AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23552.t1 MTR_8g036060 99.026 308 2 1 1 307 1 308 0.0 610
MS.gene23552.t1 MTR_5g091630 54.104 268 98 4 35 300 2 246 7.90e-78 238
MS.gene23552.t1 MTR_5g011520 88.462 156 18 0 84 239 98 253 2.02e-77 239
MS.gene23552.t1 MTR_7g080980 59.615 208 74 3 95 302 66 263 2.62e-68 214
MS.gene23552.t1 MTR_3g068035 55.455 220 78 4 96 300 89 303 1.41e-67 213
MS.gene23552.t1 MTR_4g098450 52.518 278 114 3 34 307 33 296 1.57e-67 213
MS.gene23552.t1 MTR_1g079810 56.485 239 80 4 86 307 74 305 1.87e-67 213
MS.gene23552.t1 MTR_1g044155 76.623 154 35 1 83 235 122 275 4.70e-67 214
MS.gene23552.t1 MTR_1g073860 76.667 150 35 0 86 235 94 243 3.26e-66 210
MS.gene23552.t1 MTR_3g100470 40.523 306 144 9 6 306 15 287 6.31e-60 193
MS.gene23552.t1 MTR_5g080580 65.000 140 49 0 96 235 99 238 9.74e-53 176
MS.gene23552.t1 MTR_5g066020 40.000 275 132 5 38 307 6 252 3.84e-47 159
MS.gene23552.t1 MTR_5g089600 38.255 149 81 2 86 223 77 225 2.69e-30 114
MS.gene23552.t1 MTR_4g057487 32.547 212 121 5 86 275 17 228 3.07e-24 99.0
MS.gene23552.t1 MTR_5g010330 38.854 157 89 3 75 225 93 248 3.28e-24 100
MS.gene23552.t1 MTR_5g089700 33.548 155 94 1 85 230 74 228 1.31e-23 97.1
MS.gene23552.t1 MTR_4g057525 31.731 208 114 5 86 275 36 233 6.49e-23 95.5
MS.gene23552.t1 MTR_1g079780 39.496 119 71 1 108 225 104 222 4.19e-22 94.7
MS.gene23552.t1 MTR_1g032910 36.420 162 87 5 86 233 101 260 8.83e-22 93.6
MS.gene23552.t1 MTR_1g053685 32.704 159 98 2 86 235 85 243 2.11e-21 92.0
MS.gene23552.t1 MTR_1g061530 41.600 125 69 2 116 236 144 268 8.94e-21 91.7
MS.gene23552.t1 MTR_6g061670 40.517 116 66 2 113 225 130 245 4.05e-19 86.3
MS.gene23552.t1 MTR_6g061670 40.517 116 66 2 113 225 125 240 5.33e-19 85.9
MS.gene23552.t1 MTR_5g089090 35.811 148 89 1 86 227 28 175 8.35e-19 83.2
MS.gene23552.t1 MTR_8g098390 40.323 124 70 3 105 225 158 280 2.29e-18 84.7
MS.gene23552.t1 MTR_1g076710 43.966 116 61 2 113 225 134 248 4.24e-18 83.6
MS.gene23552.t1 MTR_4g098460 37.838 148 75 4 86 225 57 195 9.24e-18 82.0
MS.gene23552.t1 MTR_1g073870 42.857 154 40 5 83 235 48 154 1.47e-17 80.1
MS.gene23552.t1 MTR_7g116320 38.938 113 69 0 113 225 143 255 2.88e-17 81.6
MS.gene23552.t1 MTR_7g077120 36.301 146 87 2 86 225 127 272 4.15e-17 80.9
MS.gene23552.t1 MTR_8g036160 44.737 114 59 1 116 225 145 258 4.20e-17 81.3
MS.gene23552.t1 MTR_7g074935 46.903 113 57 1 116 225 130 242 5.50e-17 80.5
MS.gene23552.t1 MTR_7g116320 38.400 125 73 1 113 233 143 267 2.48e-16 77.8
MS.gene23552.t1 MTR_4g069110 41.053 95 56 0 86 180 34 128 2.56e-16 75.9
MS.gene23552.t1 MTR_4g098460 36.842 152 76 4 86 225 57 200 5.73e-16 77.0
MS.gene23552.t1 MTR_8g031100 32.512 203 126 3 83 274 122 324 7.45e-16 77.4
MS.gene23552.t1 MTR_8g078930 36.508 126 70 3 117 233 5 129 5.93e-15 71.6
MS.gene23552.t1 MTR_4g055813 34.091 132 85 2 112 241 18 149 1.05e-14 73.2
MS.gene23552.t1 MTR_5g011680 33.871 124 75 2 116 232 145 268 1.26e-14 73.2
MS.gene23552.t1 MTR_4g101990 50.746 67 33 0 116 182 147 213 3.98e-14 72.0
MS.gene23552.t1 MTR_5g011610 34.307 137 84 4 110 243 53 186 9.00e-14 71.2
MS.gene23552.t1 MTR_5g011620 35.780 109 68 1 117 225 119 225 1.32e-13 71.6
MS.gene23552.t1 MTR_4g055803 38.983 118 62 3 116 225 128 243 2.61e-13 70.5
MS.gene23552.t1 MTR_1g071850 34.965 143 65 3 93 235 37 151 2.98e-13 67.8
MS.gene23552.t1 MTR_4g055833 32.857 140 88 2 112 245 121 260 9.33e-13 68.2
MS.gene23552.t1 MTR_6g060670 35.455 110 69 2 116 225 180 287 7.37e-12 65.5
MS.gene23552.t1 MTR_3g116100 26.180 233 125 8 85 278 92 316 2.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23552.t1 AT2G45430 64.815 324 90 10 1 307 1 317 2.72e-91 274
MS.gene23552.t1 AT3G60870 54.870 308 95 10 1 307 1 265 7.66e-87 261
MS.gene23552.t1 AT4G22810 58.025 324 98 10 10 307 13 324 4.30e-80 246
MS.gene23552.t1 AT2G42940 58.036 224 73 3 82 304 49 252 6.52e-75 230
MS.gene23552.t1 AT4G12050 58.419 291 96 7 34 307 57 339 3.73e-74 231
MS.gene23552.t1 AT2G35270 72.078 154 43 0 86 239 78 231 2.66e-71 222
MS.gene23552.t1 AT1G76500 68.485 165 43 1 82 237 68 232 5.94e-67 211
MS.gene23552.t1 AT4G14465 68.590 156 49 0 84 239 65 220 4.02e-64 204
MS.gene23552.t1 AT4G17800 57.009 214 79 2 95 307 91 292 5.00e-64 204
MS.gene23552.t1 AT3G04570 71.519 158 37 1 86 235 80 237 2.18e-62 200
MS.gene23552.t1 AT5G49700 51.829 164 72 2 83 239 53 216 8.88e-56 182
MS.gene23552.t1 AT4G35390 73.333 150 38 1 86 233 63 212 4.06e-55 181
MS.gene23552.t1 AT1G20900 69.375 160 40 1 85 235 85 244 3.73e-52 174
MS.gene23552.t1 AT3G55560 54.425 226 78 6 12 235 36 238 4.49e-51 171
MS.gene23552.t1 AT1G14490 43.216 199 104 3 87 278 6 202 4.75e-42 144
MS.gene23552.t1 AT1G14490 43.216 199 104 3 87 278 25 221 8.03e-42 144
MS.gene23552.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23552.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23552.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23552.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23552.t1 AT1G63470 41.096 146 79 3 86 225 147 291 2.60e-23 99.0
MS.gene23552.t1 AT4G17950 37.696 191 104 4 86 263 196 384 2.17e-22 97.1
MS.gene23552.t1 AT5G51590 42.478 113 62 1 116 225 181 293 4.93e-22 95.9
MS.gene23552.t1 AT5G62260 39.516 124 72 1 113 233 160 283 7.84e-22 93.6
MS.gene23552.t1 AT4G12080 42.478 113 62 1 116 225 173 285 1.11e-21 94.0
MS.gene23552.t1 AT4G25320 42.478 113 62 1 116 225 169 281 1.23e-21 94.7
MS.gene23552.t1 AT5G62260 42.241 116 64 1 113 225 160 275 1.36e-21 94.4
MS.gene23552.t1 AT5G62260 42.241 116 64 1 113 225 160 275 1.36e-21 94.4
MS.gene23552.t1 AT3G04590 37.273 110 69 0 116 225 174 283 7.42e-21 92.4
MS.gene23552.t1 AT3G04590 37.273 110 69 0 116 225 174 283 1.43e-20 90.5
MS.gene23552.t1 AT2G45850 37.427 171 89 5 86 244 132 296 1.69e-20 90.5
MS.gene23552.t1 AT2G45850 37.427 171 89 5 86 244 132 296 1.69e-20 90.5
MS.gene23552.t1 AT2G45850 38.158 152 76 5 86 225 132 277 6.25e-19 85.1
MS.gene23552.t1 AT4G00200 45.133 113 59 1 116 225 126 238 2.40e-16 78.6
MS.gene23552.t1 AT4G00200 45.133 113 59 1 116 225 126 238 2.40e-16 78.6
MS.gene23552.t1 AT3G61310 31.111 225 129 5 86 304 134 338 1.26e-15 76.6
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 130 274 1.60e-15 76.6
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 130 274 1.60e-15 76.6
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23552.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23552.t1 AT5G46640 44.792 96 51 1 86 181 155 248 9.52e-15 74.3
MS.gene23552.t1 AT4G22770 39.823 113 65 1 116 225 153 265 3.53e-14 72.4
MS.gene23552.t1 AT4G22770 39.823 113 65 1 116 225 153 265 3.53e-14 72.4

Find 116 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATGAATTGAGAAGATTT+TGG 0.203201 8.4:-61480928 None:intergenic
AATTACCAGCTGAGGGTTAT+TGG 0.236815 8.4:+61480951 MS.gene23552:CDS
CTACAAGTTGTTGCTGTTGC+TGG 0.255008 8.4:-61480868 None:intergenic
ATTACCAGCTGAGGGTTATT+GGG 0.283232 8.4:+61480952 MS.gene23552:CDS
AATAACCCTCAGCTGGTAAT+TGG 0.299906 8.4:-61480949 None:intergenic
GTGCCAGGAAATGGAGGGTT+AGG 0.321400 8.4:+61480806 MS.gene23552:CDS
GACCCTAACCCTCCATTTCC+TGG 0.349826 8.4:-61480809 None:intergenic
CCATTTCCTGGCACATTCAC+TGG 0.353925 8.4:-61480797 None:intergenic
GTGGGACCGTTGTTGGCTTC+CGG 0.360811 8.4:+61480701 MS.gene23552:CDS
GAGCGTGGTGGGACCGTTGT+TGG 0.376140 8.4:+61480694 MS.gene23552:CDS
TGTTGACTTCCCATGGTTCC+CGG 0.379448 8.4:-61480833 None:intergenic
CCAGTGAATGTGCCAGGAAA+TGG 0.383912 8.4:+61480797 MS.gene23552:CDS
TTCGAGATACTATCCTTATC+TGG 0.384098 8.4:+61480587 MS.gene23552:CDS
GTTGTTCCTCTTCGTTGGTT+TGG 0.386217 8.4:-61480169 None:intergenic
AAATGGAGGGTTAGGGTCAC+CGG 0.387872 8.4:+61480814 MS.gene23552:CDS
TTCCGGACCGGTTGTTATCA+TGG 0.389245 8.4:+61480718 MS.gene23552:CDS
CTGGTGGAGCAGGCGGCGGC+AGG 0.390554 8.4:-61480616 None:intergenic
GTTATCATGGCAGCTTCCTT+TGG 0.391274 8.4:+61480731 MS.gene23552:CDS
GAACCTGCTGGTCTTCCTCT+TGG 0.392781 8.4:-61480338 None:intergenic
GTCTGCATCCTTAGCGGAAG+TGG 0.397268 8.4:+61480497 MS.gene23552:CDS
CTATCCCTCGTGATGATGAT+AGG 0.408236 8.4:-61480380 None:intergenic
CTGCTGTTGTTGACTTCCCA+TGG 0.408503 8.4:-61480840 None:intergenic
GGTGGTTGGTGTGAAATTGA+TGG 0.411727 8.4:-61480148 None:intergenic
CCTGCTCCACCAGCGGCGTC+AGG 0.417474 8.4:+61480626 MS.gene23552:CDS
CTCTTCGTTGGTTTGGTGGT+TGG 0.418891 8.4:-61480162 None:intergenic
TGGAAAAGTGATGTAGCATT+AGG 0.427339 8.4:-61480896 None:intergenic
CCTGACGCCGCTGGTGGAGC+AGG 0.427453 8.4:-61480626 None:intergenic
TTGTCCACCAGCTAGATATA+TGG 0.434432 8.4:-61480654 None:intergenic
GGAGGAAGTGGTGGTGAGAT+GGG 0.435031 8.4:+61480308 MS.gene23552:CDS
GGTGTTTCTTCATCTTCTAA+AGG 0.435106 8.4:-61480776 None:intergenic
ACCGTTGTTGGCTTCCGGAC+CGG 0.435941 8.4:+61480706 MS.gene23552:CDS
GGAAAAGACGACGGCGGAAG+CGG 0.436871 8.4:+61480275 MS.gene23552:CDS
GCCGCTGGTGGAGCAGGCGG+CGG 0.437684 8.4:-61480620 None:intergenic
CTCCGTCAACCAGCATCGCC+TGG 0.453764 8.4:+61480539 MS.gene23552:CDS
TGGAGGAAGTGGTGGTGAGA+TGG 0.454468 8.4:+61480307 MS.gene23552:CDS
ACTTTGTTGTTCCTCTTCGT+TGG 0.455028 8.4:-61480174 None:intergenic
TGAAGGTCTCTAGTGAGAAA+TGG 0.456542 8.4:-61480113 None:intergenic
GTGATGATGATAGGTGGCTT+TGG 0.489167 8.4:-61480371 None:intergenic
GTCGTCGGTGGGAGCGTGGT+GGG 0.489586 8.4:+61480683 MS.gene23552:CDS
GACGGCGGAAGCGGAAGTGC+TGG 0.489879 8.4:+61480284 MS.gene23552:CDS
GTGAGAAATGGAGGTGGAAG+AGG 0.493012 8.4:-61480101 None:intergenic
AACACTCCCACCGGAGGAGA+AGG 0.494922 8.4:+61480254 MS.gene23552:CDS
GTTCCTCTTCGTTGGTTTGG+TGG 0.510018 8.4:-61480166 None:intergenic
TGCCATGATAACAACCGGTC+CGG 0.511741 8.4:-61480720 None:intergenic
GAAGCTGCCATGATAACAAC+CGG 0.512466 8.4:-61480725 None:intergenic
GTTAGGGTCACCGGGAACCA+TGG 0.515128 8.4:+61480823 MS.gene23552:CDS
CAACTTCCATCACGTGGGAT+CGG 0.516425 8.4:-61480415 None:intergenic
GGAAGTGCTGGTGGAGGAAG+TGG 0.516540 8.4:+61480296 MS.gene23552:CDS
CGTGGTGTCTGCATCCTTAG+CGG 0.517651 8.4:+61480491 MS.gene23552:CDS
CACCAGGCGATGCTGGTTGA+CGG 0.520951 8.4:-61480541 None:intergenic
ACTACCGCACCAGGCGATGC+TGG 0.521135 8.4:-61480548 None:intergenic
AGACCAAGAGGAAGACCAGC+AGG 0.525862 8.4:+61480335 MS.gene23552:CDS
ACAGGTCGTCGGTGGGAGCG+TGG 0.529478 8.4:+61480679 MS.gene23552:CDS
TTGGAAATGCTGCTTATGAA+AGG 0.529919 8.4:+61480750 MS.gene23552:CDS
GACGGCAACAACACTCCCAC+CGG 0.530783 8.4:+61480245 MS.gene23552:CDS
TTAGGGTCACCGGGAACCAT+GGG 0.531803 8.4:+61480824 MS.gene23552:CDS
GAAACACCAGTGAATGTGCC+AGG 0.532629 8.4:+61480791 MS.gene23552:CDS
CACGTGATGGAAGTTGCAAA+TGG 0.532739 8.4:+61480422 MS.gene23552:CDS
TTCATGCCAATTACCAGCTG+AGG 0.532750 8.4:+61480943 MS.gene23552:CDS
TCTAGCTGGTGGACAAGGAC+AGG 0.533824 8.4:+61480661 MS.gene23552:CDS
TGACGGTCCCACTTCCGCTA+AGG 0.536192 8.4:-61480505 None:intergenic
GCTAATCCTGACGCCGCTGG+TGG 0.537711 8.4:-61480632 None:intergenic
GGTGCGGTAGTCACACTTCA+CGG 0.538196 8.4:+61480560 MS.gene23552:CDS
GGACAAGGACAGGTCGTCGG+TGG 0.538200 8.4:+61480671 MS.gene23552:CDS
CCACCCCAATAACCCTCAGC+TGG 0.544497 8.4:-61480956 None:intergenic
TGCCAGGAAATGGAGGGTTA+GGG 0.548211 8.4:+61480807 MS.gene23552:CDS
CGGCAGGAAAGAGCCAGATA+AGG 0.551698 8.4:-61480600 None:intergenic
ATATATCTAGCTGGTGGACA+AGG 0.552899 8.4:+61480656 MS.gene23552:CDS
TGAAGTGTGACTACCGCACC+AGG 0.554425 8.4:-61480557 None:intergenic
GGCGGAAGCGGAAGTGCTGG+TGG 0.557920 8.4:+61480287 MS.gene23552:CDS
TGCAAATGGATGTGACATCA+TGG 0.561346 8.4:+61480436 MS.gene23552:CDS
GGATTAGCCATATATCTAGC+TGG 0.562049 8.4:+61480647 MS.gene23552:CDS
GGTCGTCGGTGGGAGCGTGG+TGG 0.562103 8.4:+61480682 MS.gene23552:CDS
GTGAATGTGCCAGGAAATGG+AGG 0.571584 8.4:+61480800 MS.gene23552:CDS
CCAGCTGAGGGTTATTGGGG+TGG 0.572923 8.4:+61480956 MS.gene23552:CDS
CGAGAACGAAACAACGAAGA+CGG 0.574284 8.4:+61480227 MS.gene23552:CDS
TTACCAGCTGAGGGTTATTG+GGG 0.574478 8.4:+61480953 MS.gene23552:CDS
CATTTGCAACTTCCATCACG+TGG 0.576032 8.4:-61480421 None:intergenic
CAACCACCAAACCAACGAAG+AGG 0.578019 8.4:+61480163 MS.gene23552:CDS
GACGCCGCTGGTGGAGCAGG+CGG 0.578168 8.4:-61480623 None:intergenic
ATGGCTAATCCTGACGCCGC+TGG 0.580569 8.4:-61480635 None:intergenic
CGCACTCCGATCCCACGTGA+TGG 0.581464 8.4:+61480409 MS.gene23552:CDS
TGACGGTCTTTGCGCGAAGG+AGG 0.585381 8.4:+61480465 MS.gene23552:CDS
TCAACCAGCATCGCCTGGTG+CGG 0.586124 8.4:+61480544 MS.gene23552:CDS
AATGGAGGGTTAGGGTCACC+GGG 0.588273 8.4:+61480815 MS.gene23552:CDS
GACAAGGACAGGTCGTCGGT+GGG 0.588517 8.4:+61480672 MS.gene23552:CDS
GTGTGACGGTCTTTGCGCGA+AGG 0.589217 8.4:+61480462 MS.gene23552:CDS
GGAAGCGGAAGTGCTGGTGG+AGG 0.590408 8.4:+61480290 MS.gene23552:CDS
GAGGAACAACAAAGTGGCAA+TGG 0.592421 8.4:+61480182 MS.gene23552:CDS
GCCGCCGCCTGCTCCACCAG+CGG 0.593837 8.4:+61480619 MS.gene23552:CDS
TTCATAAGCAGCATTTCCAA+AGG 0.598798 8.4:-61480747 None:intergenic
TCATGCCAATTACCAGCTGA+GGG 0.610376 8.4:+61480944 MS.gene23552:CDS
GGCAACAACACTCCCACCGG+AGG 0.610978 8.4:+61480248 MS.gene23552:CDS
TCTGCATCCTTAGCGGAAGT+GGG 0.612016 8.4:+61480498 MS.gene23552:CDS
ACGGAGAGTCACGTTTGTGA+CGG 0.630141 8.4:-61480522 None:intergenic
GGTGGACAAGGACAGGTCGT+CGG 0.631663 8.4:+61480668 MS.gene23552:CDS
GGCAATGGTAACTTAAGCCG+AGG 0.631690 8.4:+61480197 MS.gene23552:CDS
GAGATGGGAAGAAGACCAAG+AGG 0.634395 8.4:+61480323 MS.gene23552:CDS
TCTCTAGTGAGAAATGGAGG+TGG 0.634778 8.4:-61480107 None:intergenic
TTAGCCATATATCTAGCTGG+TGG 0.635384 8.4:+61480650 MS.gene23552:CDS
GATGGTGAGGATGAAGATGA+AGG 0.638930 8.4:-61480130 None:intergenic
AGTGCTGGTGGAGGAAGTGG+TGG 0.643608 8.4:+61480299 MS.gene23552:CDS
TTGGTGTGAAATTGATGGTG+AGG 0.647165 8.4:-61480143 None:intergenic
AACGAAGAGGAACAACAAAG+TGG 0.649911 8.4:+61480176 MS.gene23552:CDS
TCCCTCGTGATGATGATAGG+TGG 0.658947 8.4:-61480377 None:intergenic
GGAGGAGAAGGAAAAGACGA+CGG 0.659945 8.4:+61480266 MS.gene23552:CDS
ACCGGTCCGGAAGCCAACAA+CGG 0.661651 8.4:-61480707 None:intergenic
AGGTCTCTAGTGAGAAATGG+AGG 0.664192 8.4:-61480110 None:intergenic
ATTTGCAACTTCCATCACGT+GGG 0.680861 8.4:-61480420 None:intergenic
ATCATGGATCAAGTAGCACA+AGG 0.681581 8.4:+61480074 None:intergenic
AGCCACCTATCATCATCACG+AGG 0.683774 8.4:+61480375 MS.gene23552:CDS
GGAGAAGGAAAAGACGACGG+CGG 0.687123 8.4:+61480269 MS.gene23552:CDS
GCCACCTATCATCATCACGA+GGG 0.702399 8.4:+61480376 MS.gene23552:CDS
TTTGCGCGAAGGAGGCAGCG+TGG 0.709250 8.4:+61480473 MS.gene23552:CDS
TGAATGTGCCAGGAAATGGA+GGG 0.719115 8.4:+61480801 MS.gene23552:CDS
TGACATCATGGAAAGTGTGA+CGG 0.725106 8.4:+61480448 MS.gene23552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CATGAATTGAGAAGATTTTG+GGG - chr8.4:61480929-61480948 None:intergenic 30.0%
! GCATGAATTGAGAAGATTTT+GGG - chr8.4:61480930-61480949 None:intergenic 30.0%
GGTGTTTCTTCATCTTCTAA+AGG - chr8.4:61480779-61480798 None:intergenic 35.0%
TGGAAAAGTGATGTAGCATT+AGG - chr8.4:61480899-61480918 None:intergenic 35.0%
TTCATAAGCAGCATTTCCAA+AGG - chr8.4:61480750-61480769 None:intergenic 35.0%
TTCGAGATACTATCCTTATC+TGG + chr8.4:61480587-61480606 MS.gene23552:CDS 35.0%
! GGCATGAATTGAGAAGATTT+TGG - chr8.4:61480931-61480950 None:intergenic 35.0%
! TTGGAAATGCTGCTTATGAA+AGG + chr8.4:61480750-61480769 MS.gene23552:CDS 35.0%
!! AATGCTACATCACTTTTCCA+TGG + chr8.4:61480899-61480918 MS.gene23552:CDS 35.0%
AACGAAGAGGAACAACAAAG+TGG + chr8.4:61480176-61480195 MS.gene23552:CDS 40.0%
AATAACCCTCAGCTGGTAAT+TGG - chr8.4:61480952-61480971 None:intergenic 40.0%
AATTACCAGCTGAGGGTTAT+TGG + chr8.4:61480951-61480970 MS.gene23552:CDS 40.0%
ATTACCAGCTGAGGGTTATT+GGG + chr8.4:61480952-61480971 MS.gene23552:CDS 40.0%
ATTTGCAACTTCCATCACGT+GGG - chr8.4:61480423-61480442 None:intergenic 40.0%
TGAAGGTCTCTAGTGAGAAA+TGG - chr8.4:61480116-61480135 None:intergenic 40.0%
TGCAAATGGATGTGACATCA+TGG + chr8.4:61480436-61480455 MS.gene23552:CDS 40.0%
TTAGCCATATATCTAGCTGG+TGG + chr8.4:61480650-61480669 MS.gene23552:CDS 40.0%
TTGTCCACCAGCTAGATATA+TGG - chr8.4:61480657-61480676 None:intergenic 40.0%
! ATATATCTAGCTGGTGGACA+AGG + chr8.4:61480656-61480675 MS.gene23552:CDS 40.0%
! TGACATCATGGAAAGTGTGA+CGG + chr8.4:61480448-61480467 MS.gene23552:CDS 40.0%
!! ACTTTGTTGTTCCTCTTCGT+TGG - chr8.4:61480177-61480196 None:intergenic 40.0%
!! CGTTGTTTCGTTCTCGTTTT+TGG - chr8.4:61480223-61480242 None:intergenic 40.0%
!! GGATTAGCCATATATCTAGC+TGG + chr8.4:61480647-61480666 MS.gene23552:CDS 40.0%
!! TTGGTGTGAAATTGATGGTG+AGG - chr8.4:61480146-61480165 None:intergenic 40.0%
AGGTCTCTAGTGAGAAATGG+AGG - chr8.4:61480113-61480132 None:intergenic 45.0%
CATTTGCAACTTCCATCACG+TGG - chr8.4:61480424-61480443 None:intergenic 45.0%
CGAGAACGAAACAACGAAGA+CGG + chr8.4:61480227-61480246 MS.gene23552:CDS 45.0%
GAAGCTGCCATGATAACAAC+CGG - chr8.4:61480728-61480747 None:intergenic 45.0%
GAGGAACAACAAAGTGGCAA+TGG + chr8.4:61480182-61480201 MS.gene23552:CDS 45.0%
GATGGTGAGGATGAAGATGA+AGG - chr8.4:61480133-61480152 None:intergenic 45.0%
GTTATCATGGCAGCTTCCTT+TGG + chr8.4:61480731-61480750 MS.gene23552:CDS 45.0%
TCATGCCAATTACCAGCTGA+GGG + chr8.4:61480944-61480963 MS.gene23552:CDS 45.0%
TCTCTAGTGAGAAATGGAGG+TGG - chr8.4:61480110-61480129 None:intergenic 45.0%
TGAATGTGCCAGGAAATGGA+GGG + chr8.4:61480801-61480820 MS.gene23552:CDS 45.0%
TTACCAGCTGAGGGTTATTG+GGG + chr8.4:61480953-61480972 MS.gene23552:CDS 45.0%
TTCATGCCAATTACCAGCTG+AGG + chr8.4:61480943-61480962 MS.gene23552:CDS 45.0%
! CACGTGATGGAAGTTGCAAA+TGG + chr8.4:61480422-61480441 MS.gene23552:CDS 45.0%
! CTACAAGTTGTTGCTGTTGC+TGG - chr8.4:61480871-61480890 None:intergenic 45.0%
! CTATCCCTCGTGATGATGAT+AGG - chr8.4:61480383-61480402 None:intergenic 45.0%
! GGTGGTTGGTGTGAAATTGA+TGG - chr8.4:61480151-61480170 None:intergenic 45.0%
! GTGATGATGATAGGTGGCTT+TGG - chr8.4:61480374-61480393 None:intergenic 45.0%
! GTTGTTCCTCTTCGTTGGTT+TGG - chr8.4:61480172-61480191 None:intergenic 45.0%
!! GAAGATTTTGGGGAACTCCA+TGG - chr8.4:61480919-61480938 None:intergenic 45.0%
!! GGTTTGTTTTTCGAACCTGC+TGG - chr8.4:61480353-61480372 None:intergenic 45.0%
!!! TTCGTTCTCGTTTTTGGCCT+CGG - chr8.4:61480217-61480236 None:intergenic 45.0%
AAATGGAGGGTTAGGGTCAC+CGG + chr8.4:61480814-61480833 MS.gene23552:CDS 50.0%
ACGGAGAGTCACGTTTGTGA+CGG - chr8.4:61480525-61480544 None:intergenic 50.0%
AGCCACCTATCATCATCACG+AGG + chr8.4:61480375-61480394 MS.gene23552:CDS 50.0%
CAACCACCAAACCAACGAAG+AGG + chr8.4:61480163-61480182 MS.gene23552:CDS 50.0%
CAACTTCCATCACGTGGGAT+CGG - chr8.4:61480418-61480437 None:intergenic 50.0%
CCAGTGAATGTGCCAGGAAA+TGG + chr8.4:61480797-61480816 MS.gene23552:CDS 50.0%
CCATTTCCTGGCACATTCAC+TGG - chr8.4:61480800-61480819 None:intergenic 50.0%
GAAACACCAGTGAATGTGCC+AGG + chr8.4:61480791-61480810 MS.gene23552:CDS 50.0%
GAGATGGGAAGAAGACCAAG+AGG + chr8.4:61480323-61480342 MS.gene23552:CDS 50.0%
GCCACCTATCATCATCACGA+GGG + chr8.4:61480376-61480395 MS.gene23552:CDS 50.0%
GGAGGAGAAGGAAAAGACGA+CGG + chr8.4:61480266-61480285 MS.gene23552:CDS 50.0%
GGCAATGGTAACTTAAGCCG+AGG + chr8.4:61480197-61480216 MS.gene23552:CDS 50.0%
GTGAATGTGCCAGGAAATGG+AGG + chr8.4:61480800-61480819 MS.gene23552:CDS 50.0%
GTGAGAAATGGAGGTGGAAG+AGG - chr8.4:61480104-61480123 None:intergenic 50.0%
TCTGCATCCTTAGCGGAAGT+GGG + chr8.4:61480498-61480517 MS.gene23552:CDS 50.0%
TGCCAGGAAATGGAGGGTTA+GGG + chr8.4:61480807-61480826 MS.gene23552:CDS 50.0%
TGCCATGATAACAACCGGTC+CGG - chr8.4:61480723-61480742 None:intergenic 50.0%
TTCCGGACCGGTTGTTATCA+TGG + chr8.4:61480718-61480737 MS.gene23552:CDS 50.0%
! GTCGTCTTTTCCTTCTCCTC+CGG - chr8.4:61480267-61480286 None:intergenic 50.0%
! TCCCTCGTGATGATGATAGG+TGG - chr8.4:61480380-61480399 None:intergenic 50.0%
! TCTTTTCCTTCTCCTCCGGT+GGG - chr8.4:61480263-61480282 None:intergenic 50.0%
!! CTCTTCGTTGGTTTGGTGGT+TGG - chr8.4:61480165-61480184 None:intergenic 50.0%
!! CTGCTGTTGTTGACTTCCCA+TGG - chr8.4:61480843-61480862 None:intergenic 50.0%
!! GTTCCTCTTCGTTGGTTTGG+TGG - chr8.4:61480169-61480188 None:intergenic 50.0%
!! TGTTGACTTCCCATGGTTCC+CGG - chr8.4:61480836-61480855 None:intergenic 50.0%
AATGGAGGGTTAGGGTCACC+GGG + chr8.4:61480815-61480834 MS.gene23552:CDS 55.0%
AGACCAAGAGGAAGACCAGC+AGG + chr8.4:61480335-61480354 MS.gene23552:CDS 55.0%
CGGCAGGAAAGAGCCAGATA+AGG - chr8.4:61480603-61480622 None:intergenic 55.0%
CGTGGTGTCTGCATCCTTAG+CGG + chr8.4:61480491-61480510 MS.gene23552:CDS 55.0%
GACCCTAACCCTCCATTTCC+TGG - chr8.4:61480812-61480831 None:intergenic 55.0%
GGAGAAGGAAAAGACGACGG+CGG + chr8.4:61480269-61480288 MS.gene23552:CDS 55.0%
GGTGCGGTAGTCACACTTCA+CGG + chr8.4:61480560-61480579 MS.gene23552:CDS 55.0%
GTCTGCATCCTTAGCGGAAG+TGG + chr8.4:61480497-61480516 MS.gene23552:CDS 55.0%
GTGCCAGGAAATGGAGGGTT+AGG + chr8.4:61480806-61480825 MS.gene23552:CDS 55.0%
TGAAGTGTGACTACCGCACC+AGG - chr8.4:61480560-61480579 None:intergenic 55.0%
TTAGGGTCACCGGGAACCAT+GGG + chr8.4:61480824-61480843 MS.gene23552:CDS 55.0%
! GGAGGAAGTGGTGGTGAGAT+GGG + chr8.4:61480308-61480327 MS.gene23552:CDS 55.0%
! GTCTTTTCCTTCTCCTCCGG+TGG - chr8.4:61480264-61480283 None:intergenic 55.0%
! TCTAGCTGGTGGACAAGGAC+AGG + chr8.4:61480661-61480680 MS.gene23552:CDS 55.0%
! TGGAGGAAGTGGTGGTGAGA+TGG + chr8.4:61480307-61480326 MS.gene23552:CDS 55.0%
!! GAACCTGCTGGTCTTCCTCT+TGG - chr8.4:61480341-61480360 None:intergenic 55.0%
AACACTCCCACCGGAGGAGA+AGG + chr8.4:61480254-61480273 MS.gene23552:CDS 60.0%
ACCGGTCCGGAAGCCAACAA+CGG - chr8.4:61480710-61480729 None:intergenic 60.0%
ATGGCTAATCCTGACGCCGC+TGG - chr8.4:61480638-61480657 None:intergenic 60.0%
CCACCCCAATAACCCTCAGC+TGG - chr8.4:61480959-61480978 None:intergenic 60.0%
CCAGCTGAGGGTTATTGGGG+TGG + chr8.4:61480956-61480975 MS.gene23552:CDS 60.0%
GACAAGGACAGGTCGTCGGT+GGG + chr8.4:61480672-61480691 MS.gene23552:CDS 60.0%
GACGGCAACAACACTCCCAC+CGG + chr8.4:61480245-61480264 MS.gene23552:CDS 60.0%
GGAAAAGACGACGGCGGAAG+CGG + chr8.4:61480275-61480294 MS.gene23552:CDS 60.0%
GGTGGACAAGGACAGGTCGT+CGG + chr8.4:61480668-61480687 MS.gene23552:CDS 60.0%
GTGTGACGGTCTTTGCGCGA+AGG + chr8.4:61480462-61480481 MS.gene23552:CDS 60.0%
GTTAGGGTCACCGGGAACCA+TGG + chr8.4:61480823-61480842 MS.gene23552:CDS 60.0%
TCAACCAGCATCGCCTGGTG+CGG + chr8.4:61480544-61480563 MS.gene23552:CDS 60.0%
TGACGGTCCCACTTCCGCTA+AGG - chr8.4:61480508-61480527 None:intergenic 60.0%
TGACGGTCTTTGCGCGAAGG+AGG + chr8.4:61480465-61480484 MS.gene23552:CDS 60.0%
! CACCAGGCGATGCTGGTTGA+CGG - chr8.4:61480544-61480563 None:intergenic 60.0%
!! ACCGTTGTTGGCTTCCGGAC+CGG + chr8.4:61480706-61480725 MS.gene23552:CDS 60.0%
!! AGTGCTGGTGGAGGAAGTGG+TGG + chr8.4:61480299-61480318 MS.gene23552:CDS 60.0%
!! GGAAGTGCTGGTGGAGGAAG+TGG + chr8.4:61480296-61480315 MS.gene23552:CDS 60.0%
!! GTGGGACCGTTGTTGGCTTC+CGG + chr8.4:61480701-61480720 MS.gene23552:CDS 60.0%
ACTACCGCACCAGGCGATGC+TGG - chr8.4:61480551-61480570 None:intergenic 65.0%
CGCACTCCGATCCCACGTGA+TGG + chr8.4:61480409-61480428 MS.gene23552:CDS 65.0%
CTCCGTCAACCAGCATCGCC+TGG + chr8.4:61480539-61480558 MS.gene23552:CDS 65.0%
GCTAATCCTGACGCCGCTGG+TGG - chr8.4:61480635-61480654 None:intergenic 65.0%
GGACAAGGACAGGTCGTCGG+TGG + chr8.4:61480671-61480690 MS.gene23552:CDS 65.0%
GGCAACAACACTCCCACCGG+AGG + chr8.4:61480248-61480267 MS.gene23552:CDS 65.0%
TTTGCGCGAAGGAGGCAGCG+TGG + chr8.4:61480473-61480492 MS.gene23552:CDS 65.0%
! GAGCGTGGTGGGACCGTTGT+TGG + chr8.4:61480694-61480713 MS.gene23552:CDS 65.0%
!! GGAAGCGGAAGTGCTGGTGG+AGG + chr8.4:61480290-61480309 MS.gene23552:CDS 65.0%
ACAGGTCGTCGGTGGGAGCG+TGG + chr8.4:61480679-61480698 MS.gene23552:CDS 70.0%
! GACGGCGGAAGCGGAAGTGC+TGG + chr8.4:61480284-61480303 MS.gene23552:CDS 70.0%
! GTCGTCGGTGGGAGCGTGGT+GGG + chr8.4:61480683-61480702 MS.gene23552:CDS 70.0%
!! GGCGGAAGCGGAAGTGCTGG+TGG + chr8.4:61480287-61480306 MS.gene23552:CDS 70.0%
CCTGACGCCGCTGGTGGAGC+AGG - chr8.4:61480629-61480648 None:intergenic 75.0%
CCTGCTCCACCAGCGGCGTC+AGG + chr8.4:61480626-61480645 MS.gene23552:CDS 75.0%
GACGCCGCTGGTGGAGCAGG+CGG - chr8.4:61480626-61480645 None:intergenic 75.0%
! GGTCGTCGGTGGGAGCGTGG+TGG + chr8.4:61480682-61480701 MS.gene23552:CDS 75.0%
! CTGGTGGAGCAGGCGGCGGC+AGG - chr8.4:61480619-61480638 None:intergenic 80.0%
! GCCGCCGCCTGCTCCACCAG+CGG + chr8.4:61480619-61480638 MS.gene23552:CDS 80.0%
! GCCGCTGGTGGAGCAGGCGG+CGG - chr8.4:61480623-61480642 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 61480077 61481000 61480077 ID=MS.gene23552
chr8.4 mRNA 61480077 61481000 61480077 ID=MS.gene23552.t1;Parent=MS.gene23552
chr8.4 exon 61480077 61481000 61480077 ID=MS.gene23552.t1.exon1;Parent=MS.gene23552.t1
chr8.4 CDS 61480077 61481000 61480077 ID=cds.MS.gene23552.t1;Parent=MS.gene23552.t1
Gene Sequence

>MS.gene23552

ATGGATCAAGTAGCACAAGGTCGTCCTCTTCCACCTCCATTTCTCACTAGAGACCTTCATCTTCATCCTCACCATCAATTTCACACCAACCACCAAACCAACGAAGAGGAACAACAAAGTGGCAATGGTAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACGAAGACGGCAACAACACTCCCACCGGAGGAGAAGGAAAAGACGACGGCGGAAGCGGAAGTGCTGGTGGAGGAAGTGGTGGTGAGATGGGAAGAAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCAAAGCCACCTATCATCATCACGAGGGATAGCGCGAACGCACTCCGATCCCACGTGATGGAAGTTGCAAATGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCGCGAAGGAGGCAGCGTGGTGTCTGCATCCTTAGCGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCGCCTGGTGCGGTAGTCACACTTCACGGAAGATTCGAGATACTATCCTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGTGGACAAGGACAGGTCGTCGGTGGGAGCGTGGTGGGACCGTTGTTGGCTTCCGGACCGGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCTTATGAAAGGTTACCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAATGGAGGGTTAGGGTCACCGGGAACCATGGGAAGTCAACAACAGCAGCAGAACCAGCAACAGCAACAACTTGTAGCAGATCCTAATGCTACATCACTTTTCCATGGAGTTCCCCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGTTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA
Protein sequence

>MS.gene23552.t1

MDQVAQGRPLPPPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNEDGNNTPTGGEGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGNGGLGSPGTMGSQQQQQNQQQQQLVADPNATSLFHGVPQNLLNSCQLPAEGYWGGSARPPF