Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27333.t1 | XP_013466066.1 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 3.30E-238 | 833.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27333.t1 | Q9LN62 | 70.3 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 1.6e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27333.t1 | A0A072VPP4 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 2.3e-238 | 833.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene27333 | -0.819224 | 1.30E-52 | -1.69E-46 |
| MS.gene050521 | MS.gene27333 | 0.85145 | 8.81E-61 | -1.69E-46 |
| MS.gene050864 | MS.gene27333 | 0.826068 | 3.32E-54 | -1.69E-46 |
| MS.gene055251 | MS.gene27333 | 0.859662 | 3.54E-63 | -1.69E-46 |
| MS.gene055751 | MS.gene27333 | -0.809382 | 1.94E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene27333 | -0.820171 | 7.90E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene27333 | -0.81941 | 1.18E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene27333 | -0.803158 | 3.98E-49 | -1.69E-46 |
| MS.gene058210 | MS.gene27333 | 0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene27333 | 0.834854 | 2.36E-56 | -1.69E-46 |
| MS.gene058386 | MS.gene27333 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene27333 | 0.818037 | 2.42E-52 | -1.69E-46 |
| MS.gene06042 | MS.gene27333 | 0.834605 | 2.72E-56 | -1.69E-46 |
| MS.gene060929 | MS.gene27333 | 0.832011 | 1.21E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene27333 | -0.810726 | 9.99E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene27333 | 0.863629 | 2.17E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27333.t1 | MTR_1g022025 | 98.131 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 0.0 | 874 |
| MS.gene27333.t1 | MTR_4g069260 | 73.182 | 440 | 102 | 3 | 1 | 428 | 1 | 436 | 0.0 | 676 |
| MS.gene27333.t1 | MTR_4g069300 | 69.767 | 430 | 123 | 2 | 5 | 427 | 7 | 436 | 0.0 | 618 |
| MS.gene27333.t1 | MTR_4g069430 | 68.545 | 426 | 119 | 5 | 5 | 427 | 7 | 420 | 0.0 | 583 |
| MS.gene27333.t1 | MTR_4g069420 | 65.268 | 429 | 135 | 2 | 5 | 427 | 7 | 427 | 0.0 | 577 |
| MS.gene27333.t1 | MTR_4g069350 | 64.651 | 430 | 138 | 3 | 5 | 427 | 7 | 429 | 0.0 | 568 |
| MS.gene27333.t1 | MTR_4g069390 | 72.832 | 346 | 89 | 1 | 82 | 427 | 12 | 352 | 0.0 | 538 |
| MS.gene27333.t1 | MTR_5g025590 | 27.805 | 205 | 131 | 6 | 145 | 344 | 103 | 295 | 1.19e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27333.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene27333.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene27333.t1 | AT1G75110 | 68.736 | 435 | 122 | 4 | 1 | 428 | 1 | 428 | 0.0 | 626 |
| MS.gene27333.t1 | AT1G75120 | 61.631 | 417 | 141 | 2 | 11 | 427 | 5 | 402 | 0.0 | 532 |
| MS.gene27333.t1 | AT2G35610 | 25.120 | 418 | 238 | 17 | 3 | 398 | 8 | 372 | 1.04e-12 | 70.5 |
Find 91 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTGATGAACCTAAAA+TGG | 0.118559 | 1.2:+2602984 | MS.gene27333:CDS |
| AGTTGGCATATCTAATTATT+TGG | 0.214194 | 1.2:+2602669 | MS.gene27333:CDS |
| TATGCCAACTTTCTTGATAT+TGG | 0.231969 | 1.2:-2602656 | None:intergenic |
| CCCCTTTGATTATATTTATA+GGG | 0.245145 | 1.2:+2602900 | MS.gene27333:CDS |
| TTCATCCTTGCAAGTTTATC+AGG | 0.257490 | 1.2:-2603321 | None:intergenic |
| ACCCCTTTGATTATATTTAT+AGG | 0.264534 | 1.2:+2602899 | MS.gene27333:CDS |
| CATAGCAATCATACAGCTTA+TGG | 0.265461 | 1.2:+2602952 | MS.gene27333:CDS |
| TAAAGAGGTCGTTGTTGTTC+TGG | 0.289152 | 1.2:+2602594 | MS.gene27333:CDS |
| ATGCTCATACCATGAGAATA+TGG | 0.294158 | 1.2:+2603019 | MS.gene27333:CDS |
| GAACCTTACTGTTCATAAAA+AGG | 0.300928 | 1.2:-2603227 | None:intergenic |
| AAACACAAGGCTGGTCCTTT+TGG | 0.309663 | 1.2:+2602478 | MS.gene27333:CDS |
| TTCAACGCATTAACTTGTTC+TGG | 0.347234 | 1.2:-2602325 | None:intergenic |
| AGCTCAATTGAAGGAATTGT+TGG | 0.375607 | 1.2:-2603072 | None:intergenic |
| GGTGGGAATCATGCTGTCTC+TGG | 0.396405 | 1.2:+2602793 | MS.gene27333:CDS |
| CCTTCACATCCTGGTTATGA+TGG | 0.408046 | 1.2:+2603171 | MS.gene27333:CDS |
| TCCGAGATGCGGTGATTGAA+TGG | 0.416396 | 1.2:-2601039 | None:intergenic |
| CCCTAGATTGGCAAAACTCT+TGG | 0.417448 | 1.2:+2602555 | MS.gene27333:CDS |
| TGATGAACCTAAAATGGGTT+GGG | 0.421735 | 1.2:+2602990 | MS.gene27333:CDS |
| AAGAAGAACGCCGATGAAAA+CGG | 0.426281 | 1.2:-2601071 | None:intergenic |
| TTCTGTTATTCCCGATGAAT+CGG | 0.434960 | 1.2:+2602528 | MS.gene27333:CDS |
| TAATGTGTTGGAGATGTTAC+AGG | 0.437641 | 1.2:+2602624 | MS.gene27333:CDS |
| TCCCTATAAATATAATCAAA+GGG | 0.442068 | 1.2:-2602901 | None:intergenic |
| ACCAACCTTGTGACTGAGAA+TGG | 0.449721 | 1.2:-2601155 | None:intergenic |
| GTAGTTGAGTTCTATGTCAA+TGG | 0.449839 | 1.2:+2603348 | MS.gene27333:CDS |
| GAATTCTGAGCTGAAGAAGC+AGG | 0.473704 | 1.2:+2602375 | MS.gene27333:CDS |
| TCTAATGGAGAAGCTGCGTT+TGG | 0.475422 | 1.2:+2602405 | MS.gene27333:CDS |
| ATCCCTATAAATATAATCAA+AGG | 0.485270 | 1.2:-2602902 | None:intergenic |
| GAAGCAGGTGAAAGGTCTAA+TGG | 0.486719 | 1.2:+2602390 | MS.gene27333:CDS |
| TGAATCGGTGAACCCTAGAT+TGG | 0.487843 | 1.2:+2602543 | MS.gene27333:CDS |
| CGATCTAAAAGCTCAATTGA+AGG | 0.489088 | 1.2:-2603081 | None:intergenic |
| ATTGAATCAACACCTTGATC+CGG | 0.489958 | 1.2:-2602760 | None:intergenic |
| GGAAATTGCTATTTATAAAG+AGG | 0.490420 | 1.2:+2602579 | MS.gene27333:CDS |
| GTTGATTCAATTGCCAAGTC+GGG | 0.491275 | 1.2:+2602772 | MS.gene27333:CDS |
| ACGGAACAGTTTGTTGTGCT+TGG | 0.491386 | 1.2:+2602451 | MS.gene27333:CDS |
| AATGGAGAAGCTGCGTTTGG+CGG | 0.496977 | 1.2:+2602408 | MS.gene27333:CDS |
| TTGATGAACCTAAAATGGGT+TGG | 0.498626 | 1.2:+2602989 | MS.gene27333:CDS |
| TGCTCATACCATGAGAATAT+GGG | 0.499575 | 1.2:+2603020 | MS.gene27333:CDS |
| TCCTACTAATCAGAACCATC+GGG | 0.500121 | 1.2:-2603396 | None:intergenic |
| TCTAGGGTTCACCGATTCAT+CGG | 0.501111 | 1.2:-2602539 | None:intergenic |
| CTAGGGTTCACCGATTCATC+GGG | 0.503259 | 1.2:-2602538 | None:intergenic |
| AGAATATGGGTATATAACTC+TGG | 0.505845 | 1.2:+2603033 | MS.gene27333:CDS |
| TTGAGAGAGTTTCTGCAACT+AGG | 0.508202 | 1.2:+2602832 | MS.gene27333:CDS |
| TTCACCAATATCAAGAAAGT+TGG | 0.508424 | 1.2:+2602652 | MS.gene27333:CDS |
| GGCTTTCTAAAGAGAAAGCA+TGG | 0.511884 | 1.2:+2603115 | MS.gene27333:CDS |
| AGGTTACAGCGTTCTCCTCT+CGG | 0.515400 | 1.2:+2602852 | MS.gene27333:CDS |
| GTCTTTGATGAACCTAAAAT+GGG | 0.519326 | 1.2:+2602985 | MS.gene27333:CDS |
| ATCCTACTAATCAGAACCAT+CGG | 0.522896 | 1.2:-2603397 | None:intergenic |
| TAGTTGAGTTCTATGTCAAT+GGG | 0.523537 | 1.2:+2603349 | MS.gene27333:CDS |
| TATAGAAGAGACCCGGATCA+AGG | 0.525636 | 1.2:+2602748 | MS.gene27333:CDS |
| AGCATGATTCCCACCCGACT+TGG | 0.527468 | 1.2:-2602785 | None:intergenic |
| GCGTTTGGCGGAGCAAGGAA+AGG | 0.528394 | 1.2:+2602420 | MS.gene27333:CDS |
| TAGATTGGCAAAACTCTTGG+CGG | 0.530183 | 1.2:+2602558 | MS.gene27333:CDS |
| TCCGGGTCTCTTCTATAGAC+AGG | 0.531058 | 1.2:-2602742 | None:intergenic |
| GATTCAATTGCCAAGTCGGG+TGG | 0.535736 | 1.2:+2602775 | MS.gene27333:CDS |
| TTGAATCAACACCTTGATCC+GGG | 0.540173 | 1.2:-2602759 | None:intergenic |
| TGTTGATTCAATTGCCAAGT+CGG | 0.547442 | 1.2:+2602771 | MS.gene27333:CDS |
| AAGCTGCGTTTGGCGGAGCA+AGG | 0.554092 | 1.2:+2602415 | MS.gene27333:CDS |
| CCATCATAACCAGGATGTGA+AGG | 0.557644 | 1.2:-2603171 | None:intergenic |
| ATTTGATAAACAGCAATGGC+AGG | 0.559173 | 1.2:+2600983 | None:intergenic |
| TCTGGCTAACACTAATGTGT+TGG | 0.561756 | 1.2:+2602612 | MS.gene27333:CDS |
| AGAGCCTTGACAGTGCCAAA+AGG | 0.564867 | 1.2:-2602493 | None:intergenic |
| ACCATTCAATCACCGCATCT+CGG | 0.566295 | 1.2:+2601038 | MS.gene27333:CDS |
| GAGCTGAAGAAGCAGGTGAA+AGG | 0.566632 | 1.2:+2602382 | MS.gene27333:CDS |
| TATTTATAGGGATTCAGATG+TGG | 0.569522 | 1.2:+2602912 | MS.gene27333:CDS |
| TGTTGGAGATGTTACAGGTA+TGG | 0.571269 | 1.2:+2602629 | MS.gene27333:CDS |
| CGTTTGGCGGAGCAAGGAAA+GGG | 0.575655 | 1.2:+2602421 | MS.gene27333:CDS |
| GTTATATACCCATATTCTCA+TGG | 0.587662 | 1.2:-2603028 | None:intergenic |
| TAGTTAACATGTACAATCAC+AGG | 0.592948 | 1.2:-2603294 | None:intergenic |
| GCAAGGAAAGGGTCATGCTA+CGG | 0.593930 | 1.2:+2602432 | MS.gene27333:CDS |
| ATCATCCTGATAAACTTGCA+AGG | 0.604744 | 1.2:+2603316 | MS.gene27333:CDS |
| CATCATAACCAGGATGTGAA+GGG | 0.619342 | 1.2:-2603170 | None:intergenic |
| ATTCAATTGCCAAGTCGGGT+GGG | 0.620463 | 1.2:+2602776 | MS.gene27333:CDS |
| TCCTGTCTATAGAAGAGACC+CGG | 0.625262 | 1.2:+2602741 | MS.gene27333:CDS |
| GATTCATCGGGAATAACAGA+AGG | 0.626071 | 1.2:-2602526 | None:intergenic |
| GCGCTCGACAGTTTCCCCGA+TGG | 0.627821 | 1.2:+2603381 | MS.gene27333:CDS |
| GCATGAAGTCCATCATAACC+AGG | 0.631266 | 1.2:-2603180 | None:intergenic |
| CCCTATAAATATAATCAAAG+GGG | 0.636439 | 1.2:-2602900 | None:intergenic |
| TTTCTCTTTAGAAAGCCGAT+CGG | 0.638101 | 1.2:-2603109 | None:intergenic |
| TCATGCTGCAAAGAGAACAA+TGG | 0.639030 | 1.2:+2603197 | MS.gene27333:CDS |
| GATGTGGAGTCAATGTCAGA+TGG | 0.642589 | 1.2:+2602928 | MS.gene27333:CDS |
| GGCAACGGCGATCCGAGATG+CGG | 0.643444 | 1.2:-2601050 | None:intergenic |
| AACGCCGATGAAAACGGCAA+CGG | 0.643805 | 1.2:-2601065 | None:intergenic |
| CTTGGTGAGAAACACAAGGC+TGG | 0.654456 | 1.2:+2602469 | MS.gene27333:CDS |
| GCTTTCTAAAGAGAAAGCAT+GGG | 0.666613 | 1.2:+2603116 | MS.gene27333:CDS |
| GAGAATGGTCTGAGTTGATG+CGG | 0.680850 | 1.2:-2601140 | None:intergenic |
| AATGGTCTGAGTTGATGCGG+TGG | 0.700511 | 1.2:-2601137 | None:intergenic |
| TCAGACCATTCTCAGTCACA+AGG | 0.710546 | 1.2:+2601150 | MS.gene27333:CDS |
| ACACAATATCGACATCCGAG+AGG | 0.744525 | 1.2:-2602867 | None:intergenic |
| CCTACTAATCAGAACCATCG+GGG | 0.749180 | 1.2:-2603395 | None:intergenic |
| TGTGCTTGGTGAGAAACACA+AGG | 0.756567 | 1.2:+2602465 | MS.gene27333:CDS |
| GTGGAAATGAAGAAACCGTG+TGG | 0.802724 | 1.2:-2601118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATGTGGATTATATTAA+TGG | + | chr1.2:2601939-2601958 | MS.gene27333:intron | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | + | chr1.2:2601957-2601976 | MS.gene27333:intron | 15.0% |
| !!! | ATAACTTGTTTATCAAAATA+TGG | + | chr1.2:2601546-2601565 | MS.gene27333:intron | 15.0% |
| !!! | TAATGGATTTTATATACTTT+AGG | + | chr1.2:2601956-2601975 | MS.gene27333:intron | 15.0% |
| !! | ATCCCTATAAATATAATCAA+AGG | - | chr1.2:2602905-2602924 | None:intergenic | 20.0% |
| !! | TCCCTATAAATATAATCAAA+GGG | - | chr1.2:2602904-2602923 | None:intergenic | 20.0% |
| !!! | ACAAATTTTCACATACATTA+GGG | - | chr1.2:2601898-2601917 | None:intergenic | 20.0% |
| ! | AAGTTAGCCATTCAATTTAT+GGG | + | chr1.2:2601653-2601672 | MS.gene27333:intron | 25.0% |
| ! | ACCCCTTTGATTATATTTAT+AGG | + | chr1.2:2602899-2602918 | MS.gene27333:CDS | 25.0% |
| ! | AGTTGGCATATCTAATTATT+TGG | + | chr1.2:2602669-2602688 | MS.gene27333:CDS | 25.0% |
| ! | ATACTTCAGAACTAAATTGA+TGG | - | chr1.2:2601846-2601865 | None:intergenic | 25.0% |
| ! | ATGTTATTAAGATGTGGTAA+GGG | - | chr1.2:2602017-2602036 | None:intergenic | 25.0% |
| ! | CCCCTTTGATTATATTTATA+GGG | + | chr1.2:2602900-2602919 | MS.gene27333:CDS | 25.0% |
| ! | CCCTATAAATATAATCAAAG+GGG | - | chr1.2:2602903-2602922 | None:intergenic | 25.0% |
| ! | GGTCTAATATTTACAAAACT+TGG | + | chr1.2:2601567-2601586 | MS.gene27333:intron | 25.0% |
| ! | TAATCCATGTTATTAAGATG+TGG | - | chr1.2:2602023-2602042 | None:intergenic | 25.0% |
| ! | TACTTTACCCATAAATTGAA+TGG | - | chr1.2:2601663-2601682 | None:intergenic | 25.0% |
| ! | TAGCAAATCATATAATGCAT+CGG | + | chr1.2:2601814-2601833 | MS.gene27333:intron | 25.0% |
| !! | CATCTTAATAACATGGATTA+AGG | + | chr1.2:2602023-2602042 | MS.gene27333:intron | 25.0% |
| !! | GACAAATTTTCACATACATT+AGG | - | chr1.2:2601899-2601918 | None:intergenic | 25.0% |
| !!! | GGAAATTGCTATTTATAAAG+AGG | + | chr1.2:2602579-2602598 | MS.gene27333:CDS | 25.0% |
| !!! | TAAGTTTTTTGAGACGATTT+GGG | + | chr1.2:2601231-2601250 | MS.gene27333:intron | 25.0% |
| AAACATACCCTTAAGTAGAA+AGG | - | chr1.2:2601337-2601356 | None:intergenic | 30.0% | |
| AGAATATGGGTATATAACTC+TGG | + | chr1.2:2603033-2603052 | MS.gene27333:CDS | 30.0% | |
| ATCCACATTATTAAGATGTC+AGG | - | chr1.2:2601931-2601950 | None:intergenic | 30.0% | |
| CATGTTAAGGATATCAAAAG+TGG | - | chr1.2:2602132-2602151 | None:intergenic | 30.0% | |
| CATGTTATTAAGATGTGGTA+AGG | - | chr1.2:2602018-2602037 | None:intergenic | 30.0% | |
| CTTACCACATCTTAATAACA+TGG | + | chr1.2:2602016-2602035 | MS.gene27333:intron | 30.0% | |
| GAACCTTACTGTTCATAAAA+AGG | - | chr1.2:2603230-2603249 | None:intergenic | 30.0% | |
| GAAGTTAGCCATTCAATTTA+TGG | + | chr1.2:2601652-2601671 | MS.gene27333:intron | 30.0% | |
| GTAACTGCTATAACATCATT+AGG | + | chr1.2:2601589-2601608 | MS.gene27333:intron | 30.0% | |
| GTCTTTGATGAACCTAAAAT+GGG | + | chr1.2:2602985-2603004 | MS.gene27333:CDS | 30.0% | |
| GTTATATACCCATATTCTCA+TGG | - | chr1.2:2603031-2603050 | None:intergenic | 30.0% | |
| TAGGGACTACTTATATACTT+AGG | + | chr1.2:2601975-2601994 | MS.gene27333:intron | 30.0% | |
| TAGTTAACATGTACAATCAC+AGG | - | chr1.2:2603297-2603316 | None:intergenic | 30.0% | |
| TAGTTGAGTTCTATGTCAAT+GGG | + | chr1.2:2603349-2603368 | MS.gene27333:CDS | 30.0% | |
| TATGCCAACTTTCTTGATAT+TGG | - | chr1.2:2602659-2602678 | None:intergenic | 30.0% | |
| TATTTATAGGGATTCAGATG+TGG | + | chr1.2:2602912-2602931 | MS.gene27333:CDS | 30.0% | |
| TCCACATTATTAAGATGTCA+GGG | - | chr1.2:2601930-2601949 | None:intergenic | 30.0% | |
| TGGATTAAGGAACTCAATAT+AGG | + | chr1.2:2602036-2602055 | MS.gene27333:intron | 30.0% | |
| TGTCTTTGATGAACCTAAAA+TGG | + | chr1.2:2602984-2603003 | MS.gene27333:CDS | 30.0% | |
| TTCACCAATATCAAGAAAGT+TGG | + | chr1.2:2602652-2602671 | MS.gene27333:CDS | 30.0% | |
| ! | GTACCTTTTTATGAACAGTA+AGG | + | chr1.2:2603224-2603243 | MS.gene27333:CDS | 30.0% |
| ! | TTTAGCTCCTTTCTACTTAA+GGG | + | chr1.2:2601327-2601346 | MS.gene27333:intron | 30.0% |
| !! | TAGTTCTGAACTAATCACAA+TGG | + | chr1.2:2601776-2601795 | MS.gene27333:intron | 30.0% |
| !!! | GTAAGTTTTTTGAGACGATT+TGG | + | chr1.2:2601230-2601249 | MS.gene27333:intron | 30.0% |
| !!! | TTTTAGCTCCTTTCTACTTA+AGG | + | chr1.2:2601326-2601345 | MS.gene27333:intron | 30.0% |
| AGCTCAATTGAAGGAATTGT+TGG | - | chr1.2:2603075-2603094 | None:intergenic | 35.0% | |
| ATCATCCTGATAAACTTGCA+AGG | + | chr1.2:2603316-2603335 | MS.gene27333:CDS | 35.0% | |
| ATGCTCATACCATGAGAATA+TGG | + | chr1.2:2603019-2603038 | MS.gene27333:CDS | 35.0% | |
| ATTGAATCAACACCTTGATC+CGG | - | chr1.2:2602763-2602782 | None:intergenic | 35.0% | |
| CATAGCAATCATACAGCTTA+TGG | + | chr1.2:2602952-2602971 | MS.gene27333:CDS | 35.0% | |
| CGATCTAAAAGCTCAATTGA+AGG | - | chr1.2:2603084-2603103 | None:intergenic | 35.0% | |
| GTAGTTGAGTTCTATGTCAA+TGG | + | chr1.2:2603348-2603367 | MS.gene27333:CDS | 35.0% | |
| TAATGTGTTGGAGATGTTAC+AGG | + | chr1.2:2602624-2602643 | MS.gene27333:CDS | 35.0% | |
| TCCCTGACATCTTAATAATG+TGG | + | chr1.2:2601926-2601945 | MS.gene27333:intron | 35.0% | |
| TGCTCATACCATGAGAATAT+GGG | + | chr1.2:2603020-2603039 | MS.gene27333:CDS | 35.0% | |
| TTCATCCTTGCAAGTTTATC+AGG | - | chr1.2:2603324-2603343 | None:intergenic | 35.0% | |
| TTCTGTTATTCCCGATGAAT+CGG | + | chr1.2:2602528-2602547 | MS.gene27333:CDS | 35.0% | |
| TTGATGAACCTAAAATGGGT+TGG | + | chr1.2:2602989-2603008 | MS.gene27333:CDS | 35.0% | |
| ! | GATTGAATGGTTTTTGTCTC+TGG | - | chr1.2:2601029-2601048 | None:intergenic | 35.0% |
| ! | GCTTTCTAAAGAGAAAGCAT+GGG | + | chr1.2:2603116-2603135 | MS.gene27333:CDS | 35.0% |
| ! | TGATGAACCTAAAATGGGTT+GGG | + | chr1.2:2602990-2603009 | MS.gene27333:CDS | 35.0% |
| ! | TGTGATTAGTTCAGAACTAG+TGG | - | chr1.2:2601775-2601794 | None:intergenic | 35.0% |
| ! | TGTTATGTTGTGTCGTTAGA+TGG | + | chr1.2:2602282-2602301 | MS.gene27333:intron | 35.0% |
| ! | TTTCTCTTTAGAAAGCCGAT+CGG | - | chr1.2:2603112-2603131 | None:intergenic | 35.0% |
| !! | AAAGTGTCTGTTTTCAGCTT+AGG | + | chr1.2:2601278-2601297 | MS.gene27333:intron | 35.0% |
| !! | TGTTGATTCAATTGCCAAGT+CGG | + | chr1.2:2602771-2602790 | MS.gene27333:CDS | 35.0% |
| !! | TTCAACGCATTAACTTGTTC+TGG | - | chr1.2:2602328-2602347 | None:intergenic | 35.0% |
| AAGAAGAACGCCGATGAAAA+CGG | - | chr1.2:2601074-2601093 | None:intergenic | 40.0% | |
| ATCCTTAACATGTGCCCTTA+GGG | + | chr1.2:2602140-2602159 | MS.gene27333:intron | 40.0% | |
| CATCATAACCAGGATGTGAA+GGG | - | chr1.2:2603173-2603192 | None:intergenic | 40.0% | |
| GATTCATCGGGAATAACAGA+AGG | - | chr1.2:2602529-2602548 | None:intergenic | 40.0% | |
| TAGATTGGCAAAACTCTTGG+CGG | + | chr1.2:2602558-2602577 | MS.gene27333:CDS | 40.0% | |
| TATCCTTAACATGTGCCCTT+AGG | + | chr1.2:2602139-2602158 | MS.gene27333:intron | 40.0% | |
| TCATGCTGCAAAGAGAACAA+TGG | + | chr1.2:2603197-2603216 | MS.gene27333:CDS | 40.0% | |
| TCTGGCTAACACTAATGTGT+TGG | + | chr1.2:2602612-2602631 | MS.gene27333:CDS | 40.0% | |
| TGTTGGAGATGTTACAGGTA+TGG | + | chr1.2:2602629-2602648 | MS.gene27333:CDS | 40.0% | |
| TTGAATCAACACCTTGATCC+GGG | - | chr1.2:2602762-2602781 | None:intergenic | 40.0% | |
| TTGAGAGAGTTTCTGCAACT+AGG | + | chr1.2:2602832-2602851 | MS.gene27333:CDS | 40.0% | |
| ! | CCAAGAGTTTTGCCAATCTA+GGG | - | chr1.2:2602558-2602577 | None:intergenic | 40.0% |
| ! | GGCTTTCTAAAGAGAAAGCA+TGG | + | chr1.2:2603115-2603134 | MS.gene27333:CDS | 40.0% |
| ! | GTTGATTCAATTGCCAAGTC+GGG | + | chr1.2:2602772-2602791 | MS.gene27333:CDS | 40.0% |
| ! | TAAAGAGGTCGTTGTTGTTC+TGG | + | chr1.2:2602594-2602613 | MS.gene27333:CDS | 40.0% |
| ! | TATCTAGCCCAACCCATTTT+AGG | - | chr1.2:2603000-2603019 | None:intergenic | 40.0% |
| ! | TGTCTGTTTTCAGCTTAGGA+AGG | + | chr1.2:2601282-2601301 | MS.gene27333:intron | 40.0% |
| ! | TTCGCTTTCTTTTCACCACA+CGG | + | chr1.2:2601103-2601122 | MS.gene27333:CDS | 40.0% |
| ACACAATATCGACATCCGAG+AGG | - | chr1.2:2602870-2602889 | None:intergenic | 45.0% | |
| ACCAACCTTGTGACTGAGAA+TGG | - | chr1.2:2601158-2601177 | None:intergenic | 45.0% | |
| ACCATTCAATCACCGCATCT+CGG | + | chr1.2:2601038-2601057 | MS.gene27333:CDS | 45.0% | |
| ACCATTCTCAGTCACAAGGT+TGG | + | chr1.2:2601154-2601173 | MS.gene27333:intron | 45.0% | |
| ATTCAATTGCCAAGTCGGGT+GGG | + | chr1.2:2602776-2602795 | MS.gene27333:CDS | 45.0% | |
| CCATCATAACCAGGATGTGA+AGG | - | chr1.2:2603174-2603193 | None:intergenic | 45.0% | |
| CCCTAGATTGGCAAAACTCT+TGG | + | chr1.2:2602555-2602574 | MS.gene27333:CDS | 45.0% | |
| CCTTCACATCCTGGTTATGA+TGG | + | chr1.2:2603171-2603190 | MS.gene27333:CDS | 45.0% | |
| GAAGCAGGTGAAAGGTCTAA+TGG | + | chr1.2:2602390-2602409 | MS.gene27333:CDS | 45.0% | |
| GAATTCTGAGCTGAAGAAGC+AGG | + | chr1.2:2602375-2602394 | MS.gene27333:CDS | 45.0% | |
| GATGTGGAGTCAATGTCAGA+TGG | + | chr1.2:2602928-2602947 | MS.gene27333:CDS | 45.0% | |
| GCATGAAGTCCATCATAACC+AGG | - | chr1.2:2603183-2603202 | None:intergenic | 45.0% | |
| GTGGAAATGAAGAAACCGTG+TGG | - | chr1.2:2601121-2601140 | None:intergenic | 45.0% | |
| TATAGAAGAGACCCGGATCA+AGG | + | chr1.2:2602748-2602767 | MS.gene27333:CDS | 45.0% | |
| TCAGACCATTCTCAGTCACA+AGG | + | chr1.2:2601150-2601169 | MS.gene27333:CDS | 45.0% | |
| TCCTGTCTATAGAAGAGACC+CGG | + | chr1.2:2602741-2602760 | MS.gene27333:CDS | 45.0% | |
| TCTAATGGAGAAGCTGCGTT+TGG | + | chr1.2:2602405-2602424 | MS.gene27333:CDS | 45.0% | |
| TGAATCGGTGAACCCTAGAT+TGG | + | chr1.2:2602543-2602562 | MS.gene27333:CDS | 45.0% | |
| ! | CTCTTTTACCCTTCACATCC+TGG | + | chr1.2:2603162-2603181 | MS.gene27333:CDS | 45.0% |
| ! | CTGACATGTGTTTTGTGCGA+CGG | + | chr1.2:2601385-2601404 | MS.gene27333:intron | 45.0% |
| ! | GCCAAGAGTTTTGCCAATCT+AGG | - | chr1.2:2602559-2602578 | None:intergenic | 45.0% |
| ! | GTTTTCATCGGCGTTCTTCT+TGG | + | chr1.2:2601073-2601092 | MS.gene27333:CDS | 45.0% |
| ! | TGTGCTAACTTGTGCCCTAA+GGG | - | chr1.2:2602157-2602176 | None:intergenic | 45.0% |
| ! | TGTGCTTGGTGAGAAACACA+AGG | + | chr1.2:2602465-2602484 | MS.gene27333:CDS | 45.0% |
| ! | TTCTCAGTCACAAGGTTGGT+TGG | + | chr1.2:2601158-2601177 | MS.gene27333:intron | 45.0% |
| ! | TTGTGCTAACTTGTGCCCTA+AGG | - | chr1.2:2602158-2602177 | None:intergenic | 45.0% |
| ! | TTTTAGATCGCGTTGCCGAT+CGG | + | chr1.2:2603094-2603113 | MS.gene27333:CDS | 45.0% |
| !! | AAACACAAGGCTGGTCCTTT+TGG | + | chr1.2:2602478-2602497 | MS.gene27333:CDS | 45.0% |
| !! | ACGGAACAGTTTGTTGTGCT+TGG | + | chr1.2:2602451-2602470 | MS.gene27333:CDS | 45.0% |
| !! | GAGAATGGTCTGAGTTGATG+CGG | - | chr1.2:2601143-2601162 | None:intergenic | 45.0% |
| !! | TCTAGGGTTCACCGATTCAT+CGG | - | chr1.2:2602542-2602561 | None:intergenic | 45.0% |
| AACGCCGATGAAAACGGCAA+CGG | - | chr1.2:2601068-2601087 | None:intergenic | 50.0% | |
| AATGGAGAAGCTGCGTTTGG+CGG | + | chr1.2:2602408-2602427 | MS.gene27333:CDS | 50.0% | |
| AGAGCCTTGACAGTGCCAAA+AGG | - | chr1.2:2602496-2602515 | None:intergenic | 50.0% | |
| AGGTTACAGCGTTCTCCTCT+CGG | + | chr1.2:2602852-2602871 | MS.gene27333:CDS | 50.0% | |
| CTTGGTGAGAAACACAAGGC+TGG | + | chr1.2:2602469-2602488 | MS.gene27333:CDS | 50.0% | |
| GAGCTGAAGAAGCAGGTGAA+AGG | + | chr1.2:2602382-2602401 | MS.gene27333:CDS | 50.0% | |
| GATTCAATTGCCAAGTCGGG+TGG | + | chr1.2:2602775-2602794 | MS.gene27333:CDS | 50.0% | |
| GCAAGGAAAGGGTCATGCTA+CGG | + | chr1.2:2602432-2602451 | MS.gene27333:CDS | 50.0% | |
| TCCGAGATGCGGTGATTGAA+TGG | - | chr1.2:2601042-2601061 | None:intergenic | 50.0% | |
| TCCGGGTCTCTTCTATAGAC+AGG | - | chr1.2:2602745-2602764 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr1.2:2602145-2602164 | None:intergenic | 50.0% |
| ! | TGGTCCTTTTGGCACTGTCA+AGG | + | chr1.2:2602489-2602508 | MS.gene27333:CDS | 50.0% |
| !! | AATGGTCTGAGTTGATGCGG+TGG | - | chr1.2:2601140-2601159 | None:intergenic | 50.0% |
| !! | CTAGGGTTCACCGATTCATC+GGG | - | chr1.2:2602541-2602560 | None:intergenic | 50.0% |
| !!! | ATCGCCGTTGCCGTTTTCAT+CGG | + | chr1.2:2601061-2601080 | MS.gene27333:CDS | 50.0% |
| AGCATGATTCCCACCCGACT+TGG | - | chr1.2:2602788-2602807 | None:intergenic | 55.0% | |
| CGTTTGGCGGAGCAAGGAAA+GGG | + | chr1.2:2602421-2602440 | MS.gene27333:CDS | 55.0% | |
| GGTGGGAATCATGCTGTCTC+TGG | + | chr1.2:2602793-2602812 | MS.gene27333:CDS | 55.0% | |
| AAGCTGCGTTTGGCGGAGCA+AGG | + | chr1.2:2602415-2602434 | MS.gene27333:CDS | 60.0% | |
| GCGTTTGGCGGAGCAAGGAA+AGG | + | chr1.2:2602420-2602439 | MS.gene27333:CDS | 60.0% | |
| GCGCTCGACAGTTTCCCCGA+TGG | + | chr1.2:2603381-2603400 | MS.gene27333:CDS | 65.0% | |
| GGCAACGGCGATCCGAGATG+CGG | - | chr1.2:2601053-2601072 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2600998 | 2603413 | 2600998 | ID=MS.gene27333 |
| chr1.2 | mRNA | 2600998 | 2603413 | 2600998 | ID=MS.gene27333.t1;Parent=MS.gene27333 |
| chr1.2 | exon | 2600998 | 2601171 | 2600998 | ID=MS.gene27333.t1.exon1;Parent=MS.gene27333.t1 |
| chr1.2 | CDS | 2600998 | 2601171 | 2600998 | ID=cds.MS.gene27333.t1;Parent=MS.gene27333.t1 |
| chr1.2 | exon | 2602301 | 2603413 | 2602301 | ID=MS.gene27333.t1.exon2;Parent=MS.gene27333.t1 |
| chr1.2 | CDS | 2602301 | 2603413 | 2602301 | ID=cds.MS.gene27333.t1;Parent=MS.gene27333.t1 |
| Gene Sequence |
| Protein sequence |
