Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24556.t1 | XP_003589013.1 | 92.1 | 267 | 6 | 1 | 1 | 267 | 1 | 252 | 9.10E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24556.t1 | Q9FN15 | 39.2 | 199 | 105 | 2 | 27 | 225 | 58 | 240 | 1.7e-28 | 127.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24556.t1 | G7IB80 | 92.1 | 267 | 6 | 1 | 1 | 267 | 1 | 252 | 6.6e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene24556 | 0.812691 | 3.73E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene24556 | 0.808961 | 2.39E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene24556 | 0.800225 | 1.59E-48 | -1.69E-46 |
| MS.gene051228 | MS.gene24556 | 0.8274 | 1.60E-54 | -1.69E-46 |
| MS.gene051617 | MS.gene24556 | 0.888847 | 4.10E-73 | -1.69E-46 |
| MS.gene051666 | MS.gene24556 | 0.812393 | 4.34E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene24556 | 0.818312 | 2.09E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene24556 | 0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene24556 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene052484 | MS.gene24556 | 0.812348 | 4.44E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene24556 | 0.804916 | 1.72E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene24556 | 0.807901 | 4.03E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene24556 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene24556 | 0.822663 | 2.10E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene24556 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene24556 | 0.824268 | 8.85E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene24556 | 0.83187 | 1.31E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene24556 | 0.837515 | 4.97E-57 | -1.69E-46 |
| MS.gene057124 | MS.gene24556 | 0.853306 | 2.61E-61 | -1.69E-46 |
| MS.gene057129 | MS.gene24556 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene05735 | MS.gene24556 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene24556 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene057927 | MS.gene24556 | 0.801776 | 7.68E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene24556 | 0.837993 | 3.74E-57 | -1.69E-46 |
| MS.gene058082 | MS.gene24556 | 0.813834 | 2.09E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene24556 | 0.823326 | 1.47E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene24556 | 0.814445 | 1.53E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene24556 | 0.80193 | 7.14E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene24556 | 0.806171 | 9.36E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene24556 | 0.803818 | 2.91E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene24556 | 0.808693 | 2.73E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene24556 | 0.818751 | 1.66E-52 | -1.69E-46 |
| MS.gene061051 | MS.gene24556 | -0.807108 | 5.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24556.t1 | MTR_1g016360 | 92.135 | 267 | 6 | 1 | 1 | 267 | 1 | 252 | 3.35e-178 | 490 |
| MS.gene24556.t1 | MTR_1g016360 | 89.163 | 203 | 7 | 1 | 1 | 203 | 1 | 188 | 8.08e-127 | 358 |
| MS.gene24556.t1 | MTR_1g016360 | 83.505 | 194 | 17 | 1 | 1 | 194 | 1 | 179 | 1.32e-111 | 320 |
| MS.gene24556.t1 | MTR_5g016100 | 43.182 | 176 | 84 | 2 | 50 | 225 | 66 | 225 | 2.88e-38 | 136 |
| MS.gene24556.t1 | MTR_5g016100 | 43.750 | 160 | 60 | 3 | 92 | 236 | 11 | 155 | 2.72e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24556.t1 | AT5G11840 | 57.196 | 271 | 77 | 6 | 13 | 263 | 9 | 260 | 1.01e-97 | 287 |
| MS.gene24556.t1 | AT5G11840 | 58.794 | 199 | 55 | 3 | 13 | 199 | 9 | 192 | 6.32e-75 | 227 |
| MS.gene24556.t1 | AT5G11840 | 58.586 | 198 | 55 | 3 | 13 | 198 | 9 | 191 | 3.42e-74 | 225 |
| MS.gene24556.t1 | AT5G11840 | 54.396 | 182 | 56 | 3 | 13 | 182 | 9 | 175 | 1.40e-60 | 190 |
| MS.gene24556.t1 | AT5G67370 | 38.462 | 208 | 112 | 2 | 18 | 225 | 49 | 240 | 9.18e-38 | 135 |
Find 57 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACGACTGGTACTCGTTTA+TGG | 0.126473 | 1.2:+6166225 | None:intergenic |
| GTTGATGGAGGGAATAGTTT+TGG | 0.223696 | 1.2:+6166379 | None:intergenic |
| TGCTGCTTCTAGTGGTGTTT+TGG | 0.278118 | 1.2:-6166044 | MS.gene24556:CDS |
| TGTTGGTGTGAATGGGAAAA+AGG | 0.279842 | 1.2:+6166350 | None:intergenic |
| CTTTGTTCTGTTGCTGTTGT+TGG | 0.287030 | 1.2:+6166312 | None:intergenic |
| TGGCTTGGTTTGGAACTGTT+GGG | 0.311583 | 1.2:-6166099 | MS.gene24556:CDS |
| GCTGGTAATGTTGTTGAATA+TGG | 0.316599 | 1.2:-6166175 | MS.gene24556:CDS |
| GGTGAAGACTGCTGAGGTTT+TGG | 0.325730 | 1.2:-6165013 | MS.gene24556:CDS |
| TTACCAGCAGCCCATGAAAA+TGG | 0.328778 | 1.2:+6166190 | None:intergenic |
| GGTAATGGTGATTGATTTGT+TGG | 0.349076 | 1.2:+6166333 | None:intergenic |
| GGGTTACCTGTGGCTTGGTT+TGG | 0.356647 | 1.2:-6166109 | MS.gene24556:CDS |
| AACGACTGGTACTCGTTTAT+GGG | 0.360388 | 1.2:+6166226 | None:intergenic |
| TCTGTTGCTGTTGTTGGTAA+TGG | 0.366769 | 1.2:+6166318 | None:intergenic |
| GTGGCTTGGTTTGGAACTGT+TGG | 0.374589 | 1.2:-6166100 | MS.gene24556:CDS |
| TTGTTAGGATGTATCTTGGT+TGG | 0.396546 | 1.2:-6166006 | MS.gene24556:CDS |
| GATTGATTTGTTGGTGTGAA+TGG | 0.406949 | 1.2:+6166342 | None:intergenic |
| TGTTAGGATGTATCTTGGTT+GGG | 0.425759 | 1.2:-6166005 | MS.gene24556:CDS |
| GCGGTTGTTAGGATGTATCT+TGG | 0.430246 | 1.2:-6166010 | MS.gene24556:CDS |
| AAAAGCCCACAACGAAAAGC+CGG | 0.436094 | 1.2:+6166149 | None:intergenic |
| ATGTTGTTGAATATGGTTCC+CGG | 0.438372 | 1.2:-6166168 | MS.gene24556:CDS |
| GGCTGCTGTTCTAACGGAAC+AGG | 0.440485 | 1.2:+6166247 | None:intergenic |
| ATCTTGGTTGGGCTTATGTT+GGG | 0.441526 | 1.2:-6165994 | MS.gene24556:CDS |
| TTGGCACGTGATAGACTCTT+GGG | 0.445944 | 1.2:-6164994 | MS.gene24556:CDS |
| AGTCGGTCTGGCAGCATGCT+TGG | 0.454960 | 1.2:-6163865 | MS.gene24556:CDS |
| TTTGGCACGTGATAGACTCT+TGG | 0.457104 | 1.2:-6164995 | MS.gene24556:CDS |
| TATTTAACATCGAGAGAAAC+CGG | 0.458605 | 1.2:-6163804 | MS.gene24556:CDS |
| CTCTGTTTAAGTTCAAGAAA+CGG | 0.462020 | 1.2:-6166280 | MS.gene24556:CDS |
| TCCAGGTATTGCTCGAACTC+CGG | 0.467416 | 1.2:+6163785 | None:intergenic |
| TATATTGCAGATGAGGAGAC+AGG | 0.467504 | 1.2:-6165664 | MS.gene24556:CDS |
| ATGTACTATTCTTCAAGATC+AGG | 0.468774 | 1.2:+6163708 | None:intergenic |
| TATCTTGGTTGGGCTTATGT+TGG | 0.471423 | 1.2:-6165995 | MS.gene24556:CDS |
| GGCTCACCACAAAATGCATC+TGG | 0.473478 | 1.2:+6163729 | None:intergenic |
| GACAGGGTGGTATGATGGCC+AGG | 0.475845 | 1.2:-6165647 | MS.gene24556:intron |
| TTGTGGGGTTACCTGTGGCT+TGG | 0.484321 | 1.2:-6166114 | MS.gene24556:CDS |
| ATTGATTTGTTGGTGTGAAT+GGG | 0.490693 | 1.2:+6166343 | None:intergenic |
| GAAAATCACTCTAGTCGGTC+TGG | 0.491715 | 1.2:-6163877 | MS.gene24556:CDS |
| TTTCCTTTGCCTTGCTTGTG+GGG | 0.493230 | 1.2:-6166129 | MS.gene24556:CDS |
| ACCGGAGTTCGAGCAATACC+TGG | 0.506149 | 1.2:-6163786 | MS.gene24556:CDS |
| GGCTTGGTTTGGAACTGTTG+GGG | 0.506638 | 1.2:-6166098 | MS.gene24556:CDS |
| GCACAAACAATTCTCTTAGC+AGG | 0.508243 | 1.2:+6166064 | None:intergenic |
| GAGGAGACAGGGTGGTATGA+TGG | 0.516290 | 1.2:-6165652 | MS.gene24556:CDS |
| CTCTCTTTATATTGCAGATG+AGG | 0.518306 | 1.2:-6165671 | MS.gene24556:CDS |
| ATTGTTTGTGCTGCTTCTAG+TGG | 0.521546 | 1.2:-6166052 | MS.gene24556:CDS |
| GATTCATCATTGTAAGCTCC+AGG | 0.524014 | 1.2:+6163768 | None:intergenic |
| AAAGCCCACAACGAAAAGCC+GGG | 0.532515 | 1.2:+6166150 | None:intergenic |
| TTTATGGGCTGCTGTTCTAA+CGG | 0.540735 | 1.2:+6166241 | None:intergenic |
| TAACCCCACAAGCAAGGCAA+AGG | 0.556717 | 1.2:+6166126 | None:intergenic |
| CTTGCTTGTGGGGTTACCTG+TGG | 0.557353 | 1.2:-6166119 | MS.gene24556:CDS |
| CACAGGTAACCCCACAAGCA+AGG | 0.573824 | 1.2:+6166120 | None:intergenic |
| TTCAAGGTTAAGCCTGTACT+CGG | 0.578638 | 1.2:-6163906 | MS.gene24556:intron |
| GAAACGATGTCGATAACGAC+TGG | 0.590284 | 1.2:+6166212 | None:intergenic |
| AGATTGAAAATCACTCTAGT+CGG | 0.609573 | 1.2:-6163882 | MS.gene24556:CDS |
| ACAGTTCCAAACCAAGCCAC+AGG | 0.624924 | 1.2:+6166103 | None:intergenic |
| ATATTGCAGATGAGGAGACA+GGG | 0.660822 | 1.2:-6165663 | MS.gene24556:CDS |
| AGATACATTACATTCAACAG+TGG | 0.729086 | 1.2:+6165955 | None:intergenic |
| TTGCAGATGAGGAGACAGGG+TGG | 0.732719 | 1.2:-6165660 | MS.gene24556:CDS |
| GATATGGGTGAAGACTGCTG+AGG | 0.749406 | 1.2:-6165019 | MS.gene24556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTACATATAAAATCT+TGG | - | chr1.2:6164509-6164528 | MS.gene24556:intron | 10.0% |
| !! | CAAAAATATAAATTTCCATA+AGG | + | chr1.2:6165870-6165889 | None:intergenic | 15.0% |
| !!! | GCAATAATTTTATAGTTAAA+CGG | - | chr1.2:6164276-6164295 | MS.gene24556:intron | 15.0% |
| !! | AAATATTTCTCTACAGATAT+GGG | - | chr1.2:6165085-6165104 | MS.gene24556:intron | 20.0% |
| !! | ATATCTGTAGAGAAATATTT+AGG | + | chr1.2:6165085-6165104 | None:intergenic | 20.0% |
| !! | ATTTATGCAAATGAAACTAA+CGG | - | chr1.2:6164650-6164669 | MS.gene24556:intron | 20.0% |
| !! | CATAAGGTTAAATTTAACAA+AGG | + | chr1.2:6165854-6165873 | None:intergenic | 20.0% |
| !! | CTTTGTTAAATTTAACCTTA+TGG | - | chr1.2:6165852-6165871 | MS.gene24556:intron | 20.0% |
| !! | GATCTTAAAGACTTAATATT+AGG | + | chr1.2:6165675-6165694 | None:intergenic | 20.0% |
| !! | TAAATATTTCTCTACAGATA+TGG | - | chr1.2:6165084-6165103 | MS.gene24556:intron | 20.0% |
| !! | TATCATATACGATTAATGTT+AGG | - | chr1.2:6164304-6164323 | MS.gene24556:intron | 20.0% |
| !! | TTCATTTGCATAAATTCATT+GGG | + | chr1.2:6164645-6164664 | None:intergenic | 20.0% |
| !! | TTTCATTTGCATAAATTCAT+TGG | + | chr1.2:6164646-6164665 | None:intergenic | 20.0% |
| !!! | ATATTGTTAGTGTTATTCAA+TGG | - | chr1.2:6164382-6164401 | MS.gene24556:intron | 20.0% |
| !!! | GAATATCAACAGATTTTAAA+AGG | + | chr1.2:6166120-6166139 | None:intergenic | 20.0% |
| !!! | TAAATAATTCCTGAATCTTT+TGG | + | chr1.2:6165365-6165384 | None:intergenic | 20.0% |
| !!! | TTTTAATAATGTGTCGATTA+TGG | + | chr1.2:6164882-6164901 | None:intergenic | 20.0% |
| ! | ACAAATGTTGTACAAAATAG+AGG | - | chr1.2:6165497-6165516 | MS.gene24556:intron | 25.0% |
| ! | ATAAAGAGAAAACAATTACC+TGG | + | chr1.2:6164493-6164512 | None:intergenic | 25.0% |
| ! | TGACATATCACAAAATATAG+TGG | + | chr1.2:6165627-6165646 | None:intergenic | 25.0% |
| ! | TTAAGACTATGTAAGTAGTA+GGG | - | chr1.2:6165288-6165307 | MS.gene24556:intron | 25.0% |
| ! | TTATCTATTACTTCCATGTA+TGG | - | chr1.2:6164208-6164227 | MS.gene24556:intron | 25.0% |
| ! | TTCAATTCATCCATTAATTG+AGG | - | chr1.2:6166051-6166070 | MS.gene24556:CDS | 25.0% |
| ! | TTCATATCATTAACGTATCA+TGG | + | chr1.2:6164360-6164379 | None:intergenic | 25.0% |
| !! | AAACTCTTTTGTAATGTTCA+AGG | - | chr1.2:6166197-6166216 | MS.gene24556:CDS | 25.0% |
| !! | ACTTGTTTGTGTTTTACTAA+TGG | - | chr1.2:6165005-6165024 | MS.gene24556:CDS | 25.0% |
| !! | TCTAAAGTCACATATATGAT+TGG | - | chr1.2:6164928-6164947 | MS.gene24556:intron | 25.0% |
| !! | TTTAAGACTATGTAAGTAGT+AGG | - | chr1.2:6165287-6165306 | MS.gene24556:intron | 25.0% |
| ACTATACACTCCTCAATTAA+TGG | + | chr1.2:6166064-6166083 | None:intergenic | 30.0% | |
| AGATACATTACATTCAACAG+TGG | + | chr1.2:6164167-6164186 | None:intergenic | 30.0% | |
| AGATTGAAAATCACTCTAGT+CGG | - | chr1.2:6166237-6166256 | MS.gene24556:CDS | 30.0% | |
| AGTGCATAAACATATCAAGA+TGG | + | chr1.2:6165800-6165819 | None:intergenic | 30.0% | |
| ATTTCCATACCAAAAGATTC+AGG | - | chr1.2:6165353-6165372 | MS.gene24556:intron | 30.0% | |
| CTCACTTGTAGTAAAACATT+AGG | - | chr1.2:6165740-6165759 | MS.gene24556:intron | 30.0% | |
| GTGTTAAGAAATTTGTGGAA+GGG | - | chr1.2:6164404-6164423 | MS.gene24556:intron | 30.0% | |
| TAAATCAAATGACAGGACAA+GGG | + | chr1.2:6164752-6164771 | None:intergenic | 30.0% | |
| TATTTAACATCGAGAGAAAC+CGG | - | chr1.2:6166315-6166334 | MS.gene24556:CDS | 30.0% | |
| TTCTGGATTACTTGTTTACT+TGG | - | chr1.2:6164553-6164572 | MS.gene24556:intron | 30.0% | |
| TTGGTATGGAAATTACTACA+AGG | + | chr1.2:6165346-6165365 | None:intergenic | 30.0% | |
| TTGTGTTGAAACTTCTTAAC+CGG | + | chr1.2:6164600-6164619 | None:intergenic | 30.0% | |
| ! | AAACGACGATTTTGTCAAAT+AGG | + | chr1.2:6166033-6166052 | None:intergenic | 30.0% |
| ! | AATTCCTGAATCTTTTGGTA+TGG | + | chr1.2:6165360-6165379 | None:intergenic | 30.0% |
| ! | ACGATTTTGTCAAATAGGAT+AGG | + | chr1.2:6166028-6166047 | None:intergenic | 30.0% |
| ! | CAATGGTGTTAAGAAATTTG+TGG | - | chr1.2:6164399-6164418 | MS.gene24556:intron | 30.0% |
| ! | CTCTGTTTAAGTTCAAGAAA+CGG | - | chr1.2:6163839-6163858 | MS.gene24556:CDS | 30.0% |
| !! | AATAATGTGTCGATTATGGA+TGG | + | chr1.2:6164878-6164897 | None:intergenic | 30.0% |
| !! | ATTGATTTGTTGGTGTGAAT+GGG | + | chr1.2:6163779-6163798 | None:intergenic | 30.0% |
| !!! | TCTCTTCATTTTGTTTTGGA+TGG | - | chr1.2:6164795-6164814 | MS.gene24556:intron | 30.0% |
| AATATGACACCTTAGCATAG+CGG | - | chr1.2:6165589-6165608 | MS.gene24556:intron | 35.0% | |
| ACACTGCAAGTTTCAAATTG+TGG | + | chr1.2:6165946-6165965 | None:intergenic | 35.0% | |
| ACAGTAAATGCTATAGCTCT+TGG | + | chr1.2:6165232-6165251 | None:intergenic | 35.0% | |
| ATGGAAATTACTACAAGGCA+TGG | + | chr1.2:6165341-6165360 | None:intergenic | 35.0% | |
| ATGTTGTTGAATATGGTTCC+CGG | - | chr1.2:6163951-6163970 | MS.gene24556:intron | 35.0% | |
| CTAAATCAAATGACAGGACA+AGG | + | chr1.2:6164753-6164772 | None:intergenic | 35.0% | |
| CTCTCTTTATATTGCAGATG+AGG | - | chr1.2:6164448-6164467 | MS.gene24556:intron | 35.0% | |
| GGTGTTAAGAAATTTGTGGA+AGG | - | chr1.2:6164403-6164422 | MS.gene24556:intron | 35.0% | |
| GGTTCATCTTTGTATGCTAT+TGG | - | chr1.2:6164530-6164549 | MS.gene24556:intron | 35.0% | |
| GTTCTAATTTCTCAAAGTCC+CGG | - | chr1.2:6164578-6164597 | MS.gene24556:intron | 35.0% | |
| TGATTGCATCAATGTGAGAA+TGG | - | chr1.2:6164252-6164271 | MS.gene24556:intron | 35.0% | |
| TGGATTACTTGTTTACTTGG+AGG | - | chr1.2:6164556-6164575 | MS.gene24556:intron | 35.0% | |
| TGTGTTGAAACTTCTTAACC+GGG | + | chr1.2:6164599-6164618 | None:intergenic | 35.0% | |
| TGTTAGGATGTATCTTGGTT+GGG | - | chr1.2:6164114-6164133 | MS.gene24556:intron | 35.0% | |
| TTGCACCTAAATCAAATGAC+AGG | + | chr1.2:6164759-6164778 | None:intergenic | 35.0% | |
| TTGTACTAAATAGCTCATCG+TGG | + | chr1.2:6165481-6165500 | None:intergenic | 35.0% | |
| TTGTTAGGATGTATCTTGGT+TGG | - | chr1.2:6164113-6164132 | MS.gene24556:intron | 35.0% | |
| ! | ATTTTCAATCTACCGAGTAC+AGG | + | chr1.2:6166228-6166247 | None:intergenic | 35.0% |
| ! | CTTGTCCTGTCATTTGATTT+AGG | - | chr1.2:6164751-6164770 | MS.gene24556:intron | 35.0% |
| ! | GACATCGTTTCCATTTTCAT+GGG | - | chr1.2:6163919-6163938 | MS.gene24556:intron | 35.0% |
| ! | GCTGGTAATGTTGTTGAATA+TGG | - | chr1.2:6163944-6163963 | MS.gene24556:intron | 35.0% |
| ! | GGAAAAAGGGTTTTTGTTGA+TGG | + | chr1.2:6163758-6163777 | None:intergenic | 35.0% |
| ! | TTGATGGAGGGAATAGTTTT+GGG | + | chr1.2:6163742-6163761 | None:intergenic | 35.0% |
| ! | TTTGAACCAGATGCATTTTG+TGG | - | chr1.2:6166384-6166403 | MS.gene24556:CDS | 35.0% |
| ! | TTTTGCTCTTTCTCCATACA+TGG | + | chr1.2:6164224-6164243 | None:intergenic | 35.0% |
| !! | AAAAGGGTTTTTGTTGATGG+AGG | + | chr1.2:6163755-6163774 | None:intergenic | 35.0% |
| !! | AAAGGGTTTTTGTTGATGGA+GGG | + | chr1.2:6163754-6163773 | None:intergenic | 35.0% |
| !! | GAGCTCTCTTCATTTTGTTT+TGG | - | chr1.2:6164791-6164810 | MS.gene24556:intron | 35.0% |
| !! | GATTGATTTGTTGGTGTGAA+TGG | + | chr1.2:6163780-6163799 | None:intergenic | 35.0% |
| !! | GGTAATGGTGATTGATTTGT+TGG | + | chr1.2:6163789-6163808 | None:intergenic | 35.0% |
| !! | TCTTTGTATGCTATTGGTTC+TGG | - | chr1.2:6164536-6164555 | MS.gene24556:intron | 35.0% |
| !! | TGGTTGTGATTTGTTGATAC+TGG | - | chr1.2:6164948-6164967 | MS.gene24556:intron | 35.0% |
| !!! | CTTTATTTTCCACACACTTG+TGG | + | chr1.2:6164685-6164704 | None:intergenic | 35.0% |
| !!! | TGTTTTGGCTGTTACTTTTG+CGG | - | chr1.2:6164090-6164109 | MS.gene24556:intron | 35.0% |
| AACGACTGGTACTCGTTTAT+GGG | + | chr1.2:6163896-6163915 | None:intergenic | 40.0% | |
| ATATTGCAGATGAGGAGACA+GGG | - | chr1.2:6164456-6164475 | MS.gene24556:intron | 40.0% | |
| ATCTTGGTTGGGCTTATGTT+GGG | - | chr1.2:6164125-6164144 | MS.gene24556:intron | 40.0% | |
| GATTCATCATTGTAAGCTCC+AGG | + | chr1.2:6166354-6166373 | None:intergenic | 40.0% | |
| GCACAAACAATTCTCTTAGC+AGG | + | chr1.2:6164058-6164077 | None:intergenic | 40.0% | |
| GTTCAAATTCCGCTATGCTA+AGG | + | chr1.2:6165601-6165620 | None:intergenic | 40.0% | |
| GTTGGTGTGAATGGGAAAAA+GGG | + | chr1.2:6163771-6163790 | None:intergenic | 40.0% | |
| TAACGACTGGTACTCGTTTA+TGG | + | chr1.2:6163897-6163916 | None:intergenic | 40.0% | |
| TATATTGCAGATGAGGAGAC+AGG | - | chr1.2:6164455-6164474 | MS.gene24556:intron | 40.0% | |
| TATCTTGGTTGGGCTTATGT+TGG | - | chr1.2:6164124-6164143 | MS.gene24556:intron | 40.0% | |
| TGTTGGTGTGAATGGGAAAA+AGG | + | chr1.2:6163772-6163791 | None:intergenic | 40.0% | |
| TTCAAGGTTAAGCCTGTACT+CGG | - | chr1.2:6166213-6166232 | MS.gene24556:CDS | 40.0% | |
| ! | CACTTTTACTTGTGTCTGTG+AGG | - | chr1.2:6165981-6166000 | MS.gene24556:CDS | 40.0% |
| ! | CGACATCGTTTCCATTTTCA+TGG | - | chr1.2:6163918-6163937 | MS.gene24556:intron | 40.0% |
| ! | CTTTGTTCTGTTGCTGTTGT+TGG | + | chr1.2:6163810-6163829 | None:intergenic | 40.0% |
| ! | TATTTTCCACACACTTGTGG+CGG | + | chr1.2:6164682-6164701 | None:intergenic | 40.0% |
| ! | TCTGTTGCTGTTGTTGGTAA+TGG | + | chr1.2:6163804-6163823 | None:intergenic | 40.0% |
| ! | TTTATGGGCTGCTGTTCTAA+CGG | + | chr1.2:6163881-6163900 | None:intergenic | 40.0% |
| ! | TTTTCCTTTGCCTTGCTTGT+GGG | - | chr1.2:6163989-6164008 | MS.gene24556:intron | 40.0% |
| !! | ATTGTTTGTGCTGCTTCTAG+TGG | - | chr1.2:6164067-6164086 | MS.gene24556:intron | 40.0% |
| !! | GTTGATGGAGGGAATAGTTT+TGG | + | chr1.2:6163743-6163762 | None:intergenic | 40.0% |
| !! | TGATGGAGGGAATAGTTTTG+GGG | + | chr1.2:6163741-6163760 | None:intergenic | 40.0% |
| !!! | CTGTTACTTTTGCGGTTGTT+AGG | - | chr1.2:6164098-6164117 | MS.gene24556:intron | 40.0% |
| AAAAGCCCACAACGAAAAGC+CGG | + | chr1.2:6163973-6163992 | None:intergenic | 45.0% | |
| AATGAAGAGAGCTCATGCAG+AGG | + | chr1.2:6164785-6164804 | None:intergenic | 45.0% | |
| CACGGGTCATCATCAAAACA+TGG | + | chr1.2:6165405-6165424 | None:intergenic | 45.0% | |
| CTTGTGTCTGTGAGGAATTG+CGG | - | chr1.2:6165989-6166008 | MS.gene24556:CDS | 45.0% | |
| GAAAATCACTCTAGTCGGTC+TGG | - | chr1.2:6166242-6166261 | MS.gene24556:CDS | 45.0% | |
| GAAACGATGTCGATAACGAC+TGG | + | chr1.2:6163910-6163929 | None:intergenic | 45.0% | |
| GACAGGACAAGGGTAATATC+TGG | + | chr1.2:6164742-6164761 | None:intergenic | 45.0% | |
| GCGGTTGTTAGGATGTATCT+TGG | - | chr1.2:6164109-6164128 | MS.gene24556:intron | 45.0% | |
| TTACCAGCAGCCCATGAAAA+TGG | + | chr1.2:6163932-6163951 | None:intergenic | 45.0% | |
| TTGGCACGTGATAGACTCTT+GGG | - | chr1.2:6165125-6165144 | MS.gene24556:intron | 45.0% | |
| TTTCCTTTGCCTTGCTTGTG+GGG | - | chr1.2:6163990-6164009 | MS.gene24556:intron | 45.0% | |
| TTTGGCACGTGATAGACTCT+TGG | - | chr1.2:6165124-6165143 | MS.gene24556:intron | 45.0% | |
| ! | CTTTTCCTTTGCCTTGCTTG+TGG | - | chr1.2:6163988-6164007 | MS.gene24556:intron | 45.0% |
| !! | TGCTGCTTCTAGTGGTGTTT+TGG | - | chr1.2:6164075-6164094 | MS.gene24556:intron | 45.0% |
| !! | TGGCTTGGTTTGGAACTGTT+GGG | - | chr1.2:6164020-6164039 | MS.gene24556:intron | 45.0% |
| !! | TTTCCATTTTCATGGGCTGC+TGG | - | chr1.2:6163926-6163945 | MS.gene24556:intron | 45.0% |
| !!! | TAGTTTTGGGGACATGCGTA+TGG | + | chr1.2:6163729-6163748 | None:intergenic | 45.0% |
| AAAGCCCACAACGAAAAGCC+GGG | + | chr1.2:6163972-6163991 | None:intergenic | 50.0% | |
| ACAGTTCCAAACCAAGCCAC+AGG | + | chr1.2:6164019-6164038 | None:intergenic | 50.0% | |
| GATATGGGTGAAGACTGCTG+AGG | - | chr1.2:6165100-6165119 | MS.gene24556:intron | 50.0% | |
| GGCTCACCACAAAATGCATC+TGG | + | chr1.2:6166393-6166412 | None:intergenic | 50.0% | |
| TAACCCCACAAGCAAGGCAA+AGG | + | chr1.2:6163996-6164015 | None:intergenic | 50.0% | |
| TGACCCGTGCTGTCAAATAG+CGG | - | chr1.2:6165416-6165435 | MS.gene24556:intron | 50.0% | |
| ! | AGTGCCGCTATTTGACAGCA+CGG | + | chr1.2:6165423-6165442 | None:intergenic | 50.0% |
| ! | GGTGAAGACTGCTGAGGTTT+TGG | - | chr1.2:6165106-6165125 | MS.gene24556:intron | 50.0% |
| ! | TCCAGGTATTGCTCGAACTC+CGG | + | chr1.2:6166337-6166356 | None:intergenic | 50.0% |
| !! | GGCTTGGTTTGGAACTGTTG+GGG | - | chr1.2:6164021-6164040 | MS.gene24556:intron | 50.0% |
| !! | GTGGCTTGGTTTGGAACTGT+TGG | - | chr1.2:6164019-6164038 | MS.gene24556:intron | 50.0% |
| ACCGGAGTTCGAGCAATACC+TGG | - | chr1.2:6166333-6166352 | MS.gene24556:CDS | 55.0% | |
| CACAGGTAACCCCACAAGCA+AGG | + | chr1.2:6164002-6164021 | None:intergenic | 55.0% | |
| CTTGCTTGTGGGGTTACCTG+TGG | - | chr1.2:6164000-6164019 | MS.gene24556:intron | 55.0% | |
| GAGGAGACAGGGTGGTATGA+TGG | - | chr1.2:6164467-6164486 | MS.gene24556:intron | 55.0% | |
| GGCTGCTGTTCTAACGGAAC+AGG | + | chr1.2:6163875-6163894 | None:intergenic | 55.0% | |
| TTGCAGATGAGGAGACAGGG+TGG | - | chr1.2:6164459-6164478 | MS.gene24556:intron | 55.0% | |
| TTGTGGGGTTACCTGTGGCT+TGG | - | chr1.2:6164005-6164024 | MS.gene24556:intron | 55.0% | |
| ! | GGTTCCCGGCTTTTCGTTGT+GGG | - | chr1.2:6163965-6163984 | MS.gene24556:intron | 55.0% |
| ! | GTGCCGCTATTTGACAGCAC+GGG | + | chr1.2:6165422-6165441 | None:intergenic | 55.0% |
| ! | TGGTTCCCGGCTTTTCGTTG+TGG | - | chr1.2:6163964-6163983 | MS.gene24556:intron | 55.0% |
| !! | GGGTTACCTGTGGCTTGGTT+TGG | - | chr1.2:6164010-6164029 | MS.gene24556:intron | 55.0% |
| AGTCGGTCTGGCAGCATGCT+TGG | - | chr1.2:6166254-6166273 | MS.gene24556:CDS | 60.0% | |
| GACAGGGTGGTATGATGGCC+AGG | - | chr1.2:6164472-6164491 | MS.gene24556:intron | 60.0% | |
| TGCAGTCCGCCACAAGTGTG+TGG | - | chr1.2:6164673-6164692 | MS.gene24556:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 6163713 | 6166428 | 6163713 | ID=MS.gene24556 |
| chr1.2 | mRNA | 6163713 | 6166428 | 6163713 | ID=MS.gene24556.t1;Parent=MS.gene24556 |
| chr1.2 | exon | 6165961 | 6166428 | 6165961 | ID=MS.gene24556.t1.exon1;Parent=MS.gene24556.t1 |
| chr1.2 | CDS | 6165961 | 6166428 | 6165961 | ID=cds.MS.gene24556.t1;Parent=MS.gene24556.t1 |
| chr1.2 | exon | 6165648 | 6165716 | 6165648 | ID=MS.gene24556.t1.exon2;Parent=MS.gene24556.t1 |
| chr1.2 | CDS | 6165648 | 6165716 | 6165648 | ID=cds.MS.gene24556.t1;Parent=MS.gene24556.t1 |
| chr1.2 | exon | 6164984 | 6165040 | 6164984 | ID=MS.gene24556.t1.exon3;Parent=MS.gene24556.t1 |
| chr1.2 | CDS | 6164984 | 6165040 | 6164984 | ID=cds.MS.gene24556.t1;Parent=MS.gene24556.t1 |
| chr1.2 | exon | 6163713 | 6163922 | 6163713 | ID=MS.gene24556.t1.exon4;Parent=MS.gene24556.t1 |
| chr1.2 | CDS | 6163713 | 6163922 | 6163713 | ID=cds.MS.gene24556.t1;Parent=MS.gene24556.t1 |
| Gene Sequence |
| Protein sequence |
