Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24012.t1 | XP_013468406.1 | 83.9 | 355 | 34 | 3 | 1 | 332 | 94 | 448 | 1.60E-168 | 602.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24012.t1 | Q9FND4 | 54.3 | 363 | 134 | 4 | 2 | 332 | 96 | 458 | 1.7e-110 | 400.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24012.t1 | A0A072VM11 | 83.9 | 355 | 34 | 3 | 1 | 332 | 94 | 448 | 1.2e-168 | 602.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049435 | MS.gene24012 | 0.801222 | 9.97E-49 | -1.69E-46 |
MS.gene050750 | MS.gene24012 | 0.802692 | 4.97E-49 | -1.69E-46 |
MS.gene050953 | MS.gene24012 | 0.80412 | 2.52E-49 | -1.69E-46 |
MS.gene051198 | MS.gene24012 | 0.808502 | 3.00E-50 | -1.69E-46 |
MS.gene051368 | MS.gene24012 | 0.817889 | 2.61E-52 | -1.69E-46 |
MS.gene052954 | MS.gene24012 | 0.817065 | 4.00E-52 | -1.69E-46 |
MS.gene053080 | MS.gene24012 | 0.803248 | 3.82E-49 | -1.69E-46 |
MS.gene053188 | MS.gene24012 | 0.808002 | 3.84E-50 | -1.69E-46 |
MS.gene053216 | MS.gene24012 | 0.805196 | 1.50E-49 | -1.69E-46 |
MS.gene053931 | MS.gene24012 | 0.803337 | 3.66E-49 | -1.69E-46 |
MS.gene054537 | MS.gene24012 | 0.803162 | 3.98E-49 | -1.69E-46 |
MS.gene054657 | MS.gene24012 | 0.830325 | 3.13E-55 | -1.69E-46 |
MS.gene05510 | MS.gene24012 | 0.821668 | 3.57E-53 | -1.69E-46 |
MS.gene055701 | MS.gene24012 | 0.81197 | 5.36E-51 | -1.69E-46 |
MS.gene056506 | MS.gene24012 | 0.816379 | 5.70E-52 | -1.69E-46 |
MS.gene057060 | MS.gene24012 | 0.806318 | 8.72E-50 | -1.69E-46 |
MS.gene057869 | MS.gene24012 | 0.816758 | 4.69E-52 | -1.69E-46 |
MS.gene058548 | MS.gene24012 | 0.835901 | 1.28E-56 | -1.69E-46 |
MS.gene058595 | MS.gene24012 | 0.809171 | 2.16E-50 | -1.69E-46 |
MS.gene058979 | MS.gene24012 | 0.800699 | 1.28E-48 | -1.69E-46 |
MS.gene059317 | MS.gene24012 | 0.816131 | 6.48E-52 | -1.69E-46 |
MS.gene05954 | MS.gene24012 | 0.801668 | 8.08E-49 | -1.69E-46 |
MS.gene059569 | MS.gene24012 | 0.810946 | 8.95E-51 | -1.69E-46 |
MS.gene05979 | MS.gene24012 | 0.823882 | 1.09E-53 | -1.69E-46 |
MS.gene059842 | MS.gene24012 | 0.806877 | 6.65E-50 | -1.69E-46 |
MS.gene060310 | MS.gene24012 | 0.832689 | 8.19E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24012.t1 | MTR_1g069345 | 88.451 | 355 | 18 | 3 | 1 | 332 | 94 | 448 | 0.0 | 638 |
MS.gene24012.t1 | MTR_3g449990 | 39.143 | 350 | 180 | 6 | 14 | 332 | 153 | 500 | 2.22e-77 | 248 |
MS.gene24012.t1 | MTR_5g090420 | 39.437 | 355 | 187 | 5 | 3 | 332 | 142 | 493 | 3.13e-76 | 244 |
MS.gene24012.t1 | MTR_1g072140 | 26.009 | 223 | 146 | 7 | 123 | 332 | 40 | 256 | 1.31e-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24012.t1 | AT5G43920 | 58.127 | 363 | 120 | 4 | 2 | 332 | 96 | 458 | 8.89e-150 | 432 |
MS.gene24012.t1 | AT5G08560 | 39.118 | 363 | 186 | 5 | 3 | 332 | 144 | 504 | 7.64e-85 | 267 |
MS.gene24012.t1 | AT5G08560 | 39.118 | 363 | 186 | 5 | 3 | 332 | 144 | 504 | 7.64e-85 | 267 |
MS.gene24012.t1 | AT5G08560 | 39.118 | 363 | 186 | 5 | 3 | 332 | 144 | 504 | 7.64e-85 | 267 |
MS.gene24012.t1 | AT3G49660 | 28.571 | 217 | 133 | 10 | 125 | 324 | 39 | 250 | 7.26e-12 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATATACACATTTATATA+TGG | - | 10890:3687-3706 | MS.gene24012:intron | 10.0% |
!! | TAATATACACATTTATATAT+GGG | - | 10890:3688-3707 | MS.gene24012:intron | 10.0% |
!! | AAAAAGAAAGACAATTATAT+TGG | + | 10890:3503-3522 | None:intergenic | 15.0% |
!! | TATTATTGGATAAAGAAATT+CGG | - | 10890:6108-6127 | MS.gene24012:CDS | 15.0% |
!! | TTGTACAAAAGTAATTTATT+TGG | - | 10890:2371-2390 | MS.gene24012:CDS | 15.0% |
!! | TTTATATATTAAACTTCTTC+CGG | - | 10890:5378-5397 | MS.gene24012:intron | 15.0% |
!!! | ATATATGTTTTGATATCTTT+CGG | - | 10890:5461-5480 | MS.gene24012:intron | 15.0% |
!!! | ATTCCATAATTTTTCTTAAA+CGG | + | 10890:2588-2607 | None:intergenic | 15.0% |
!!! | TAATAAAAAGTTCACATTTT+AGG | - | 10890:3930-3949 | MS.gene24012:intron | 15.0% |
!!! | TTTATTTTTCTTACGTAATA+AGG | - | 10890:3019-3038 | MS.gene24012:intron | 15.0% |
!! | AACTTAAAAATTCGTTGAAT+TGG | + | 10890:5250-5269 | None:intergenic | 20.0% |
!! | AGAAAAATAAATCACTCTTA+CGG | + | 10890:3010-3029 | None:intergenic | 20.0% |
!! | AGTGAATGAATAAATAATGA+TGG | - | 10890:4539-4558 | MS.gene24012:intron | 20.0% |
!! | ATAATTAATATCTTGCCATA+TGG | + | 10890:3178-3197 | None:intergenic | 20.0% |
!! | ATATCGAAAGATAAAAGAAT+AGG | - | 10890:4190-4209 | MS.gene24012:intron | 20.0% |
!! | ATCATTATATACCATAGAAA+GGG | - | 10890:2876-2895 | MS.gene24012:intron | 20.0% |
!! | TAAAAACTAGAAGATTAACT+TGG | + | 10890:3263-3282 | None:intergenic | 20.0% |
!! | TACAGACATAATATTAGAAA+AGG | + | 10890:2753-2772 | None:intergenic | 20.0% |
!! | TTATAGAATACAGAAATCAT+TGG | + | 10890:2549-2568 | None:intergenic | 20.0% |
!!! | AATGTGAACTTTTTATTACA+CGG | + | 10890:3928-3947 | None:intergenic | 20.0% |
!!! | ATAATTGTCTTTCTTTTTCT+TGG | - | 10890:3505-3524 | MS.gene24012:intron | 20.0% |
!!! | ATCATTGGTTAAATGAAATA+TGG | + | 10890:2534-2553 | None:intergenic | 20.0% |
!!! | GGCAAGATATTAATTATTTT+GGG | - | 10890:3181-3200 | MS.gene24012:intron | 20.0% |
!!! | TGGCAAGATATTAATTATTT+TGG | - | 10890:3180-3199 | MS.gene24012:intron | 20.0% |
!!! | TTCCATAATTTTTCTTAAAC+GGG | + | 10890:2587-2606 | None:intergenic | 20.0% |
!!! | TTTTCTAGTTTATACACAAT+TGG | + | 10890:2934-2953 | None:intergenic | 20.0% |
! | AAGAAAAATTATGGAATCAC+TGG | - | 10890:2591-2610 | MS.gene24012:intron | 25.0% |
! | ACTAATTCCTTTAACTAGTA+TGG | - | 10890:3659-3678 | MS.gene24012:intron | 25.0% |
! | ATCCATTATATGTTATTCCA+AGG | + | 10890:4101-4120 | None:intergenic | 25.0% |
! | ATTAGATGTTATTGCTATCA+TGG | - | 10890:4225-4244 | MS.gene24012:intron | 25.0% |
! | CATCATTATATACCATAGAA+AGG | - | 10890:2875-2894 | MS.gene24012:intron | 25.0% |
! | CTAATTCCTTTAACTAGTAT+GGG | - | 10890:3660-3679 | MS.gene24012:intron | 25.0% |
! | CTGTAAAAATAAAGGATAGT+TGG | - | 10890:4051-4070 | MS.gene24012:intron | 25.0% |
! | GAAATAAAATCTAAGCTCTA+AGG | + | 10890:2826-2845 | None:intergenic | 25.0% |
! | GAATTAGTTAAGGAAACAAA+AGG | - | 10890:4322-4341 | MS.gene24012:intron | 25.0% |
! | GTATCTAATCAGCATATTAT+TGG | - | 10890:6094-6113 | MS.gene24012:CDS | 25.0% |
! | TAAAGAATCTTTGTTCTTGT+TGG | - | 10890:2793-2812 | MS.gene24012:intron | 25.0% |
! | TAATAGATCAATTCTGTAGA+GGG | + | 10890:3152-3171 | None:intergenic | 25.0% |
! | TCATTATATACCATAGAAAG+GGG | - | 10890:2877-2896 | MS.gene24012:intron | 25.0% |
! | TCTACAGAATTGATCTATTA+GGG | - | 10890:3152-3171 | MS.gene24012:intron | 25.0% |
! | TTCCTTGGAATAACATATAA+TGG | - | 10890:4096-4115 | MS.gene24012:intron | 25.0% |
! | TTTCGATATTACCTTGTAAA+TGG | + | 10890:4179-4198 | None:intergenic | 25.0% |
!! | AGAAATTCGGATTTTACATT+TGG | - | 10890:6121-6140 | MS.gene24012:CDS | 25.0% |
!! | ATTATGTCTGTATGTTTTGT+CGG | - | 10890:2761-2780 | MS.gene24012:intron | 25.0% |
!! | TTTGTTCAGTTTTCTAATAG+TGG | - | 10890:3373-3392 | MS.gene24012:intron | 25.0% |
!! | TTTTTCTGTGTTTGCTTATT+GGG | - | 10890:2723-2742 | MS.gene24012:intron | 25.0% |
!!! | CAACTATCCTTTATTTTTAC+AGG | + | 10890:4053-4072 | None:intergenic | 25.0% |
!!! | TATGGAAGGTATTATGTTAT+TGG | - | 10890:3438-3457 | MS.gene24012:intron | 25.0% |
!!! | TTTTTTCTGTGTTTGCTTAT+TGG | - | 10890:2722-2741 | MS.gene24012:intron | 25.0% |
AAACTGAGTTATGTTGGTAT+TGG | - | 10890:2627-2646 | MS.gene24012:intron | 30.0% | |
AAATGCAAACTGAGTTATGT+TGG | - | 10890:2621-2640 | MS.gene24012:intron | 30.0% | |
AACAGTAAGATCTACAACTT+TGG | + | 10890:6060-6079 | None:intergenic | 30.0% | |
AACAGTGCAAATATGTGATT+AGG | - | 10890:6303-6322 | MS.gene24012:CDS | 30.0% | |
AAGTAAGGAAAATGCTAACA+AGG | + | 10890:4456-4475 | None:intergenic | 30.0% | |
AATATGGATGAGCATTACAT+TGG | + | 10890:2518-2537 | None:intergenic | 30.0% | |
AATATGTATGGGAACGTTAT+AGG | - | 10890:4143-4162 | MS.gene24012:intron | 30.0% | |
ACAGTAAGATCTACAACTTT+GGG | + | 10890:6059-6078 | None:intergenic | 30.0% | |
ACCCTAGAAAATAGAAACAA+TGG | + | 10890:4988-5007 | None:intergenic | 30.0% | |
AGTAAGGAAAATGCTAACAA+GGG | + | 10890:4455-4474 | None:intergenic | 30.0% | |
ATGATTGTACAGCTATCATA+TGG | - | 10890:3420-3439 | MS.gene24012:intron | 30.0% | |
CAAATGTGGTAAATTGGTAA+TGG | - | 10890:5677-5696 | MS.gene24012:intron | 30.0% | |
CACAAGGCTGTATTTATAAT+AGG | + | 10890:5202-5221 | None:intergenic | 30.0% | |
CACTACATTATGTTGTAATG+AGG | + | 10890:4523-4542 | None:intergenic | 30.0% | |
CATGAGTATTTCAGAACATT+AGG | + | 10890:5722-5741 | None:intergenic | 30.0% | |
CCCTAGAAAATAGAAACAAT+GGG | + | 10890:4987-5006 | None:intergenic | 30.0% | |
CCTAGAAAATAGAAACAATG+GGG | + | 10890:4986-5005 | None:intergenic | 30.0% | |
CTAATAGATCAATTCTGTAG+AGG | + | 10890:3153-3172 | None:intergenic | 30.0% | |
CTAGAAAATAGAAACAATGG+GGG | + | 10890:4985-5004 | None:intergenic | 30.0% | |
CTCTACAGAATTGATCTATT+AGG | - | 10890:3151-3170 | MS.gene24012:intron | 30.0% | |
CTGGACATAAAAATGAAGTT+TGG | - | 10890:3350-3369 | MS.gene24012:intron | 30.0% | |
GACATAATATTAGAAAAGGC+AGG | + | 10890:2749-2768 | None:intergenic | 30.0% | |
GATTGTTTAACTGAGAATTG+TGG | - | 10890:2335-2354 | MS.gene24012:CDS | 30.0% | |
GGTTAGGTGTTAATATGTAT+GGG | - | 10890:4132-4151 | MS.gene24012:intron | 30.0% | |
GTCCCGTTTAAGAAAAATTA+TGG | - | 10890:2582-2601 | MS.gene24012:intron | 30.0% | |
TATGATAGCTGTACAATCAT+TGG | + | 10890:3420-3439 | None:intergenic | 30.0% | |
TCAAACTATCAAACATCTTG+TGG | + | 10890:5493-5512 | None:intergenic | 30.0% | |
TCAATTCCAAATCTTGAGAT+TGG | + | 10890:4645-4664 | None:intergenic | 30.0% | |
TCACTTATATGATGCAGATA+AGG | + | 10890:5112-5131 | None:intergenic | 30.0% | |
TCATCAGAGTTACTAAAAGA+CGG | + | 10890:2653-2672 | None:intergenic | 30.0% | |
TCTGCATCATATAAGTGATT+AGG | - | 10890:5114-5133 | MS.gene24012:intron | 30.0% | |
TGGTCAATTTGAATGATGAT+GGG | - | 10890:2052-2071 | MS.gene24012:CDS | 30.0% | |
TGGTTAGGTGTTAATATGTA+TGG | - | 10890:4131-4150 | MS.gene24012:intron | 30.0% | |
TTCTTTGCATAAGTGATTGA+TGG | - | 10890:2396-2415 | MS.gene24012:CDS | 30.0% | |
TTTATGACCTGAAGACAAAA+AGG | - | 10890:4006-4025 | MS.gene24012:intron | 30.0% | |
TTTGTGCGATAAAAGTTATC+TGG | - | 10890:5353-5372 | MS.gene24012:intron | 30.0% | |
! | CTACGAAAATAGTTTGTATC+AGG | - | 10890:5308-5327 | MS.gene24012:intron | 30.0% |
! | TATTTTCGTAGAATCAGACT+TGG | + | 10890:5299-5318 | None:intergenic | 30.0% |
! | TCAAGATTTGGAATTGATCA+AGG | - | 10890:4648-4667 | MS.gene24012:intron | 30.0% |
! | TGTTTTGTACATCTTTTCCT+TGG | - | 10890:3725-3744 | MS.gene24012:intron | 30.0% |
!! | CTTATTAAGCTTTAGCTTGA+GGG | - | 10890:5036-5055 | MS.gene24012:intron | 30.0% |
!! | GTGTATCTTAAGAGTTTTGT+AGG | - | 10890:3983-4002 | MS.gene24012:intron | 30.0% |
!! | TATAATGGATGTCTCTTGTT+TGG | - | 10890:4111-4130 | MS.gene24012:intron | 30.0% |
!! | TTATTAAGCTTTAGCTTGAG+GGG | - | 10890:5037-5056 | MS.gene24012:intron | 30.0% |
!!! | CACTACAAGAAGGTTTTTTT+TGG | + | 10890:5414-5433 | None:intergenic | 30.0% |
!!! | CCCATTGTTTCTATTTTCTA+GGG | - | 10890:4984-5003 | MS.gene24012:intron | 30.0% |
!!! | TTTTAAGTTTGTCATGAGAC+TGG | - | 10890:5261-5280 | MS.gene24012:intron | 30.0% |
!!! | TTTTTTTGGTACCATATCAC+CGG | + | 10890:5400-5419 | None:intergenic | 30.0% |
AAACCGAAATGGATGTGATA+GGG | + | 10890:6181-6200 | None:intergenic | 35.0% | |
AAATGCGAGAAACATATGGA+TGG | + | 10890:3064-3083 | None:intergenic | 35.0% | |
AACTCAACACAATTTGTGTG+CGG | - | 10890:5953-5972 | MS.gene24012:intron | 35.0% | |
AAGCATACATTTGGGAATGA+TGG | - | 10890:5899-5918 | MS.gene24012:intron | 35.0% | |
AAGTTCTACATGACTAGTGA+TGG | - | 10890:3769-3788 | MS.gene24012:intron | 35.0% | |
AATGCAATTTCCCCTTTCTA+TGG | + | 10890:2890-2909 | None:intergenic | 35.0% | |
AATTGGACACTGTAAGAAGA+TGG | + | 10890:2917-2936 | None:intergenic | 35.0% | |
ACAACTATCACATTCACCTT+TGG | - | 10890:4885-4904 | MS.gene24012:CDS | 35.0% | |
ACCACTAGATTGAGATAGTT+TGG | + | 10890:5585-5604 | None:intergenic | 35.0% | |
ACGTAAATGCGAGAAACATA+TGG | + | 10890:3068-3087 | None:intergenic | 35.0% | |
AGTACAATTGACCAGTTGAA+AGG | + | 10890:4737-4756 | None:intergenic | 35.0% | |
AGTTCTACATGACTAGTGAT+GGG | - | 10890:3770-3789 | MS.gene24012:intron | 35.0% | |
ATCATGCCCATACTAGTTAA+AGG | + | 10890:3669-3688 | None:intergenic | 35.0% | |
ATGTTATTGCTATCATGGAG+AGG | - | 10890:4230-4249 | MS.gene24012:intron | 35.0% | |
ATTGATCTATTAGGGCCATA+TGG | - | 10890:3160-3179 | MS.gene24012:intron | 35.0% | |
CAACTCATAATTCCTTAGAG+GGG | - | 10890:4278-4297 | MS.gene24012:intron | 35.0% | |
CAAGCTCAAATGTGGTAAAT+TGG | - | 10890:5671-5690 | MS.gene24012:intron | 35.0% | |
CAATTTACCACATTTGAGCT+TGG | + | 10890:5673-5692 | None:intergenic | 35.0% | |
CACACAAATTGTGTTGAGTT+GGG | + | 10890:5953-5972 | None:intergenic | 35.0% | |
CAGTAAGATCTACAACTTTG+GGG | + | 10890:6058-6077 | None:intergenic | 35.0% | |
CATCAAGTTCTCTTTCTTGT+TGG | - | 10890:4795-4814 | MS.gene24012:intron | 35.0% | |
CCAACTCATAATTCCTTAGA+GGG | - | 10890:4277-4296 | MS.gene24012:intron | 35.0% | |
CCAGTAACTAGGTTTAAGTA+AGG | + | 10890:4471-4490 | None:intergenic | 35.0% | |
CCTTACTTAAACCTAGTTAC+TGG | - | 10890:4468-4487 | MS.gene24012:intron | 35.0% | |
CTTACATGATATTTGAGGAG+AGG | + | 10890:3905-3924 | None:intergenic | 35.0% | |
CTTTATGAGGATCATTCTTG+TGG | - | 10890:2231-2250 | MS.gene24012:intron | 35.0% | |
GAGTGTGCCTGTAAAAATAA+AGG | - | 10890:4043-4062 | MS.gene24012:intron | 35.0% | |
GCTAACATATCACTACAAGA+AGG | + | 10890:5424-5443 | None:intergenic | 35.0% | |
GCTCATAATGTACAGGAATA+TGG | + | 10890:3096-3115 | None:intergenic | 35.0% | |
GTAAGGAAAATGCTAACAAG+GGG | + | 10890:4454-4473 | None:intergenic | 35.0% | |
GTACAATTGACCAGTTGAAA+GGG | + | 10890:4736-4755 | None:intergenic | 35.0% | |
GTGGTCAATTTGAATGATGA+TGG | - | 10890:2051-2070 | MS.gene24012:CDS | 35.0% | |
GTTTATACAACTTGTCAGAC+AGG | - | 10890:5603-5622 | MS.gene24012:intron | 35.0% | |
TACAATATGCCGAACAAGAA+TGG | - | 10890:3563-3582 | MS.gene24012:intron | 35.0% | |
TACAGGTTGTAGTGAATAAC+TGG | + | 10890:3617-3636 | None:intergenic | 35.0% | |
TACTTAAACCTAGTTACTGG+AGG | - | 10890:4471-4490 | MS.gene24012:intron | 35.0% | |
TAGTCATGTAGAACTTGACA+AGG | + | 10890:3765-3784 | None:intergenic | 35.0% | |
TCATAGTTTGGCTAATAGTG+TGG | - | 10890:2032-2051 | MS.gene24012:CDS | 35.0% | |
TCTACATGCTCATAATGTAC+AGG | + | 10890:3103-3122 | None:intergenic | 35.0% | |
TGAAACTACTGTAACTGCTT+GGG | - | 10890:2167-2186 | MS.gene24012:CDS | 35.0% | |
TGTCATGTCAATATGTGTGT+GGG | - | 10890:4689-4708 | MS.gene24012:intron | 35.0% | |
TGTCTAAATCAGATCACACA+AGG | + | 10890:5218-5237 | None:intergenic | 35.0% | |
TTAAACTTCTTCCGGTGATA+TGG | - | 10890:5386-5405 | MS.gene24012:intron | 35.0% | |
TTATGTTGTAATGAGGACTC+TGG | + | 10890:4516-4535 | None:intergenic | 35.0% | |
TTGAAACTACTGTAACTGCT+TGG | - | 10890:2166-2185 | MS.gene24012:CDS | 35.0% | |
TTGCCAATTCCATTCTTGTT+CGG | + | 10890:3575-3594 | None:intergenic | 35.0% | |
TTGTACAGCTATCATATGGA+AGG | - | 10890:3424-3443 | MS.gene24012:intron | 35.0% | |
TTTACATTTGGCAACCAATG+CGG | - | 10890:6133-6152 | MS.gene24012:CDS | 35.0% | |
TTTCCTTAACTAATTCCCCT+GGG | + | 10890:4318-4337 | None:intergenic | 35.0% | |
TTTCTATAGCTTCCTTTGTG+AGG | - | 10890:2842-2861 | MS.gene24012:intron | 35.0% | |
! | AGTCTTTCCTTTTTGTCTTC+AGG | + | 10890:4016-4035 | None:intergenic | 35.0% |
! | CCTCTAAGGAATTATGAGTT+GGG | + | 10890:4279-4298 | None:intergenic | 35.0% |
! | GATTTGGAATTGATCAAGGA+TGG | - | 10890:4652-4671 | MS.gene24012:intron | 35.0% |
! | GGTCAATTTGAATGATGATG+GGG | - | 10890:2053-2072 | MS.gene24012:CDS | 35.0% |
! | GTTCAGTTTTCTAATAGTGG+AGG | - | 10890:3376-3395 | MS.gene24012:intron | 35.0% |
! | GTTTGATAGTTTGACTGTCA+AGG | - | 10890:5499-5518 | MS.gene24012:intron | 35.0% |
! | TATGTGATTAGGTCCTGTTT+TGG | - | 10890:6314-6333 | MS.gene24012:CDS | 35.0% |
! | TCGGTTTAAGGTTCATAGTT+TGG | - | 10890:2020-2039 | MS.gene24012:CDS | 35.0% |
! | TCTTTGTTCTTGTTGGTTAG+AGG | - | 10890:2800-2819 | MS.gene24012:intron | 35.0% |
! | TTTGTACATCTTTTCCTTGG+TGG | - | 10890:3728-3747 | MS.gene24012:intron | 35.0% |
!! | AATTTGAATGATGATGGGGA+TGG | - | 10890:2057-2076 | MS.gene24012:CDS | 35.0% |
!! | GCTTATTAAGCTTTAGCTTG+AGG | - | 10890:5035-5054 | MS.gene24012:intron | 35.0% |
!! | TGTTCTGAAATACTCATGAC+AGG | - | 10890:5724-5743 | MS.gene24012:intron | 35.0% |
!!! | CCCCATTGTTTCTATTTTCT+AGG | - | 10890:4983-5002 | MS.gene24012:intron | 35.0% |
AAAATCATGCCATGCACTAC+AGG | + | 10890:3634-3653 | None:intergenic | 40.0% | |
ACATTGAAACACACACTCAG+CGG | - | 10890:5767-5786 | MS.gene24012:intron | 40.0% | |
ACTATCTGATCCACCAAAAC+AGG | + | 10890:6330-6349 | None:intergenic | 40.0% | |
AGGAATTAATGACACCACCA+AGG | + | 10890:3745-3764 | None:intergenic | 40.0% | |
ATGCCGAACAAGAATGGAAT+TGG | - | 10890:3569-3588 | MS.gene24012:intron | 40.0% | |
ATGGAAACGAACTAAGAGCA+TGG | - | 10890:6017-6036 | MS.gene24012:CDS | 40.0% | |
CACGGCTTACATGATATTTG+AGG | + | 10890:3910-3929 | None:intergenic | 40.0% | |
CCAACAATCATCGCATATTG+AGG | + | 10890:4614-4633 | None:intergenic | 40.0% | |
CCCAACTCATAATTCCTTAG+AGG | - | 10890:4276-4295 | MS.gene24012:intron | 40.0% | |
CCTCAATATGCGATGATTGT+TGG | - | 10890:4611-4630 | MS.gene24012:intron | 40.0% | |
CTGCTGAGCTATTAAAAGTC+GGG | - | 10890:3836-3855 | MS.gene24012:intron | 40.0% | |
CTGTCATGTCAATATGTGTG+TGG | - | 10890:4688-4707 | MS.gene24012:intron | 40.0% | |
GAAACCGAAATGGATGTGAT+AGG | + | 10890:6182-6201 | None:intergenic | 40.0% | |
GAATCCTGTTTCGCTTTATG+AGG | - | 10890:2218-2237 | MS.gene24012:intron | 40.0% | |
GATAGTTTGACTGTCAAGGA+AGG | - | 10890:5503-5522 | MS.gene24012:intron | 40.0% | |
GATCTTACTGTTACTCCAGA+CGG | - | 10890:6068-6087 | MS.gene24012:CDS | 40.0% | |
GATGTTAGGGTCCATTTACA+AGG | - | 10890:4165-4184 | MS.gene24012:intron | 40.0% | |
GCACACAAATTGTGTTGAGT+TGG | + | 10890:5954-5973 | None:intergenic | 40.0% | |
GCACATGCAAGCATACATTT+GGG | - | 10890:5891-5910 | MS.gene24012:intron | 40.0% | |
GCCAAACTATCTCAATCTAG+TGG | - | 10890:5581-5600 | MS.gene24012:intron | 40.0% | |
GCTGCTGAGCTATTAAAAGT+CGG | - | 10890:3835-3854 | MS.gene24012:intron | 40.0% | |
GGGAACGTTATAGGATGTTA+GGG | - | 10890:4152-4171 | MS.gene24012:intron | 40.0% | |
GTTTCCTTAACTAATTCCCC+TGG | + | 10890:4319-4338 | None:intergenic | 40.0% | |
TATCTTGTCTGGAAGTTCCT+TGG | - | 10890:4081-4100 | MS.gene24012:intron | 40.0% | |
TCAAGGATGGAAATAGAAGC+AGG | - | 10890:4665-4684 | MS.gene24012:intron | 40.0% | |
TGACTGTAGCAAAGATGGTT+GGG | + | 10890:4925-4944 | None:intergenic | 40.0% | |
TGATCCTCATAAAGCGAAAC+AGG | + | 10890:2225-2244 | None:intergenic | 40.0% | |
TGATGGGGATGGTGATTTAA+GGG | - | 10890:2068-2087 | MS.gene24012:CDS | 40.0% | |
TGCTGAGCTATTAAAAGTCG+GGG | - | 10890:3837-3856 | MS.gene24012:intron | 40.0% | |
TGGGAACGTTATAGGATGTT+AGG | - | 10890:4151-4170 | MS.gene24012:intron | 40.0% | |
TGTCAGAGAATAGATCTCAC+CGG | + | 10890:4868-4887 | None:intergenic | 40.0% | |
TGTGAAGCTAATCCTCACAA+AGG | + | 10890:2857-2876 | None:intergenic | 40.0% | |
TTATGCTCCAAGCTCAAATG+TGG | - | 10890:5663-5682 | MS.gene24012:intron | 40.0% | |
TTGGAGCTCATTATCTTGTC+TGG | - | 10890:4070-4089 | MS.gene24012:intron | 40.0% | |
TTTAAGGGGGAAGTTGTTGA+TGG | - | 10890:2083-2102 | MS.gene24012:CDS | 40.0% | |
! | AGAATTGTGGCATGCTGTTT+AGG | - | 10890:2348-2367 | MS.gene24012:CDS | 40.0% |
! | ATGATGGGGATGGTGATTTA+AGG | - | 10890:2067-2086 | MS.gene24012:CDS | 40.0% |
! | CCCTCTAAGGAATTATGAGT+TGG | + | 10890:4280-4299 | None:intergenic | 40.0% |
! | GTTATGGAGTATTTGAAGCG+TGG | - | 10890:1940-1959 | MS.gene24012:CDS | 40.0% |
! | TAGTGATGGGAAAGTCTTTC+AGG | - | 10890:3783-3802 | MS.gene24012:intron | 40.0% |
! | TCAACGTGCTGTATCTTTTG+TGG | - | 10890:5793-5812 | MS.gene24012:intron | 40.0% |
! | TGGATGTCTCTTGTTTGGTT+AGG | - | 10890:4116-4135 | MS.gene24012:intron | 40.0% |
!! | AAGCTTTAAGCCTGTCACAA+TGG | + | 10890:5019-5038 | None:intergenic | 40.0% |
!! | ACATTTTAGGAGACTTGTCC+TGG | - | 10890:3943-3962 | MS.gene24012:intron | 40.0% |
!! | AGCTTTAAGCCTGTCACAAT+GGG | + | 10890:5018-5037 | None:intergenic | 40.0% |
!! | CATTTTAGGAGACTTGTCCT+GGG | - | 10890:3944-3963 | MS.gene24012:intron | 40.0% |
!! | GTTTAGCTTTGGATGTGTTG+AGG | - | 10890:1971-1990 | MS.gene24012:CDS | 40.0% |
!!! | ACATGGAAGTTTTGAAGCTG+TGG | - | 10890:5855-5874 | MS.gene24012:intron | 40.0% |
!!! | CATGGAAGTTTTGAAGCTGT+GGG | - | 10890:5856-5875 | MS.gene24012:intron | 40.0% |
AAGAAGCCACTGAGGTATAC+TGG | - | 10890:6275-6294 | MS.gene24012:CDS | 45.0% | |
AAGCTGTGGGATGTTGAAAC+TGG | - | 10890:5869-5888 | MS.gene24012:intron | 45.0% | |
ACACCAAGTTGCTCACTTGT+GGG | - | 10890:5831-5850 | MS.gene24012:intron | 45.0% | |
ACCAGTTGAAAGGGAATGAC+AGG | + | 10890:4727-4746 | None:intergenic | 45.0% | |
ACCATCAGCAGAAACCGAAA+TGG | + | 10890:6192-6211 | None:intergenic | 45.0% | |
AGAATAGATCTCACCGGAGA+AGG | + | 10890:4862-4881 | None:intergenic | 45.0% | |
ATATGCGATGATTGTTGGCC+TGG | - | 10890:4616-4635 | MS.gene24012:intron | 45.0% | |
ATCTGCATGTGGGATTGTGA+TGG | - | 10890:5998-6017 | MS.gene24012:intron | 45.0% | |
ATCTTTGCTACAGTCACCTC+CGG | - | 10890:4929-4948 | MS.gene24012:intron | 45.0% | |
ATGCCCAGGGGAATTAGTTA+AGG | - | 10890:4312-4331 | MS.gene24012:intron | 45.0% | |
ATGGAAAGTTGTAGCACAGC+CGG | + | 10890:4951-4970 | None:intergenic | 45.0% | |
ATGGGGATGGTGATTTAAGG+GGG | - | 10890:2070-2089 | MS.gene24012:CDS | 45.0% | |
CATGACAGGTGCAAGAAGAT+GGG | - | 10890:5738-5757 | MS.gene24012:intron | 45.0% | |
CATTGAAACACACACTCAGC+GGG | - | 10890:5768-5787 | MS.gene24012:intron | 45.0% | |
CATTGTCAATCTGAACAGCC+AGG | - | 10890:6220-6239 | MS.gene24012:CDS | 45.0% | |
CCAGTTGAAAGGGAATGACA+GGG | + | 10890:4726-4745 | None:intergenic | 45.0% | |
CTGATTAGATACTCTCCGTC+TGG | + | 10890:6086-6105 | None:intergenic | 45.0% | |
GATGGGGATGGTGATTTAAG+GGG | - | 10890:2069-2088 | MS.gene24012:CDS | 45.0% | |
GCACCCTATCACATCCATTT+CGG | - | 10890:6175-6194 | MS.gene24012:CDS | 45.0% | |
GGCACATGCAAGCATACATT+TGG | - | 10890:5890-5909 | MS.gene24012:intron | 45.0% | |
GTAGTGAACCTCCAGTAACT+AGG | + | 10890:4482-4501 | None:intergenic | 45.0% | |
GTGACTGTAGCAAAGATGGT+TGG | + | 10890:4926-4945 | None:intergenic | 45.0% | |
GTTTCCTACTACAACCACTC+AGG | - | 10890:2263-2282 | MS.gene24012:CDS | 45.0% | |
TACTACAACCACTCAGGTGT+GGG | - | 10890:2269-2288 | MS.gene24012:CDS | 45.0% | |
TCACTACAACCTGTAGTGCA+TGG | - | 10890:3622-3641 | MS.gene24012:intron | 45.0% | |
TCATGACAGGTGCAAGAAGA+TGG | - | 10890:5737-5756 | MS.gene24012:intron | 45.0% | |
TCCATTTCGGTTTCTGCTGA+TGG | - | 10890:6188-6207 | MS.gene24012:CDS | 45.0% | |
TGAAATGACTCGTTCCGCAT+TGG | + | 10890:6150-6169 | None:intergenic | 45.0% | |
TGGCAGCCAATCTCAAGATT+TGG | - | 10890:4636-4655 | MS.gene24012:intron | 45.0% | |
TTGTAATGAGGACTCTGGCA+AGG | + | 10890:4511-4530 | None:intergenic | 45.0% | |
TTGTGACCAGTATACCTCAG+TGG | + | 10890:6284-6303 | None:intergenic | 45.0% | |
TTTAAGCCTGTCACAATGGG+AGG | + | 10890:5015-5034 | None:intergenic | 45.0% | |
TTTCCTTAACTAGTGCCCCA+GGG | - | 10890:4427-4446 | MS.gene24012:intron | 45.0% | |
! | AAATCTTGAGATTGGCTGCC+AGG | + | 10890:4637-4656 | None:intergenic | 45.0% |
! | AACGAACTAAGAGCATGGAG+AGG | - | 10890:6022-6041 | MS.gene24012:CDS | 45.0% |
! | ACATGCAGATGCCCTTTTCA+GGG | + | 10890:5988-6007 | None:intergenic | 45.0% |
! | CCATCCGGTATTGAAATCGA+CGG | + | 10890:2129-2148 | None:intergenic | 45.0% |
! | GTGCTGTATCTTTTGTGGCA+TGG | - | 10890:5798-5817 | MS.gene24012:intron | 45.0% |
! | TAAGAGCATGGAGAGGAATG+AGG | - | 10890:6029-6048 | MS.gene24012:CDS | 45.0% |
! | TATTTGAAGCGTGGTGAGGA+TGG | - | 10890:1949-1968 | MS.gene24012:CDS | 45.0% |
! | TGGTGAGGATGGTTTAGCTT+TGG | - | 10890:1960-1979 | MS.gene24012:CDS | 45.0% |
!! | CATTCACCTTTGGAATCCTC+CGG | - | 10890:4895-4914 | MS.gene24012:CDS | 45.0% |
!! | CGTCGATTTCAATACCGGAT+GGG | - | 10890:2127-2146 | MS.gene24012:CDS | 45.0% |
!! | GGCAGTTTTGACCCTGAAAA+GGG | - | 10890:5974-5993 | MS.gene24012:intron | 45.0% |
!! | GGGGAAGTTGTTGATGGATT+TGG | - | 10890:2089-2108 | MS.gene24012:CDS | 45.0% |
!! | GTGATTAGGTCCTGTTTTGG+TGG | - | 10890:6317-6336 | MS.gene24012:CDS | 45.0% |
!! | TCTGTATGTTTTGTCGGCTG+AGG | - | 10890:2767-2786 | MS.gene24012:intron | 45.0% |
!! | TGAAAAGGGCATCTGCATGT+GGG | - | 10890:5988-6007 | MS.gene24012:intron | 45.0% |
!! | TTGTGTTGAGTTGGGAAACC+AGG | + | 10890:5945-5964 | None:intergenic | 45.0% |
!! | ATAAAATTATATAAATTGAT+TGG | + | 10890:2696-2715 | None:intergenic | 5.0% |
AAATAGTCCCCACACCTGAG+TGG | + | 10890:2280-2299 | None:intergenic | 50.0% | |
AAATGCTAACAAGGGGACCC+TGG | + | 10890:4447-4466 | None:intergenic | 50.0% | |
AAATGCTCCAACCTCCCATC+CGG | + | 10890:2144-2163 | None:intergenic | 50.0% | |
AATGCTAACAAGGGGACCCT+GGG | + | 10890:4446-4465 | None:intergenic | 50.0% | |
ACAGCCAGGAGATCCATATG+TGG | - | 10890:6234-6253 | MS.gene24012:CDS | 50.0% | |
ACTACAACCACTCAGGTGTG+GGG | - | 10890:2270-2289 | MS.gene24012:CDS | 50.0% | |
ACTGGTCAATTGTACTGCCC+TGG | - | 10890:4741-4760 | MS.gene24012:intron | 50.0% | |
AGTGAACTCACGTAGCAGGA+TGG | + | 10890:4769-4788 | None:intergenic | 50.0% | |
AGTTGGGAAACCAGGCACAT+TGG | + | 10890:5937-5956 | None:intergenic | 50.0% | |
ATCCATATGTGGGACGTAGC+CGG | - | 10890:6245-6264 | MS.gene24012:CDS | 50.0% | |
CAACAAATATCGCCAGTCCC+AGG | + | 10890:3964-3983 | None:intergenic | 50.0% | |
CACACCTGAGTGGTTGTAGT+AGG | + | 10890:2270-2289 | None:intergenic | 50.0% | |
CAGCCAGGAGATCCATATGT+GGG | - | 10890:6235-6254 | MS.gene24012:CDS | 50.0% | |
CAGTGGCTTCTTCCATGTAC+CGG | + | 10890:6267-6286 | None:intergenic | 50.0% | |
CCAGTCAATATCTGCAGCGA+TGG | + | 10890:3334-3353 | None:intergenic | 50.0% | |
CCATCGCTGCAGATATTGAC+TGG | - | 10890:3331-3350 | MS.gene24012:intron | 50.0% | |
CCCTGTCATTCCCTTTCAAC+TGG | - | 10890:4723-4742 | MS.gene24012:intron | 50.0% | |
CGATTTCAATACCGGATGGG+AGG | - | 10890:2130-2149 | MS.gene24012:CDS | 50.0% | |
CTACTACAACCACTCAGGTG+TGG | - | 10890:2268-2287 | MS.gene24012:CDS | 50.0% | |
GACACCAAGTTGCTCACTTG+TGG | - | 10890:5830-5849 | MS.gene24012:intron | 50.0% | |
GGAGGTGACTGTAGCAAAGA+TGG | + | 10890:4930-4949 | None:intergenic | 50.0% | |
GTACATCCTCCCATTGTGAC+AGG | - | 10890:5006-5025 | MS.gene24012:intron | 50.0% | |
GTACATGGAAGAAGCCACTG+AGG | - | 10890:6267-6286 | MS.gene24012:CDS | 50.0% | |
GTTCCCACAAGTGAGCAACT+TGG | + | 10890:5837-5856 | None:intergenic | 50.0% | |
GTTGCTCACTTGTGGGAACA+TGG | - | 10890:5838-5857 | MS.gene24012:intron | 50.0% | |
GTTTCCTTAACTAGTGCCCC+AGG | - | 10890:4426-4445 | MS.gene24012:intron | 50.0% | |
TGCGGAACGAGTCATTTCAG+AGG | - | 10890:6151-6170 | MS.gene24012:CDS | 50.0% | |
TTAGTTAGCACGCCCCTCTA+AGG | + | 10890:4293-4312 | None:intergenic | 50.0% | |
TTCAATACCGGATGGGAGGT+TGG | - | 10890:2134-2153 | MS.gene24012:CDS | 50.0% | |
TTTCTGCGTTGCGTGTGGAT+CGG | - | 10890:2001-2020 | MS.gene24012:CDS | 50.0% | |
! | CACATGCAGATGCCCTTTTC+AGG | + | 10890:5989-6008 | None:intergenic | 50.0% |
! | GGAGTATTTGAAGCGTGGTG+AGG | - | 10890:1945-1964 | MS.gene24012:CDS | 50.0% |
! | GTTGCGTGTGGATCGGTTTA+AGG | - | 10890:2008-2027 | MS.gene24012:CDS | 50.0% |
! | TCCGGTATTGAAATCGACGG+AGG | + | 10890:2126-2145 | None:intergenic | 50.0% |
!! | CCGTCGATTTCAATACCGGA+TGG | - | 10890:2126-2145 | MS.gene24012:CDS | 50.0% |
!! | CGGCAGTTTTGACCCTGAAA+AGG | - | 10890:5973-5992 | MS.gene24012:intron | 50.0% |
!! | CTGAAAAGGGCATCTGCATG+TGG | - | 10890:5987-6006 | MS.gene24012:intron | 50.0% |
!! | GCCTCCGTCGATTTCAATAC+CGG | - | 10890:2122-2141 | MS.gene24012:CDS | 50.0% |
!! | GTGAGCAACTTGGTGTCATC+AGG | + | 10890:5827-5846 | None:intergenic | 50.0% |
ATGCTAACAAGGGGACCCTG+GGG | + | 10890:4445-4464 | None:intergenic | 55.0% | |
CACGTAGCAGGATGGAACCA+GGG | + | 10890:4761-4780 | None:intergenic | 55.0% | |
CGTCCCACATATGGATCTCC+TGG | + | 10890:6241-6260 | None:intergenic | 55.0% | |
GAAAGTTGTAGCACAGCCGG+AGG | + | 10890:4948-4967 | None:intergenic | 55.0% | |
GCACAGTGAACTCACGTAGC+AGG | + | 10890:4773-4792 | None:intergenic | 55.0% | |
GCGTGCTAACTAATGCCCAG+GGG | - | 10890:4300-4319 | MS.gene24012:intron | 55.0% | |
GGCGTGCTAACTAATGCCCA+GGG | - | 10890:4299-4318 | MS.gene24012:intron | 55.0% | |
TAGGAGACTTGTCCTGGGAC+TGG | - | 10890:3949-3968 | MS.gene24012:intron | 55.0% | |
TCACGTAGCAGGATGGAACC+AGG | + | 10890:4762-4781 | None:intergenic | 55.0% | |
! | AATGGGGGTGTAGCTGCAGA+TGG | + | 10890:4970-4989 | None:intergenic | 55.0% |
! | GGATGGGAGGTTGGAGCATT+TGG | - | 10890:2143-2162 | MS.gene24012:CDS | 55.0% |
! | TACCGGCTACGTCCCACATA+TGG | + | 10890:6250-6269 | None:intergenic | 55.0% |
ACGCGTTTCTGCGTTGCGTG+TGG | - | 10890:1996-2015 | MS.gene24012:CDS | 60.0% | |
GCAAAGATGGTTGGGCTCGC+CGG | + | 10890:4917-4936 | None:intergenic | 60.0% | |
GGGCGTGCTAACTAATGCCC+AGG | - | 10890:4298-4317 | MS.gene24012:intron | 60.0% | |
TCAACCACACGCGCCTTCTC+CGG | - | 10890:4846-4865 | MS.gene24012:intron | 60.0% | |
TGTGGGACGTAGCCGGTACA+TGG | - | 10890:6252-6271 | MS.gene24012:CDS | 60.0% | |
! | GGACCCTGGGGCACTAGTTA+AGG | + | 10890:4433-4452 | None:intergenic | 60.0% |
AAGATGGTTGGGCTCGCCGG+AGG | + | 10890:4914-4933 | None:intergenic | 65.0% | |
GGCTCGCCGGAGGATTCCAA+AGG | + | 10890:4904-4923 | None:intergenic | 65.0% | |
! | CTCACCGGAGAAGGCGCGTG+TGG | + | 10890:4853-4872 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
10890 | gene | 1937 | 6361 | 1937 | ID=MS.gene24012 |
10890 | mRNA | 1937 | 6361 | 1937 | ID=MS.gene24012.t1;Parent=MS.gene24012 |
10890 | exon | 6012 | 6361 | 6012 | ID=MS.gene24012.t1.exon1;Parent=MS.gene24012.t1 |
10890 | CDS | 6012 | 6361 | 6012 | ID=cds.MS.gene24012.t1;Parent=MS.gene24012.t1 |
10890 | exon | 4853 | 4916 | 4853 | ID=MS.gene24012.t1.exon2;Parent=MS.gene24012.t1 |
10890 | CDS | 4853 | 4916 | 4853 | ID=cds.MS.gene24012.t1;Parent=MS.gene24012.t1 |
10890 | exon | 2237 | 2552 | 2237 | ID=MS.gene24012.t1.exon3;Parent=MS.gene24012.t1 |
10890 | CDS | 2237 | 2552 | 2237 | ID=cds.MS.gene24012.t1;Parent=MS.gene24012.t1 |
10890 | exon | 1937 | 2205 | 1937 | ID=MS.gene24012.t1.exon4;Parent=MS.gene24012.t1 |
10890 | CDS | 1937 | 2205 | 1937 | ID=cds.MS.gene24012.t1;Parent=MS.gene24012.t1 |
Gene Sequence |
Protein sequence |