Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24830.t1 | XP_013458421.2 | 98.9 | 369 | 3 | 1 | 1 | 369 | 1 | 368 | 2.30E-208 | 734.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24830.t1 | Q6AWY6 | 39.2 | 365 | 173 | 13 | 9 | 363 | 53 | 378 | 1.0e-42 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24830.t1 | A0A396IG50 | 98.9 | 369 | 3 | 1 | 1 | 369 | 1 | 368 | 1.7e-208 | 734.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24830.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049622 | MS.gene24830 | 0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene24830 | 0.826384 | 2.79E-54 | -1.69E-46 |
| MS.gene051629 | MS.gene24830 | 0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene24830 | 0.992213 | 5.84E-192 | -1.69E-46 |
| MS.gene051955 | MS.gene24830 | 0.8326 | 8.62E-56 | -1.69E-46 |
| MS.gene052367 | MS.gene24830 | 0.829755 | 4.31E-55 | -1.69E-46 |
| MS.gene053173 | MS.gene24830 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene24830 | 0.811375 | 7.23E-51 | -1.69E-46 |
| MS.gene053416 | MS.gene24830 | 0.814137 | 1.80E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene24830 | 0.820752 | 5.81E-53 | -1.69E-46 |
| MS.gene054551 | MS.gene24830 | 0.814814 | 1.27E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene24830 | 0.82714 | 1.84E-54 | -1.69E-46 |
| MS.gene054885 | MS.gene24830 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene24830 | 0.838789 | 2.33E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene24830 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene24830 | 0.840622 | 7.78E-58 | -1.69E-46 |
| MS.gene056041 | MS.gene24830 | 0.850716 | 1.42E-60 | -1.69E-46 |
| MS.gene056042 | MS.gene24830 | 0.817064 | 4.00E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene24830 | 0.826469 | 2.67E-54 | -1.69E-46 |
| MS.gene056526 | MS.gene24830 | 0.833718 | 4.54E-56 | -1.69E-46 |
| MS.gene056528 | MS.gene24830 | 0.838636 | 2.56E-57 | -1.69E-46 |
| MS.gene057458 | MS.gene24830 | 0.853605 | 2.14E-61 | -1.69E-46 |
| MS.gene058196 | MS.gene24830 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene24830 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene058198 | MS.gene24830 | 0.802409 | 5.69E-49 | -1.69E-46 |
| MS.gene058827 | MS.gene24830 | 0.821215 | 4.55E-53 | -1.69E-46 |
| MS.gene058853 | MS.gene24830 | 0.831177 | 1.94E-55 | -1.69E-46 |
| MS.gene059553 | MS.gene24830 | 0.82055 | 6.47E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene24830 | 0.856894 | 2.36E-62 | -1.69E-46 |
| MS.gene060565 | MS.gene24830 | 0.859936 | 2.93E-63 | -1.69E-46 |
| MS.gene06093 | MS.gene24830 | 0.843976 | 1.01E-58 | -1.69E-46 |
| MS.gene061099 | MS.gene24830 | 0.83344 | 5.33E-56 | -1.69E-46 |
| MS.gene061260 | MS.gene24830 | 0.835257 | 1.86E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24830.t1 | MTR_4g125490 | 98.910 | 367 | 3 | 1 | 1 | 367 | 1 | 366 | 0.0 | 750 |
| MS.gene24830.t1 | MTR_2g041430 | 61.680 | 381 | 103 | 12 | 5 | 369 | 3 | 356 | 7.08e-140 | 402 |
| MS.gene24830.t1 | MTR_2g041430 | 61.804 | 377 | 101 | 12 | 5 | 365 | 3 | 352 | 2.99e-138 | 397 |
| MS.gene24830.t1 | MTR_2g041430 | 61.804 | 377 | 101 | 12 | 5 | 365 | 3 | 352 | 3.16e-138 | 397 |
| MS.gene24830.t1 | MTR_8g020560 | 42.740 | 365 | 155 | 16 | 1 | 338 | 1 | 338 | 1.17e-68 | 219 |
| MS.gene24830.t1 | MTR_0001s0490 | 39.266 | 354 | 147 | 14 | 9 | 352 | 25 | 320 | 2.62e-55 | 185 |
| MS.gene24830.t1 | MTR_5g027030 | 60.550 | 109 | 31 | 2 | 9 | 117 | 16 | 112 | 1.31e-39 | 143 |
| MS.gene24830.t1 | MTR_1g017490 | 56.897 | 116 | 44 | 2 | 7 | 117 | 9 | 123 | 1.43e-39 | 147 |
| MS.gene24830.t1 | MTR_1g017490 | 56.897 | 116 | 44 | 2 | 7 | 117 | 142 | 256 | 1.88e-39 | 148 |
| MS.gene24830.t1 | MTR_7g104050 | 53.383 | 133 | 41 | 4 | 6 | 124 | 68 | 193 | 5.86e-37 | 137 |
| MS.gene24830.t1 | MTR_7g104050 | 53.383 | 133 | 41 | 4 | 6 | 124 | 68 | 193 | 7.19e-37 | 137 |
| MS.gene24830.t1 | MTR_3g092330 | 48.739 | 119 | 42 | 4 | 9 | 127 | 113 | 212 | 4.13e-27 | 112 |
| MS.gene24830.t1 | MTR_8g035910 | 45.536 | 112 | 47 | 3 | 6 | 117 | 46 | 143 | 4.98e-21 | 94.4 |
| MS.gene24830.t1 | MTR_8g035910 | 43.750 | 80 | 34 | 2 | 73 | 152 | 297 | 365 | 4.99e-13 | 70.5 |
| MS.gene24830.t1 | MTR_8g035640 | 64.103 | 39 | 14 | 0 | 73 | 111 | 51 | 89 | 1.66e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24830.t1 | AT3G13960 | 71.053 | 114 | 27 | 3 | 7 | 117 | 14 | 124 | 4.08e-52 | 178 |
| MS.gene24830.t1 | AT2G06200 | 66.667 | 120 | 29 | 2 | 7 | 115 | 43 | 162 | 3.48e-48 | 164 |
| MS.gene24830.t1 | AT2G06200 | 66.667 | 120 | 29 | 2 | 7 | 115 | 4 | 123 | 4.55e-48 | 163 |
| MS.gene24830.t1 | AT4G37740 | 55.118 | 127 | 52 | 3 | 9 | 134 | 164 | 286 | 3.54e-41 | 152 |
| MS.gene24830.t1 | AT2G36400 | 57.377 | 122 | 43 | 3 | 10 | 125 | 77 | 195 | 6.64e-37 | 138 |
| MS.gene24830.t1 | AT2G22840 | 57.143 | 112 | 44 | 2 | 7 | 117 | 131 | 239 | 1.29e-34 | 134 |
| MS.gene24830.t1 | AT3G52910 | 53.390 | 118 | 39 | 3 | 10 | 117 | 83 | 194 | 3.85e-33 | 127 |
| MS.gene24830.t1 | AT5G53660 | 50.000 | 110 | 38 | 2 | 8 | 117 | 58 | 150 | 6.34e-27 | 110 |
| MS.gene24830.t1 | AT2G06200 | 92.157 | 51 | 2 | 1 | 67 | 115 | 1 | 51 | 5.60e-26 | 102 |
| MS.gene24830.t1 | AT4G24150 | 42.149 | 121 | 64 | 2 | 2 | 117 | 104 | 223 | 7.75e-23 | 99.4 |
| MS.gene24830.t1 | AT4G24150 | 42.149 | 121 | 64 | 2 | 2 | 117 | 142 | 261 | 1.33e-22 | 99.4 |
| MS.gene24830.t1 | AT4G24150 | 36.986 | 146 | 61 | 3 | 2 | 117 | 142 | 286 | 8.73e-21 | 94.0 |
| MS.gene24830.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 1.73e-18 | 85.5 |
| MS.gene24830.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 17 | 127 | 6.59e-18 | 85.1 |
| MS.gene24830.t1 | AT2G45480 | 41.935 | 93 | 42 | 3 | 70 | 155 | 301 | 388 | 8.78e-13 | 69.7 |
| MS.gene24830.t1 | AT2G45480 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 6.91e-18 | 85.1 |
| MS.gene24830.t1 | AT2G45480 | 41.935 | 93 | 42 | 3 | 70 | 155 | 303 | 390 | 9.08e-13 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGTTTCTGCTGCTTT+TGG | 0.148849 | 8.4:+9407250 | None:intergenic |
| TGAAGGAACAGGTATGTTTA+TGG | 0.231611 | 8.4:-9407587 | MS.gene24830:intron |
| TGCCACTGAGTTGGAGTAAA+AGG | 0.276188 | 8.4:+9408663 | None:intergenic |
| CTTCTGCACCTCCCTGGCTC+TGG | 0.278943 | 8.4:+9408375 | None:intergenic |
| CCCTTGTTTCTTGACAATAC+TGG | 0.290985 | 8.4:-9408006 | MS.gene24830:CDS |
| CAGAAACTCATGGCTTGATT+TGG | 0.299180 | 8.4:-9407240 | MS.gene24830:CDS |
| GCTTTCTTCACTGAACCTTC+TGG | 0.302685 | 8.4:-9407539 | MS.gene24830:CDS |
| CTTTCACAGTACTTTGAATC+TGG | 0.319625 | 8.4:+9408312 | None:intergenic |
| AAAAGAGGAAGAGGAGCTTA+TGG | 0.356828 | 8.4:+9407457 | None:intergenic |
| CTTCTTCAATGGATGATTCA+TGG | 0.368355 | 8.4:-9407496 | MS.gene24830:CDS |
| TTCTGCACCTCCCTGGCTCT+GGG | 0.368474 | 8.4:+9408376 | None:intergenic |
| ATCTACAAATACATGGCTTC+TGG | 0.368517 | 8.4:-9408618 | MS.gene24830:CDS |
| TTGTCTTGAAATGAGAAGTT+AGG | 0.391585 | 8.4:+9408036 | None:intergenic |
| AGAGGAAAGGGTGGTTAAGA+TGG | 0.391821 | 8.4:+9408082 | None:intergenic |
| GAACTATTTACCAATGGGAT+TGG | 0.400450 | 8.4:-9408412 | MS.gene24830:CDS |
| TTTAAACAGAGAAATTGTTC+TGG | 0.401538 | 8.4:-9407437 | MS.gene24830:CDS |
| TTCATCGTTTCTTTGATGAA+TGG | 0.411092 | 8.4:-9407277 | MS.gene24830:CDS |
| AACTATTTACCAATGGGATT+GGG | 0.420553 | 8.4:-9408411 | MS.gene24830:CDS |
| CCATTTACCTCGTTGGTTTG+TGG | 0.423824 | 8.4:+9407145 | None:intergenic |
| GCCTTGAGGATGGAGGGTTA+TGG | 0.442680 | 8.4:+9408058 | None:intergenic |
| AAGTTTATCAGCTTCTTCAA+TGG | 0.445043 | 8.4:-9407507 | MS.gene24830:CDS |
| GAGGGTTATGGTAGAGGAAA+GGG | 0.446918 | 8.4:+9408070 | None:intergenic |
| TTGATAGTGAGTAGAAGATC+AGG | 0.446923 | 8.4:+9408582 | None:intergenic |
| AAGCATAAGAAGAGTGTTGA+GGG | 0.452542 | 8.4:+9408109 | None:intergenic |
| TCTGTTCTTCTGCACCTCCC+TGG | 0.454328 | 8.4:+9408369 | None:intergenic |
| ACAATTTCTCTGTTTAAAAG+AGG | 0.457057 | 8.4:+9407442 | None:intergenic |
| GAGGAAAGGGTGGTTAAGAT+GGG | 0.457253 | 8.4:+9408083 | None:intergenic |
| GAGTAGAAGATCAGGAGGAA+TGG | 0.465599 | 8.4:+9408590 | None:intergenic |
| GTAAGAGTACTCATTGTCAT+TGG | 0.465700 | 8.4:+9407409 | None:intergenic |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 8.4:+9408268 | None:intergenic |
| GGATGGAACTATTTACCAAT+GGG | 0.479254 | 8.4:-9408417 | MS.gene24830:CDS |
| CAATGATGAATGGAAGAAAC+AGG | 0.479723 | 8.4:-9408689 | MS.gene24830:CDS |
| GAAGAACAGATGGAAAGAAA+TGG | 0.480263 | 8.4:-9408356 | MS.gene24830:CDS |
| ATAACAACAACACTGATTGC+AGG | 0.480287 | 8.4:-9407969 | MS.gene24830:intron |
| AAGAAGAGTGTTGAGGGTAA+TGG | 0.482978 | 8.4:+9408115 | None:intergenic |
| GATCAAGGTTGTTACATCTC+AGG | 0.490399 | 8.4:-9407350 | MS.gene24830:CDS |
| TCTCTGTTTAAAAGAGGAAG+AGG | 0.498513 | 8.4:+9407448 | None:intergenic |
| TAACAAACAACAATGATGAA+TGG | 0.501615 | 8.4:-9408699 | None:intergenic |
| AGGATGGAGGGTTATGGTAG+AGG | 0.503413 | 8.4:+9408064 | None:intergenic |
| GTGTGGTGCATGCAGTTGGA+TGG | 0.510680 | 8.4:-9408434 | MS.gene24830:intron |
| TCAAGCTCTTGCCACTGAGT+TGG | 0.513392 | 8.4:+9408654 | None:intergenic |
| TTATGGACTGAAAGAGGAGG+TGG | 0.522907 | 8.4:-9407570 | MS.gene24830:CDS |
| GAAGAGGAGCTTATGGTAAG+TGG | 0.526833 | 8.4:+9407464 | None:intergenic |
| AAGATTGTTGAAGTAGCAGC+AGG | 0.534940 | 8.4:+9408216 | None:intergenic |
| ATCATGAGAAGATGTAGGAA+TGG | 0.536076 | 8.4:+9407184 | None:intergenic |
| ACCAGTATTGTCAAGAAACA+AGG | 0.541001 | 8.4:+9408005 | None:intergenic |
| AAACAACCACAGCAAGATCA+AGG | 0.541674 | 8.4:-9407365 | MS.gene24830:CDS |
| AGAGAAACCATTTACCTCGT+TGG | 0.542197 | 8.4:+9407138 | None:intergenic |
| GTGAAATCATGAGAAGATGT+AGG | 0.543173 | 8.4:+9407179 | None:intergenic |
| GTGAAAGGCACATGCATAGA+GGG | 0.547205 | 8.4:-9408296 | MS.gene24830:CDS |
| GAAGCATAAGAAGAGTGTTG+AGG | 0.548399 | 8.4:+9408108 | None:intergenic |
| GGAGGGTTATGGTAGAGGAA+AGG | 0.556801 | 8.4:+9408069 | None:intergenic |
| GAACAGATGGAAAGAAATGG+AGG | 0.559737 | 8.4:-9408353 | MS.gene24830:CDS |
| TGGATGGAACTATTTACCAA+TGG | 0.564553 | 8.4:-9408418 | MS.gene24830:CDS |
| GAAGAAACATTCATGAAACA+TGG | 0.569282 | 8.4:-9407323 | MS.gene24830:CDS |
| ATAGTGAGTAGAAGATCAGG+AGG | 0.571348 | 8.4:+9408585 | None:intergenic |
| CAGATTCAAAGTACTGTGAA+AGG | 0.571794 | 8.4:-9408311 | MS.gene24830:CDS |
| GGGAGGTGCAGAAGAACAGA+TGG | 0.577454 | 8.4:-9408366 | MS.gene24830:CDS |
| AAACTTCTTATAGTTCCAGA+AGG | 0.579842 | 8.4:+9407524 | None:intergenic |
| AAGTTAGGCCTTGAGGATGG+AGG | 0.587194 | 8.4:+9408051 | None:intergenic |
| ACCATAACCCTCCATCCTCA+AGG | 0.592083 | 8.4:-9408059 | MS.gene24830:CDS |
| AAATGAGAAGTTAGGCCTTG+AGG | 0.594153 | 8.4:+9408044 | None:intergenic |
| AGTTAGGCCTTGAGGATGGA+GGG | 0.597805 | 8.4:+9408052 | None:intergenic |
| GTATGTTTATGGACTGAAAG+AGG | 0.601366 | 8.4:-9407576 | MS.gene24830:CDS |
| AAGAAACATTCATGAAACAT+GGG | 0.603745 | 8.4:-9407322 | MS.gene24830:CDS |
| GAGAAGTTAGGCCTTGAGGA+TGG | 0.604526 | 8.4:+9408048 | None:intergenic |
| CCAAAAGCAGCAGAAACTCA+TGG | 0.605608 | 8.4:-9407250 | MS.gene24830:CDS |
| AGCTCTTATCTACAAATACA+TGG | 0.606523 | 8.4:-9408625 | MS.gene24830:CDS |
| AGTGTTGTTGTTATTGTGAG+AGG | 0.610925 | 8.4:+9407978 | None:intergenic |
| GGAGATTGAAAGCTGAGTGG+TGG | 0.613550 | 8.4:+9407205 | None:intergenic |
| TAACAACCTTGATCTTGCTG+TGG | 0.626299 | 8.4:+9407359 | None:intergenic |
| TGTGAAAGGCACATGCATAG+AGG | 0.626931 | 8.4:-9408297 | MS.gene24830:CDS |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 8.4:-9408271 | MS.gene24830:CDS |
| TGTTTATGGACTGAAAGAGG+AGG | 0.650765 | 8.4:-9407573 | MS.gene24830:CDS |
| CCAGTATTGTCAAGAAACAA+GGG | 0.652005 | 8.4:+9408006 | None:intergenic |
| AAATAGACCCAGAGCCAGGG+AGG | 0.659120 | 8.4:-9408383 | MS.gene24830:CDS |
| GGTTATGGTAGAGGAAAGGG+TGG | 0.659870 | 8.4:+9408073 | None:intergenic |
| TTTAGTTCCACAAACCAACG+AGG | 0.729736 | 8.4:-9407152 | MS.gene24830:intron |
| AATGGAGATTGAAAGCTGAG+TGG | 0.781428 | 8.4:+9407202 | None:intergenic |
| TTACAGTGTTGAGACTGATG+AGG | 0.793602 | 8.4:+9408528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATGGTAAAAATTATTAT+TGG | + | chr8.4:9408499-9408518 | None:intergenic | 15.0% |
| !! | TAATTGAATGTAAATTATCA+TGG | - | chr8.4:9408634-9408653 | MS.gene24830:CDS | 15.0% |
| !! | TATATATAGTCATTCATATA+TGG | + | chr8.4:9406942-9406961 | None:intergenic | 15.0% |
| !!! | AGTTTTTCTCAAATTATTAT+CGG | + | chr8.4:9408436-9408455 | None:intergenic | 15.0% |
| !! | AGAGAACTTATAAAAATAAG+TGG | - | chr8.4:9407651-9407670 | MS.gene24830:intron | 20.0% |
| !!! | CTTATCGATTATAAACTTAT+AGG | + | chr8.4:9407593-9407612 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+TGG | + | chr8.4:9407521-9407540 | None:intergenic | 20.0% |
| !!! | TTTATGAAAGATTCTCTTTT+TGG | - | chr8.4:9407804-9407823 | MS.gene24830:intron | 20.0% |
| ! | AAGAAACATTCATGAAACAT+GGG | - | chr8.4:9408107-9408126 | MS.gene24830:CDS | 25.0% |
| ! | ACAATTTCTCTGTTTAAAAG+AGG | + | chr8.4:9407990-9408009 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACACATATTT+AGG | - | chr8.4:9407495-9407514 | MS.gene24830:CDS | 25.0% |
| ! | TGAGTTTCGCAAATTATTAT+TGG | + | chr8.4:9408614-9408633 | None:intergenic | 25.0% |
| ! | TTTAAACAGAGAAATTGTTC+TGG | - | chr8.4:9407992-9408011 | MS.gene24830:CDS | 25.0% |
| AAACGATGAAAAATCTTCTG+AGG | + | chr8.4:9408142-9408161 | None:intergenic | 30.0% | |
| AAACTTCTTATAGTTCCAGA+AGG | + | chr8.4:9407908-9407927 | None:intergenic | 30.0% | |
| AACTATTTACCAATGGGATT+GGG | - | chr8.4:9407018-9407037 | MS.gene24830:intron | 30.0% | |
| AAGTTTATCAGCTTCTTCAA+TGG | - | chr8.4:9407922-9407941 | MS.gene24830:intron | 30.0% | |
| AGCTCTTATCTACAAATACA+TGG | - | chr8.4:9406804-9406823 | MS.gene24830:intron | 30.0% | |
| AGTGATTAGTGATTTCTCAT+TGG | - | chr8.4:9408660-9408679 | MS.gene24830:CDS | 30.0% | |
| GAAGAAACATTCATGAAACA+TGG | - | chr8.4:9408106-9408125 | MS.gene24830:CDS | 30.0% | |
| TCAAATAGTCCAATCCAAAA+AGG | - | chr8.4:9407743-9407762 | MS.gene24830:intron | 30.0% | |
| TTACAAACACATACACAACA+CGG | - | chr8.4:9408577-9408596 | MS.gene24830:CDS | 30.0% | |
| TTCATCGTTTCTTTGATGAA+TGG | - | chr8.4:9408152-9408171 | MS.gene24830:CDS | 30.0% | |
| TTGTCTTGAAATGAGAAGTT+AGG | + | chr8.4:9407396-9407415 | None:intergenic | 30.0% | |
| TTTCCTCAAATTATCACCTA+TGG | + | chr8.4:9408373-9408392 | None:intergenic | 30.0% | |
| ! | GGTATTGTTGTTATCTTTGA+AGG | - | chr8.4:9407825-9407844 | MS.gene24830:intron | 30.0% |
| ! | TATGTATGCACTTGTTGATT+TGG | - | chr8.4:9406973-9406992 | MS.gene24830:intron | 30.0% |
| !! | ATTTCTCATTGGCTTGAATT+TGG | - | chr8.4:9408671-9408690 | MS.gene24830:CDS | 30.0% |
| AACATGGCCTAAATATGTGT+TGG | + | chr8.4:9407505-9407524 | None:intergenic | 35.0% | |
| ACCAGTATTGTCAAGAAACA+AGG | + | chr8.4:9407427-9407446 | None:intergenic | 35.0% | |
| ATCATGAGAAGATGTAGGAA+TGG | + | chr8.4:9408248-9408267 | None:intergenic | 35.0% | |
| ATCTACAAATACATGGCTTC+TGG | - | chr8.4:9406811-9406830 | MS.gene24830:intron | 35.0% | |
| CAATCCAAAAAGGTTCATGA+TGG | - | chr8.4:9407753-9407772 | MS.gene24830:intron | 35.0% | |
| CCAGTATTGTCAAGAAACAA+GGG | + | chr8.4:9407426-9407445 | None:intergenic | 35.0% | |
| CTTCTTCAATGGATGATTCA+TGG | - | chr8.4:9407933-9407952 | MS.gene24830:intron | 35.0% | |
| CTTTCACAGTACTTTGAATC+TGG | + | chr8.4:9407120-9407139 | None:intergenic | 35.0% | |
| GAACTATTTACCAATGGGAT+TGG | - | chr8.4:9407017-9407036 | MS.gene24830:intron | 35.0% | |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr8.4:9407073-9407092 | MS.gene24830:intron | 35.0% | |
| GGATGGAACTATTTACCAAT+GGG | - | chr8.4:9407012-9407031 | MS.gene24830:intron | 35.0% | |
| GTGAAATCATGAGAAGATGT+AGG | + | chr8.4:9408253-9408272 | None:intergenic | 35.0% | |
| TCTCTGTTTAAAAGAGGAAG+AGG | + | chr8.4:9407984-9408003 | None:intergenic | 35.0% | |
| TGAAGGAACAGGTATGTTTA+TGG | - | chr8.4:9407842-9407861 | MS.gene24830:intron | 35.0% | |
| TGGATGGAACTATTTACCAA+TGG | - | chr8.4:9407011-9407030 | MS.gene24830:intron | 35.0% | |
| ! | AGTGTTGTTGTTATTGTGAG+AGG | + | chr8.4:9407454-9407473 | None:intergenic | 35.0% |
| ! | ATAACAACAACACTGATTGC+AGG | - | chr8.4:9407460-9407479 | MS.gene24830:CDS | 35.0% |
| ! | ATTTTTCTTCCCAATCCCAT+TGG | + | chr8.4:9407030-9407049 | None:intergenic | 35.0% |
| ! | CATCATGAACCTTTTTGGAT+TGG | + | chr8.4:9407755-9407774 | None:intergenic | 35.0% |
| ! | GTATGTTTATGGACTGAAAG+AGG | - | chr8.4:9407853-9407872 | MS.gene24830:intron | 35.0% |
| ! | GTTGTTATCTTTGAAGGAAC+AGG | - | chr8.4:9407831-9407850 | MS.gene24830:intron | 35.0% |
| !! | AAGCATAAGAAGAGTGTTGA+GGG | + | chr8.4:9407323-9407342 | None:intergenic | 35.0% |
| !! | ATTATCGGTGTTGATGTGTT+TGG | + | chr8.4:9408421-9408440 | None:intergenic | 35.0% |
| !! | CAGATTCAAAGTACTGTGAA+AGG | - | chr8.4:9407118-9407137 | MS.gene24830:intron | 35.0% |
| !! | GTAAGAGTACTCATTGTCAT+TGG | + | chr8.4:9408023-9408042 | None:intergenic | 35.0% |
| !! | GTTGTTTTCAAAACTTCCAC+AGG | + | chr8.4:9407177-9407196 | None:intergenic | 35.0% |
| !! | TTGATAGTGAGTAGAAGATC+AGG | + | chr8.4:9406850-9406869 | None:intergenic | 35.0% |
| !!! | CTTGAATTTGGTTTTGCAGA+TGG | - | chr8.4:9408683-9408702 | MS.gene24830:CDS | 35.0% |
| AAAAGAGGAAGAGGAGCTTA+TGG | + | chr8.4:9407975-9407994 | None:intergenic | 40.0% | |
| AAACAACCACAGCAAGATCA+AGG | - | chr8.4:9408064-9408083 | MS.gene24830:CDS | 40.0% | |
| AAATGAGAAGTTAGGCCTTG+AGG | + | chr8.4:9407388-9407407 | None:intergenic | 40.0% | |
| AAGATTGTTGAAGTAGCAGC+AGG | + | chr8.4:9407216-9407235 | None:intergenic | 40.0% | |
| AAGCTATCGTTGAGACTGAA+TGG | - | chr8.4:9407623-9407642 | MS.gene24830:intron | 40.0% | |
| AATGGAGATTGAAAGCTGAG+TGG | + | chr8.4:9408230-9408249 | None:intergenic | 40.0% | |
| AGAGAAACCATTTACCTCGT+TGG | + | chr8.4:9408294-9408313 | None:intergenic | 40.0% | |
| ATAGTGAGTAGAAGATCAGG+AGG | + | chr8.4:9406847-9406866 | None:intergenic | 40.0% | |
| CAGAAACTCATGGCTTGATT+TGG | - | chr8.4:9408189-9408208 | MS.gene24830:CDS | 40.0% | |
| GAACAGATGGAAAGAAATGG+AGG | - | chr8.4:9407076-9407095 | MS.gene24830:intron | 40.0% | |
| GATCAAGGTTGTTACATCTC+AGG | - | chr8.4:9408079-9408098 | MS.gene24830:CDS | 40.0% | |
| TAACAACCTTGATCTTGCTG+TGG | + | chr8.4:9408073-9408092 | None:intergenic | 40.0% | |
| TCGCCATAGGTGATAATTTG+AGG | - | chr8.4:9408367-9408386 | MS.gene24830:CDS | 40.0% | |
| TGACTAGAGCATGTTGACAA+TGG | + | chr8.4:9408515-9408534 | None:intergenic | 40.0% | |
| ! | AGCACCATCATGAACCTTTT+TGG | + | chr8.4:9407760-9407779 | None:intergenic | 40.0% |
| ! | ATCCTTTTACTCCAACTCAG+TGG | - | chr8.4:9406764-9406783 | MS.gene24830:intron | 40.0% |
| ! | CCCTTGTTTCTTGACAATAC+TGG | - | chr8.4:9407423-9407442 | MS.gene24830:CDS | 40.0% |
| ! | TGTTTATGGACTGAAAGAGG+AGG | - | chr8.4:9407856-9407875 | MS.gene24830:intron | 40.0% |
| ! | TTACAGTGTTGAGACTGATG+AGG | + | chr8.4:9406904-9406923 | None:intergenic | 40.0% |
| ! | TTTAGTTCCACAAACCAACG+AGG | - | chr8.4:9408277-9408296 | MS.gene24830:CDS | 40.0% |
| !! | AAGAAGAGTGTTGAGGGTAA+TGG | + | chr8.4:9407317-9407336 | None:intergenic | 40.0% |
| !! | ATGCACTTGTTGATTTGGTG+TGG | - | chr8.4:9406978-9406997 | MS.gene24830:intron | 40.0% |
| !! | GAAGCATAAGAAGAGTGTTG+AGG | + | chr8.4:9407324-9407343 | None:intergenic | 40.0% |
| !!! | CATGAGTTTCTGCTGCTTTT+GGG | + | chr8.4:9408181-9408200 | None:intergenic | 40.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr8.4:9407158-9407177 | MS.gene24830:CDS | 45.0% | |
| AGAAAAATAGACCCAGAGCC+AGG | - | chr8.4:9407042-9407061 | MS.gene24830:intron | 45.0% | |
| AGAGGAAAGGGTGGTTAAGA+TGG | + | chr8.4:9407350-9407369 | None:intergenic | 45.0% | |
| CCAAAAGCAGCAGAAACTCA+TGG | - | chr8.4:9408179-9408198 | MS.gene24830:CDS | 45.0% | |
| CCACAAACCAACGAGGTAAA+TGG | - | chr8.4:9408284-9408303 | MS.gene24830:CDS | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr8.4:9407164-9407183 | None:intergenic | 45.0% | |
| GAAAAATAGACCCAGAGCCA+GGG | - | chr8.4:9407043-9407062 | MS.gene24830:intron | 45.0% | |
| GAAGAGGAGCTTATGGTAAG+TGG | + | chr8.4:9407968-9407987 | None:intergenic | 45.0% | |
| GAGGAAAGGGTGGTTAAGAT+GGG | + | chr8.4:9407349-9407368 | None:intergenic | 45.0% | |
| GAGGGTTATGGTAGAGGAAA+GGG | + | chr8.4:9407362-9407381 | None:intergenic | 45.0% | |
| GAGTAGAAGATCAGGAGGAA+TGG | + | chr8.4:9406842-9406861 | None:intergenic | 45.0% | |
| GCTTTCTTCACTGAACCTTC+TGG | - | chr8.4:9407890-9407909 | MS.gene24830:intron | 45.0% | |
| TGCTTCAAAGCTATGAGCCA+CGG | + | chr8.4:9408554-9408573 | None:intergenic | 45.0% | |
| ! | GTGAAAGGCACATGCATAGA+GGG | - | chr8.4:9407133-9407152 | MS.gene24830:intron | 45.0% |
| ! | TGCCACTGAGTTGGAGTAAA+AGG | + | chr8.4:9406769-9406788 | None:intergenic | 45.0% |
| ! | TGTGAAAGGCACATGCATAG+AGG | - | chr8.4:9407132-9407151 | MS.gene24830:intron | 45.0% |
| ! | TTATGGACTGAAAGAGGAGG+TGG | - | chr8.4:9407859-9407878 | MS.gene24830:intron | 45.0% |
| !! | CCATTTACCTCGTTGGTTTG+TGG | + | chr8.4:9408287-9408306 | None:intergenic | 45.0% |
| !!! | CCATGAGTTTCTGCTGCTTT+TGG | + | chr8.4:9408182-9408201 | None:intergenic | 45.0% |
| !!! | ATAAACATTTTAATAAAAAA+AGG | + | chr8.4:9407789-9407808 | None:intergenic | 5.0% |
| AAGTTAGGCCTTGAGGATGG+AGG | + | chr8.4:9407381-9407400 | None:intergenic | 50.0% | |
| ACCATAACCCTCCATCCTCA+AGG | - | chr8.4:9407370-9407389 | MS.gene24830:CDS | 50.0% | |
| AGGATGGAGGGTTATGGTAG+AGG | + | chr8.4:9407368-9407387 | None:intergenic | 50.0% | |
| AGTTAGGCCTTGAGGATGGA+GGG | + | chr8.4:9407380-9407399 | None:intergenic | 50.0% | |
| GAGAAGTTAGGCCTTGAGGA+TGG | + | chr8.4:9407384-9407403 | None:intergenic | 50.0% | |
| GGAGATTGAAAGCTGAGTGG+TGG | + | chr8.4:9408227-9408246 | None:intergenic | 50.0% | |
| GGAGGGTTATGGTAGAGGAA+AGG | + | chr8.4:9407363-9407382 | None:intergenic | 50.0% | |
| GGTTATGGTAGAGGAAAGGG+TGG | + | chr8.4:9407359-9407378 | None:intergenic | 50.0% | |
| TCAAGCTCTTGCCACTGAGT+TGG | + | chr8.4:9406778-9406797 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGGTGCATGCAGT+TGG | - | chr8.4:9406991-9407010 | MS.gene24830:intron | 50.0% |
| !!! | GAGTTTCTGCTGCTTTTGGG+TGG | + | chr8.4:9408178-9408197 | None:intergenic | 50.0% |
| AAATAGACCCAGAGCCAGGG+AGG | - | chr8.4:9407046-9407065 | MS.gene24830:intron | 55.0% | |
| CGACACTGACACATCGCCAT+AGG | - | chr8.4:9408354-9408373 | MS.gene24830:CDS | 55.0% | |
| GCCTTGAGGATGGAGGGTTA+TGG | + | chr8.4:9407374-9407393 | None:intergenic | 55.0% | |
| GCTCTAGTCAGTGTTGTGCC+TGG | - | chr8.4:9408525-9408544 | MS.gene24830:intron | 55.0% | |
| GTGTGGTGCATGCAGTTGGA+TGG | - | chr8.4:9406995-9407014 | MS.gene24830:intron | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | + | chr8.4:9407063-9407082 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | - | chr8.4:9407063-9407082 | MS.gene24830:intron | 55.0% |
| AGCTATGAGCCACGGACACC+AGG | + | chr8.4:9408546-9408565 | None:intergenic | 60.0% | |
| AGTGTTGTGCCTGGTGTCCG+TGG | - | chr8.4:9408534-9408553 | MS.gene24830:CDS | 60.0% | |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | + | chr8.4:9407056-9407075 | None:intergenic | 60.0% |
| CTTCTGCACCTCCCTGGCTC+TGG | + | chr8.4:9407057-9407076 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9406742 | 9408709 | 9406742 | ID=MS.gene24830 |
| chr8.4 | mRNA | 9406742 | 9408709 | 9406742 | ID=MS.gene24830.t1;Parent=MS.gene24830 |
| chr8.4 | exon | 9408532 | 9408709 | 9408532 | ID=MS.gene24830.t1.exon1;Parent=MS.gene24830.t1 |
| chr8.4 | CDS | 9408532 | 9408709 | 9408532 | ID=cds.MS.gene24830.t1;Parent=MS.gene24830.t1 |
| chr8.4 | exon | 9407970 | 9408441 | 9407970 | ID=MS.gene24830.t1.exon2;Parent=MS.gene24830.t1 |
| chr8.4 | CDS | 9407970 | 9408441 | 9407970 | ID=cds.MS.gene24830.t1;Parent=MS.gene24830.t1 |
| chr8.4 | exon | 9407153 | 9407604 | 9407153 | ID=MS.gene24830.t1.exon3;Parent=MS.gene24830.t1 |
| chr8.4 | CDS | 9407153 | 9407604 | 9407153 | ID=cds.MS.gene24830.t1;Parent=MS.gene24830.t1 |
| chr8.4 | exon | 9406742 | 9406749 | 9406742 | ID=MS.gene24830.t1.exon4;Parent=MS.gene24830.t1 |
| chr8.4 | CDS | 9406742 | 9406749 | 9406742 | ID=cds.MS.gene24830.t1;Parent=MS.gene24830.t1 |
| Gene Sequence |
| Protein sequence |
