Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24492.t1 | XP_003589042.1 | 97.5 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 2.00E-84 | 321.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24492.t1 | P17093 | 88.8 | 161 | 16 | 1 | 1 | 161 | 1 | 159 | 5.4e-78 | 291.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24492.t1 | G7IBA9 | 97.5 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 1.5e-84 | 321.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049501 | MS.gene24492 | 0.800448 | 1.43E-48 | -1.69E-46 |
MS.gene050303 | MS.gene24492 | 0.826188 | 3.11E-54 | -1.69E-46 |
MS.gene051247 | MS.gene24492 | 0.805737 | 1.16E-49 | -1.69E-46 |
MS.gene051330 | MS.gene24492 | 0.803271 | 3.77E-49 | -1.69E-46 |
MS.gene05134 | MS.gene24492 | 0.800455 | 1.43E-48 | -1.69E-46 |
MS.gene051744 | MS.gene24492 | 0.803603 | 3.22E-49 | -1.69E-46 |
MS.gene053226 | MS.gene24492 | 0.811236 | 7.74E-51 | -1.69E-46 |
MS.gene055808 | MS.gene24492 | 0.835598 | 1.53E-56 | -1.69E-46 |
MS.gene056091 | MS.gene24492 | 0.811857 | 5.68E-51 | -1.69E-46 |
MS.gene056631 | MS.gene24492 | 0.815784 | 7.74E-52 | -1.69E-46 |
MS.gene057140 | MS.gene24492 | 0.801431 | 9.03E-49 | -1.69E-46 |
MS.gene058084 | MS.gene24492 | 0.806784 | 6.95E-50 | -1.69E-46 |
MS.gene058906 | MS.gene24492 | 0.807059 | 6.08E-50 | -1.69E-46 |
MS.gene058908 | MS.gene24492 | 0.804767 | 1.84E-49 | -1.69E-46 |
MS.gene058911 | MS.gene24492 | 0.81741 | 3.35E-52 | -1.69E-46 |
MS.gene05954 | MS.gene24492 | 0.804234 | 2.38E-49 | -1.69E-46 |
MS.gene06001 | MS.gene24492 | 0.836493 | 9.06E-57 | -1.69E-46 |
MS.gene060429 | MS.gene24492 | 0.871447 | 6.79E-67 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24492.t1 | MTR_1g017780 | 97.516 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 2.51e-114 | 321 |
MS.gene24492.t1 | MTR_8g076830 | 92.547 | 161 | 11 | 1 | 1 | 161 | 1 | 160 | 7.37e-97 | 276 |
MS.gene24492.t1 | MTR_4g116410 | 91.925 | 161 | 12 | 1 | 1 | 161 | 1 | 160 | 1.08e-96 | 276 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24492.t1 | AT5G23740 | 86.957 | 161 | 19 | 1 | 1 | 161 | 1 | 159 | 2.39e-91 | 263 |
MS.gene24492.t1 | AT3G48930 | 85.714 | 161 | 22 | 1 | 1 | 161 | 1 | 160 | 9.23e-90 | 259 |
MS.gene24492.t1 | AT4G30800 | 85.714 | 161 | 21 | 1 | 1 | 161 | 1 | 159 | 2.05e-87 | 253 |
Find 49 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGGGGATCATGTTATTAT+TGG | 0.267190 | 1.1:-4822598 | MS.gene24492:CDS |
ATAATTCCTCCTAACAATAA+TGG | 0.308146 | 1.1:+4822800 | None:intergenic |
AAGCGATTGCCACCCTTTCC+AGG | 0.318925 | 1.1:+4823889 | None:intergenic |
TGAATAAAACCATTATTGTT+AGG | 0.334061 | 1.1:-4822809 | MS.gene24492:CDS |
GACTCCTGTAAACGCCTTCT+TGG | 0.362038 | 1.1:+4822376 | None:intergenic |
GGTGCCAAGAAGGCGTTTAC+AGG | 0.366657 | 1.1:-4822380 | MS.gene24492:CDS |
TACAATGATCTAACCTGCTT+TGG | 0.370829 | 1.1:+4822575 | None:intergenic |
GGGACACTTCTTGTCAATAT+AGG | 0.373630 | 1.1:+4822893 | None:intergenic |
TTGCTTCAGAAAAGCCTTCT+CGG | 0.396604 | 1.1:+4823957 | None:intergenic |
TTTGAGAAAGAAACCTTCAA+TGG | 0.449940 | 1.1:+4823825 | None:intergenic |
CCCTAGGAGTCTTAAAACTA+AGG | 0.476406 | 1.1:+4823851 | None:intergenic |
AACCTCACTGTCTTCGAAAG+TGG | 0.480699 | 1.1:+4822446 | None:intergenic |
ACTCCTAGGGAAGCCATTGA+AGG | 0.484194 | 1.1:-4823838 | MS.gene24492:intron |
GCTGGATCTTCTAGTGGTGC+CGG | 0.487132 | 1.1:-4822401 | MS.gene24492:CDS |
ATCCGAGGTCGTATCATATC+CGG | 0.504599 | 1.1:-4822852 | MS.gene24492:CDS |
ATGTTATTATTGGCCAAAGC+AGG | 0.505675 | 1.1:-4822588 | MS.gene24492:intron |
TCTGGGAAGGGGAAGAGACC+TGG | 0.510724 | 1.1:-4823907 | MS.gene24492:CDS |
TAGTGGTGCCGGTGCCAAGA+AGG | 0.518324 | 1.1:-4822390 | MS.gene24492:CDS |
GACAAGAAGTGTCCCTTCAC+TGG | 0.524673 | 1.1:-4822885 | MS.gene24492:CDS |
ATCACCTTGTTTCCGAGTGA+AGG | 0.529932 | 1.1:-4822620 | MS.gene24492:CDS |
AAGGGGAAGAGACCTGGAAA+GGG | 0.530695 | 1.1:-4823901 | MS.gene24492:CDS |
CCTTGTTTCCGAGTGAAGGA+AGG | 0.534218 | 1.1:-4822616 | MS.gene24492:CDS |
CCTTCCTTCACTCGGAAACA+AGG | 0.542963 | 1.1:+4822616 | None:intergenic |
TGCTCGAAGATATCTGGGAA+GGG | 0.550883 | 1.1:-4823919 | MS.gene24492:CDS |
CTTGTTTCCGAGTGAAGGAA+GGG | 0.551830 | 1.1:-4822615 | MS.gene24492:CDS |
ATAAAACCATTATTGTTAGG+AGG | 0.551945 | 1.1:-4822806 | MS.gene24492:CDS |
GTATTGAAAGTCATCCCAGC+TGG | 0.559579 | 1.1:-4822419 | MS.gene24492:CDS |
GGGAAGAGACCTGGAAAGGG+TGG | 0.564985 | 1.1:-4823898 | MS.gene24492:CDS |
TTTGAATTTGTAGACCGAGA+AGG | 0.567346 | 1.1:-4823971 | MS.gene24492:intron |
GCACCACTAGAAGATCCAGC+TGG | 0.568341 | 1.1:+4822404 | None:intergenic |
CAAACTAACTTGTTCAGCCA+TGG | 0.568984 | 1.1:+4824070 | None:intergenic |
ATCCCAGCTGGATCTTCTAG+TGG | 0.570183 | 1.1:-4822407 | MS.gene24492:CDS |
GAAGGGGAAGAGACCTGGAA+AGG | 0.571357 | 1.1:-4823902 | MS.gene24492:CDS |
CGTGTGCAGGAATATTAGAA+TGG | 0.572181 | 1.1:+4822644 | None:intergenic |
CTTAGCACTATGGCAAGTAC+CGG | 0.576116 | 1.1:+4822833 | None:intergenic |
CATGATCCCCTTCCTTCACT+CGG | 0.580378 | 1.1:+4822608 | None:intergenic |
GTGCTCGAAGATATCTGGGA+AGG | 0.582495 | 1.1:-4823920 | MS.gene24492:CDS |
AAACCTTCAATGGCTTCCCT+AGG | 0.582868 | 1.1:+4823835 | None:intergenic |
AAACAAGGTGATACGTGTGC+AGG | 0.596227 | 1.1:+4822631 | None:intergenic |
GCTCGAAGATATCTGGGAAG+GGG | 0.598893 | 1.1:-4823918 | MS.gene24492:CDS |
GATTGAGACATTACCAGTGA+AGG | 0.618985 | 1.1:+4822872 | None:intergenic |
TTGTTTCCGAGTGAAGGAAG+GGG | 0.622320 | 1.1:-4822614 | MS.gene24492:CDS |
ATTGAGACATTACCAGTGAA+GGG | 0.624989 | 1.1:+4822873 | None:intergenic |
CACCACTAGAAGATCCAGCT+GGG | 0.629304 | 1.1:+4822405 | None:intergenic |
ACTGGTAATGTCTCAATCCG+AGG | 0.640857 | 1.1:-4822867 | MS.gene24492:CDS |
TGTAAACGCCTTCTTGGCAC+CGG | 0.648607 | 1.1:+4822382 | None:intergenic |
ATTTCATTAAGAAATATCAG+AGG | 0.666848 | 1.1:-4822773 | MS.gene24492:intron |
GGCCACTTTCGAAGACAGTG+AGG | 0.699031 | 1.1:-4822448 | MS.gene24492:CDS |
TACCGGATATGATACGACCT+CGG | 0.712271 | 1.1:+4822850 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAGAATTTATATCATAT+AGG | - | chr1.1:4822878-4822897 | MS.gene24492:CDS | 10.0% |
!! | GTTACCAATTTATTTATATA+AGG | - | chr1.1:4823479-4823498 | MS.gene24492:intron | 15.0% |
!!! | GAATAATAAAGCTTTTTTTT+TGG | - | chr1.1:4823897-4823916 | MS.gene24492:CDS | 15.0% |
!! | AGGACCTTATATAAATAAAT+TGG | + | chr1.1:4823486-4823505 | None:intergenic | 20.0% |
!! | ATTTCATTAAGAAATATCAG+AGG | - | chr1.1:4823668-4823687 | MS.gene24492:intron | 20.0% |
!! | CAAATTATAGATTAATGTGA+AGG | + | chr1.1:4822400-4822419 | None:intergenic | 20.0% |
!! | GTATTAGATTACAAAAACAA+AGG | + | chr1.1:4823506-4823525 | None:intergenic | 20.0% |
!! | TGAATAAAACCATTATTGTT+AGG | - | chr1.1:4823632-4823651 | MS.gene24492:intron | 20.0% |
!! | TTCCTATAAGATTAAGAAAA+AGG | + | chr1.1:4823528-4823547 | None:intergenic | 20.0% |
!! | TTGAATTTAACTATCTTATC+CGG | + | chr1.1:4822826-4822845 | None:intergenic | 20.0% |
!! | TTTAAAAATCATAGGTAGAT+TGG | - | chr1.1:4822716-4822735 | MS.gene24492:intron | 20.0% |
!!! | CATTGTGTTTTAAAAATCAT+AGG | - | chr1.1:4822708-4822727 | MS.gene24492:intron | 20.0% |
!!! | TACCTTTTTCTTAATCTTAT+AGG | - | chr1.1:4823523-4823542 | MS.gene24492:intron | 20.0% |
!!! | TAGATTGGTTTATTATTGAT+AGG | - | chr1.1:4822731-4822750 | MS.gene24492:intron | 20.0% |
!!! | TAGCTTACAAAAAAAGTATA+AGG | + | chr1.1:4823203-4823222 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTTGACAAATCT+TGG | - | chr1.1:4822422-4822441 | MS.gene24492:CDS | 20.0% |
! | AGGACTTATTAAAACAGTTT+AGG | + | chr1.1:4823390-4823409 | None:intergenic | 25.0% |
! | AGTTAAATTCAATCCTTGTT+AGG | - | chr1.1:4822834-4822853 | MS.gene24492:CDS | 25.0% |
! | ATAAAACCATTATTGTTAGG+AGG | - | chr1.1:4823635-4823654 | MS.gene24492:intron | 25.0% |
! | ATAAGTTGTTTATCCTAACA+AGG | + | chr1.1:4822850-4822869 | None:intergenic | 25.0% |
! | ATAATTCCTCCTAACAATAA+TGG | + | chr1.1:4823644-4823663 | None:intergenic | 25.0% |
! | CTTAATTGAGTAACTTATAG+CGG | - | chr1.1:4823154-4823173 | MS.gene24492:intron | 25.0% |
! | TAAACCACGAATATGAAAAT+TGG | + | chr1.1:4822648-4822667 | None:intergenic | 25.0% |
! | TAGCTTATGAAAATAGCTTA+TGG | + | chr1.1:4823320-4823339 | None:intergenic | 25.0% |
! | TCTTGGATTTACTAACTAAT+TGG | - | chr1.1:4822439-4822458 | MS.gene24492:CDS | 25.0% |
! | TTACTCAATTAAGATTGCAA+TGG | + | chr1.1:4823147-4823166 | None:intergenic | 25.0% |
! | TTTACTAAAAAAGACTCGAT+TGG | - | chr1.1:4823013-4823032 | MS.gene24492:intron | 25.0% |
!! | AAGTAAACGGAATCTTTTAA+AGG | - | chr1.1:4822936-4822955 | MS.gene24492:intron | 25.0% |
!! | AGTAAACGGAATCTTTTAAA+GGG | - | chr1.1:4822937-4822956 | MS.gene24492:intron | 25.0% |
!! | TTTTATTCATCTTAGCACTA+TGG | + | chr1.1:4823621-4823640 | None:intergenic | 25.0% |
!! | TTTTCATATTCGTGGTTTAA+TGG | - | chr1.1:4822649-4822668 | MS.gene24492:CDS | 25.0% |
!!! | AATCGCTTTTATAAAACTGT+TGG | - | chr1.1:4822567-4822586 | MS.gene24492:intron | 25.0% |
AGCTATAAGCTCATAAACAT+AGG | + | chr1.1:4823067-4823086 | None:intergenic | 30.0% | |
ATTTAACTATCTTATCCGGT+TGG | + | chr1.1:4822822-4822841 | None:intergenic | 30.0% | |
CTCTGTTTGGTAAAAAATAG+TGG | + | chr1.1:4823297-4823316 | None:intergenic | 30.0% | |
GTATCACAAGACAAAGTAAA+CGG | - | chr1.1:4822923-4822942 | MS.gene24492:intron | 30.0% | |
TAAGCTATAAGCTCAAAAAC+TGG | + | chr1.1:4822977-4822996 | None:intergenic | 30.0% | |
TGTGTATGCTTGTTCTTATT+AGG | - | chr1.1:4823763-4823782 | MS.gene24492:intron | 30.0% | |
TTACTGTATTTGTATGCTAC+AGG | - | chr1.1:4823724-4823743 | MS.gene24492:intron | 30.0% | |
TTGATTGAATTAGTAGCGTT+TGG | + | chr1.1:4823244-4823263 | None:intergenic | 30.0% | |
TTGTATGACATTCAGTTGTT+AGG | - | chr1.1:4822784-4822803 | MS.gene24492:CDS | 30.0% | |
TTTGAGAAAGAAACCTTCAA+TGG | + | chr1.1:4822619-4822638 | None:intergenic | 30.0% | |
TTTGTCTTGTGATACAGAAA+TGG | + | chr1.1:4822918-4822937 | None:intergenic | 30.0% | |
! | GTTTCCAATTTTCATATTCG+TGG | - | chr1.1:4822641-4822660 | MS.gene24492:CDS | 30.0% |
! | TTTTTGTAAGCTACTTCAAC+CGG | - | chr1.1:4823210-4823229 | MS.gene24492:intron | 30.0% |
!! | AATCTTTTAAAGGGTCTGTT+TGG | - | chr1.1:4822946-4822965 | MS.gene24492:intron | 30.0% |
!!! | TGGTTTTGTTTATCCAAGTA+AGG | - | chr1.1:4823917-4823936 | MS.gene24492:CDS | 30.0% |
AAGCTATCATGAAGAGCTTA+TGG | - | chr1.1:4823334-4823353 | MS.gene24492:intron | 35.0% | |
ACAGAAATGGCGTATTCATA+AGG | + | chr1.1:4822905-4822924 | None:intergenic | 35.0% | |
AGATAAGCTCAAATAAGCCA+TGG | - | chr1.1:4823447-4823466 | MS.gene24492:intron | 35.0% | |
ATGTTATTATTGGCCAAAGC+AGG | - | chr1.1:4823853-4823872 | MS.gene24492:CDS | 35.0% | |
ATTGAGACATTACCAGTGAA+GGG | + | chr1.1:4823571-4823590 | None:intergenic | 35.0% | |
CACAAAAACAGTTCCTTACT+TGG | + | chr1.1:4823933-4823952 | None:intergenic | 35.0% | |
CAGAAATGGCGTATTCATAA+GGG | + | chr1.1:4822904-4822923 | None:intergenic | 35.0% | |
CTATGAACAAGCAGAAGTAA+AGG | + | chr1.1:4823974-4823993 | None:intergenic | 35.0% | |
CTTTACTTCTGCTTGTTCAT+AGG | - | chr1.1:4823972-4823991 | MS.gene24492:intron | 35.0% | |
GAAGGGGATCATGTTATTAT+TGG | - | chr1.1:4823843-4823862 | MS.gene24492:CDS | 35.0% | |
GTAGCGTTTGGTAAAATTAC+CGG | + | chr1.1:4823232-4823251 | None:intergenic | 35.0% | |
TACAATGATCTAACCTGCTT+TGG | + | chr1.1:4823869-4823888 | None:intergenic | 35.0% | |
TTTAAAGGGTCTGTTTGGTA+AGG | - | chr1.1:4822951-4822970 | MS.gene24492:intron | 35.0% | |
TTTGAATTTGTAGACCGAGA+AGG | - | chr1.1:4822470-4822489 | MS.gene24492:intron | 35.0% | |
! | AAATAGCTTATGGCTCTGTT+TGG | + | chr1.1:4823310-4823329 | None:intergenic | 35.0% |
! | TTGGTAACATAAACATGCCA+TGG | + | chr1.1:4823467-4823486 | None:intergenic | 35.0% |
! | TTTTGTGCTCGAAGATATCT+GGG | - | chr1.1:4822517-4822536 | MS.gene24492:intron | 35.0% |
! | TTTTTGTGCTCGAAGATATC+TGG | - | chr1.1:4822516-4822535 | MS.gene24492:intron | 35.0% |
!!! | CCTTAGTTTTAAGACTCCTA+GGG | - | chr1.1:4822590-4822609 | MS.gene24492:CDS | 35.0% |
AGCAGAAGTAAAGGTAATCG+AGG | + | chr1.1:4823965-4823984 | None:intergenic | 40.0% | |
ATTCATTCCCCTTTCTTACC+AGG | - | chr1.1:4823692-4823711 | MS.gene24492:intron | 40.0% | |
CCCTAGGAGTCTTAAAACTA+AGG | + | chr1.1:4822593-4822612 | None:intergenic | 40.0% | |
CGTGTGCAGGAATATTAGAA+TGG | + | chr1.1:4823800-4823819 | None:intergenic | 40.0% | |
GATTGAGACATTACCAGTGA+AGG | + | chr1.1:4823572-4823591 | None:intergenic | 40.0% | |
GCAGAAGTAAAGGTAATCGA+GGG | + | chr1.1:4823964-4823983 | None:intergenic | 40.0% | |
GGATAGCTTAAAGCTGTTAG+CGG | + | chr1.1:4823276-4823295 | None:intergenic | 40.0% | |
GGGACACTTCTTGTCAATAT+AGG | + | chr1.1:4823551-4823570 | None:intergenic | 40.0% | |
TTCATTCCCCTTTCTTACCA+GGG | - | chr1.1:4823693-4823712 | MS.gene24492:intron | 40.0% | |
TTGCTTCAGAAAAGCCTTCT+CGG | + | chr1.1:4822487-4822506 | None:intergenic | 40.0% | |
!!! | GCCTTAGTTTTAAGACTCCT+AGG | - | chr1.1:4822589-4822608 | MS.gene24492:CDS | 40.0% |
AAACAAGGTGATACGTGTGC+AGG | + | chr1.1:4823813-4823832 | None:intergenic | 45.0% | |
AAACCTTCAATGGCTTCCCT+AGG | + | chr1.1:4822609-4822628 | None:intergenic | 45.0% | |
AACCTCACTGTCTTCGAAAG+TGG | + | chr1.1:4823998-4824017 | None:intergenic | 45.0% | |
AGGAAATAGTCCTAGCCAAC+CGG | - | chr1.1:4822804-4822823 | MS.gene24492:CDS | 45.0% | |
ATCCGAGGTCGTATCATATC+CGG | - | chr1.1:4823589-4823608 | MS.gene24492:intron | 45.0% | |
CTTAGCACTATGGCAAGTAC+CGG | + | chr1.1:4823611-4823630 | None:intergenic | 45.0% | |
CTTGTTTCCGAGTGAAGGAA+GGG | - | chr1.1:4823826-4823845 | MS.gene24492:intron | 45.0% | |
GTATTGAAAGTCATCCCAGC+TGG | - | chr1.1:4824022-4824041 | MS.gene24492:intron | 45.0% | |
TACCGGATATGATACGACCT+CGG | + | chr1.1:4823594-4823613 | None:intergenic | 45.0% | |
TGCTCGAAGATATCTGGGAA+GGG | - | chr1.1:4822522-4822541 | MS.gene24492:intron | 45.0% | |
TTGTTTCCGAGTGAAGGAAG+GGG | - | chr1.1:4823827-4823846 | MS.gene24492:intron | 45.0% | |
! | ACTATCTTATCCGGTTGGCT+AGG | + | chr1.1:4822817-4822836 | None:intergenic | 45.0% |
! | ACTGGTAATGTCTCAATCCG+AGG | - | chr1.1:4823574-4823593 | MS.gene24492:intron | 45.0% |
! | ATCACCTTGTTTCCGAGTGA+AGG | - | chr1.1:4823821-4823840 | MS.gene24492:intron | 45.0% |
AAGGGGAAGAGACCTGGAAA+GGG | - | chr1.1:4822540-4822559 | MS.gene24492:intron | 50.0% | |
ACTCCTAGGGAAGCCATTGA+AGG | - | chr1.1:4822603-4822622 | MS.gene24492:CDS | 50.0% | |
ATACAGTAAACTGCGCACCC+TGG | + | chr1.1:4823713-4823732 | None:intergenic | 50.0% | |
ATCCCAGCTGGATCTTCTAG+TGG | - | chr1.1:4824034-4824053 | MS.gene24492:intron | 50.0% | |
CACCACTAGAAGATCCAGCT+GGG | + | chr1.1:4824039-4824058 | None:intergenic | 50.0% | |
CATGATCCCCTTCCTTCACT+CGG | + | chr1.1:4823836-4823855 | None:intergenic | 50.0% | |
CCTTCCTTCACTCGGAAACA+AGG | + | chr1.1:4823828-4823847 | None:intergenic | 50.0% | |
GACTCCTGTAAACGCCTTCT+TGG | + | chr1.1:4824068-4824087 | None:intergenic | 50.0% | |
GCTCGAAGATATCTGGGAAG+GGG | - | chr1.1:4822523-4822542 | MS.gene24492:intron | 50.0% | |
GTGACATCATTTGCGTTGCG+AGG | + | chr1.1:4823410-4823429 | None:intergenic | 50.0% | |
GTGCTCGAAGATATCTGGGA+AGG | - | chr1.1:4822521-4822540 | MS.gene24492:intron | 50.0% | |
TGTAAACGCCTTCTTGGCAC+CGG | + | chr1.1:4824062-4824081 | None:intergenic | 50.0% | |
! | CCTTGTTTCCGAGTGAAGGA+AGG | - | chr1.1:4823825-4823844 | MS.gene24492:intron | 50.0% |
!! | GACAAGAAGTGTCCCTTCAC+TGG | - | chr1.1:4823556-4823575 | MS.gene24492:intron | 50.0% |
AAGCGATTGCCACCCTTTCC+AGG | + | chr1.1:4822555-4822574 | None:intergenic | 55.0% | |
ACTGCGCACCCTGGTAAGAA+AGG | + | chr1.1:4823704-4823723 | None:intergenic | 55.0% | |
CTGCGCACCCTGGTAAGAAA+GGG | + | chr1.1:4823703-4823722 | None:intergenic | 55.0% | |
GAAGGGGAAGAGACCTGGAA+AGG | - | chr1.1:4822539-4822558 | MS.gene24492:intron | 55.0% | |
GCACCACTAGAAGATCCAGC+TGG | + | chr1.1:4824040-4824059 | None:intergenic | 55.0% | |
GCTGGATCTTCTAGTGGTGC+CGG | - | chr1.1:4824040-4824059 | MS.gene24492:intron | 55.0% | |
TGCGCACCCTGGTAAGAAAG+GGG | + | chr1.1:4823702-4823721 | None:intergenic | 55.0% | |
! | GGCCACTTTCGAAGACAGTG+AGG | - | chr1.1:4823993-4824012 | MS.gene24492:intron | 55.0% |
!! | GGTGCCAAGAAGGCGTTTAC+AGG | - | chr1.1:4824061-4824080 | MS.gene24492:intron | 55.0% |
GGGAAGAGACCTGGAAAGGG+TGG | - | chr1.1:4822543-4822562 | MS.gene24492:intron | 60.0% | |
TCTGGGAAGGGGAAGAGACC+TGG | - | chr1.1:4822534-4822553 | MS.gene24492:intron | 60.0% | |
!! | TAGTGGTGCCGGTGCCAAGA+AGG | - | chr1.1:4824051-4824070 | MS.gene24492:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 4822373 | 4824090 | 4822373 | ID=MS.gene24492 |
chr1.1 | mRNA | 4822373 | 4824090 | 4822373 | ID=MS.gene24492.t1;Parent=MS.gene24492 |
chr1.1 | exon | 4824079 | 4824090 | 4824079 | ID=MS.gene24492.t1.exon1;Parent=MS.gene24492.t1 |
chr1.1 | CDS | 4824079 | 4824090 | 4824079 | ID=cds.MS.gene24492.t1;Parent=MS.gene24492.t1 |
chr1.1 | exon | 4823839 | 4823980 | 4823839 | ID=MS.gene24492.t1.exon2;Parent=MS.gene24492.t1 |
chr1.1 | CDS | 4823839 | 4823980 | 4823839 | ID=cds.MS.gene24492.t1;Parent=MS.gene24492.t1 |
chr1.1 | exon | 4822774 | 4822918 | 4822774 | ID=MS.gene24492.t1.exon3;Parent=MS.gene24492.t1 |
chr1.1 | CDS | 4822774 | 4822918 | 4822774 | ID=cds.MS.gene24492.t1;Parent=MS.gene24492.t1 |
chr1.1 | exon | 4822589 | 4822678 | 4822589 | ID=MS.gene24492.t1.exon4;Parent=MS.gene24492.t1 |
chr1.1 | CDS | 4822589 | 4822678 | 4822589 | ID=cds.MS.gene24492.t1;Parent=MS.gene24492.t1 |
chr1.1 | exon | 4822373 | 4822469 | 4822373 | ID=MS.gene24492.t1.exon5;Parent=MS.gene24492.t1 |
chr1.1 | CDS | 4822373 | 4822469 | 4822373 | ID=cds.MS.gene24492.t1;Parent=MS.gene24492.t1 |
Gene Sequence |
Protein sequence |