AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23624

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23624.t1 MTR_8g033400 90.823 316 29 0 1 316 1 316 0.0 593
MS.gene23624.t1 MTR_8g033410 75.962 312 66 2 1 311 1 304 9.44e-174 484
MS.gene23624.t1 MTR_8g033390 59.060 298 120 2 16 311 4 301 9.78e-125 360
MS.gene23624.t1 MTR_7g075830 53.214 280 109 5 51 312 19 294 1.35e-90 273
MS.gene23624.t1 MTR_4g012960 41.429 280 157 2 32 311 16 288 3.32e-77 239
MS.gene23624.t1 MTR_4g013090 41.343 283 156 3 32 311 16 291 1.47e-76 237
MS.gene23624.t1 MTR_4g013100 40.636 283 158 3 32 311 17 292 5.87e-76 236
MS.gene23624.t1 MTR_2g101840 44.043 277 150 3 32 307 16 288 3.67e-72 226
MS.gene23624.t1 MTR_4g013135 41.818 275 150 3 40 311 24 291 3.07e-62 201
MS.gene23624.t1 MTR_3g005970 27.907 258 158 7 76 311 107 358 1.90e-24 102
MS.gene23624.t1 MTR_1g112510 27.049 244 155 4 94 315 94 336 6.06e-20 89.7
MS.gene23624.t1 MTR_4g005880 27.273 253 171 7 63 307 127 374 1.76e-16 80.5
MS.gene23624.t1 MTR_1g107480 26.754 228 155 5 87 307 119 341 8.31e-16 78.6
MS.gene23624.t1 MTR_6g007170 25.714 245 162 6 76 307 111 348 1.25e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23624.t1 AT1G12550 54.098 305 134 3 13 315 3 303 8.61e-107 315
MS.gene23624.t1 AT2G45630 50.943 318 143 5 4 311 2 316 2.70e-105 311
MS.gene23624.t1 AT1G79870 44.882 254 133 2 61 311 42 291 4.58e-73 228
MS.gene23624.t1 AT1G79870 42.231 251 125 2 61 311 42 272 8.07e-64 204
MS.gene23624.t1 AT2G45630 42.697 178 87 5 4 169 2 176 1.42e-35 127
MS.gene23624.t1 AT1G72190 25.926 324 202 9 12 314 46 352 1.28e-27 111
MS.gene23624.t1 AT5G28310 35.465 172 58 4 142 311 91 211 6.60e-22 92.8
MS.gene23624.t1 AT1G68010 27.459 244 154 4 94 315 94 336 6.77e-19 87.0
MS.gene23624.t1 AT1G68010 28.696 230 141 4 94 301 94 322 1.86e-18 85.5
MS.gene23624.t1 AT5G14780 27.753 227 148 5 92 307 111 332 7.19e-18 84.0
MS.gene23624.t1 AT5G14780 27.753 227 148 5 92 307 99 320 8.38e-18 83.6
MS.gene23624.t1 AT5G14780 27.511 229 150 5 92 309 125 348 1.04e-17 83.6
MS.gene23624.t1 AT3G19480 28.340 247 168 6 67 307 89 332 1.45e-17 84.0
MS.gene23624.t1 AT4G34200 28.509 228 151 5 87 307 125 347 1.89e-17 83.6
MS.gene23624.t1 AT1G68010 27.347 245 154 5 94 315 94 337 2.42e-17 82.4
MS.gene23624.t1 AT1G17745 26.437 261 174 8 57 307 116 368 4.72e-17 82.4
MS.gene23624.t1 AT1G17745 25.000 284 176 8 57 307 116 395 1.74e-14 74.7

Find 83 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGAGATGTTGCTGATA+TGG 0.219276 8.1:+67719717 MS.gene23624:CDS
TTGGAGGATGAAGGAGAATT+CGG 0.310098 8.1:-67719437 None:intergenic
GTGTCAGCGTCGCGGAATTC+AGG 0.317303 8.1:+67719672 MS.gene23624:CDS
GGTCCATGAAGGAATACTTT+TGG 0.327666 8.1:-67719412 None:intergenic
GGACTGGTGTTTCAGTTAAC+AGG 0.337859 8.1:+67720881 MS.gene23624:intron
CGTAACTTCTGAGTCTTTGA+TGG 0.354762 8.1:+67721318 MS.gene23624:CDS
GGTGGAATCATAGTGAATAT+TGG 0.359465 8.1:+67721142 MS.gene23624:CDS
CTCCCAAAAGTATTCCTTCA+TGG 0.370851 8.1:+67719409 MS.gene23624:CDS
TGGAAATTGTGAGAAGGATT+TGG 0.375802 8.1:-67719460 None:intergenic
TGGAGGATGAAGGAGAATTC+GGG 0.378466 8.1:-67719436 None:intergenic
AATAAGTACGTTGTTGTTAG+TGG 0.379327 8.1:-67721050 None:intergenic
GAGAGGAAGGGTTTAAGATA+TGG 0.380318 8.1:-67719480 None:intergenic
TTGGAGGACATCAGCGTTGA+TGG 0.394089 8.1:-67719584 None:intergenic
TGGAGAGGAGGAAGAGAGGA+AGG 0.396752 8.1:-67719493 None:intergenic
AGGATTTGGTTGGAGGATGA+AGG 0.397061 8.1:-67719446 None:intergenic
GGAGATTGGAGGTGCTGGTT+TGG 0.404758 8.1:+67721216 MS.gene23624:CDS
GGAATTCAGGTTGCCGGAGC+TGG 0.410518 8.1:+67719685 MS.gene23624:CDS
TGTTTGATTGATGAGGAGAT+TGG 0.411582 8.1:+67721202 MS.gene23624:CDS
GGAGGCATGGTGAGGATTGA+GGG 0.414126 8.1:-67719527 None:intergenic
TGTTGACAATGTGTCTTGTT+TGG 0.423468 8.1:-67721093 None:intergenic
AGGAGCTCTCATTGATGAAA+AGG 0.427719 8.1:+67721168 MS.gene23624:CDS
AAAGATTGGAATTGTTGGTA+TGG 0.433889 8.1:+67720907 MS.gene23624:CDS
TGTGAGAAGGATTTGGTTGG+AGG 0.436630 8.1:-67719453 None:intergenic
AGGAGGCATGGTGAGGATTG+AGG 0.447068 8.1:-67719528 None:intergenic
CAAAGAAGTGATGTTAGCAT+TGG 0.453189 8.1:+67721114 MS.gene23624:CDS
TTGGTGGAGAGGAGGAAGAG+AGG 0.453807 8.1:-67719497 None:intergenic
GGTGCAGACAAATCGGAGGG+CGG 0.458262 8.1:-67719614 None:intergenic
CTTTGTTGATTGATGTCAGC+AGG 0.466747 8.1:+67719746 MS.gene23624:CDS
TAGAAAGAGTATGAAACTAA+TGG 0.471056 8.1:-67721007 None:intergenic
ATCGGAGGGCGGGAAGAAGT+TGG 0.472332 8.1:-67719603 None:intergenic
GTGCAGACAAATCGGAGGGC+GGG 0.475366 8.1:-67719613 None:intergenic
GATGAGGAGATTGGAGGTGC+TGG 0.475466 8.1:+67721211 MS.gene23624:CDS
GACAATAGCGGCAATGGAGG+AGG 0.495141 8.1:-67719545 None:intergenic
AAAGAAGTGATGTTAGCATT+GGG 0.496466 8.1:+67721115 MS.gene23624:CDS
GTGATGTTAGCATTGGGAAA+AGG 0.499562 8.1:+67721121 MS.gene23624:CDS
TTGGTAACGCGGTGGGATGA+AGG 0.501267 8.1:-67721472 None:intergenic
CGTCGCGGAATTCAGGTTGC+CGG 0.502409 8.1:+67719679 MS.gene23624:CDS
ATATGATCAGTTCCCGCGCT+GGG 0.504022 8.1:-67719637 None:intergenic
AAGATTGGAATTGTTGGTAT+GGG 0.505938 8.1:+67720908 MS.gene23624:CDS
ATTGTTGGTATGGGAAGAAT+CGG 0.507933 8.1:+67720917 MS.gene23624:CDS
GAGGATTGAGGGATAAGAAT+TGG 0.512540 8.1:-67719516 None:intergenic
GCATAATATCATACAACTCT+CGG 0.518640 8.1:+67720975 MS.gene23624:CDS
AAAACAATTCATAGTCTACT+TGG 0.521078 8.1:-67721491 None:intergenic
GATAAGAATTGGTGGAGAGG+AGG 0.525383 8.1:-67719505 None:intergenic
GGTAGAGACAATAGCGGCAA+TGG 0.528785 8.1:-67719551 None:intergenic
AATTGTGAGAAGGATTTGGT+TGG 0.530046 8.1:-67719456 None:intergenic
GTAACTTCTGAGTCTTTGAT+GGG 0.540085 8.1:+67721319 MS.gene23624:CDS
ATCATAGTGAATATTGGAAG+AGG 0.545971 8.1:+67721148 MS.gene23624:CDS
AACGTACTTATTCTCTGTTG+TGG 0.547209 8.1:+67721061 MS.gene23624:CDS
AATATGATCAGTTCCCGCGC+TGG 0.550267 8.1:-67719638 None:intergenic
ATGTTAGCATTGGGAAAAGG+TGG 0.551798 8.1:+67721124 MS.gene23624:CDS
GGAGAGGAGGAAGAGAGGAA+GGG 0.552439 8.1:-67719492 None:intergenic
GGAAAATTTCAGCTGCAGAT+CGG 0.554245 8.1:+67719767 MS.gene23624:CDS
AAGATATGGAAATTGTGAGA+AGG 0.559376 8.1:-67719466 None:intergenic
ATGATCAGTTCCCGCGCTGG+GGG 0.561074 8.1:-67719635 None:intergenic
GACAAGTTCAGAATTCAACT+TGG 0.563111 8.1:+67719800 MS.gene23624:CDS
AGTGGCAAGCTCTAAGACAC+TGG 0.563828 8.1:-67721032 None:intergenic
CGACAGCTGCATGTGGTGAA+AGG 0.572184 8.1:-67721297 None:intergenic
TTGATTGATGAGGAGATTGG+AGG 0.574084 8.1:+67721205 MS.gene23624:CDS
GATTGAGGGATAAGAATTGG+TGG 0.574137 8.1:-67719513 None:intergenic
AATTCCGCGACGCTGACACT+CGG 0.574720 8.1:-67719668 None:intergenic
TATGATCAGTTCCCGCGCTG+GGG 0.576764 8.1:-67719636 None:intergenic
AGGGATAAGAATTGGTGGAG+AGG 0.577295 8.1:-67719508 None:intergenic
AGAATTCGGGTGGTCCATGA+AGG 0.577437 8.1:-67719423 None:intergenic
GGAGGGCGGGAAGAAGTTGG+AGG 0.580189 8.1:-67719600 None:intergenic
GTTGAAGTGTTTGATTGATG+AGG 0.582035 8.1:+67721195 MS.gene23624:CDS
AGTCTACTTGGTAACGCGGT+GGG 0.596141 8.1:-67721479 None:intergenic
TCCAATGAAAAGAACTCTTG+AGG 0.600653 8.1:-67721265 None:intergenic
TAGCGGCAATGGAGGAGGCA+TGG 0.602465 8.1:-67719540 None:intergenic
AGCGTTGATGGTGTAGCCGC+CGG 0.605537 8.1:-67719572 None:intergenic
TTTCAGACCTTAGAACCAAG+TGG 0.606597 8.1:-67719829 None:intergenic
AGAGACAATAGCGGCAATGG+AGG 0.606863 8.1:-67719548 None:intergenic
ATTGCCGCTATTGTCTCTAC+CGG 0.616621 8.1:+67719553 MS.gene23624:CDS
TAGTCTACTTGGTAACGCGG+TGG 0.646962 8.1:-67721480 None:intergenic
CTCTCCGAGTGTCAGCGTCG+CGG 0.655545 8.1:+67719664 MS.gene23624:CDS
GCAATGGAGGAGGCATGGTG+AGG 0.666359 8.1:-67719535 None:intergenic
TCGGCTCAGAAGTCGCAAAG+AGG 0.673470 8.1:+67720936 MS.gene23624:CDS
GAAGTTACGACAGCTGCATG+TGG 0.679099 8.1:-67721304 None:intergenic
GCCGCTATTGTCTCTACCGG+CGG 0.698591 8.1:+67719556 MS.gene23624:CDS
AAGAACTCTTGAGGAACACG+AGG 0.714762 8.1:-67721256 None:intergenic
TCATAGTCTACTTGGTAACG+CGG 0.716703 8.1:-67721483 None:intergenic
AGGATGAAGGAGAATTCGGG+TGG 0.719251 8.1:-67719433 None:intergenic
GCCGCCGGTAGAGACAATAG+CGG 0.810449 8.1:-67719557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTTATATAATAAACA+TGG + chr8.1:67720859-67720878 MS.gene23624:intron 10.0%
!! TAACTTTATATAATAAACAT+GGG + chr8.1:67720860-67720879 MS.gene23624:intron 10.0%
!!! CAAATTAAATAATTTTTACT+CGG + chr8.1:67720460-67720479 MS.gene23624:intron 10.0%
!!! CAATAGTTTTTTTTTTTTAG+TGG - chr8.1:67720641-67720660 None:intergenic 15.0%
!!! GATATGAATTTCTTTTTTAA+AGG - chr8.1:67720435-67720454 None:intergenic 15.0%
!!! TTTTGTGGATTAAAAAAATA+TGG + chr8.1:67720274-67720293 MS.gene23624:intron 15.0%
!! TATGGTTAAGTTTATGAAAT+TGG + chr8.1:67720292-67720311 MS.gene23624:intron 20.0%
!!! ATCCAAACACTTAATTTTTT+TGG - chr8.1:67720341-67720360 None:intergenic 20.0%
!!! CTTCTGTTAAATTTCTTTTT+TGG - chr8.1:67720737-67720756 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTACCAAG+AGG + chr8.1:67720375-67720394 MS.gene23624:intron 20.0%
!!! GAGACAAACATTTTATAAAA+AGG - chr8.1:67720042-67720061 None:intergenic 20.0%
!!! TAAATTTCTTTTTTGGAACA+AGG - chr8.1:67720730-67720749 None:intergenic 20.0%
!!! TAAGTATTGCATAAAACATT+CGG + chr8.1:67720123-67720142 MS.gene23624:intron 20.0%
!!! TAGTTTTTTTTTTTTAGTGG+TGG - chr8.1:67720638-67720657 None:intergenic 20.0%
!!! TCCAAACACTTAATTTTTTT+GGG - chr8.1:67720340-67720359 None:intergenic 20.0%
!!! TTATGATCTAGAACTAAATT+CGG + chr8.1:67720223-67720242 MS.gene23624:intron 20.0%
! AAACTTAACTTATATCCTCT+TGG - chr8.1:67720393-67720412 None:intergenic 25.0%
! AATTAAGTGTTTGGATTCAA+AGG + chr8.1:67720345-67720364 MS.gene23624:intron 25.0%
! ACCCAAAAAAATTAAGTGTT+TGG + chr8.1:67720336-67720355 MS.gene23624:intron 25.0%
! ATTAAGTGTTTGGATTCAAA+GGG + chr8.1:67720346-67720365 MS.gene23624:intron 25.0%
! GTTATAAACTCTTTGAATAC+TGG - chr8.1:67720844-67720863 None:intergenic 25.0%
! TAGTTGATTGAATGTGTATT+TGG + chr8.1:67721412-67721431 MS.gene23624:intron 25.0%
! TTATATAATAAACATGGGAC+TGG + chr8.1:67720865-67720884 MS.gene23624:intron 25.0%
!! TAGAAAGAGTATGAAACTAA+TGG - chr8.1:67721010-67721029 None:intergenic 25.0%
!! TGGGAGATTATTATTTTCTT+GGG - chr8.1:67719395-67719414 None:intergenic 25.0%
!! TTGGGAGATTATTATTTTCT+TGG - chr8.1:67719396-67719415 None:intergenic 25.0%
!!! ATGATAGTGGTAAATTGTTA+AGG - chr8.1:67720772-67720791 None:intergenic 25.0%
!!! TTTTTTTTTTTAGTGGTGGT+CGG - chr8.1:67720634-67720653 None:intergenic 25.0%
AAAGAAGTGATGTTAGCATT+GGG + chr8.1:67721115-67721134 MS.gene23624:CDS 30.0%
AAAGATTGGAATTGTTGGTA+TGG + chr8.1:67720907-67720926 MS.gene23624:CDS 30.0%
AAGATATGGAAATTGTGAGA+AGG - chr8.1:67719469-67719488 None:intergenic 30.0%
AAGATTGGAATTGTTGGTAT+GGG + chr8.1:67720908-67720927 MS.gene23624:CDS 30.0%
ATCATAGTGAATATTGGAAG+AGG + chr8.1:67721148-67721167 MS.gene23624:CDS 30.0%
CAGTTAACAGGAAAAAAGAT+TGG + chr8.1:67720893-67720912 MS.gene23624:intron 30.0%
GAATCCAAAACATTGCTTAA+AGG - chr8.1:67720251-67720270 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr8.1:67720593-67720612 MS.gene23624:intron 30.0%
GCATAAAAGTCTGTTTCATA+TGG + chr8.1:67719882-67719901 MS.gene23624:intron 30.0%
GCATAATATCATACAACTCT+CGG + chr8.1:67720975-67720994 MS.gene23624:CDS 30.0%
GGAAAAAAGATTGGAATTGT+TGG + chr8.1:67720902-67720921 MS.gene23624:CDS 30.0%
TGCATAATATATGCAAGGTT+CGG + chr8.1:67720598-67720617 MS.gene23624:intron 30.0%
! AATAAGTACGTTGTTGTTAG+TGG - chr8.1:67721053-67721072 None:intergenic 30.0%
! TCAAATTTTGTTCCACAAGT+TGG - chr8.1:67721351-67721370 None:intergenic 30.0%
!!! TTTTTTTTTTAGTGGTGGTC+GGG - chr8.1:67720633-67720652 None:intergenic 30.0%
AACGTACTTATTCTCTGTTG+TGG + chr8.1:67721061-67721080 MS.gene23624:CDS 35.0%
AGAAAAAAGATTTCCAGCTC+CGG - chr8.1:67719701-67719720 None:intergenic 35.0%
ATGTTCTCATGTCATGATAG+TGG - chr8.1:67720785-67720804 None:intergenic 35.0%
ATTGTTGGTATGGGAAGAAT+CGG + chr8.1:67720917-67720936 MS.gene23624:CDS 35.0%
CAAAGAAGTGATGTTAGCAT+TGG + chr8.1:67721114-67721133 MS.gene23624:CDS 35.0%
CATAATATATGCAAGGTTCG+GGG + chr8.1:67720600-67720619 MS.gene23624:intron 35.0%
GACAAGTTCAGAATTCAACT+TGG + chr8.1:67719800-67719819 MS.gene23624:CDS 35.0%
GCATAATATATGCAAGGTTC+GGG + chr8.1:67720599-67720618 MS.gene23624:intron 35.0%
GGTGGAATCATAGTGAATAT+TGG + chr8.1:67721142-67721161 MS.gene23624:CDS 35.0%
GTAACTTCTGAGTCTTTGAT+GGG + chr8.1:67721319-67721338 MS.gene23624:CDS 35.0%
TCCAATGAAAAGAACTCTTG+AGG - chr8.1:67721268-67721287 None:intergenic 35.0%
TGGAAATTGTGAGAAGGATT+TGG - chr8.1:67719463-67719482 None:intergenic 35.0%
TGTTTGATTGATGAGGAGAT+TGG + chr8.1:67721202-67721221 MS.gene23624:CDS 35.0%
TTGTCTCACTTGATACAGAT+CGG + chr8.1:67720055-67720074 MS.gene23624:intron 35.0%
! AATTGTGAGAAGGATTTGGT+TGG - chr8.1:67719459-67719478 None:intergenic 35.0%
! GGATCCTTTAAGCAATGTTT+TGG + chr8.1:67720244-67720263 MS.gene23624:intron 35.0%
! GTCCATGAAGGAATACTTTT+GGG - chr8.1:67719414-67719433 None:intergenic 35.0%
! GTTGAAGTGTTTGATTGATG+AGG + chr8.1:67721195-67721214 MS.gene23624:CDS 35.0%
! TCAACTTGGAATTTTCCACT+TGG + chr8.1:67719814-67719833 MS.gene23624:CDS 35.0%
! TCCTCAAGAGTTCTTTTCAT+TGG + chr8.1:67721264-67721283 MS.gene23624:CDS 35.0%
! TGTTGACAATGTGTCTTGTT+TGG - chr8.1:67721096-67721115 None:intergenic 35.0%
!! TGTTTTGGATTCGAGTTTTG+TGG + chr8.1:67720259-67720278 MS.gene23624:intron 35.0%
!!! GAATTTTCCACTTGGTTCTA+AGG + chr8.1:67719822-67719841 MS.gene23624:CDS 35.0%
!!! TTTTTTTTTAGTGGTGGTCG+GGG - chr8.1:67720632-67720651 None:intergenic 35.0%
AGGAGCTCTCATTGATGAAA+AGG + chr8.1:67721168-67721187 MS.gene23624:CDS 40.0%
ATACTGGTAGCTAGCATGAA+TGG - chr8.1:67720828-67720847 None:intergenic 40.0%
CAGGTGGTACACAAGATATT+CGG + chr8.1:67719913-67719932 MS.gene23624:intron 40.0%
CGTAACTTCTGAGTCTTTGA+TGG + chr8.1:67721318-67721337 MS.gene23624:CDS 40.0%
CTGACATGCATTAGAAGTCT+TGG - chr8.1:67720679-67720698 None:intergenic 40.0%
GAGGATTGAGGGATAAGAAT+TGG - chr8.1:67719519-67719538 None:intergenic 40.0%
GATTGAGGGATAAGAATTGG+TGG - chr8.1:67719516-67719535 None:intergenic 40.0%
GGAAAATTTCAGCTGCAGAT+CGG + chr8.1:67719767-67719786 MS.gene23624:CDS 40.0%
GTTTCATATGGTACAGATGC+AGG + chr8.1:67719894-67719913 MS.gene23624:intron 40.0%
TTGATTGATGAGGAGATTGG+AGG + chr8.1:67721205-67721224 MS.gene23624:CDS 40.0%
TTGGAAAATCACACCATGCA+TGG + chr8.1:67720311-67720330 MS.gene23624:intron 40.0%
TTGGAGGATGAAGGAGAATT+CGG - chr8.1:67719440-67719459 None:intergenic 40.0%
TTTCAGACCTTAGAACCAAG+TGG - chr8.1:67719832-67719851 None:intergenic 40.0%
! ATGTTAGCATTGGGAAAAGG+TGG + chr8.1:67721124-67721143 MS.gene23624:CDS 40.0%
! CTTTGTTGATTGATGTCAGC+AGG + chr8.1:67719746-67719765 MS.gene23624:CDS 40.0%
! GAGAGGAAGGGTTTAAGATA+TGG - chr8.1:67719483-67719502 None:intergenic 40.0%
! GGTCCATGAAGGAATACTTT+TGG - chr8.1:67719415-67719434 None:intergenic 40.0%
! GTGATGTTAGCATTGGGAAA+AGG + chr8.1:67721121-67721140 MS.gene23624:CDS 40.0%
! TTCTGGAGATGTTGCTGATA+TGG + chr8.1:67719717-67719736 MS.gene23624:CDS 40.0%
!! CTCCCAAAAGTATTCCTTCA+TGG + chr8.1:67719409-67719428 MS.gene23624:CDS 40.0%
!! TCATAGTCTACTTGGTAACG+CGG - chr8.1:67721486-67721505 None:intergenic 40.0%
!!! GGAGCTGGAAATCTTTTTTC+TGG + chr8.1:67719700-67719719 MS.gene23624:CDS 40.0%
!!! TTTTTTTGGGTAGCCATGCA+TGG - chr8.1:67720327-67720346 None:intergenic 40.0%
AAGAACTCTTGAGGAACACG+AGG - chr8.1:67721259-67721278 None:intergenic 45.0%
AGGGATAAGAATTGGTGGAG+AGG - chr8.1:67719511-67719530 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr8.1:67720571-67720590 MS.gene23624:intron 45.0%
ATTGCCGCTATTGTCTCTAC+CGG + chr8.1:67719553-67719572 MS.gene23624:CDS 45.0%
GATAAGAATTGGTGGAGAGG+AGG - chr8.1:67719508-67719527 None:intergenic 45.0%
GATGGGTATTTGCCAACTTG+TGG + chr8.1:67721336-67721355 MS.gene23624:intron 45.0%
TCATATGGTACAGATGCAGG+TGG + chr8.1:67719897-67719916 MS.gene23624:intron 45.0%
TGGAGGATGAAGGAGAATTC+GGG - chr8.1:67719439-67719458 None:intergenic 45.0%
! AGGATTTGGTTGGAGGATGA+AGG - chr8.1:67719449-67719468 None:intergenic 45.0%
! GGACTGGTGTTTCAGTTAAC+AGG + chr8.1:67720881-67720900 MS.gene23624:intron 45.0%
! TGTGAGAAGGATTTGGTTGG+AGG - chr8.1:67719456-67719475 None:intergenic 45.0%
!! TTGTAAATATAAAAAAAAAT+TGG - chr8.1:67719955-67719974 None:intergenic 5.0%
AATATGATCAGTTCCCGCGC+TGG - chr8.1:67719641-67719660 None:intergenic 50.0%
AGAATTCGGGTGGTCCATGA+AGG - chr8.1:67719426-67719445 None:intergenic 50.0%
AGAGACAATAGCGGCAATGG+AGG - chr8.1:67719551-67719570 None:intergenic 50.0%
AGGATGAAGGAGAATTCGGG+TGG - chr8.1:67719436-67719455 None:intergenic 50.0%
ATATGATCAGTTCCCGCGCT+GGG - chr8.1:67719640-67719659 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG - chr8.1:67720570-67720589 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG + chr8.1:67720567-67720586 MS.gene23624:intron 50.0%
GAAGTTACGACAGCTGCATG+TGG - chr8.1:67721307-67721326 None:intergenic 50.0%
GGTAGAGACAATAGCGGCAA+TGG - chr8.1:67719554-67719573 None:intergenic 50.0%
! TTGGAGGACATCAGCGTTGA+TGG - chr8.1:67719587-67719606 None:intergenic 50.0%
!! AGTCTACTTGGTAACGCGGT+GGG - chr8.1:67721482-67721501 None:intergenic 50.0%
!! AGTGGCAAGCTCTAAGACAC+TGG - chr8.1:67721035-67721054 None:intergenic 50.0%
!! CAGCTGCAGATCGGTTTTTG+AGG + chr8.1:67719776-67719795 MS.gene23624:CDS 50.0%
!! TAGTCTACTTGGTAACGCGG+TGG - chr8.1:67721483-67721502 None:intergenic 50.0%
AATTCCGCGACGCTGACACT+CGG - chr8.1:67719671-67719690 None:intergenic 55.0%
CGACAGCTGCATGTGGTGAA+AGG - chr8.1:67721300-67721319 None:intergenic 55.0%
GACAATAGCGGCAATGGAGG+AGG - chr8.1:67719548-67719567 None:intergenic 55.0%
GGAGAGGAGGAAGAGAGGAA+GGG - chr8.1:67719495-67719514 None:intergenic 55.0%
TATGATCAGTTCCCGCGCTG+GGG - chr8.1:67719639-67719658 None:intergenic 55.0%
TCGGCTCAGAAGTCGCAAAG+AGG + chr8.1:67720936-67720955 MS.gene23624:CDS 55.0%
TGGAGAGGAGGAAGAGAGGA+AGG - chr8.1:67719496-67719515 None:intergenic 55.0%
TTGGTGGAGAGGAGGAAGAG+AGG - chr8.1:67719500-67719519 None:intergenic 55.0%
! AGGAGGCATGGTGAGGATTG+AGG - chr8.1:67719531-67719550 None:intergenic 55.0%
! GATGAGGAGATTGGAGGTGC+TGG + chr8.1:67721211-67721230 MS.gene23624:CDS 55.0%
! GGAGGCATGGTGAGGATTGA+GGG - chr8.1:67719530-67719549 None:intergenic 55.0%
!! GGAGATTGGAGGTGCTGGTT+TGG + chr8.1:67721216-67721235 MS.gene23624:CDS 55.0%
!! TTGGTAACGCGGTGGGATGA+AGG - chr8.1:67721475-67721494 None:intergenic 55.0%
ATCGGAGGGCGGGAAGAAGT+TGG - chr8.1:67719606-67719625 None:intergenic 60.0%
ATGATCAGTTCCCGCGCTGG+GGG - chr8.1:67719638-67719657 None:intergenic 60.0%
ATTTGTCTGCACCCCCAGCG+CGG + chr8.1:67719624-67719643 MS.gene23624:CDS 60.0%
GCCGCCGGTAGAGACAATAG+CGG - chr8.1:67719560-67719579 None:intergenic 60.0%
GCCGCTATTGTCTCTACCGG+CGG + chr8.1:67719556-67719575 MS.gene23624:CDS 60.0%
GGTGCAGACAAATCGGAGGG+CGG - chr8.1:67719617-67719636 None:intergenic 60.0%
GTGCAGACAAATCGGAGGGC+GGG - chr8.1:67719616-67719635 None:intergenic 60.0%
GTGTCAGCGTCGCGGAATTC+AGG + chr8.1:67719672-67719691 MS.gene23624:CDS 60.0%
TAGCGGCAATGGAGGAGGCA+TGG - chr8.1:67719543-67719562 None:intergenic 60.0%
! CGCTGGGGGTGCAGACAAAT+CGG - chr8.1:67719624-67719643 None:intergenic 60.0%
! GCAATGGAGGAGGCATGGTG+AGG - chr8.1:67719538-67719557 None:intergenic 60.0%
! GGGGGTGCAGACAAATCGGA+GGG - chr8.1:67719620-67719639 None:intergenic 60.0%
! TGGGGGTGCAGACAAATCGG+AGG - chr8.1:67719621-67719640 None:intergenic 60.0%
!! AGCGTTGATGGTGTAGCCGC+CGG - chr8.1:67719575-67719594 None:intergenic 60.0%
!! CGTCGCGGAATTCAGGTTGC+CGG + chr8.1:67719679-67719698 MS.gene23624:CDS 60.0%
!! GGAATTCAGGTTGCCGGAGC+TGG + chr8.1:67719685-67719704 MS.gene23624:CDS 60.0%
CTCTCCGAGTGTCAGCGTCG+CGG + chr8.1:67719664-67719683 MS.gene23624:CDS 65.0%
GGAGGGCGGGAAGAAGTTGG+AGG - chr8.1:67719603-67719622 None:intergenic 65.0%
TTTGTCTGCACCCCCAGCGC+GGG + chr8.1:67719625-67719644 MS.gene23624:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 67719361 67721505 67719361 ID=MS.gene23624
chr8.1 mRNA 67719361 67721505 67719361 ID=MS.gene23624.t1;Parent=MS.gene23624
chr8.1 exon 67719361 67719843 67719361 ID=MS.gene23624.t1.exon1;Parent=MS.gene23624.t1
chr8.1 CDS 67719361 67719843 67719361 ID=cds.MS.gene23624.t1;Parent=MS.gene23624.t1
chr8.1 exon 67720896 67721340 67720896 ID=MS.gene23624.t1.exon2;Parent=MS.gene23624.t1
chr8.1 CDS 67720896 67721340 67720896 ID=cds.MS.gene23624.t1;Parent=MS.gene23624.t1
chr8.1 exon 67721450 67721505 67721450 ID=MS.gene23624.t1.exon3;Parent=MS.gene23624.t1
chr8.1 CDS 67721450 67721505 67721450 ID=cds.MS.gene23624.t1;Parent=MS.gene23624.t1
Gene Sequence

>MS.gene23624

ATGGCAGATCAAAACAAAAACATTGAAGAGTCCCAAGAAAATAATAATCTCCCAAAAGTATTCCTTCATGGACCACCCGAATTCTCCTTCATCCTCCAACCAAATCCTTCTCACAATTTCCATATCTTAAACCCTTCCTCTCTTCCTCCTCTCCACCAATTCTTATCCCTCAATCCTCACCATGCCTCCTCCATTGCCGCTATTGTCTCTACCGGCGGCTACACCATCAACGCTGATGTCCTCCAACTTCTTCCCGCCCTCCGATTTGTCTGCACCCCCAGCGCGGGAACTGATCATATTGATCTCTCCGAGTGTCAGCGTCGCGGAATTCAGGTTGCCGGAGCTGGAAATCTTTTTTCTGGAGATGTTGCTGATATGGCTGTTGCTTTGTTGATTGATGTCAGCAGGAAAATTTCAGCTGCAGATCGGTTTTTGAGGAGACAAGTTCAGAATTCAACTTGGAATTTTCCACTTGGTTCTAAGGTCTGAAATTATTTATTAATTTATGAAGAAAATATATTGCATAAAAGTCTGTTTCATATGGTACAGATGCAGGTGGTACACAAGATATTCGGTATCATTTTTCATGATCCAATTTTTTTTTATATTTACAATTGTTTGTTCTATTCTAGTCAAGTCGTGTTTTTTTATTTATTTATTGTAACACAAAAGTCAAGTCCTTTTTATAAAATGTTTGTCTCACTTGATACAGATCGGTAATAACTTAAGTCTTGCATAAAATATTCTGTAACATTTTTAACTTAAGTATTGCATAAAACATTCGGTGACATTTTTATATGATTCTAATTTTATTTTTTTCTACAAATTGTATATTCTATGTACTTTGTTAATTAAAAAAGTTTTATGATCTAGAACTAAATTCGGATCCTTTAAGCAATGTTTTGGATTCGAGTTTTGTGGATTAAAAAAATATGGTTAAGTTTATGAAATTGGAAAATCACACCATGCATGGCTACCCAAAAAAATTAAGTGTTTGGATTCAAAGGGTATGCACTTTTTTTTTTTTTACCAAGAGGATATAAGTTAAGTTTACATTCATATCAAATACAGCCTTTAAAAAAGAAATTCATATCAAATACAAATTAAATAATTTTTACTCGGTCATCTTACTCATATATATCTGCATCTTAATATTGATTAACTTTCATTGTAAAGCTAATTTATGCTATTCAAACTATTGTTTGTCCTCATGAGCTTAGCTCAGTTGGTAGGACAATGCATAATATATGCAAGGTTCGGGGTTGAAACCCCGACCACCACTAAAAAAAAAAAACTATTGTTTATAATTTTAGATCCAAGACTTCTAATGCATGTCAGACAGTTTGAATCATGTTGATCTTCATGTCCTTGTTCCAAAAAAGAAATTTAACAGAAGAAATATATTTAACCTTAACAATTTACCACTATCATGACATGAGAACATATAGTATGTGAATTTGACTTCCATTCATGCTAGCTACCAGTATTCAAAGAGTTTATAACTTTATATAATAAACATGGGACTGGTGTTTCAGTTAACAGGAAAAAAGATTGGAATTGTTGGTATGGGAAGAATCGGCTCAGAAGTCGCAAAGAGGCTTGAAGCATTCAGTTGCATAATATCATACAACTCTCGGAACAAAAAACCATTAGTTTCATACTCTTTCTATTCCAGTGTCTTAGAGCTTGCCACTAACAACAACGTACTTATTCTCTGTTGTGGACTAAACGACCAAACAAGACACATTGTCAACAAAGAAGTGATGTTAGCATTGGGAAAAGGTGGAATCATAGTGAATATTGGAAGAGGAGCTCTCATTGATGAAAAGGAATTGTTGAAGTGTTTGATTGATGAGGAGATTGGAGGTGCTGGTTTGGATGTGTTTGAGAATGAACCTCGTGTTCCTCAAGAGTTCTTTTCATTGGATAATGTTGTCCTTTCACCACATGCAGCTGTCGTAACTTCTGAGTCTTTGATGGGTATTTGCCAACTTGTGGAACAAAATTTGACAGCATTCTTTTCAAATAAAGCTCTGATTAATCAAGTTATATAGTTGATTGAATGTGTATTTGGAAATCTCAAATTCAGCGTTAACATTCATCGCACGTTTCCTTCATCCCACCGCGTTACCAAGTAGACTATGA
Protein sequence

>MS.gene23624.t1

MADQNKNIEESQENNNLPKVFLHGPPEFSFILQPNPSHNFHILNPSSLPPLHQFLSLNPHHASSIAAIVSTGGYTINADVLQLLPALRFVCTPSAGTDHIDLSECQRRGIQVAGAGNLFSGDVADMAVALLIDVSRKISAADRFLRRQVQNSTWNFPLGSKLTGKKIGIVGMGRIGSEVAKRLEAFSCIISYNSRNKKPLVSYSFYSSVLELATNNNVLILCCGLNDQTRHIVNKEVMLALGKGGIIVNIGRGALIDEKELLKCLIDEEIGGAGLDVFENEPRVPQEFFSLDNVVLSPHAAVVTSESLMALTFIARFLHPTALPSRL