Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24298.t1 | XP_013466066.1 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 3.30E-238 | 833.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24298.t1 | Q9LN62 | 70.3 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 1.6e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24298.t1 | A0A072VPP4 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 2.3e-238 | 833.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04986 | MS.gene24298 | 0.801158 | 1.03E-48 | -1.69E-46 |
| MS.gene050170 | MS.gene24298 | -0.803826 | 2.90E-49 | -1.69E-46 |
| MS.gene050521 | MS.gene24298 | 0.818738 | 1.68E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene24298 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene24298 | -0.818384 | 2.02E-52 | -1.69E-46 |
| MS.gene052494 | MS.gene24298 | 0.809512 | 1.82E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene24298 | 0.823748 | 1.17E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene24298 | -0.805154 | 1.53E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene24298 | -0.809443 | 1.89E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene24298 | -0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene24298 | 0.801869 | 7.34E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene24298 | 0.821928 | 3.11E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene24298 | 0.816529 | 5.28E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene24298 | 0.819592 | 1.07E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene24298 | 0.822441 | 2.37E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene24298 | 0.809142 | 2.19E-50 | -1.69E-46 |
| MS.gene06042 | MS.gene24298 | 0.859072 | 5.33E-63 | -1.69E-46 |
| MS.gene060929 | MS.gene24298 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene24298 | -0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene24298 | 0.83779 | 4.22E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24298.t1 | MTR_1g022025 | 98.131 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 0.0 | 874 |
| MS.gene24298.t1 | MTR_4g069260 | 73.182 | 440 | 102 | 3 | 1 | 428 | 1 | 436 | 0.0 | 676 |
| MS.gene24298.t1 | MTR_4g069300 | 69.767 | 430 | 123 | 2 | 5 | 427 | 7 | 436 | 0.0 | 618 |
| MS.gene24298.t1 | MTR_4g069430 | 68.545 | 426 | 119 | 5 | 5 | 427 | 7 | 420 | 0.0 | 583 |
| MS.gene24298.t1 | MTR_4g069420 | 65.268 | 429 | 135 | 2 | 5 | 427 | 7 | 427 | 0.0 | 577 |
| MS.gene24298.t1 | MTR_4g069350 | 64.651 | 430 | 138 | 3 | 5 | 427 | 7 | 429 | 0.0 | 568 |
| MS.gene24298.t1 | MTR_4g069390 | 72.832 | 346 | 89 | 1 | 82 | 427 | 12 | 352 | 0.0 | 538 |
| MS.gene24298.t1 | MTR_5g025590 | 27.805 | 205 | 131 | 6 | 145 | 344 | 103 | 295 | 1.19e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24298.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene24298.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene24298.t1 | AT1G75110 | 68.736 | 435 | 122 | 4 | 1 | 428 | 1 | 428 | 0.0 | 626 |
| MS.gene24298.t1 | AT1G75120 | 61.631 | 417 | 141 | 2 | 11 | 427 | 5 | 402 | 0.0 | 532 |
| MS.gene24298.t1 | AT2G35610 | 25.120 | 418 | 238 | 17 | 3 | 398 | 8 | 372 | 1.04e-12 | 70.5 |
Find 91 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTGATGAACCTAAAA+TGG | 0.118559 | 1.1:-2333279 | MS.gene24298:CDS |
| AGTTGGCATATCTAATTATT+TGG | 0.214194 | 1.1:-2333594 | MS.gene24298:CDS |
| TATGCCAACTTTCTTGATAT+TGG | 0.231969 | 1.1:+2333607 | None:intergenic |
| CCCCTTTGATTATATTTATA+GGG | 0.245145 | 1.1:-2333363 | MS.gene24298:CDS |
| TTCATCCTTGCAAGTTTATC+AGG | 0.257490 | 1.1:+2332942 | None:intergenic |
| ACCCCTTTGATTATATTTAT+AGG | 0.264534 | 1.1:-2333364 | MS.gene24298:CDS |
| CATAGCAATCATACAGCTTA+TGG | 0.265461 | 1.1:-2333311 | MS.gene24298:CDS |
| TAAAGAGGTCGTTGTTGTTC+TGG | 0.289152 | 1.1:-2333669 | MS.gene24298:CDS |
| ATGCTCATACCATGAGAATA+TGG | 0.294158 | 1.1:-2333244 | MS.gene24298:CDS |
| GAACCTTACTGTTCATAAAA+AGG | 0.300928 | 1.1:+2333036 | None:intergenic |
| AAACACAAGGCTGGTCCTTT+TGG | 0.309663 | 1.1:-2333785 | MS.gene24298:CDS |
| TTCAACGCATTAACTTGTTC+TGG | 0.347234 | 1.1:+2333938 | None:intergenic |
| AGCTCAATTGAAGGAATTGT+TGG | 0.375607 | 1.1:+2333191 | None:intergenic |
| GGTGGGAATCATGCTGTCTC+TGG | 0.396405 | 1.1:-2333470 | MS.gene24298:CDS |
| CCTTCACATCCTGGTTATGA+TGG | 0.408046 | 1.1:-2333092 | MS.gene24298:CDS |
| TCCGAGATGCGGTGATTGAA+TGG | 0.416396 | 1.1:+2335234 | None:intergenic |
| CCCTAGATTGGCAAAACTCT+TGG | 0.417448 | 1.1:-2333708 | MS.gene24298:CDS |
| TGATGAACCTAAAATGGGTT+GGG | 0.421735 | 1.1:-2333273 | MS.gene24298:CDS |
| AAGAAGAACGCCGATGAAAA+CGG | 0.426281 | 1.1:+2335202 | None:intergenic |
| TTCTGTTATTCCCGATGAAT+CGG | 0.434960 | 1.1:-2333735 | MS.gene24298:CDS |
| TAATGTGTTGGAGATGTTAC+AGG | 0.437641 | 1.1:-2333639 | MS.gene24298:CDS |
| TCCCTATAAATATAATCAAA+GGG | 0.442068 | 1.1:+2333362 | None:intergenic |
| ACCAACCTTGTGACTGAGAA+TGG | 0.449721 | 1.1:+2335118 | None:intergenic |
| GAATTCTGAGCTGAAGAAGC+AGG | 0.473704 | 1.1:-2333888 | MS.gene24298:CDS |
| TCTAATGGAGAAGCTGCGTT+TGG | 0.475422 | 1.1:-2333858 | MS.gene24298:CDS |
| ATCCCTATAAATATAATCAA+AGG | 0.485270 | 1.1:+2333361 | None:intergenic |
| GAAGCAGGTGAAAGGTCTAA+TGG | 0.486719 | 1.1:-2333873 | MS.gene24298:CDS |
| TGAATCGGTGAACCCTAGAT+TGG | 0.487843 | 1.1:-2333720 | MS.gene24298:CDS |
| CGATCTAAAAGCTCAATTGA+AGG | 0.489088 | 1.1:+2333182 | None:intergenic |
| ATTGAATCAACACCTTGATC+CGG | 0.489958 | 1.1:+2333503 | None:intergenic |
| TAGTTGAGTTCTATGTCAAC+GGG | 0.490164 | 1.1:-2332914 | MS.gene24298:CDS |
| GGAAATTGCTATTTATAAAG+AGG | 0.490420 | 1.1:-2333684 | MS.gene24298:CDS |
| GTTGATTCAATTGCCAAGTC+GGG | 0.491275 | 1.1:-2333491 | MS.gene24298:CDS |
| ACGGAACAGTTTGTTGTGCT+TGG | 0.491386 | 1.1:-2333812 | MS.gene24298:CDS |
| AATGGAGAAGCTGCGTTTGG+CGG | 0.496977 | 1.1:-2333855 | MS.gene24298:CDS |
| TTGATGAACCTAAAATGGGT+TGG | 0.498626 | 1.1:-2333274 | MS.gene24298:CDS |
| TGCTCATACCATGAGAATAT+GGG | 0.499575 | 1.1:-2333243 | MS.gene24298:CDS |
| TCCTACTAATCAGAACCATC+GGG | 0.500121 | 1.1:+2332867 | None:intergenic |
| TCTAGGGTTCACCGATTCAT+CGG | 0.501111 | 1.1:+2333724 | None:intergenic |
| CTAGGGTTCACCGATTCATC+GGG | 0.503259 | 1.1:+2333725 | None:intergenic |
| AGAATATGGGTATATAACTC+TGG | 0.505845 | 1.1:-2333230 | MS.gene24298:CDS |
| TTGAGAGAGTTTCTGCAACT+AGG | 0.508202 | 1.1:-2333431 | MS.gene24298:CDS |
| TTCACCAATATCAAGAAAGT+TGG | 0.508424 | 1.1:-2333611 | MS.gene24298:CDS |
| GGCTTTCTAAAGAGAAAGCA+TGG | 0.511884 | 1.1:-2333148 | MS.gene24298:CDS |
| AGGTTACAGCGTTCTCCTCT+CGG | 0.515400 | 1.1:-2333411 | MS.gene24298:CDS |
| GTCTTTGATGAACCTAAAAT+GGG | 0.519326 | 1.1:-2333278 | MS.gene24298:CDS |
| ATCCTACTAATCAGAACCAT+CGG | 0.522896 | 1.1:+2332866 | None:intergenic |
| TATAGAAGAGACCCGGATCA+AGG | 0.525636 | 1.1:-2333515 | MS.gene24298:CDS |
| AGCATGATTCCCACCCGACT+TGG | 0.527468 | 1.1:+2333478 | None:intergenic |
| GCGTTTGGCGGAGCAAGGAA+AGG | 0.528394 | 1.1:-2333843 | MS.gene24298:CDS |
| TAGATTGGCAAAACTCTTGG+CGG | 0.530183 | 1.1:-2333705 | MS.gene24298:CDS |
| TCCGGGTCTCTTCTATAGAC+AGG | 0.531058 | 1.1:+2333521 | None:intergenic |
| GATTCAATTGCCAAGTCGGG+TGG | 0.535736 | 1.1:-2333488 | MS.gene24298:CDS |
| TTGAATCAACACCTTGATCC+GGG | 0.540173 | 1.1:+2333504 | None:intergenic |
| TGTTGATTCAATTGCCAAGT+CGG | 0.547442 | 1.1:-2333492 | MS.gene24298:CDS |
| AAGCTGCGTTTGGCGGAGCA+AGG | 0.554092 | 1.1:-2333848 | MS.gene24298:CDS |
| CCATCATAACCAGGATGTGA+AGG | 0.557644 | 1.1:+2333092 | None:intergenic |
| GTAGTTGAGTTCTATGTCAA+CGG | 0.558544 | 1.1:-2332915 | MS.gene24298:CDS |
| ATTTGATAAACAGCAATGGC+AGG | 0.559173 | 1.1:-2335290 | None:intergenic |
| TCTGGCTAACACTAATGTGT+TGG | 0.561756 | 1.1:-2333651 | MS.gene24298:CDS |
| AGAGCCTTGACAGTGCCAAA+AGG | 0.564867 | 1.1:+2333770 | None:intergenic |
| ACCATTCAATCACCGCATCT+CGG | 0.566295 | 1.1:-2335235 | MS.gene24298:CDS |
| GAGCTGAAGAAGCAGGTGAA+AGG | 0.566632 | 1.1:-2333881 | MS.gene24298:CDS |
| TATTTATAGGGATTCAGATG+TGG | 0.569522 | 1.1:-2333351 | MS.gene24298:CDS |
| TGTTGGAGATGTTACAGGTA+TGG | 0.571269 | 1.1:-2333634 | MS.gene24298:CDS |
| CGTTTGGCGGAGCAAGGAAA+GGG | 0.575655 | 1.1:-2333842 | MS.gene24298:CDS |
| GTTATATACCCATATTCTCA+TGG | 0.587662 | 1.1:+2333235 | None:intergenic |
| TAGTTAACATGTACAATCAC+AGG | 0.592948 | 1.1:+2332969 | None:intergenic |
| GCAAGGAAAGGGTCATGCTA+CGG | 0.593930 | 1.1:-2333831 | MS.gene24298:CDS |
| ATCATCCTGATAAACTTGCA+AGG | 0.604744 | 1.1:-2332947 | MS.gene24298:CDS |
| CATCATAACCAGGATGTGAA+GGG | 0.619342 | 1.1:+2333093 | None:intergenic |
| ATTCAATTGCCAAGTCGGGT+GGG | 0.620463 | 1.1:-2333487 | MS.gene24298:CDS |
| TCCTGTCTATAGAAGAGACC+CGG | 0.625262 | 1.1:-2333522 | MS.gene24298:CDS |
| GATTCATCGGGAATAACAGA+AGG | 0.626071 | 1.1:+2333737 | None:intergenic |
| GCGCTCGACAGTTTCCCCGA+TGG | 0.627821 | 1.1:-2332882 | MS.gene24298:CDS |
| GCATGAAGTCCATCATAACC+AGG | 0.631266 | 1.1:+2333083 | None:intergenic |
| CCCTATAAATATAATCAAAG+GGG | 0.636439 | 1.1:+2333363 | None:intergenic |
| TTTCTCTTTAGAAAGCCGAT+CGG | 0.638101 | 1.1:+2333154 | None:intergenic |
| TCATGCTGCAAAGAGAACAA+TGG | 0.639030 | 1.1:-2333066 | MS.gene24298:CDS |
| GATGTGGAGTCAATGTCAGA+TGG | 0.642589 | 1.1:-2333335 | MS.gene24298:CDS |
| GGCAACGGCGATCCGAGATG+CGG | 0.643444 | 1.1:+2335223 | None:intergenic |
| AACGCCGATGAAAACGGCAA+CGG | 0.643805 | 1.1:+2335208 | None:intergenic |
| CTTGGTGAGAAACACAAGGC+TGG | 0.654456 | 1.1:-2333794 | MS.gene24298:CDS |
| GCTTTCTAAAGAGAAAGCAT+GGG | 0.666613 | 1.1:-2333147 | MS.gene24298:CDS |
| GAGAATGGTCTGAGTTGATG+CGG | 0.680850 | 1.1:+2335133 | None:intergenic |
| AATGGTCTGAGTTGATGCGG+TGG | 0.700511 | 1.1:+2335136 | None:intergenic |
| TCAGACCATTCTCAGTCACA+AGG | 0.710546 | 1.1:-2335123 | MS.gene24298:intron |
| ACACAATATCGACATCCGAG+AGG | 0.744525 | 1.1:+2333396 | None:intergenic |
| CCTACTAATCAGAACCATCG+GGG | 0.749180 | 1.1:+2332868 | None:intergenic |
| TGTGCTTGGTGAGAAACACA+AGG | 0.756567 | 1.1:-2333798 | MS.gene24298:CDS |
| GTGGAAATGAAGAAACCGTG+TGG | 0.802724 | 1.1:+2335155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATATGCTTT+AGG | + | chr1.1:2333754-2333773 | None:intergenic | 10.0% |
| !!! | AAAATTTTGAACAAAAATAG+AGG | + | chr1.1:2333488-2333507 | None:intergenic | 15.0% |
| !!! | AATAATGTGGATTATATTAA+TGG | - | chr1.1:2333823-2333842 | MS.gene24298:CDS | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | - | chr1.1:2333841-2333860 | MS.gene24298:CDS | 15.0% |
| !!! | ATAACTTGTTTATCAAAATA+TGG | - | chr1.1:2333416-2333435 | MS.gene24298:CDS | 15.0% |
| !!! | TAATGGATTTTATATACTTT+AGG | - | chr1.1:2333840-2333859 | MS.gene24298:CDS | 15.0% |
| !! | ATCCCTATAAATATAATCAA+AGG | + | chr1.1:2334789-2334808 | None:intergenic | 20.0% |
| !! | TCCCTATAAATATAATCAAA+GGG | + | chr1.1:2334788-2334807 | None:intergenic | 20.0% |
| !!! | ACAAATTTTCACATACATTA+GGG | + | chr1.1:2333782-2333801 | None:intergenic | 20.0% |
| ! | AAGTTAGCCATTCAATTTAT+GGG | - | chr1.1:2333523-2333542 | MS.gene24298:CDS | 25.0% |
| ! | ACCCCTTTGATTATATTTAT+AGG | - | chr1.1:2334783-2334802 | MS.gene24298:intron | 25.0% |
| ! | AGTTGGCATATCTAATTATT+TGG | - | chr1.1:2334553-2334572 | MS.gene24298:intron | 25.0% |
| ! | ATACTTCAGAACTAAATTGA+TGG | + | chr1.1:2333716-2333735 | None:intergenic | 25.0% |
| ! | ATGTTATTAAGATGTGGTAA+GGG | + | chr1.1:2333901-2333920 | None:intergenic | 25.0% |
| ! | CCCCTTTGATTATATTTATA+GGG | - | chr1.1:2334784-2334803 | MS.gene24298:intron | 25.0% |
| ! | CCCTATAAATATAATCAAAG+GGG | + | chr1.1:2334787-2334806 | None:intergenic | 25.0% |
| ! | GGTCTAATATTTACAAAACT+TGG | - | chr1.1:2333437-2333456 | MS.gene24298:CDS | 25.0% |
| ! | TAATCCATGTTATTAAGATG+TGG | + | chr1.1:2333907-2333926 | None:intergenic | 25.0% |
| ! | TACTTTACCCATAAATTGAA+TGG | + | chr1.1:2333533-2333552 | None:intergenic | 25.0% |
| ! | TAGCAAATCATATAATGCAT+CGG | - | chr1.1:2333684-2333703 | MS.gene24298:CDS | 25.0% |
| !! | CATCTTAATAACATGGATTA+AGG | - | chr1.1:2333907-2333926 | MS.gene24298:CDS | 25.0% |
| !! | GACAAATTTTCACATACATT+AGG | + | chr1.1:2333783-2333802 | None:intergenic | 25.0% |
| !!! | GGAAATTGCTATTTATAAAG+AGG | - | chr1.1:2334463-2334482 | MS.gene24298:intron | 25.0% |
| !!! | TAAGTTTTTTGAGACGATTT+GGG | - | chr1.1:2333105-2333124 | MS.gene24298:CDS | 25.0% |
| AAACATACCCTTAAGTAGAA+AGG | + | chr1.1:2333207-2333226 | None:intergenic | 30.0% | |
| AGAATATGGGTATATAACTC+TGG | - | chr1.1:2334917-2334936 | MS.gene24298:intron | 30.0% | |
| ATCCACATTATTAAGATGTC+AGG | + | chr1.1:2333815-2333834 | None:intergenic | 30.0% | |
| CATGTTAAGGATATCAAAAG+TGG | + | chr1.1:2334016-2334035 | None:intergenic | 30.0% | |
| CATGTTATTAAGATGTGGTA+AGG | + | chr1.1:2333902-2333921 | None:intergenic | 30.0% | |
| CTTACCACATCTTAATAACA+TGG | - | chr1.1:2333900-2333919 | MS.gene24298:CDS | 30.0% | |
| GAACCTTACTGTTCATAAAA+AGG | + | chr1.1:2335114-2335133 | None:intergenic | 30.0% | |
| GAAGTTAGCCATTCAATTTA+TGG | - | chr1.1:2333522-2333541 | MS.gene24298:CDS | 30.0% | |
| GTAACTGCTATAACATCATT+AGG | - | chr1.1:2333459-2333478 | MS.gene24298:CDS | 30.0% | |
| GTCTTTGATGAACCTAAAAT+GGG | - | chr1.1:2334869-2334888 | MS.gene24298:intron | 30.0% | |
| GTTATATACCCATATTCTCA+TGG | + | chr1.1:2334915-2334934 | None:intergenic | 30.0% | |
| TAGGGACTACTTATATACTT+AGG | - | chr1.1:2333859-2333878 | MS.gene24298:CDS | 30.0% | |
| TAGTTAACATGTACAATCAC+AGG | + | chr1.1:2335181-2335200 | None:intergenic | 30.0% | |
| TATGCCAACTTTCTTGATAT+TGG | + | chr1.1:2334543-2334562 | None:intergenic | 30.0% | |
| TATTTATAGGGATTCAGATG+TGG | - | chr1.1:2334796-2334815 | MS.gene24298:intron | 30.0% | |
| TCCACATTATTAAGATGTCA+GGG | + | chr1.1:2333814-2333833 | None:intergenic | 30.0% | |
| TGGATTAAGGAACTCAATAT+AGG | - | chr1.1:2333920-2333939 | MS.gene24298:CDS | 30.0% | |
| TGTCTTTGATGAACCTAAAA+TGG | - | chr1.1:2334868-2334887 | MS.gene24298:intron | 30.0% | |
| TTCACCAATATCAAGAAAGT+TGG | - | chr1.1:2334536-2334555 | MS.gene24298:intron | 30.0% | |
| ! | GTACCTTTTTATGAACAGTA+AGG | - | chr1.1:2335108-2335127 | MS.gene24298:intron | 30.0% |
| ! | TGTTATGTTGTGTCATTAGA+TGG | - | chr1.1:2334166-2334185 | MS.gene24298:intron | 30.0% |
| ! | TTTAGCTCCTTTCTACTTAA+GGG | - | chr1.1:2333197-2333216 | MS.gene24298:CDS | 30.0% |
| !! | TAGTTCTGAACTAATCACAA+TGG | - | chr1.1:2333646-2333665 | MS.gene24298:CDS | 30.0% |
| !!! | GTAAGTTTTTTGAGACGATT+TGG | - | chr1.1:2333104-2333123 | MS.gene24298:CDS | 30.0% |
| !!! | TTTTAGCTCCTTTCTACTTA+AGG | - | chr1.1:2333196-2333215 | MS.gene24298:CDS | 30.0% |
| AGCTCAATTGAAGGAATTGT+TGG | + | chr1.1:2334959-2334978 | None:intergenic | 35.0% | |
| ATCATCCTGATAAACTTGCA+AGG | - | chr1.1:2335200-2335219 | MS.gene24298:CDS | 35.0% | |
| ATGCTCATACCATGAGAATA+TGG | - | chr1.1:2334903-2334922 | MS.gene24298:intron | 35.0% | |
| ATTGAATCAACACCTTGATC+CGG | + | chr1.1:2334647-2334666 | None:intergenic | 35.0% | |
| CATAGCAATCATACAGCTTA+TGG | - | chr1.1:2334836-2334855 | MS.gene24298:intron | 35.0% | |
| CGATCTAAAAGCTCAATTGA+AGG | + | chr1.1:2334968-2334987 | None:intergenic | 35.0% | |
| GTAGTTGAGTTCTATGTCAA+CGG | - | chr1.1:2335232-2335251 | MS.gene24298:CDS | 35.0% | |
| TAATGTGTTGGAGATGTTAC+AGG | - | chr1.1:2334508-2334527 | MS.gene24298:intron | 35.0% | |
| TAGTTGAGTTCTATGTCAAC+GGG | - | chr1.1:2335233-2335252 | MS.gene24298:CDS | 35.0% | |
| TCCCTGACATCTTAATAATG+TGG | - | chr1.1:2333810-2333829 | MS.gene24298:CDS | 35.0% | |
| TGCTCATACCATGAGAATAT+GGG | - | chr1.1:2334904-2334923 | MS.gene24298:intron | 35.0% | |
| TTCATCCTTGCAAGTTTATC+AGG | + | chr1.1:2335208-2335227 | None:intergenic | 35.0% | |
| TTCTGTTATTCCCGATGAAT+CGG | - | chr1.1:2334412-2334431 | MS.gene24298:intron | 35.0% | |
| TTGATGAACCTAAAATGGGT+TGG | - | chr1.1:2334873-2334892 | MS.gene24298:intron | 35.0% | |
| ! | GATTGAATGGTTTTTGTCTC+TGG | + | chr1.1:2332903-2332922 | None:intergenic | 35.0% |
| ! | GCTTTCTAAAGAGAAAGCAT+GGG | - | chr1.1:2335000-2335019 | MS.gene24298:intron | 35.0% |
| ! | TGATGAACCTAAAATGGGTT+GGG | - | chr1.1:2334874-2334893 | MS.gene24298:intron | 35.0% |
| ! | TGTGATTAGTTCAGAACTAG+TGG | + | chr1.1:2333645-2333664 | None:intergenic | 35.0% |
| ! | TTTCTCTTTAGAAAGCCGAT+CGG | + | chr1.1:2334996-2335015 | None:intergenic | 35.0% |
| !! | AAAGTGTCTGTTTTCAGCTT+AGG | - | chr1.1:2333152-2333171 | MS.gene24298:CDS | 35.0% |
| !! | TGTTGATTCAATTGCCAAGT+CGG | - | chr1.1:2334655-2334674 | MS.gene24298:intron | 35.0% |
| !! | TTCAACGCATTAACTTGTTC+TGG | + | chr1.1:2334212-2334231 | None:intergenic | 35.0% |
| AAGAAGAACGCCGATGAAAA+CGG | + | chr1.1:2332948-2332967 | None:intergenic | 40.0% | |
| ATCCTTAACATGTGCCCTTA+GGG | - | chr1.1:2334024-2334043 | MS.gene24298:intron | 40.0% | |
| CATCATAACCAGGATGTGAA+GGG | + | chr1.1:2335057-2335076 | None:intergenic | 40.0% | |
| GATTCATCGGGAATAACAGA+AGG | + | chr1.1:2334413-2334432 | None:intergenic | 40.0% | |
| TAGATTGGCAAAACTCTTGG+CGG | - | chr1.1:2334442-2334461 | MS.gene24298:intron | 40.0% | |
| TATCCTTAACATGTGCCCTT+AGG | - | chr1.1:2334023-2334042 | MS.gene24298:intron | 40.0% | |
| TCATGCTGCAAAGAGAACAA+TGG | - | chr1.1:2335081-2335100 | MS.gene24298:intron | 40.0% | |
| TCTGGCTAACACTAATGTGT+TGG | - | chr1.1:2334496-2334515 | MS.gene24298:intron | 40.0% | |
| TGTTGGAGATGTTACAGGTA+TGG | - | chr1.1:2334513-2334532 | MS.gene24298:intron | 40.0% | |
| TTGAATCAACACCTTGATCC+GGG | + | chr1.1:2334646-2334665 | None:intergenic | 40.0% | |
| TTGAGAGAGTTTCTGCAACT+AGG | - | chr1.1:2334716-2334735 | MS.gene24298:intron | 40.0% | |
| ! | CCAAGAGTTTTGCCAATCTA+GGG | + | chr1.1:2334442-2334461 | None:intergenic | 40.0% |
| ! | GGCTTTCTAAAGAGAAAGCA+TGG | - | chr1.1:2334999-2335018 | MS.gene24298:intron | 40.0% |
| ! | GTTGATTCAATTGCCAAGTC+GGG | - | chr1.1:2334656-2334675 | MS.gene24298:intron | 40.0% |
| ! | TAAAGAGGTCGTTGTTGTTC+TGG | - | chr1.1:2334478-2334497 | MS.gene24298:intron | 40.0% |
| ! | TATCTAGCCCAACCCATTTT+AGG | + | chr1.1:2334884-2334903 | None:intergenic | 40.0% |
| ! | TTCGCTTTCTTTTCACCACA+CGG | - | chr1.1:2332977-2332996 | MS.gene24298:CDS | 40.0% |
| ACACAATATCGACATCCGAG+AGG | + | chr1.1:2334754-2334773 | None:intergenic | 45.0% | |
| ACCAACCTTGTGACTGAGAA+TGG | + | chr1.1:2333032-2333051 | None:intergenic | 45.0% | |
| ACCATTCAATCACCGCATCT+CGG | - | chr1.1:2332912-2332931 | MS.gene24298:CDS | 45.0% | |
| ACCATTCTCAGTCACAAGGT+TGG | - | chr1.1:2333028-2333047 | MS.gene24298:CDS | 45.0% | |
| ATTCAATTGCCAAGTCGGGT+GGG | - | chr1.1:2334660-2334679 | MS.gene24298:intron | 45.0% | |
| CCATCATAACCAGGATGTGA+AGG | + | chr1.1:2335058-2335077 | None:intergenic | 45.0% | |
| CCCTAGATTGGCAAAACTCT+TGG | - | chr1.1:2334439-2334458 | MS.gene24298:intron | 45.0% | |
| CCTTCACATCCTGGTTATGA+TGG | - | chr1.1:2335055-2335074 | MS.gene24298:intron | 45.0% | |
| GAAGCAGGTGAAAGGTCTAA+TGG | - | chr1.1:2334274-2334293 | MS.gene24298:intron | 45.0% | |
| GAATTCTGAGCTGAAGAAGC+AGG | - | chr1.1:2334259-2334278 | MS.gene24298:intron | 45.0% | |
| GATGTGGAGTCAATGTCAGA+TGG | - | chr1.1:2334812-2334831 | MS.gene24298:intron | 45.0% | |
| GCATGAAGTCCATCATAACC+AGG | + | chr1.1:2335067-2335086 | None:intergenic | 45.0% | |
| GTGGAAATGAAGAAACCGTG+TGG | + | chr1.1:2332995-2333014 | None:intergenic | 45.0% | |
| TATAGAAGAGACCCGGATCA+AGG | - | chr1.1:2334632-2334651 | MS.gene24298:intron | 45.0% | |
| TCAGACCATTCTCAGTCACA+AGG | - | chr1.1:2333024-2333043 | MS.gene24298:CDS | 45.0% | |
| TCCTGTCTATAGAAGAGACC+CGG | - | chr1.1:2334625-2334644 | MS.gene24298:intron | 45.0% | |
| TCTAATGGAGAAGCTGCGTT+TGG | - | chr1.1:2334289-2334308 | MS.gene24298:intron | 45.0% | |
| TGAATCGGTGAACCCTAGAT+TGG | - | chr1.1:2334427-2334446 | MS.gene24298:intron | 45.0% | |
| ! | CTCTTTTACCCTTCACATCC+TGG | - | chr1.1:2335046-2335065 | MS.gene24298:intron | 45.0% |
| ! | CTGACATGTGTTTTGTGCGA+CGG | - | chr1.1:2333255-2333274 | MS.gene24298:CDS | 45.0% |
| ! | GCCAAGAGTTTTGCCAATCT+AGG | + | chr1.1:2334443-2334462 | None:intergenic | 45.0% |
| ! | GTTTTCATCGGCGTTCTTCT+TGG | - | chr1.1:2332947-2332966 | MS.gene24298:CDS | 45.0% |
| ! | TGTGCTAACTTGTGCCCTAA+GGG | + | chr1.1:2334041-2334060 | None:intergenic | 45.0% |
| ! | TGTGCTTGGTGAGAAACACA+AGG | - | chr1.1:2334349-2334368 | MS.gene24298:intron | 45.0% |
| ! | TTCTCAGTCACAAGGTTGGT+TGG | - | chr1.1:2333032-2333051 | MS.gene24298:CDS | 45.0% |
| ! | TTGTGCTAACTTGTGCCCTA+AGG | + | chr1.1:2334042-2334061 | None:intergenic | 45.0% |
| ! | TTTTAGATCGCGTTGCCGAT+CGG | - | chr1.1:2334978-2334997 | MS.gene24298:intron | 45.0% |
| !! | AAACACAAGGCTGGTCCTTT+TGG | - | chr1.1:2334362-2334381 | MS.gene24298:intron | 45.0% |
| !! | ACGGAACAGTTTGTTGTGCT+TGG | - | chr1.1:2334335-2334354 | MS.gene24298:intron | 45.0% |
| !! | GAGAATGGTCTGAGTTGATG+CGG | + | chr1.1:2333017-2333036 | None:intergenic | 45.0% |
| !! | TCTAGGGTTCACCGATTCAT+CGG | + | chr1.1:2334426-2334445 | None:intergenic | 45.0% |
| AACGCCGATGAAAACGGCAA+CGG | + | chr1.1:2332942-2332961 | None:intergenic | 50.0% | |
| AATGGAGAAGCTGCGTTTGG+CGG | - | chr1.1:2334292-2334311 | MS.gene24298:intron | 50.0% | |
| AGAGCCTTGACAGTGCCAAA+AGG | + | chr1.1:2334380-2334399 | None:intergenic | 50.0% | |
| AGGTTACAGCGTTCTCCTCT+CGG | - | chr1.1:2334736-2334755 | MS.gene24298:intron | 50.0% | |
| CTTGGTGAGAAACACAAGGC+TGG | - | chr1.1:2334353-2334372 | MS.gene24298:intron | 50.0% | |
| GAGCTGAAGAAGCAGGTGAA+AGG | - | chr1.1:2334266-2334285 | MS.gene24298:intron | 50.0% | |
| GATTCAATTGCCAAGTCGGG+TGG | - | chr1.1:2334659-2334678 | MS.gene24298:intron | 50.0% | |
| GCAAGGAAAGGGTCATGCTA+CGG | - | chr1.1:2334316-2334335 | MS.gene24298:intron | 50.0% | |
| TCCGAGATGCGGTGATTGAA+TGG | + | chr1.1:2332916-2332935 | None:intergenic | 50.0% | |
| TCCGGGTCTCTTCTATAGAC+AGG | + | chr1.1:2334629-2334648 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | + | chr1.1:2334029-2334048 | None:intergenic | 50.0% |
| ! | TGGTCCTTTTGGCACTGTCA+AGG | - | chr1.1:2334373-2334392 | MS.gene24298:intron | 50.0% |
| !! | AATGGTCTGAGTTGATGCGG+TGG | + | chr1.1:2333014-2333033 | None:intergenic | 50.0% |
| !! | CTAGGGTTCACCGATTCATC+GGG | + | chr1.1:2334425-2334444 | None:intergenic | 50.0% |
| !!! | ATCGCCGTTGCCGTTTTCAT+CGG | - | chr1.1:2332935-2332954 | MS.gene24298:CDS | 50.0% |
| AGCATGATTCCCACCCGACT+TGG | + | chr1.1:2334672-2334691 | None:intergenic | 55.0% | |
| CGTTTGGCGGAGCAAGGAAA+GGG | - | chr1.1:2334305-2334324 | MS.gene24298:intron | 55.0% | |
| GGTGGGAATCATGCTGTCTC+TGG | - | chr1.1:2334677-2334696 | MS.gene24298:intron | 55.0% | |
| AAGCTGCGTTTGGCGGAGCA+AGG | - | chr1.1:2334299-2334318 | MS.gene24298:intron | 60.0% | |
| GCGTTTGGCGGAGCAAGGAA+AGG | - | chr1.1:2334304-2334323 | MS.gene24298:intron | 60.0% | |
| GCGCTCGACAGTTTCCCCGA+TGG | - | chr1.1:2335265-2335284 | MS.gene24298:CDS | 65.0% | |
| GGCAACGGCGATCCGAGATG+CGG | + | chr1.1:2332927-2332946 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2332872 | 2335297 | 2332872 | ID=MS.gene24298 |
| chr1.1 | mRNA | 2332872 | 2335297 | 2332872 | ID=MS.gene24298.t1;Parent=MS.gene24298 |
| chr1.1 | exon | 2335124 | 2335297 | 2335124 | ID=MS.gene24298.t1.exon1;Parent=MS.gene24298.t1 |
| chr1.1 | CDS | 2335124 | 2335297 | 2335124 | ID=cds.MS.gene24298.t1;Parent=MS.gene24298.t1 |
| chr1.1 | exon | 2332872 | 2333984 | 2332872 | ID=MS.gene24298.t1.exon2;Parent=MS.gene24298.t1 |
| chr1.1 | CDS | 2332872 | 2333984 | 2332872 | ID=cds.MS.gene24298.t1;Parent=MS.gene24298.t1 |
| Gene Sequence |
| Protein sequence |
