Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25967.t1 | XP_003601259.1 | 99.6 | 812 | 3 | 0 | 1 | 812 | 82 | 893 | 0.00E+00 | 1614.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25967.t1 | Q8L5Y9 | 86.4 | 815 | 107 | 4 | 1 | 812 | 87 | 900 | 0.0e+00 | 1412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25967.t1 | G7J5F4 | 99.6 | 812 | 3 | 0 | 1 | 812 | 82 | 893 | 0.0e+00 | 1614.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene25967 | 0.831566 | 1.55E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene25967 | 0.85278 | 3.69E-61 | -1.69E-46 |
| MS.gene050442 | MS.gene25967 | 0.817472 | 3.24E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene25967 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene25967 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene053147 | MS.gene25967 | 0.838119 | 3.47E-57 | -1.69E-46 |
| MS.gene054291 | MS.gene25967 | -0.800277 | 1.55E-48 | -1.69E-46 |
| MS.gene054379 | MS.gene25967 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene25967 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene25967 | 0.863132 | 3.10E-64 | -1.69E-46 |
| MS.gene054581 | MS.gene25967 | 0.829509 | 4.95E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene25967 | 0.895184 | 1.22E-75 | -1.69E-46 |
| MS.gene054930 | MS.gene25967 | 0.820645 | 6.15E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene25967 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene05595 | MS.gene25967 | 0.823224 | 1.55E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene25967 | 0.808778 | 2.62E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene25967 | 0.812173 | 4.84E-51 | -1.69E-46 |
| MS.gene057929 | MS.gene25967 | 0.824514 | 7.75E-54 | -1.69E-46 |
| MS.gene058650 | MS.gene25967 | 0.816024 | 6.85E-52 | -1.69E-46 |
| MS.gene058651 | MS.gene25967 | 0.838248 | 3.22E-57 | -1.69E-46 |
| MS.gene05872 | MS.gene25967 | 0.847078 | 1.45E-59 | -1.69E-46 |
| MS.gene059440 | MS.gene25967 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene25967 | 0.827574 | 1.45E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene25967 | 0.826196 | 3.10E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAACCATCCTTACAATTT+TGG | 0.057026 | 3.2:-68724032 | None:intergenic |
| CAATTTGAACAAACTCTTTC+TGG | 0.085671 | 3.2:-68721632 | None:intergenic |
| TAGCTCTATTATCTCCTTTC+TGG | 0.143633 | 3.2:-68722022 | None:intergenic |
| TATAGCATTGTGACATTCTA+AGG | 0.194825 | 3.2:+68729169 | MS.gene25967:intron |
| TTTGCGACATGAAGGATTTC+TGG | 0.197061 | 3.2:+68722906 | MS.gene25967:CDS |
| TCCACTATTGCTTCAAGTTT+TGG | 0.201193 | 3.2:+68722267 | MS.gene25967:CDS |
| GTGCTATTTGCAGATAATTT+TGG | 0.221515 | 3.2:+68729449 | MS.gene25967:intron |
| GAAGGATTTCTGGGAGCTTT+AGG | 0.237803 | 3.2:+68722916 | MS.gene25967:CDS |
| GATAAGGGAACAAATCATTT+TGG | 0.246674 | 3.2:-68721656 | None:intergenic |
| TTGGCTGAAAAGTTGATTAA+AGG | 0.257846 | 3.2:+68730172 | MS.gene25967:CDS |
| TTACTGTTTGTTGATAATTC+AGG | 0.264371 | 3.2:+68727476 | MS.gene25967:CDS |
| TCAGGTGCTGACATTGTTCT+AGG | 0.266086 | 3.2:+68727494 | MS.gene25967:CDS |
| AGGAGAAGCTTTCCTATTCT+TGG | 0.278927 | 3.2:+68720231 | MS.gene25967:CDS |
| TGGTGGTTTGGATTATTCTA+AGG | 0.289539 | 3.2:+68722070 | MS.gene25967:CDS |
| ACTCAAAGTTACCTTAATTA+TGG | 0.294989 | 3.2:-68720532 | None:intergenic |
| CCTCTGCTTTATACTTCTAT+AGG | 0.299214 | 3.2:-68726413 | None:intergenic |
| ATGTTGGTGGTGGTACTTAT+TGG | 0.301273 | 3.2:+68721859 | MS.gene25967:CDS |
| ATGCTTGTTGGGGACATTTA+TGG | 0.301696 | 3.2:+68722050 | MS.gene25967:CDS |
| TGTTGGTGGTGGTACTTATT+GGG | 0.303285 | 3.2:+68721860 | MS.gene25967:CDS |
| GCCAATCAGACGATGATAAA+AGG | 0.305514 | 3.2:+68720166 | MS.gene25967:CDS |
| CCCTTGATGGTTGTTGAGAA+TGG | 0.311987 | 3.2:+68729270 | MS.gene25967:CDS |
| AAAAGCATCACCCCTTCTTT+TGG | 0.318392 | 3.2:-68725545 | None:intergenic |
| GTTAGGCTTGGCCAATCTAT+TGG | 0.318807 | 3.2:+68726348 | MS.gene25967:CDS |
| TGTATCTTGCCACCAGTATA+TGG | 0.319902 | 3.2:-68723018 | None:intergenic |
| TGGGGACATTTATGGTGGTT+TGG | 0.324370 | 3.2:+68722058 | MS.gene25967:CDS |
| TTTCATTTGCTGTTCAATAC+TGG | 0.329419 | 3.2:+68722757 | MS.gene25967:CDS |
| GGGAAGTTTGAGAGGGTTAG+TGG | 0.335778 | 3.2:+68721831 | MS.gene25967:CDS |
| TGATCGAAATGCCATAATTA+AGG | 0.338567 | 3.2:+68720521 | MS.gene25967:CDS |
| CTTCTAGTTAATGTTGGTTC+CGG | 0.339897 | 3.2:+68721678 | MS.gene25967:CDS |
| AGGAGCAAATTTCTTGCTTA+AGG | 0.343687 | 3.2:+68721022 | MS.gene25967:CDS |
| CACTTTGTCAAATTTGAAAC+GGG | 0.349017 | 3.2:+68720264 | MS.gene25967:CDS |
| CTCTTCAAAGAGAGAATGTT+AGG | 0.349289 | 3.2:+68727416 | MS.gene25967:CDS |
| GCAGCCTCAGCTACAATATC+AGG | 0.349938 | 3.2:-68728208 | None:intergenic |
| TTCATCTTCGGTCCCCTTGA+TGG | 0.350155 | 3.2:+68729257 | MS.gene25967:CDS |
| AAACATTGAAGGAGCGATTA+GGG | 0.351661 | 3.2:+68720193 | MS.gene25967:CDS |
| TAGGGCTTTCTAATGGTAAC+AGG | 0.355069 | 3.2:+68720211 | MS.gene25967:CDS |
| TTCCCTCATTTCCAATAGAT+TGG | 0.358243 | 3.2:-68726359 | None:intergenic |
| ACTCCTGTTGCTGGAACTAC+TGG | 0.372736 | 3.2:+68723888 | MS.gene25967:CDS |
| AGAGAGAGTGATATGTCTTC+AGG | 0.373424 | 3.2:-68722330 | None:intergenic |
| TTCTATAGGCATCAACAAAC+TGG | 0.374707 | 3.2:-68726399 | None:intergenic |
| GTGCCGATGACTCCTGTTGC+TGG | 0.376588 | 3.2:+68723879 | MS.gene25967:CDS |
| AAAACATTGAAGGAGCGATT+AGG | 0.380222 | 3.2:+68720192 | MS.gene25967:CDS |
| CCTTCTGCATACGGCAAGTT+AGG | 0.380263 | 3.2:+68726331 | MS.gene25967:CDS |
| GAGCTATCGACATGCTTGTT+GGG | 0.380873 | 3.2:+68722039 | MS.gene25967:CDS |
| CACCAAGTCTTTCTTTGAAA+AGG | 0.381637 | 3.2:-68720959 | None:intergenic |
| GTTTGTAGAACTTGATAGTA+TGG | 0.382267 | 3.2:+68726613 | MS.gene25967:CDS |
| TGCTGCAAAAGACGCCGATT+TGG | 0.388650 | 3.2:+68729344 | MS.gene25967:CDS |
| GTTTAAGTGTGATGCTTTGA+AGG | 0.388883 | 3.2:+68729512 | MS.gene25967:CDS |
| TGGTGGTACTTATTGGGGAC+TGG | 0.395806 | 3.2:+68721866 | MS.gene25967:CDS |
| ATTTGCTTACTCTAATTCAC+TGG | 0.397587 | 3.2:-68724507 | None:intergenic |
| CCGATGGGTGCTCCATATAC+TGG | 0.398412 | 3.2:+68723006 | MS.gene25967:CDS |
| TTTGGAAGTGTTTCCGTTGT+TGG | 0.401244 | 3.2:+68724004 | MS.gene25967:CDS |
| TGTTCTAGGGATGCTTCCTC+TGG | 0.402559 | 3.2:+68727508 | MS.gene25967:CDS |
| AAGACAGGTCAGCTCGGAAT+TGG | 0.403885 | 3.2:+68729317 | MS.gene25967:CDS |
| CCATGTGTGTGAAAGCTTCA+TGG | 0.404252 | 3.2:-68721605 | None:intergenic |
| TTTATTTGTCATAGGTTGAT+GGG | 0.404451 | 3.2:+68721805 | MS.gene25967:intron |
| CTTCCAAAGTTGGTACTAGA+TGG | 0.406132 | 3.2:-68723989 | None:intergenic |
| TCCAAAACTTGAAGCAATAG+TGG | 0.413680 | 3.2:-68722268 | None:intergenic |
| CCAACATTAACTAGAAGATA+AGG | 0.421746 | 3.2:-68721672 | None:intergenic |
| TTGTCATAGGTTGATGGGGA+TGG | 0.422373 | 3.2:+68721810 | MS.gene25967:intron |
| CATCGCCTGGGCTTCTCCAT+TGG | 0.428278 | 3.2:-68722881 | None:intergenic |
| TTGCGACATGAAGGATTTCT+GGG | 0.430140 | 3.2:+68722907 | MS.gene25967:CDS |
| CCTTATCTTCTAGTTAATGT+TGG | 0.434063 | 3.2:+68721672 | MS.gene25967:CDS |
| ACTACCTTGTCCACAAGATC+TGG | 0.434369 | 3.2:-68724641 | None:intergenic |
| TCTGCAAGATCGATTGTATT+GGG | 0.438407 | 3.2:-68724482 | None:intergenic |
| TGTCATAGGTTGATGGGGAT+GGG | 0.443864 | 3.2:+68721811 | MS.gene25967:intron |
| CTAAGGCGAGCTGCTGAAGC+TGG | 0.448195 | 3.2:+68729186 | MS.gene25967:CDS |
| ACTCACCTGACCGATGTTGT+AGG | 0.448748 | 3.2:-68722367 | None:intergenic |
| AGTCCAGTAGTTCCAGCAAC+AGG | 0.450308 | 3.2:-68723891 | None:intergenic |
| CCTTGATGGTTGTTGAGAAT+GGG | 0.452403 | 3.2:+68729271 | MS.gene25967:CDS |
| TTGCTGGAACTACTGGACTT+GGG | 0.454358 | 3.2:+68723895 | MS.gene25967:CDS |
| TCACTTTGTCAAATTTGAAA+CGG | 0.458203 | 3.2:+68720263 | MS.gene25967:CDS |
| ATCTGCAAGATCGATTGTAT+TGG | 0.462851 | 3.2:-68724483 | None:intergenic |
| AAGCAATAGTGGAAGCTGAT+AGG | 0.466489 | 3.2:-68722257 | None:intergenic |
| GAGCGATTAGGGCTTTCTAA+TGG | 0.468080 | 3.2:+68720204 | MS.gene25967:CDS |
| TTTGAAGTCCCTCTGTCAAA+AGG | 0.469850 | 3.2:+68723921 | MS.gene25967:CDS |
| CCCATTCTCAACAACCATCA+AGG | 0.471436 | 3.2:-68729271 | None:intergenic |
| ATCATCAGTTCCACCTTCAC+TGG | 0.473649 | 3.2:-68725521 | None:intergenic |
| AACAGTAAAGCTCTTCTATG+AGG | 0.474599 | 3.2:-68727461 | None:intergenic |
| CTCAAAAGAAAATTCATCTT+CGG | 0.475886 | 3.2:+68729245 | MS.gene25967:CDS |
| TGAAGCCTTCCACCAAGAAT+AGG | 0.477732 | 3.2:-68720243 | None:intergenic |
| AGACTGCTTACTCTAATTGA+AGG | 0.478438 | 3.2:+68727156 | MS.gene25967:CDS |
| GGTGGTACTTATTGGGGACT+GGG | 0.480437 | 3.2:+68721867 | MS.gene25967:CDS |
| GTTGCTGGAACTACTGGACT+TGG | 0.485530 | 3.2:+68723894 | MS.gene25967:CDS |
| TAGGGATGCTTCCTCTGGCT+AGG | 0.486511 | 3.2:+68727513 | MS.gene25967:CDS |
| TGCTGGAACTACTGGACTTG+GGG | 0.488456 | 3.2:+68723896 | MS.gene25967:CDS |
| AATGAGGGAAGAGTGCTTGA+GGG | 0.489682 | 3.2:+68726372 | MS.gene25967:CDS |
| AGGTTCCAATGCAGATTTCG+TGG | 0.491662 | 3.2:+68723814 | MS.gene25967:intron |
| GAATGATCCTCCTACCAAAT+CGG | 0.494985 | 3.2:-68729358 | None:intergenic |
| TTGCTTGAGCTGAGCCAGAA+AGG | 0.495131 | 3.2:+68722008 | MS.gene25967:CDS |
| CATGGAAGCTTTCAACTAGC+AGG | 0.496010 | 3.2:-68730226 | None:intergenic |
| TAAAATGCGCAGACCTTGGC+GGG | 0.497032 | 3.2:+68727275 | MS.gene25967:CDS |
| TGCATACGGCAAGTTAGGCT+TGG | 0.498634 | 3.2:+68726336 | MS.gene25967:CDS |
| AGAGCTATCGACATGCTTGT+TGG | 0.498893 | 3.2:+68722038 | MS.gene25967:CDS |
| AGGGTTAGTGGGACAAATGT+TGG | 0.499572 | 3.2:+68721843 | MS.gene25967:CDS |
| CAACATTAACTAGAAGATAA+GGG | 0.500111 | 3.2:-68721671 | None:intergenic |
| TGTGTTGATCTCTATCATAA+AGG | 0.501529 | 3.2:+68727219 | MS.gene25967:CDS |
| TCTCCATCTAGTACCAACTT+TGG | 0.502815 | 3.2:+68723986 | MS.gene25967:CDS |
| AACGGAAACACTTCCAAAGT+TGG | 0.505796 | 3.2:-68723999 | None:intergenic |
| AAAGAGAGAATGTTAGGGAC+CGG | 0.506027 | 3.2:+68727422 | MS.gene25967:CDS |
| ATGGGGATGGGAAGTTTGAG+AGG | 0.506268 | 3.2:+68721823 | MS.gene25967:CDS |
| AGGGATGCTTCCTCTGGCTA+GGG | 0.513859 | 3.2:+68727514 | MS.gene25967:CDS |
| TCCAATGCAGATTTCGTGGA+TGG | 0.514701 | 3.2:+68723818 | MS.gene25967:intron |
| GCAATAAAATGCGCAGACCT+TGG | 0.515821 | 3.2:+68727271 | MS.gene25967:CDS |
| GAACTGATGATGCCAAAAGA+AGG | 0.520146 | 3.2:+68725533 | MS.gene25967:CDS |
| TGGCCAATCTATTGGAAATG+AGG | 0.520415 | 3.2:+68726356 | MS.gene25967:CDS |
| ATGGAGGAGCCTTCTGCATA+CGG | 0.524279 | 3.2:+68726322 | MS.gene25967:CDS |
| GTCATTATTACCTTGACAAG+TGG | 0.524525 | 3.2:-68725585 | None:intergenic |
| TTCCGGTGTTAGTATGATCA+AGG | 0.525075 | 3.2:+68721695 | MS.gene25967:CDS |
| ACATATCACTCTCTCTTCTA+CGG | 0.529289 | 3.2:+68722337 | MS.gene25967:CDS |
| CCATGAAGCTTTCACACACA+TGG | 0.530882 | 3.2:+68721605 | MS.gene25967:CDS |
| AAGTCTTTCTTTGAAAAGGT+CGG | 0.531063 | 3.2:-68720955 | None:intergenic |
| GGCCAATCTATTGGAAATGA+GGG | 0.531273 | 3.2:+68726357 | MS.gene25967:CDS |
| ACATCAAATGAATAGGTTGA+TGG | 0.531786 | 3.2:+68726303 | MS.gene25967:intron |
| GTTAGTTGAAAGGTTTCCGA+TGG | 0.532451 | 3.2:+68722990 | MS.gene25967:CDS |
| ACAGTAAAGCTCTTCTATGA+GGG | 0.532783 | 3.2:-68727460 | None:intergenic |
| TCAAGTTCTACAAACAAGTC+AGG | 0.533102 | 3.2:-68726605 | None:intergenic |
| TAAAAGGAAGAAAACATTGA+AGG | 0.533223 | 3.2:+68720182 | MS.gene25967:CDS |
| AGCAAATGAAAGAGTGTCCA+TGG | 0.533459 | 3.2:-68722745 | None:intergenic |
| AAGATACATGGCCCACCACT+TGG | 0.534164 | 3.2:+68723033 | MS.gene25967:CDS |
| GCAACAGGAGTCATCGGCAC+AGG | 0.535483 | 3.2:-68723876 | None:intergenic |
| GCTTTCCTATTCTTGGTGGA+AGG | 0.535678 | 3.2:+68720238 | MS.gene25967:CDS |
| TATACTGGTGGCAAGATACA+TGG | 0.537423 | 3.2:+68723021 | MS.gene25967:CDS |
| GTGATGAAGGCTACTGGAGG+TGG | 0.539097 | 3.2:+68720918 | MS.gene25967:intron |
| TGTGGATAATAGGGAAAATG+AGG | 0.541454 | 3.2:+68726565 | MS.gene25967:intron |
| TGGTGCATCAGTTAGTTGAA+AGG | 0.545222 | 3.2:+68722980 | MS.gene25967:CDS |
| TATTGTAGCTGAGGCTGCCA+AGG | 0.545712 | 3.2:+68728213 | MS.gene25967:CDS |
| ATAAAATGCGCAGACCTTGG+CGG | 0.549032 | 3.2:+68727274 | MS.gene25967:CDS |
| AAATGAGGGAAGAGTGCTTG+AGG | 0.549228 | 3.2:+68726371 | MS.gene25967:CDS |
| TTATTTGTCATAGGTTGATG+GGG | 0.552120 | 3.2:+68721806 | MS.gene25967:intron |
| AGAAGCTTTCCTATTCTTGG+TGG | 0.558179 | 3.2:+68720234 | MS.gene25967:CDS |
| GGAAGTTTGAGAGGGTTAGT+GGG | 0.558531 | 3.2:+68721832 | MS.gene25967:CDS |
| AAGAGAGAATGTTAGGGACC+GGG | 0.558973 | 3.2:+68727423 | MS.gene25967:CDS |
| GGCAGGATCTCTGATAAAGT+TGG | 0.559378 | 3.2:+68720122 | None:intergenic |
| TCATTATTACCTTGACAAGT+GGG | 0.560771 | 3.2:-68725584 | None:intergenic |
| TCATTCAAATCGCCAAGTGG+TGG | 0.560907 | 3.2:-68723045 | None:intergenic |
| TAGGTCCAATGGAGAAGCCC+AGG | 0.563858 | 3.2:+68722876 | MS.gene25967:intron |
| CAGGTGCTGACATTGTTCTA+GGG | 0.564205 | 3.2:+68727495 | MS.gene25967:CDS |
| ACCTGTCTTAAGTCTATACA+TGG | 0.565218 | 3.2:-68729303 | None:intergenic |
| GATTTCCTACAACATCGGTC+AGG | 0.567822 | 3.2:+68722362 | MS.gene25967:CDS |
| TTTGCTTACTCTAATTCACT+GGG | 0.574456 | 3.2:-68724506 | None:intergenic |
| CCATTCTCAACAACCATCAA+GGG | 0.574628 | 3.2:-68729270 | None:intergenic |
| CACCTTGATCATACTAACAC+CGG | 0.575151 | 3.2:-68721697 | None:intergenic |
| CAGGGGTCATGCTTATACCA+TGG | 0.575740 | 3.2:+68722728 | MS.gene25967:CDS |
| GCTTCCTGATATTGTAGCTG+AGG | 0.576697 | 3.2:+68728204 | MS.gene25967:CDS |
| GCAGTCACATCATTCAAAGC+AGG | 0.576932 | 3.2:-68728175 | None:intergenic |
| AGGCGAGCTGCTGAAGCTGG+AGG | 0.578900 | 3.2:+68729189 | MS.gene25967:CDS |
| CAGGCTGTTGCCAGTGAAGG+TGG | 0.580036 | 3.2:+68725511 | MS.gene25967:intron |
| CCTAACTTGCCGTATGCAGA+AGG | 0.581095 | 3.2:-68726331 | None:intergenic |
| AGAGCACTTACCAGATCTTG+TGG | 0.584881 | 3.2:+68724631 | MS.gene25967:CDS |
| CATTCAAATCGCCAAGTGGT+GGG | 0.589143 | 3.2:-68723044 | None:intergenic |
| ACTTGGCGATTTGAATGAGA+AGG | 0.589246 | 3.2:+68723050 | MS.gene25967:CDS |
| GACTGTTAACAAAGTGCAAG+AGG | 0.589787 | 3.2:+68721892 | MS.gene25967:CDS |
| AGAACTTGATAGTATGGATG+AGG | 0.590772 | 3.2:+68726619 | MS.gene25967:CDS |
| TTAATTCCACCTACCCGCCA+AGG | 0.591741 | 3.2:-68727288 | None:intergenic |
| GTTCCAGCAACAGGAGTCAT+CGG | 0.593671 | 3.2:-68723882 | None:intergenic |
| CTTGTTGGGGACATTTATGG+TGG | 0.594785 | 3.2:+68722053 | MS.gene25967:CDS |
| TCTTCAAAGAGAGAATGTTA+GGG | 0.595349 | 3.2:+68727417 | MS.gene25967:CDS |
| CTTACCAGATCTTGTGGACA+AGG | 0.596291 | 3.2:+68724637 | MS.gene25967:CDS |
| ATAGAGATCAACACATGCAC+GGG | 0.596357 | 3.2:-68727211 | None:intergenic |
| GCTAGGGAGCTCCTCCGTCG+TGG | 0.596909 | 3.2:+68727530 | MS.gene25967:CDS |
| GAAGCTTTCAACTAGCAGGC+TGG | 0.597201 | 3.2:-68730222 | None:intergenic |
| GAAATGAATTGTCTTGTGGC+AGG | 0.597674 | 3.2:+68721002 | MS.gene25967:CDS |
| CGGATGATTTCCTACAACAT+CGG | 0.602117 | 3.2:+68722357 | MS.gene25967:CDS |
| GTTGGTGGTGGTACTTATTG+GGG | 0.602827 | 3.2:+68721861 | MS.gene25967:CDS |
| TCCATGTATAGACTTAAGAC+AGG | 0.602929 | 3.2:+68729302 | MS.gene25967:CDS |
| GCATGGTTTAGATGACCTCA+TGG | 0.603918 | 3.2:+68722960 | MS.gene25967:CDS |
| TGGGGATGGGAAGTTTGAGA+GGG | 0.604314 | 3.2:+68721824 | MS.gene25967:CDS |
| AGTGGGACAAATGTTGGTGG+TGG | 0.605265 | 3.2:+68721849 | MS.gene25967:CDS |
| AGACTTAAGACAGGTCAGCT+CGG | 0.605465 | 3.2:+68729311 | MS.gene25967:CDS |
| ATGGTTGTTGAGAATGGGTG+CGG | 0.610452 | 3.2:+68729276 | MS.gene25967:CDS |
| AGCTATCGACATGCTTGTTG+GGG | 0.611783 | 3.2:+68722040 | MS.gene25967:CDS |
| GTTAGTGGGACAAATGTTGG+TGG | 0.614321 | 3.2:+68721846 | MS.gene25967:CDS |
| CACACTTAAACTGAGCATAG+AGG | 0.616056 | 3.2:-68729500 | None:intergenic |
| GCTGGAACTACTGGACTTGG+GGG | 0.616473 | 3.2:+68723897 | MS.gene25967:CDS |
| GATAGAGATCAACACATGCA+CGG | 0.617200 | 3.2:-68727212 | None:intergenic |
| TTAGTTGAAAGGTTTCCGAT+GGG | 0.620541 | 3.2:+68722991 | MS.gene25967:CDS |
| TTTGAATGATGTGACTGCAA+TGG | 0.622671 | 3.2:+68728180 | MS.gene25967:CDS |
| GATGCGAGTGCTCTAAATGT+TGG | 0.622823 | 3.2:+68723960 | MS.gene25967:CDS |
| AACTGATGATGCCAAAAGAA+GGG | 0.624687 | 3.2:+68725534 | MS.gene25967:CDS |
| AGAGAGAATGTTAGGGACCG+GGG | 0.628373 | 3.2:+68727424 | MS.gene25967:CDS |
| ATGGGTGCTCCATATACTGG+TGG | 0.639105 | 3.2:+68723009 | MS.gene25967:CDS |
| CCAGTATATGGAGCACCCAT+CGG | 0.641614 | 3.2:-68723006 | None:intergenic |
| TTTATGAGTTACGAAAAGCA+TGG | 0.645096 | 3.2:+68722943 | MS.gene25967:CDS |
| TCAAATGAATAGGTTGATGG+AGG | 0.647737 | 3.2:+68726306 | MS.gene25967:intron |
| GAAGCTTTCACACACATGGA+GGG | 0.648007 | 3.2:+68721609 | MS.gene25967:CDS |
| CCTATAGAAGTATAAAGCAG+AGG | 0.649593 | 3.2:+68726413 | MS.gene25967:CDS |
| CAGTAAAGCTCTTCTATGAG+GGG | 0.649740 | 3.2:-68727459 | None:intergenic |
| ATGCAGGCTGTTGCCAGTGA+AGG | 0.652213 | 3.2:+68725508 | MS.gene25967:intron |
| AGATGAAATGAATTGTCTTG+TGG | 0.660802 | 3.2:+68720998 | MS.gene25967:CDS |
| CGGAGGAGCTCCCTAGCCAG+AGG | 0.661956 | 3.2:-68727524 | None:intergenic |
| AGTAAAGCTCTTCTATGAGG+GGG | 0.666765 | 3.2:-68727458 | None:intergenic |
| TGAAGCTTTCACACACATGG+AGG | 0.674064 | 3.2:+68721608 | MS.gene25967:CDS |
| TCACTTCAGTTCCACGACGG+AGG | 0.674137 | 3.2:-68727541 | None:intergenic |
| TTCTCATTCAAATCGCCAAG+TGG | 0.675820 | 3.2:-68723048 | None:intergenic |
| CATTCTCAACAACCATCAAG+GGG | 0.678004 | 3.2:-68729269 | None:intergenic |
| ACTGATGATGCCAAAAGAAG+GGG | 0.688906 | 3.2:+68725535 | MS.gene25967:CDS |
| GTCACGTTACTCAGATACTG+AGG | 0.699781 | 3.2:+68720497 | MS.gene25967:CDS |
| AACTCACTTCAGTTCCACGA+CGG | 0.704303 | 3.2:-68727544 | None:intergenic |
| CAACTAACTGATGCACCATG+AGG | 0.704343 | 3.2:-68722975 | None:intergenic |
| TTTGTGATGAAGGCTACTGG+AGG | 0.733686 | 3.2:+68720915 | MS.gene25967:intron |
| CATTCAAAGCAGCTTCACCG+TGG | 0.733695 | 3.2:+68720315 | MS.gene25967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68720127 | 68730237 | 68720127 | ID=MS.gene25967 |
| chr3.2 | mRNA | 68720127 | 68730237 | 68720127 | ID=MS.gene25967.t1;Parent=MS.gene25967 |
| chr3.2 | exon | 68720127 | 68720336 | 68720127 | ID=MS.gene25967.t1.exon1;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68720127 | 68720336 | 68720127 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68720490 | 68720542 | 68720490 | ID=MS.gene25967.t1.exon2;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68720490 | 68720542 | 68720490 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68720927 | 68721043 | 68720927 | ID=MS.gene25967.t1.exon3;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68720927 | 68721043 | 68720927 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68721597 | 68721716 | 68721597 | ID=MS.gene25967.t1.exon4;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68721597 | 68721716 | 68721597 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68721819 | 68721913 | 68721819 | ID=MS.gene25967.t1.exon5;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68721819 | 68721913 | 68721819 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68721998 | 68722091 | 68721998 | ID=MS.gene25967.t1.exon6;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68721998 | 68722091 | 68721998 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68722252 | 68722383 | 68722252 | ID=MS.gene25967.t1.exon7;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68722252 | 68722383 | 68722252 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68722666 | 68722778 | 68722666 | ID=MS.gene25967.t1.exon8;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68722666 | 68722778 | 68722666 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68722879 | 68723071 | 68722879 | ID=MS.gene25967.t1.exon9;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68722879 | 68723071 | 68722879 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68723828 | 68724039 | 68723828 | ID=MS.gene25967.t1.exon10;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68723828 | 68724039 | 68723828 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68724475 | 68724519 | 68724475 | ID=MS.gene25967.t1.exon11;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68724475 | 68724519 | 68724475 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68724610 | 68724658 | 68724610 | ID=MS.gene25967.t1.exon12;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68724610 | 68724658 | 68724610 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68725514 | 68725596 | 68725514 | ID=MS.gene25967.t1.exon13;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68725514 | 68725596 | 68725514 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68726318 | 68726434 | 68726318 | ID=MS.gene25967.t1.exon14;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68726318 | 68726434 | 68726318 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68726577 | 68726640 | 68726577 | ID=MS.gene25967.t1.exon15;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68726577 | 68726640 | 68726577 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68727150 | 68727296 | 68727150 | ID=MS.gene25967.t1.exon16;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68727150 | 68727296 | 68727150 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68727401 | 68727559 | 68727401 | ID=MS.gene25967.t1.exon17;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68727401 | 68727559 | 68727401 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68728151 | 68728234 | 68728151 | ID=MS.gene25967.t1.exon18;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68728151 | 68728234 | 68728151 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68729174 | 68729365 | 68729174 | ID=MS.gene25967.t1.exon19;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68729174 | 68729365 | 68729174 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68729462 | 68729533 | 68729462 | ID=MS.gene25967.t1.exon20;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68729462 | 68729533 | 68729462 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| chr3.2 | exon | 68730148 | 68730237 | 68730148 | ID=MS.gene25967.t1.exon21;Parent=MS.gene25967.t1 |
| chr3.2 | CDS | 68730148 | 68730237 | 68730148 | ID=cds.MS.gene25967.t1;Parent=MS.gene25967.t1 |
| Gene Sequence |
| Protein sequence |
