intron | 30.0% |
| ! | TCTGGACTTGTTTATAAGTT+TGG | + | chr4.3:34538745-34538764 | MS.gene23303:intron | 30.0% |
| !! | TTTCTAGGGCAATATGTATT+TGG | + | chr4.3:34538293-34538312 | MS.gene23303:intron | 30.0% |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | + | chr4.3:34536759-34536778 | MS.gene23303:intron | 30.0% |
| AAAACGCGGATAGAACATTA+AGG | - | chr4.3:34538141-34538160 | None:intergenic | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | - | chr4.3:34537950-34537969 | None:intergenic | 35.0% | |
| AAACATCACTGTAAATGCAG+AGG | - | chr4.3:34538660-34538679 | None:intergenic | 35.0% | |
| AAAGGAGAAAGTGAACAACA+TGG | + | chr4.3:34537670-34537689 | MS.gene23303:CDS | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | - | chr4.3:34537390-34537409 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | - | chr4.3:34537955-34537974 | None:intergenic | 35.0% | |
| GCCATTTAGCACAAAAATTC+TGG | - | chr4.3:34538196-34538215 | None:intergenic | 35.0% | |
| GTATGCGTGCATTATTATGT+TGG | + | chr4.3:34537849-34537868 | MS.gene23303:intron | 35.0% | |
| TGATGGCTAAAGGTTTAATC+AGG | + | chr4.3:34539031-34539050 | MS.gene23303:CDS | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | - | chr4.3:34537714-34537733 | None:intergenic | 35.0% | |
| TTGTGGTCTATGCAGATTAA+TGG | + | chr4.3:34538979-34538998 | MS.gene23303:intron | 35.0% | |
| ! | AACTGCAATTTTCGGAAACA+GGG | - | chr4.3:34538519-34538538 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | + | chr4.3:34538992-34539011 | MS.gene23303:intron | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | + | chr4.3:34539021-34539040 | MS.gene23303:CDS | 35.0% |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | - | chr4.3:34538512-34538531 | None:intergenic | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | + | chr4.3:34538041-34538060 | MS.gene23303:intron | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | + | chr4.3:34538192-34538211 | MS.gene23303:intron | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | + | chr4.3:34536948-34536967 | MS.gene23303:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | + | chr4.3:34537508-34537527 | MS.gene23303:intron | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | - | chr4.3:34538520-34538539 | None:intergenic | 35.0% |
| ! | TAATGCCTTTTCTTATGGTG+TGG | + | chr4.3:34537798-34537817 | MS.gene23303:intron | 35.0% |
| ! | TTAATGTTCTATCCGCGTTT+TGG | + | chr4.3:34538140-34538159 | MS.gene23303:intron | 35.0% |
| ! | TTTTGGCAAAATGATTGCTC+TGG | + | chr4.3:34537487-34537506 | MS.gene23303:intron | 35.0% |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | + | chr4.3:34538727-34538746 | MS.gene23303:intron | 35.0% |
| AACTTTACCACACGGCATTA+AGG | - | chr4.3:34537455-34537474 | None:intergenic | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | + | chr4.3:34539071-34539090 | MS.gene23303:CDS | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | - | chr4.3:34537741-34537760 | None:intergenic | 40.0% | |
| CTAGGGCAATATGTATTTGG+AGG | + | chr4.3:34538296-34538315 | MS.gene23303:intron | 40.0% | |
| GGAGTGATGAGCTTGTATTT+GGG | - | chr4.3:34537740-34537759 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | - | chr4.3:34536954-34536973 | None:intergenic | 40.0% | |
| GGCTAAAGGTTTAATCAGGT+TGG | + | chr4.3:34539035-34539054 | MS.gene23303:CDS | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | + | chr4.3:34537641-34537660 | MS.gene23303:intron | 40.0% | |
| TGTTCCATCAGTCCTAGTAT+TGG | + | chr4.3:34537992-34538011 | MS.gene23303:intron | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | + | chr4.3:34537640-34537659 | MS.gene23303:intron | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | + | chr4.3:34537445-34537464 | MS.gene23303:intron | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | + | chr4.3:34538062-34538081 | MS.gene23303:intron | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | + | chr4.3:34538996-34539015 | MS.gene23303:CDS | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | + | chr4.3:34538995-34539014 | MS.gene23303:CDS | 40.0% |
| !! | AACATGGTGCTGTTTGATCA+GGG | + | chr4.3:34537686-34537705 | MS.gene23303:CDS | 40.0% |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | + | chr4.3:34538314-34538333 | MS.gene23303:intron | 40.0% |
| AAACGATCAGAGAGGACAGA+AGG | - | chr4.3:34537761-34537780 | None:intergenic | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | + | chr4.3:34539070-34539089 | MS.gene23303:CDS | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | - | chr4.3:34538657-34538676 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | + | chr4.3:34539014-34539033 | MS.gene23303:CDS | 45.0% | |
| TCCACCAATACTAGGACTGA+TGG | - | chr4.3:34537999-34538018 | None:intergenic | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | + | chr4.3:34538853-34538872 | MS.gene23303:intron | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | + | chr4.3:34537763-34537782 | MS.gene23303:CDS | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | - | chr4.3:34537769-34537788 | None:intergenic | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | - | chr4.3:34538872-34538891 | None:intergenic | 45.0% |
| ! | TCCATCAGTCCTAGTATTGG+TGG | + | chr4.3:34537995-34538014 | MS.gene23303:intron | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | + | chr4.3:34537685-34537704 | MS.gene23303:CDS | 45.0% |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | + | chr4.3:34536771-34536790 | MS.gene23303:intron | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | + | chr4.3:34537087-34537106 | MS.gene23303:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+TGG | + | chr4.3:34537470-34537489 | MS.gene23303:intron | 5.0% |
| CGGTGGCAAACAGAAGAAGA+AGG | + | chr4.3:34536831-34536850 | MS.gene23303:CDS | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | + | chr4.3:34537762-34537781 | MS.gene23303:CDS | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | + | chr4.3:34537652-34537671 | MS.gene23303:CDS | 50.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | - | chr4.3:34536824-34536843 | None:intergenic | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | + | chr4.3:34536811-34536830 | MS.gene23303:CDS | 55.0% | |
| TCCTCCAAGCCAGCCAAATC+TGG | + | chr4.3:34536808-34536827 | MS.gene23303:CDS | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | - | chr4.3:34536808-34536827 | None:intergenic | 55.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | + | chr4.3:34536814-34536833 | MS.gene23303:CDS | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | - | chr4.3:34536788-34536807 | None:intergenic | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | - | chr4.3:34536787-34536806 | None:intergenic | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | - | chr4.3:34536820-34536839 | None:intergenic | 60.0% | |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | - | chr4.3:34536815-34536834 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | - | chr4.3:34536812-34536831 | None:intergenic | 60.0% |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | - | chr4.3:34536805-34536824 | None:intergenic | 60.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | - | chr4.3:34536802-34536821 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34536696 | 34539107 | 34536696 | ID=MS.gene23303 |
| chr4.3 | mRNA | 34536696 | 34539107 | 34536696 | ID=MS.gene23303.t1;Parent=MS.gene23303 |
| chr4.3 | exon | 34536696 | 34536698 | 34536696 | ID=MS.gene23303.t1.exon1;Parent=MS.gene23303.t1 |
| chr4.3 | CDS | 34536696 | 34536698 | 34536696 | ID=cds.MS.gene23303.t1;Parent=MS.gene23303.t1 |
| chr4.3 | exon | 34536781 | 34536852 | 34536781 | ID=MS.gene23303.t1.exon2;Parent=MS.gene23303.t1 |
| chr4.3 | CDS | 34536781 | 34536852 | 34536781 | ID=cds.MS.gene23303.t1;Parent=MS.gene23303.t1 |
| chr4.3 | exon | 34537650 | 34537784 | 34537650 | ID=MS.gene23303.t1.exon3;Parent=MS.gene23303.t1 |
| chr4.3 | CDS | 34537650 | 34537784 | 34537650 | ID=cds.MS.gene23303.t1;Parent=MS.gene23303.t1 |
| chr4.3 | exon | 34538994 | 34539107 | 34538994 | ID=MS.gene23303.t1.exon4;Parent=MS.gene23303.t1 |
| chr4.3 | CDS | 34538994 | 34539107 | 34538994 | ID=cds.MS.gene23303.t1;Parent=MS.gene23303.t1 |
| Gene Sequence |
| Protein sequence |
