Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23633.t1 | XP_013444995.1 | 90.8 | 326 | 29 | 1 | 1 | 325 | 1 | 326 | 1.50E-166 | 595.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23633.t1 | Q9LE33 | 53.5 | 327 | 137 | 5 | 4 | 324 | 3 | 320 | 7.6e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23633.t1 | A0A072TZQ8 | 90.8 | 326 | 29 | 1 | 1 | 325 | 1 | 326 | 1.1e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23633 | MS.gene24946 | PPI |
| MS.gene23633 | MS.gene038363 | PPI |
| MS.gene23633 | MS.gene33396 | PPI |
| MS.gene23633 | MS.gene065032 | PPI |
| MS.gene23633 | MS.gene029300 | PPI |
| MS.gene23633 | MS.gene068263 | PPI |
| MS.gene23633 | MS.gene24947 | PPI |
| MS.gene23633 | MS.gene068259 | PPI |
| MS.gene23633 | MS.gene76198 | PPI |
| MS.gene017129 | MS.gene23633 | PPI |
| MS.gene23633 | MS.gene37513 | PPI |
| MS.gene23633 | MS.gene068262 | PPI |
| MS.gene23633 | MS.gene07262 | PPI |
| MS.gene23633 | MS.gene33394 | PPI |
| MS.gene23633 | MS.gene74946 | PPI |
| MS.gene23633 | MS.gene030057 | PPI |
| MS.gene23633 | MS.gene062351 | PPI |
| MS.gene23633 | MS.gene20834 | PPI |
| MS.gene23633 | MS.gene33395 | PPI |
| MS.gene23633 | MS.gene20783 | PPI |
| MS.gene23633 | MS.gene24945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23633.t1 | MTR_8g033410 | 90.798 | 326 | 29 | 1 | 1 | 325 | 1 | 326 | 0.0 | 608 |
| MS.gene23633.t1 | MTR_8g033400 | 83.025 | 324 | 54 | 1 | 2 | 325 | 11 | 333 | 0.0 | 551 |
| MS.gene23633.t1 | MTR_8g033390 | 59.813 | 321 | 128 | 1 | 6 | 325 | 3 | 323 | 1.56e-141 | 403 |
| MS.gene23633.t1 | MTR_7g075830 | 51.582 | 316 | 128 | 6 | 29 | 324 | 4 | 314 | 1.32e-104 | 309 |
| MS.gene23633.t1 | MTR_4g013090 | 42.345 | 307 | 166 | 3 | 22 | 325 | 15 | 313 | 2.32e-84 | 257 |
| MS.gene23633.t1 | MTR_4g012960 | 42.434 | 304 | 167 | 2 | 22 | 325 | 15 | 310 | 2.65e-84 | 257 |
| MS.gene23633.t1 | MTR_4g013100 | 40.717 | 307 | 171 | 3 | 22 | 325 | 16 | 314 | 6.84e-83 | 253 |
| MS.gene23633.t1 | MTR_2g101840 | 44.408 | 304 | 163 | 3 | 23 | 325 | 16 | 314 | 3.44e-79 | 244 |
| MS.gene23633.t1 | MTR_4g013135 | 40.391 | 307 | 172 | 3 | 22 | 325 | 15 | 313 | 4.43e-68 | 215 |
| MS.gene23633.t1 | MTR_3g005970 | 27.089 | 347 | 199 | 11 | 6 | 320 | 51 | 375 | 1.40e-28 | 114 |
| MS.gene23633.t1 | MTR_1g112510 | 26.953 | 256 | 167 | 2 | 85 | 320 | 94 | 349 | 8.87e-24 | 100 |
| MS.gene23633.t1 | MTR_4g005880 | 26.336 | 262 | 170 | 7 | 78 | 323 | 152 | 406 | 2.11e-18 | 86.3 |
| MS.gene23633.t1 | MTR_1g107480 | 25.882 | 255 | 174 | 6 | 78 | 324 | 119 | 366 | 3.92e-17 | 82.4 |
| MS.gene23633.t1 | MTR_6g007175 | 23.592 | 284 | 173 | 9 | 39 | 311 | 64 | 314 | 1.95e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23633.t1 | AT2G45630 | 53.067 | 326 | 143 | 6 | 5 | 325 | 18 | 338 | 6.13e-114 | 333 |
| MS.gene23633.t1 | AT1G12550 | 53.517 | 327 | 137 | 5 | 4 | 324 | 3 | 320 | 5.55e-113 | 330 |
| MS.gene23633.t1 | AT1G79870 | 42.671 | 307 | 165 | 3 | 22 | 325 | 15 | 313 | 1.51e-81 | 250 |
| MS.gene23633.t1 | AT1G79870 | 40.461 | 304 | 157 | 3 | 22 | 325 | 15 | 294 | 5.27e-71 | 222 |
| MS.gene23633.t1 | AT2G45630 | 46.104 | 154 | 74 | 5 | 5 | 154 | 18 | 166 | 2.90e-34 | 124 |
| MS.gene23633.t1 | AT5G28310 | 39.378 | 193 | 64 | 4 | 135 | 325 | 92 | 233 | 6.02e-31 | 117 |
| MS.gene23633.t1 | AT1G72190 | 25.148 | 338 | 214 | 9 | 4 | 320 | 47 | 366 | 1.77e-30 | 119 |
| MS.gene23633.t1 | AT1G68010 | 27.344 | 256 | 166 | 2 | 85 | 320 | 94 | 349 | 1.02e-22 | 97.8 |
| MS.gene23633.t1 | AT1G68010 | 28.295 | 258 | 164 | 3 | 85 | 321 | 94 | 351 | 2.58e-22 | 96.3 |
| MS.gene23633.t1 | AT1G68010 | 27.237 | 257 | 166 | 3 | 85 | 320 | 94 | 350 | 4.70e-21 | 93.2 |
| MS.gene23633.t1 | AT1G17745 | 25.856 | 263 | 170 | 7 | 78 | 323 | 146 | 400 | 3.88e-19 | 88.6 |
| MS.gene23633.t1 | AT3G19480 | 27.843 | 255 | 169 | 6 | 78 | 324 | 110 | 357 | 2.99e-18 | 85.9 |
| MS.gene23633.t1 | AT4G34200 | 25.591 | 254 | 176 | 5 | 78 | 324 | 125 | 372 | 1.03e-17 | 84.3 |
| MS.gene23633.t1 | AT5G14780 | 24.324 | 296 | 193 | 7 | 39 | 322 | 67 | 343 | 1.14e-17 | 83.2 |
| MS.gene23633.t1 | AT5G14780 | 24.324 | 296 | 193 | 7 | 39 | 322 | 79 | 355 | 1.22e-17 | 83.2 |
| MS.gene23633.t1 | AT5G14780 | 24.324 | 296 | 193 | 7 | 39 | 322 | 93 | 369 | 1.48e-17 | 83.2 |
| MS.gene23633.t1 | AT1G17745 | 24.390 | 287 | 175 | 7 | 78 | 325 | 146 | 429 | 4.13e-16 | 79.3 |
Find 98 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGGTATCCGGGGAATT+CGG | 0.279363 | 8.1:-67596265 | None:intergenic |
| TTCGGAGGATGTTGCTGATA+TGG | 0.291825 | 8.1:+67596545 | MS.gene23633:CDS |
| TTACTGGTGTTTCAGATATC+AGG | 0.305036 | 8.1:+67598017 | MS.gene23633:intron |
| CATTTCCGCCATTCTCTGTA+TGG | 0.309952 | 8.1:+67596380 | MS.gene23633:CDS |
| GAGAAGATGGGTTTATGATA+TGG | 0.312632 | 8.1:-67596308 | None:intergenic |
| TGGGAGATTCTTTGTTTCAT+AGG | 0.317418 | 8.1:-67596220 | None:intergenic |
| TCCAATGAAAAGAACTCTTT+AGG | 0.330331 | 8.1:-67598401 | None:intergenic |
| GGACCGTGAAAGAATACTTT+TGG | 0.335420 | 8.1:-67596240 | None:intergenic |
| TGGAGGTATCCGGGGAATTC+GGG | 0.335490 | 8.1:-67596264 | None:intergenic |
| AATTCAATCAACTATATAAC+TGG | 0.342058 | 8.1:-67598539 | None:intergenic |
| GGTTCAGTCGCCTGCATCTT+GGG | 0.351274 | 8.1:+67596632 | MS.gene23633:CDS |
| TGGAGAGAGGGAAGAGAAGA+TGG | 0.355161 | 8.1:-67596321 | None:intergenic |
| TGATATGGCTGTGGCTTTGT+TGG | 0.364353 | 8.1:+67596560 | MS.gene23633:CDS |
| TGAGATTGGAGGTGCTGGTT+TGG | 0.372193 | 8.1:+67598352 | MS.gene23633:CDS |
| AGGATTGGGTTGGAGGTATC+CGG | 0.375735 | 8.1:-67596274 | None:intergenic |
| AGGGAGAAGGTGGAGAATTT+CGG | 0.376049 | 8.1:-67596421 | None:intergenic |
| AAAGATTGGAATTGTTGGTC+TGG | 0.384913 | 8.1:+67598043 | MS.gene23633:CDS |
| ACAGAAGTCATGTTGGCATT+AGG | 0.391006 | 8.1:+67598251 | MS.gene23633:CDS |
| CATACAGAGAATGGCGGAAA+TGG | 0.393518 | 8.1:-67596379 | None:intergenic |
| GGAATCCAGGTTGCCAATGC+TGG | 0.399143 | 8.1:+67596513 | MS.gene23633:CDS |
| TGTGAGAAGGATTGGGTTGG+AGG | 0.402867 | 8.1:-67596281 | None:intergenic |
| CTTAACTTCAGAGTCACATA+TGG | 0.415771 | 8.1:+67598454 | MS.gene23633:CDS |
| ATGGAAGTTGTGAGAAGGAT+TGG | 0.424861 | 8.1:-67596289 | None:intergenic |
| GAGATCAATGTGATTAGTTC+CGG | 0.426821 | 8.1:-67596472 | None:intergenic |
| ATTGTTGGTCTGGGAAGAAT+TGG | 0.427657 | 8.1:+67598053 | MS.gene23633:CDS |
| AGGTGCTCTCATTGATGAAA+AGG | 0.435320 | 8.1:+67598304 | MS.gene23633:CDS |
| TGTTTGATTGAAAATGAGAT+TGG | 0.437530 | 8.1:+67598338 | MS.gene23633:CDS |
| CTCCCAAAAGTATTCTTTCA+CGG | 0.439453 | 8.1:+67596237 | MS.gene23633:CDS |
| GGATTGGGTTGGAGGTATCC+GGG | 0.451687 | 8.1:-67596273 | None:intergenic |
| TCTAACACAGTGGAATAGTA+AGG | 0.453055 | 8.1:-67598158 | None:intergenic |
| AAGATTGGAATTGTTGGTCT+GGG | 0.454839 | 8.1:+67598044 | MS.gene23633:CDS |
| TGTTGACAATGTGCCTCGTT+TGG | 0.459122 | 8.1:-67598229 | None:intergenic |
| GGAAGCATTGTGAGGGTTGG+TGG | 0.461511 | 8.1:-67596355 | None:intergenic |
| GAGGGTTGGTGGATATGAAT+TGG | 0.461733 | 8.1:-67596344 | None:intergenic |
| TGGAAGTTGTGAGAAGGATT+GGG | 0.461867 | 8.1:-67596288 | None:intergenic |
| GCAAAGAGGCTTGAAACATT+CGG | 0.463871 | 8.1:+67598086 | MS.gene23633:CDS |
| TCTCGACGAGTGTCGGCGAC+GGG | 0.476820 | 8.1:+67596491 | MS.gene23633:CDS |
| TATTTCCAGCATTGGCAACC+TGG | 0.479060 | 8.1:-67596518 | None:intergenic |
| GGAAAATTTCAGCGGCGGAT+CGG | 0.482386 | 8.1:+67596595 | MS.gene23633:CDS |
| GTGTCGGCGACGGGGAATCC+AGG | 0.484884 | 8.1:+67596500 | MS.gene23633:CDS |
| AGGTTCAGTCGCCTGCATCT+TGG | 0.488282 | 8.1:+67596631 | MS.gene23633:CDS |
| CACGGTCCACCCGAATTCCC+CGG | 0.495030 | 8.1:+67596255 | MS.gene23633:CDS |
| ATTTCCGCCATTCTCTGTAT+GGG | 0.500386 | 8.1:+67596381 | MS.gene23633:CDS |
| GGAGAGAGGGAAGAGAAGAT+GGG | 0.500439 | 8.1:-67596320 | None:intergenic |
| GTGGCTTTGTTGGTTGATGT+TGG | 0.505017 | 8.1:+67596570 | MS.gene23633:CDS |
| TAGTAAGGGTACGAAACTAA+TGG | 0.505628 | 8.1:-67598143 | None:intergenic |
| GAAAATGAGATTGGAGGTGC+TGG | 0.505907 | 8.1:+67598347 | MS.gene23633:CDS |
| TTCATCATGACCTCCAGTGC+CGG | 0.509827 | 8.1:+67596453 | MS.gene23633:CDS |
| CACTGGAGGTCATGATGAAA+CGG | 0.512733 | 8.1:-67596449 | None:intergenic |
| GGCGGAATCATAGTGAATGT+TGG | 0.516959 | 8.1:+67598278 | MS.gene23633:CDS |
| CTTTGTTGGTTGATGTTGGT+AGG | 0.517180 | 8.1:+67596574 | MS.gene23633:CDS |
| AATGTGATTAGTTCCGGCAC+TGG | 0.524377 | 8.1:-67596466 | None:intergenic |
| GCATGATATCATACAACTCT+CGG | 0.528430 | 8.1:+67598111 | MS.gene23633:CDS |
| TATGGGTATCTGCCAACTTG+TGG | 0.528506 | 8.1:+67598472 | MS.gene23633:CDS |
| AGTTGTGAGAAGGATTGGGT+TGG | 0.533367 | 8.1:-67596284 | None:intergenic |
| ACATTGATCTCGACGAGTGT+CGG | 0.535688 | 8.1:+67596484 | MS.gene23633:CDS |
| GTCATGTTGGCATTAGGAAA+AGG | 0.535996 | 8.1:+67598257 | MS.gene23633:CDS |
| GTCATGATGAAACGGAGGCA+AGG | 0.537685 | 8.1:-67596441 | None:intergenic |
| ATCTCGACGAGTGTCGGCGA+CGG | 0.547926 | 8.1:+67596490 | MS.gene23633:CDS |
| GGAGGAAGCATTGTGAGGGT+TGG | 0.551682 | 8.1:-67596358 | None:intergenic |
| AGTGGAAAATCCCAAGATGC+AGG | 0.552755 | 8.1:-67596642 | None:intergenic |
| GATATGAATTGGTGGAGAGA+GGG | 0.554083 | 8.1:-67596333 | None:intergenic |
| TCATGATGAAACGGAGGCAA+GGG | 0.556509 | 8.1:-67596440 | None:intergenic |
| TTGATTGAAAATGAGATTGG+AGG | 0.564611 | 8.1:+67598341 | MS.gene23633:CDS |
| GTATAGACCCATACAGAGAA+TGG | 0.566297 | 8.1:-67596388 | None:intergenic |
| GGATATGAATTGGTGGAGAG+AGG | 0.569776 | 8.1:-67596334 | None:intergenic |
| ATGATATGGAAGTTGTGAGA+AGG | 0.571710 | 8.1:-67596294 | None:intergenic |
| GGAGAATTTCGGCGTTGAGA+GGG | 0.572565 | 8.1:-67596410 | None:intergenic |
| ACAGAGAATGGCGGAAATGG+AGG | 0.573109 | 8.1:-67596376 | None:intergenic |
| ATCATAGTGAATGTTGGAAG+AGG | 0.578453 | 8.1:+67598284 | MS.gene23633:CDS |
| GTGATTAGTTCCGGCACTGG+AGG | 0.582358 | 8.1:-67596463 | None:intergenic |
| TTAACTTCAGAGTCACATAT+GGG | 0.586174 | 8.1:+67598455 | MS.gene23633:CDS |
| AAGAACTCTTTAGGAACATG+AGG | 0.587555 | 8.1:-67598392 | None:intergenic |
| TGAAACGGAGGCAAGGGAGA+AGG | 0.587990 | 8.1:-67596434 | None:intergenic |
| AACGGAGGCAAGGGAGAAGG+TGG | 0.589396 | 8.1:-67596431 | None:intergenic |
| AGGTATCCGGGGAATTCGGG+TGG | 0.591032 | 8.1:-67596261 | None:intergenic |
| GGATGTTGCTGATATGGCTG+TGG | 0.591447 | 8.1:+67596551 | MS.gene23633:CDS |
| AGACAGCTGCATGAGGTGAA+AGG | 0.593691 | 8.1:-67598433 | None:intergenic |
| TGGAGAATTTCGGCGTTGAG+AGG | 0.594027 | 8.1:-67596411 | None:intergenic |
| GGTTGGTGGATATGAATTGG+TGG | 0.599312 | 8.1:-67596341 | None:intergenic |
| TATATAACTGGAGTGATCAG+AGG | 0.618653 | 8.1:-67598527 | None:intergenic |
| AAATGGAGGAAGCATTGTGA+GGG | 0.624570 | 8.1:-67596362 | None:intergenic |
| GTGATTTAAACGACCAAACG+AGG | 0.626563 | 8.1:+67598216 | MS.gene23633:CDS |
| CTAACACAGTGGAATAGTAA+GGG | 0.627854 | 8.1:-67598157 | None:intergenic |
| GATTGGGTTGGAGGTATCCG+GGG | 0.628352 | 8.1:-67596272 | None:intergenic |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.1:-67596660 | None:intergenic |
| GAAATGGAGGAAGCATTGTG+AGG | 0.633991 | 8.1:-67596363 | None:intergenic |
| TGGTAGGAAAATTTCAGCGG+CGG | 0.638621 | 8.1:+67596590 | MS.gene23633:CDS |
| TGTCAACACAGAAGTCATGT+TGG | 0.641258 | 8.1:+67598244 | MS.gene23633:CDS |
| TTGGCTTAGAAGTTGCAAAG+AGG | 0.643774 | 8.1:+67598072 | MS.gene23633:CDS |
| CTCGACGAGTGTCGGCGACG+GGG | 0.648516 | 8.1:+67596492 | MS.gene23633:CDS |
| GAAGTTAAGACAGCTGCATG+AGG | 0.653941 | 8.1:-67598440 | None:intergenic |
| TGTTGGTAGGAAAATTTCAG+CGG | 0.668856 | 8.1:+67596587 | MS.gene23633:CDS |
| ATGTTGGCATTAGGAAAAGG+CGG | 0.693207 | 8.1:+67598260 | MS.gene23633:CDS |
| ACAACAGAGAATGAGTACAC+TGG | 0.694649 | 8.1:-67598195 | None:intergenic |
| TGGAGGTCATGATGAAACGG+AGG | 0.697117 | 8.1:-67596446 | None:intergenic |
| TAGACCCATACAGAGAATGG+CGG | 0.718189 | 8.1:-67596385 | None:intergenic |
| TGTTGCAAGCTCTAACACAG+TGG | 0.748331 | 8.1:-67598168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTCTTTTATTATGT+AGG | - | chr8.1:67597153-67597172 | None:intergenic | 10.0% |
| !!! | TCATTAATTATTTTTATTAG+GGG | - | chr8.1:67596986-67597005 | None:intergenic | 10.0% |
| !! | AAATTCTTGACAAAAAAAAA+TGG | + | chr8.1:67597489-67597508 | MS.gene23633:intron | 15.0% |
| !! | TTAAAGTAGATTATCAAAAA+TGG | - | chr8.1:67597664-67597683 | None:intergenic | 15.0% |
| !! | ATTAATGATAATCTGAATGA+TGG | + | chr8.1:67597302-67597321 | MS.gene23633:intron | 20.0% |
| !! | TCACTACTCTAAATTAAAAA+TGG | + | chr8.1:67596960-67596979 | MS.gene23633:intron | 20.0% |
| !! | TGACAAAAATAAAGAGTAAA+TGG | - | chr8.1:67597108-67597127 | None:intergenic | 20.0% |
| !! | TTTGAAAGTTAAGATAACTA+TGG | + | chr8.1:67597464-67597483 | MS.gene23633:intron | 20.0% |
| !!! | TTTGATAATAAACATGTTAC+TGG | + | chr8.1:67598001-67598020 | MS.gene23633:intron | 20.0% |
| ! | ACATTTGAACAACAAATACA+TGG | - | chr8.1:67596745-67596764 | None:intergenic | 25.0% |
| ! | CTTAGCTTATATTTATTCTC+TGG | + | chr8.1:67597690-67597709 | MS.gene23633:intron | 25.0% |
| ! | TCAAAAATGGCTATAAGATT+TGG | - | chr8.1:67597651-67597670 | None:intergenic | 25.0% |
| ! | TGTTTGATTGAAAATGAGAT+TGG | + | chr8.1:67598338-67598357 | MS.gene23633:CDS | 25.0% |
| !! | ATCAAAGTTGTCTTTTCAAA+TGG | + | chr8.1:67596926-67596945 | MS.gene23633:intron | 25.0% |
| !!! | AACCATTTTGTGATAATGTT+TGG | + | chr8.1:67596855-67596874 | MS.gene23633:intron | 25.0% |
| !!! | CAATGCTGGAAATATTTTTT+CGG | + | chr8.1:67596527-67596546 | MS.gene23633:CDS | 25.0% |
| !!! | GGGAAAAACATATTTTGATA+GGG | + | chr8.1:67597882-67597901 | MS.gene23633:intron | 25.0% |
| AAGGTGAATTTCTAACTACT+AGG | - | chr8.1:67597801-67597820 | None:intergenic | 30.0% | |
| AATTTCAAGGTCATAGAAGA+TGG | - | chr8.1:67597623-67597642 | None:intergenic | 30.0% | |
| CACATGATGTTAGAAAAACA+AGG | + | chr8.1:67596897-67596916 | MS.gene23633:intron | 30.0% | |
| CAGATATCAGGAAAAAAGAT+TGG | + | chr8.1:67598029-67598048 | MS.gene23633:intron | 30.0% | |
| CATTATCACAAAATGGTTGT+AGG | - | chr8.1:67596853-67596872 | None:intergenic | 30.0% | |
| CGAAAAAATATTTCCAGCAT+TGG | - | chr8.1:67596529-67596548 | None:intergenic | 30.0% | |
| GATACCCCTACAAATAATTA+AGG | + | chr8.1:67597197-67597216 | MS.gene23633:intron | 30.0% | |
| GGAAAAAAGATTGGAATTGT+TGG | + | chr8.1:67598038-67598057 | MS.gene23633:CDS | 30.0% | |
| GTCCAAACATTATCACAAAA+TGG | - | chr8.1:67596860-67596879 | None:intergenic | 30.0% | |
| TCCAATGAAAAGAACTCTTT+AGG | - | chr8.1:67598404-67598423 | None:intergenic | 30.0% | |
| TTAACTTCAGAGTCACATAT+GGG | + | chr8.1:67598455-67598474 | MS.gene23633:CDS | 30.0% | |
| TTGATTGAAAATGAGATTGG+AGG | + | chr8.1:67598341-67598360 | MS.gene23633:CDS | 30.0% | |
| ! | AAATGGCTATAAGATTTGGT+TGG | - | chr8.1:67597647-67597666 | None:intergenic | 30.0% |
| ! | CATGTCTATTTTCATACTAG+TGG | - | chr8.1:67597938-67597957 | None:intergenic | 30.0% |
| ! | TCAAATTTTGTTCCACAAGT+TGG | - | chr8.1:67598487-67598506 | None:intergenic | 30.0% |
| ! | TCATACTAGTGGCATTTTAA+AGG | - | chr8.1:67597927-67597946 | None:intergenic | 30.0% |
| ! | TCCTAAAGAGTTCTTTTCAT+TGG | + | chr8.1:67598400-67598419 | MS.gene23633:CDS | 30.0% |
| !! | AAAGAGTAAATGGACTAGTT+AGG | - | chr8.1:67597098-67597117 | None:intergenic | 30.0% |
| !! | AGATTTGGTTGGTAATTTCA+AGG | - | chr8.1:67597636-67597655 | None:intergenic | 30.0% |
| !!! | GGGGAAAAACATATTTTGAT+AGG | + | chr8.1:67597881-67597900 | MS.gene23633:intron | 30.0% |
| AAAGATTGGAATTGTTGGTC+TGG | + | chr8.1:67598043-67598062 | MS.gene23633:CDS | 35.0% | |
| AGGGGCCTTAATTATTTGTA+GGG | - | chr8.1:67597205-67597224 | None:intergenic | 35.0% | |
| ATCATAGTGAATGTTGGAAG+AGG | + | chr8.1:67598284-67598303 | MS.gene23633:CDS | 35.0% | |
| ATGATATGGAAGTTGTGAGA+AGG | - | chr8.1:67596297-67596316 | None:intergenic | 35.0% | |
| CAGTATAATTGTTGGGATGT+AGG | - | chr8.1:67597178-67597197 | None:intergenic | 35.0% | |
| CTAACACAGTGGAATAGTAA+GGG | - | chr8.1:67598160-67598179 | None:intergenic | 35.0% | |
| CTCCATTAGACAAAAAGTAG+CGG | + | chr8.1:67596772-67596791 | MS.gene23633:intron | 35.0% | |
| CTTAACTTCAGAGTCACATA+TGG | + | chr8.1:67598454-67598473 | MS.gene23633:CDS | 35.0% | |
| GCATGATATCATACAACTCT+CGG | + | chr8.1:67598111-67598130 | MS.gene23633:CDS | 35.0% | |
| TAATTAAGGCCCCTGTAAAT+TGG | + | chr8.1:67597211-67597230 | MS.gene23633:intron | 35.0% | |
| TATATAACTGGAGTGATCAG+AGG | - | chr8.1:67598530-67598549 | None:intergenic | 35.0% | |
| TCACTTATTCACTATTCGCT+AGG | - | chr8.1:67596809-67596828 | None:intergenic | 35.0% | |
| TCTAACACAGTGGAATAGTA+AGG | - | chr8.1:67598161-67598180 | None:intergenic | 35.0% | |
| TTACTGGTGTTTCAGATATC+AGG | + | chr8.1:67598017-67598036 | MS.gene23633:intron | 35.0% | |
| ! | AAGAACTCTTTAGGAACATG+AGG | - | chr8.1:67598395-67598414 | None:intergenic | 35.0% |
| ! | AAGATTGGAATTGTTGGTCT+GGG | + | chr8.1:67598044-67598063 | MS.gene23633:CDS | 35.0% |
| ! | GACCGTGAAAGAATACTTTT+GGG | - | chr8.1:67596242-67596261 | None:intergenic | 35.0% |
| ! | GAGAAGATGGGTTTATGATA+TGG | - | chr8.1:67596311-67596330 | None:intergenic | 35.0% |
| ! | GAGATCAATGTGATTAGTTC+CGG | - | chr8.1:67596475-67596494 | None:intergenic | 35.0% |
| ! | GGGGTATCAGTATAATTGTT+GGG | - | chr8.1:67597185-67597204 | None:intergenic | 35.0% |
| ! | TAGTAAGGGTACGAAACTAA+TGG | - | chr8.1:67598146-67598165 | None:intergenic | 35.0% |
| ! | TGGGAGATTCTTTGTTTCAT+AGG | - | chr8.1:67596223-67596242 | None:intergenic | 35.0% |
| ! | TGTTGGTAGGAAAATTTCAG+CGG | + | chr8.1:67596587-67596606 | MS.gene23633:CDS | 35.0% |
| !! | AGGGGTATCAGTATAATTGT+TGG | - | chr8.1:67597186-67597205 | None:intergenic | 35.0% |
| !! | CTAGTGGCATTTTAAAGGTA+AGG | - | chr8.1:67597922-67597941 | None:intergenic | 35.0% |
| !! | CTCCCAAAAGTATTCTTTCA+CGG | + | chr8.1:67596237-67596256 | MS.gene23633:CDS | 35.0% |
| !!! | ATCCGCTACTTTTTGTCTAA+TGG | - | chr8.1:67596777-67596796 | None:intergenic | 35.0% |
| !!! | TGCTGGAAATATTTTTTCGG+AGG | + | chr8.1:67596530-67596549 | MS.gene23633:CDS | 35.0% |
| ACAACAGAGAATGAGTACAC+TGG | - | chr8.1:67598198-67598217 | None:intergenic | 40.0% | |
| ACAGAAGTCATGTTGGCATT+AGG | + | chr8.1:67598251-67598270 | MS.gene23633:CDS | 40.0% | |
| AGCTCTTGGAGACTTATTCT+CGG | + | chr8.1:67597860-67597879 | MS.gene23633:intron | 40.0% | |
| AGGTGCTCTCATTGATGAAA+AGG | + | chr8.1:67598304-67598323 | MS.gene23633:CDS | 40.0% | |
| ATGGAAGTTGTGAGAAGGAT+TGG | - | chr8.1:67596292-67596311 | None:intergenic | 40.0% | |
| ATGTTGGCATTAGGAAAAGG+CGG | + | chr8.1:67598260-67598279 | MS.gene23633:CDS | 40.0% | |
| ATTTCCGCCATTCTCTGTAT+GGG | + | chr8.1:67596381-67596400 | MS.gene23633:CDS | 40.0% | |
| CAGGGGCCTTAATTATTTGT+AGG | - | chr8.1:67597206-67597225 | None:intergenic | 40.0% | |
| GATATGAATTGGTGGAGAGA+GGG | - | chr8.1:67596336-67596355 | None:intergenic | 40.0% | |
| GCAAAGAGGCTTGAAACATT+CGG | + | chr8.1:67598086-67598105 | MS.gene23633:CDS | 40.0% | |
| GGGGCCTTAATTATTTGTAG+GGG | - | chr8.1:67597204-67597223 | None:intergenic | 40.0% | |
| GTATAGACCCATACAGAGAA+TGG | - | chr8.1:67596391-67596410 | None:intergenic | 40.0% | |
| GTCATGTTGGCATTAGGAAA+AGG | + | chr8.1:67598257-67598276 | MS.gene23633:CDS | 40.0% | |
| GTGATTTAAACGACCAAACG+AGG | + | chr8.1:67598216-67598235 | MS.gene23633:CDS | 40.0% | |
| TGGAAGTTGTGAGAAGGATT+GGG | - | chr8.1:67596291-67596310 | None:intergenic | 40.0% | |
| TGTCAACACAGAAGTCATGT+TGG | + | chr8.1:67598244-67598263 | MS.gene23633:CDS | 40.0% | |
| TTGGCTTAGAAGTTGCAAAG+AGG | + | chr8.1:67598072-67598091 | MS.gene23633:CDS | 40.0% | |
| ! | ATTGTTGGTCTGGGAAGAAT+TGG | + | chr8.1:67598053-67598072 | MS.gene23633:CDS | 40.0% |
| ! | CTTTGTTGGTTGATGTTGGT+AGG | + | chr8.1:67596574-67596593 | MS.gene23633:CDS | 40.0% |
| ! | GGACCGTGAAAGAATACTTT+TGG | - | chr8.1:67596243-67596262 | None:intergenic | 40.0% |
| !! | AAATGGAGGAAGCATTGTGA+GGG | - | chr8.1:67596365-67596384 | None:intergenic | 40.0% |
| !!! | CGCTACTTTTTGTCTAATGG+AGG | - | chr8.1:67596774-67596793 | None:intergenic | 40.0% |
| !!! | GGATTTTCCACTTGGTTCTA+AGG | + | chr8.1:67596653-67596672 | MS.gene23633:CDS | 40.0% |
| ACATTGATCTCGACGAGTGT+CGG | + | chr8.1:67596484-67596503 | MS.gene23633:CDS | 45.0% | |
| ACCAACTTGAGCTAAGCTCT+TGG | + | chr8.1:67597846-67597865 | MS.gene23633:intron | 45.0% | |
| AGGGAGAAGGTGGAGAATTT+CGG | - | chr8.1:67596424-67596443 | None:intergenic | 45.0% | |
| AGTGGAAAATCCCAAGATGC+AGG | - | chr8.1:67596645-67596664 | None:intergenic | 45.0% | |
| AGTTGTGAGAAGGATTGGGT+TGG | - | chr8.1:67596287-67596306 | None:intergenic | 45.0% | |
| CACTGGAGGTCATGATGAAA+CGG | - | chr8.1:67596452-67596471 | None:intergenic | 45.0% | |
| CATTTCCGCCATTCTCTGTA+TGG | + | chr8.1:67596380-67596399 | MS.gene23633:CDS | 45.0% | |
| CTCTTGGAGACTTATTCTCG+GGG | + | chr8.1:67597862-67597881 | MS.gene23633:intron | 45.0% | |
| GAAGTTAAGACAGCTGCATG+AGG | - | chr8.1:67598443-67598462 | None:intergenic | 45.0% | |
| GCTCTTGGAGACTTATTCTC+GGG | + | chr8.1:67597861-67597880 | MS.gene23633:intron | 45.0% | |
| GGATATGAATTGGTGGAGAG+AGG | - | chr8.1:67596337-67596356 | None:intergenic | 45.0% | |
| GGCGGAATCATAGTGAATGT+TGG | + | chr8.1:67598278-67598297 | MS.gene23633:CDS | 45.0% | |
| TAGACCCATACAGAGAATGG+CGG | - | chr8.1:67596388-67596407 | None:intergenic | 45.0% | |
| TATGGGTATCTGCCAACTTG+TGG | + | chr8.1:67598472-67598491 | MS.gene23633:CDS | 45.0% | |
| TCATGATGAAACGGAGGCAA+GGG | - | chr8.1:67596443-67596462 | None:intergenic | 45.0% | |
| TCCAAGAGCTTAGCTCAAGT+TGG | - | chr8.1:67597850-67597869 | None:intergenic | 45.0% | |
| TGGTAGGAAAATTTCAGCGG+CGG | + | chr8.1:67596590-67596609 | MS.gene23633:CDS | 45.0% | |
| TGTTGACAATGTGCCTCGTT+TGG | - | chr8.1:67598232-67598251 | None:intergenic | 45.0% | |
| TTAAGGCCCCTGTAAATTGG+AGG | + | chr8.1:67597214-67597233 | MS.gene23633:intron | 45.0% | |
| TTCGGAGGATGTTGCTGATA+TGG | + | chr8.1:67596545-67596564 | MS.gene23633:CDS | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.1:67596663-67596682 | None:intergenic | 45.0% | |
| ! | AATGTGATTAGTTCCGGCAC+TGG | - | chr8.1:67596469-67596488 | None:intergenic | 45.0% |
| ! | CATACAGAGAATGGCGGAAA+TGG | - | chr8.1:67596382-67596401 | None:intergenic | 45.0% |
| ! | GAAAATGAGATTGGAGGTGC+TGG | + | chr8.1:67598347-67598366 | MS.gene23633:CDS | 45.0% |
| ! | GCATCTTGGGATTTTCCACT+TGG | + | chr8.1:67596645-67596664 | MS.gene23633:CDS | 45.0% |
| ! | TGTTGCAAGCTCTAACACAG+TGG | - | chr8.1:67598171-67598190 | None:intergenic | 45.0% |
| !! | GAAATGGAGGAAGCATTGTG+AGG | - | chr8.1:67596366-67596385 | None:intergenic | 45.0% |
| !! | GAGGGTTGGTGGATATGAAT+TGG | - | chr8.1:67596347-67596366 | None:intergenic | 45.0% |
| !! | GGATCGGTTTTTGAGAAGAC+AGG | + | chr8.1:67596611-67596630 | MS.gene23633:CDS | 45.0% |
| !! | GGTTGGTGGATATGAATTGG+TGG | - | chr8.1:67596344-67596363 | None:intergenic | 45.0% |
| !! | GTGGCTTTGTTGGTTGATGT+TGG | + | chr8.1:67596570-67596589 | MS.gene23633:CDS | 45.0% |
| !! | TATTTCCAGCATTGGCAACC+TGG | - | chr8.1:67596521-67596540 | None:intergenic | 45.0% |
| !! | TGATATGGCTGTGGCTTTGT+TGG | + | chr8.1:67596560-67596579 | MS.gene23633:CDS | 45.0% |
| !! | ATTGTAAAATATATTTAAAA+AGG | - | chr8.1:67597820-67597839 | None:intergenic | 5.0% |
| !!! | ATCATTAATTATTTTTATTA+GGG | - | chr8.1:67596987-67597006 | None:intergenic | 5.0% |
| !!! | TATCATTAATTATTTTTATT+AGG | - | chr8.1:67596988-67597007 | None:intergenic | 5.0% |
| AGACAGCTGCATGAGGTGAA+AGG | - | chr8.1:67598436-67598455 | None:intergenic | 50.0% | |
| AGCCGAGCCTCCAATTTACA+GGG | - | chr8.1:67597224-67597243 | None:intergenic | 50.0% | |
| CATGTACCAGAGCCATTCCT+TGG | - | chr8.1:67597268-67597287 | None:intergenic | 50.0% | |
| GGAAAATTTCAGCGGCGGAT+CGG | + | chr8.1:67596595-67596614 | MS.gene23633:CDS | 50.0% | |
| GGAGAGAGGGAAGAGAAGAT+GGG | - | chr8.1:67596323-67596342 | None:intergenic | 50.0% | |
| GGATGTTGCTGATATGGCTG+TGG | + | chr8.1:67596551-67596570 | MS.gene23633:CDS | 50.0% | |
| GTCATGATGAAACGGAGGCA+AGG | - | chr8.1:67596444-67596463 | None:intergenic | 50.0% | |
| TCCTTGCACATGCCAAGGAA+TGG | + | chr8.1:67597253-67597272 | MS.gene23633:intron | 50.0% | |
| TGGAGAGAGGGAAGAGAAGA+TGG | - | chr8.1:67596324-67596343 | None:intergenic | 50.0% | |
| TGGAGGTCATGATGAAACGG+AGG | - | chr8.1:67596449-67596468 | None:intergenic | 50.0% | |
| TTCATCATGACCTCCAGTGC+CGG | + | chr8.1:67596453-67596472 | MS.gene23633:CDS | 50.0% | |
| ! | ACAGAGAATGGCGGAAATGG+AGG | - | chr8.1:67596379-67596398 | None:intergenic | 50.0% |
| ! | GGAGAATTTCGGCGTTGAGA+GGG | - | chr8.1:67596413-67596432 | None:intergenic | 50.0% |
| ! | TGGAGAATTTCGGCGTTGAG+AGG | - | chr8.1:67596414-67596433 | None:intergenic | 50.0% |
| !! | AGGATTGGGTTGGAGGTATC+CGG | - | chr8.1:67596277-67596296 | None:intergenic | 50.0% |
| !! | TGAGATTGGAGGTGCTGGTT+TGG | + | chr8.1:67598352-67598371 | MS.gene23633:CDS | 50.0% |
| !! | TGTGAGAAGGATTGGGTTGG+AGG | - | chr8.1:67596284-67596303 | None:intergenic | 50.0% |
| !! | TTGGAGGTATCCGGGGAATT+CGG | - | chr8.1:67596268-67596287 | None:intergenic | 50.0% |
| AGAGCTCCTTGCACATGCCA+AGG | + | chr8.1:67597248-67597267 | MS.gene23633:intron | 55.0% | |
| AGGTTCAGTCGCCTGCATCT+TGG | + | chr8.1:67596631-67596650 | MS.gene23633:CDS | 55.0% | |
| CACATGCCAAGGAATGGCTC+TGG | + | chr8.1:67597259-67597278 | MS.gene23633:intron | 55.0% | |
| GAGCCGAGCCTCCAATTTAC+AGG | - | chr8.1:67597225-67597244 | None:intergenic | 55.0% | |
| GCCATTCCTTGGCATGTGCA+AGG | - | chr8.1:67597257-67597276 | None:intergenic | 55.0% | |
| GCCCCTGTAAATTGGAGGCT+CGG | + | chr8.1:67597219-67597238 | MS.gene23633:intron | 55.0% | |
| GCCGAGCCTCCAATTTACAG+GGG | - | chr8.1:67597223-67597242 | None:intergenic | 55.0% | |
| GGAATCCAGGTTGCCAATGC+TGG | + | chr8.1:67596513-67596532 | MS.gene23633:CDS | 55.0% | |
| GGCATGTGCAAGGAGCTCTA+CGG | - | chr8.1:67597247-67597266 | None:intergenic | 55.0% | |
| GGTTCAGTCGCCTGCATCTT+GGG | + | chr8.1:67596632-67596651 | MS.gene23633:CDS | 55.0% | |
| TGAAACGGAGGCAAGGGAGA+AGG | - | chr8.1:67596437-67596456 | None:intergenic | 55.0% | |
| ! | GTGATTAGTTCCGGCACTGG+AGG | - | chr8.1:67596466-67596485 | None:intergenic | 55.0% |
| !! | GATTGGGTTGGAGGTATCCG+GGG | - | chr8.1:67596275-67596294 | None:intergenic | 55.0% |
| !! | GGAAGCATTGTGAGGGTTGG+TGG | - | chr8.1:67596358-67596377 | None:intergenic | 55.0% |
| !! | GGAGGAAGCATTGTGAGGGT+TGG | - | chr8.1:67596361-67596380 | None:intergenic | 55.0% |
| !! | GGATTGGGTTGGAGGTATCC+GGG | - | chr8.1:67596276-67596295 | None:intergenic | 55.0% |
| !! | TGGAGGTATCCGGGGAATTC+GGG | - | chr8.1:67596267-67596286 | None:intergenic | 55.0% |
| AACGGAGGCAAGGGAGAAGG+TGG | - | chr8.1:67596434-67596453 | None:intergenic | 60.0% | |
| AGGTATCCGGGGAATTCGGG+TGG | - | chr8.1:67596264-67596283 | None:intergenic | 60.0% | |
| !! | ATCTCGACGAGTGTCGGCGA+CGG | + | chr8.1:67596490-67596509 | MS.gene23633:CDS | 60.0% |
| CACGGTCCACCCGAATTCCC+CGG | + | chr8.1:67596255-67596274 | MS.gene23633:CDS | 65.0% | |
| !! | TCTCGACGAGTGTCGGCGAC+GGG | + | chr8.1:67596491-67596510 | MS.gene23633:CDS | 65.0% |
| ! | GTGTCGGCGACGGGGAATCC+AGG | + | chr8.1:67596500-67596519 | MS.gene23633:CDS | 70.0% |
| !! | CTCGACGAGTGTCGGCGACG+GGG | + | chr8.1:67596492-67596511 | MS.gene23633:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 67596216 | 67598550 | 67596216 | ID=MS.gene23633 |
| chr8.1 | mRNA | 67596216 | 67598550 | 67596216 | ID=MS.gene23633.t1;Parent=MS.gene23633 |
| chr8.1 | exon | 67596216 | 67596674 | 67596216 | ID=MS.gene23633.t1.exon1;Parent=MS.gene23633.t1 |
| chr8.1 | CDS | 67596216 | 67596674 | 67596216 | ID=cds.MS.gene23633.t1;Parent=MS.gene23633.t1 |
| chr8.1 | exon | 67598032 | 67598550 | 67598032 | ID=MS.gene23633.t1.exon2;Parent=MS.gene23633.t1 |
| chr8.1 | CDS | 67598032 | 67598550 | 67598032 | ID=cds.MS.gene23633.t1;Parent=MS.gene23633.t1 |
| Gene Sequence |
| Protein sequence |
