Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28359.t1 | XP_013456263.1 | 94.9 | 353 | 8 | 1 | 1 | 343 | 107 | 459 | 2.90E-197 | 697.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28359.t1 | B8AVF0 | 61.5 | 353 | 126 | 1 | 1 | 343 | 102 | 454 | 1.1e-131 | 471.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28359.t1 | A0A072UKL7 | 94.9 | 353 | 8 | 1 | 1 | 343 | 107 | 459 | 2.1e-197 | 697.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene28359 | 0.801478 | 8.84E-49 | -1.69E-46 |
MS.gene050381 | MS.gene28359 | 0.816103 | 6.57E-52 | -1.69E-46 |
MS.gene050883 | MS.gene28359 | 0.812738 | 3.65E-51 | -1.69E-46 |
MS.gene051127 | MS.gene28359 | 0.813925 | 2.00E-51 | -1.69E-46 |
MS.gene055124 | MS.gene28359 | 0.807397 | 5.16E-50 | -1.69E-46 |
MS.gene056748 | MS.gene28359 | 0.801238 | 9.89E-49 | -1.69E-46 |
MS.gene057261 | MS.gene28359 | 0.803928 | 2.76E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28359.t1 | MTR_4g066580 | 94.901 | 353 | 8 | 1 | 1 | 343 | 107 | 459 | 0.0 | 691 |
MS.gene28359.t1 | MTR_3g028720 | 89.518 | 353 | 27 | 1 | 1 | 343 | 106 | 458 | 0.0 | 662 |
MS.gene28359.t1 | MTR_3g028720 | 89.518 | 353 | 27 | 1 | 1 | 343 | 106 | 458 | 0.0 | 662 |
MS.gene28359.t1 | MTR_4g066580 | 94.099 | 322 | 9 | 1 | 1 | 312 | 107 | 428 | 0.0 | 624 |
MS.gene28359.t1 | MTR_3g028720 | 89.688 | 320 | 23 | 1 | 1 | 310 | 106 | 425 | 0.0 | 600 |
MS.gene28359.t1 | MTR_4g066630 | 76.487 | 353 | 73 | 1 | 1 | 343 | 107 | 459 | 0.0 | 580 |
MS.gene28359.t1 | MTR_4g066630 | 76.487 | 353 | 73 | 1 | 1 | 343 | 107 | 459 | 0.0 | 580 |
MS.gene28359.t1 | MTR_4g066590 | 76.771 | 353 | 72 | 1 | 1 | 343 | 101 | 453 | 0.0 | 578 |
MS.gene28359.t1 | MTR_3g028720 | 89.085 | 284 | 21 | 1 | 1 | 274 | 106 | 389 | 0.0 | 534 |
MS.gene28359.t1 | MTR_2g098540 | 70.255 | 353 | 95 | 1 | 1 | 343 | 99 | 451 | 0.0 | 529 |
MS.gene28359.t1 | MTR_2g098540 | 70.255 | 353 | 95 | 1 | 1 | 343 | 55 | 407 | 0.0 | 528 |
MS.gene28359.t1 | MTR_2g098520 | 69.688 | 353 | 97 | 1 | 1 | 343 | 102 | 454 | 0.0 | 526 |
MS.gene28359.t1 | MTR_2g098790 | 68.839 | 353 | 100 | 1 | 1 | 343 | 106 | 458 | 0.0 | 522 |
MS.gene28359.t1 | MTR_4g066210 | 67.989 | 353 | 103 | 1 | 1 | 343 | 111 | 463 | 0.0 | 520 |
MS.gene28359.t1 | MTR_4g066630 | 75.472 | 318 | 68 | 1 | 1 | 308 | 107 | 424 | 0.0 | 519 |
MS.gene28359.t1 | MTR_6g078450 | 68.555 | 353 | 101 | 1 | 1 | 343 | 104 | 456 | 0.0 | 516 |
MS.gene28359.t1 | MTR_6g078450 | 68.555 | 353 | 101 | 1 | 1 | 343 | 104 | 456 | 0.0 | 514 |
MS.gene28359.t1 | MTR_4g066240 | 68.555 | 353 | 101 | 1 | 1 | 343 | 104 | 456 | 0.0 | 512 |
MS.gene28359.t1 | MTR_4g066240 | 68.555 | 353 | 101 | 1 | 1 | 343 | 104 | 456 | 0.0 | 511 |
MS.gene28359.t1 | MTR_6g078330 | 68.839 | 353 | 100 | 1 | 1 | 343 | 1 | 353 | 0.0 | 509 |
MS.gene28359.t1 | MTR_6g078330 | 68.839 | 353 | 100 | 1 | 1 | 343 | 105 | 457 | 2.24e-180 | 509 |
MS.gene28359.t1 | MTR_4g066340 | 67.422 | 353 | 105 | 1 | 1 | 343 | 31 | 383 | 3.22e-180 | 506 |
MS.gene28359.t1 | MTR_4g066640 | 68.079 | 354 | 99 | 3 | 1 | 343 | 107 | 457 | 4.19e-179 | 506 |
MS.gene28359.t1 | MTR_4g067040 | 76.471 | 306 | 62 | 1 | 1 | 296 | 102 | 407 | 6.96e-179 | 501 |
MS.gene28359.t1 | MTR_6g078380 | 67.353 | 340 | 100 | 2 | 1 | 329 | 104 | 443 | 1.68e-169 | 482 |
MS.gene28359.t1 | MTR_6g078330 | 66.569 | 341 | 102 | 2 | 13 | 343 | 15 | 353 | 2.80e-167 | 473 |
MS.gene28359.t1 | MTR_4g067040 | 75.958 | 287 | 59 | 1 | 1 | 277 | 102 | 388 | 3.01e-166 | 469 |
MS.gene28359.t1 | MTR_5g071520 | 64.088 | 362 | 111 | 2 | 1 | 343 | 107 | 468 | 2.90e-165 | 471 |
MS.gene28359.t1 | MTR_4g066240 | 68.553 | 318 | 90 | 1 | 1 | 308 | 104 | 421 | 8.16e-164 | 464 |
MS.gene28359.t1 | MTR_4g066630 | 75.185 | 270 | 57 | 1 | 1 | 260 | 107 | 376 | 5.61e-155 | 440 |
MS.gene28359.t1 | MTR_4g066330 | 60.845 | 355 | 101 | 3 | 1 | 343 | 109 | 437 | 1.86e-151 | 435 |
MS.gene28359.t1 | MTR_4g066280 | 59.437 | 355 | 106 | 3 | 1 | 343 | 109 | 437 | 1.65e-148 | 428 |
MS.gene28359.t1 | MTR_3g026280 | 58.924 | 353 | 130 | 3 | 1 | 343 | 90 | 437 | 5.17e-147 | 424 |
MS.gene28359.t1 | MTR_6g078330 | 69.888 | 269 | 71 | 1 | 1 | 259 | 105 | 373 | 1.93e-140 | 403 |
MS.gene28359.t1 | MTR_4g023000 | 55.807 | 353 | 140 | 4 | 1 | 343 | 92 | 438 | 3.23e-137 | 399 |
MS.gene28359.t1 | MTR_4g066640 | 65.385 | 286 | 85 | 3 | 1 | 275 | 107 | 389 | 1.37e-135 | 391 |
MS.gene28359.t1 | MTR_4g015420 | 54.521 | 365 | 117 | 7 | 1 | 343 | 132 | 469 | 2.21e-129 | 380 |
MS.gene28359.t1 | MTR_3g026620 | 53.258 | 353 | 151 | 4 | 1 | 343 | 106 | 454 | 4.07e-128 | 376 |
MS.gene28359.t1 | MTR_3g026400 | 53.107 | 354 | 150 | 5 | 1 | 343 | 74 | 422 | 6.49e-128 | 375 |
MS.gene28359.t1 | MTR_3g026400 | 53.107 | 354 | 150 | 5 | 1 | 343 | 105 | 453 | 1.53e-127 | 375 |
MS.gene28359.t1 | MTR_2g043200 | 54.318 | 359 | 121 | 6 | 1 | 343 | 132 | 463 | 2.93e-124 | 367 |
MS.gene28359.t1 | MTR_4g015460 | 54.121 | 364 | 118 | 8 | 1 | 343 | 109 | 444 | 4.90e-124 | 366 |
MS.gene28359.t1 | MTR_5g044000 | 49.014 | 355 | 167 | 3 | 1 | 343 | 113 | 465 | 2.83e-115 | 344 |
MS.gene28359.t1 | MTR_4g083000 | 48.459 | 357 | 166 | 5 | 1 | 343 | 1 | 353 | 6.42e-115 | 339 |
MS.gene28359.t1 | MTR_4g083000 | 48.459 | 357 | 166 | 5 | 1 | 343 | 95 | 447 | 3.81e-114 | 340 |
MS.gene28359.t1 | MTR_4g081530 | 47.887 | 355 | 171 | 3 | 1 | 343 | 91 | 443 | 2.25e-109 | 328 |
MS.gene28359.t1 | MTR_0110s0040 | 47.025 | 353 | 172 | 4 | 1 | 343 | 110 | 457 | 9.99e-106 | 319 |
MS.gene28359.t1 | MTR_0110s0030 | 45.609 | 353 | 177 | 4 | 1 | 343 | 110 | 457 | 5.94e-103 | 312 |
MS.gene28359.t1 | MTR_3g026400 | 58.400 | 250 | 91 | 3 | 1 | 240 | 105 | 351 | 4.15e-102 | 305 |
MS.gene28359.t1 | MTR_4g131810 | 43.417 | 357 | 186 | 5 | 1 | 343 | 96 | 450 | 6.11e-98 | 300 |
MS.gene28359.t1 | MTR_2g079580 | 43.417 | 357 | 183 | 5 | 1 | 343 | 99 | 450 | 3.45e-97 | 298 |
MS.gene28359.t1 | MTR_2g079550 | 44.258 | 357 | 180 | 5 | 1 | 343 | 97 | 448 | 2.66e-96 | 295 |
MS.gene28359.t1 | MTR_2g022760 | 44.382 | 356 | 182 | 5 | 1 | 343 | 1 | 353 | 8.52e-95 | 288 |
MS.gene28359.t1 | MTR_3g033810 | 44.000 | 350 | 174 | 4 | 4 | 343 | 91 | 428 | 1.42e-94 | 290 |
MS.gene28359.t1 | MTR_2g079580 | 45.342 | 322 | 157 | 5 | 1 | 308 | 99 | 415 | 2.04e-94 | 287 |
MS.gene28359.t1 | MTR_2g022760 | 44.382 | 356 | 182 | 5 | 1 | 343 | 104 | 456 | 1.11e-93 | 288 |
MS.gene28359.t1 | MTR_3g033790 | 44.898 | 343 | 156 | 7 | 4 | 331 | 89 | 413 | 1.46e-93 | 287 |
MS.gene28359.t1 | MTR_4g016920 | 44.253 | 348 | 168 | 6 | 1 | 336 | 1 | 334 | 4.94e-92 | 281 |
MS.gene28359.t1 | MTR_7g068910 | 43.391 | 348 | 171 | 6 | 1 | 336 | 98 | 431 | 1.47e-91 | 283 |
MS.gene28359.t1 | MTR_7g068910 | 43.391 | 348 | 171 | 6 | 1 | 336 | 108 | 441 | 1.76e-91 | 283 |
MS.gene28359.t1 | MTR_4g016920 | 44.253 | 348 | 168 | 6 | 1 | 336 | 94 | 427 | 5.12e-91 | 281 |
MS.gene28359.t1 | MTR_7g068900 | 41.944 | 360 | 174 | 6 | 1 | 343 | 22 | 363 | 6.99e-91 | 280 |
MS.gene28359.t1 | MTR_7g033860 | 43.333 | 360 | 169 | 8 | 1 | 343 | 116 | 457 | 7.62e-91 | 281 |
MS.gene28359.t1 | MTR_4g131800 | 43.380 | 355 | 187 | 4 | 1 | 343 | 583 | 935 | 1.10e-89 | 290 |
MS.gene28359.t1 | MTR_2g022710 | 41.690 | 355 | 193 | 4 | 1 | 343 | 1 | 353 | 2.57e-89 | 274 |
MS.gene28359.t1 | MTR_4g016920 | 49.630 | 270 | 123 | 3 | 1 | 259 | 1 | 268 | 3.09e-89 | 270 |
MS.gene28359.t1 | MTR_2g022710 | 41.690 | 355 | 193 | 4 | 1 | 343 | 102 | 454 | 6.95e-89 | 275 |
MS.gene28359.t1 | MTR_2g022710 | 41.690 | 355 | 193 | 4 | 1 | 343 | 102 | 454 | 1.48e-88 | 274 |
MS.gene28359.t1 | MTR_2g022710 | 41.690 | 355 | 193 | 4 | 1 | 343 | 102 | 454 | 5.25e-88 | 274 |
MS.gene28359.t1 | MTR_5g068740 | 43.529 | 340 | 160 | 8 | 1 | 322 | 92 | 417 | 2.75e-87 | 272 |
MS.gene28359.t1 | MTR_0110s0040 | 50.752 | 266 | 118 | 3 | 1 | 256 | 110 | 372 | 9.04e-86 | 265 |
MS.gene28359.t1 | MTR_2g022710 | 43.125 | 320 | 168 | 4 | 1 | 308 | 102 | 419 | 1.51e-85 | 265 |
MS.gene28359.t1 | MTR_0108s0030 | 41.360 | 353 | 168 | 4 | 1 | 343 | 71 | 394 | 3.46e-85 | 265 |
MS.gene28359.t1 | MTR_7g051610 | 44.068 | 354 | 175 | 6 | 1 | 343 | 136 | 477 | 1.04e-82 | 261 |
MS.gene28359.t1 | MTR_1g088610 | 43.068 | 339 | 165 | 8 | 1 | 323 | 92 | 418 | 3.41e-82 | 262 |
MS.gene28359.t1 | MTR_7g051650 | 43.258 | 356 | 176 | 6 | 1 | 343 | 132 | 474 | 2.72e-81 | 257 |
MS.gene28359.t1 | MTR_7g051650 | 43.258 | 356 | 176 | 6 | 1 | 343 | 136 | 478 | 3.20e-81 | 257 |
MS.gene28359.t1 | MTR_7g051510 | 42.978 | 356 | 176 | 7 | 1 | 343 | 136 | 477 | 3.87e-81 | 256 |
MS.gene28359.t1 | MTR_2g022710 | 42.208 | 308 | 164 | 4 | 1 | 296 | 102 | 407 | 4.25e-79 | 248 |
MS.gene28359.t1 | MTR_7g056747 | 41.525 | 354 | 171 | 5 | 1 | 343 | 15 | 343 | 2.24e-77 | 243 |
MS.gene28359.t1 | MTR_2g022710 | 43.110 | 283 | 147 | 4 | 1 | 271 | 102 | 382 | 2.40e-71 | 228 |
MS.gene28359.t1 | MTR_1g088630 | 41.349 | 341 | 144 | 11 | 1 | 323 | 60 | 362 | 4.79e-71 | 228 |
MS.gene28359.t1 | MTR_1g088630 | 46.094 | 256 | 95 | 6 | 1 | 242 | 92 | 318 | 7.11e-69 | 220 |
MS.gene28359.t1 | MTR_1g088630 | 49.754 | 203 | 83 | 4 | 1 | 189 | 92 | 289 | 3.71e-60 | 196 |
MS.gene28359.t1 | MTR_0110s0020 | 54.194 | 155 | 68 | 2 | 1 | 155 | 110 | 261 | 7.81e-52 | 174 |
MS.gene28359.t1 | MTR_8g038650 | 41.593 | 113 | 58 | 2 | 132 | 244 | 48 | 152 | 3.60e-23 | 94.4 |
MS.gene28359.t1 | MTR_4g122980 | 25.466 | 322 | 182 | 10 | 2 | 314 | 188 | 460 | 4.34e-17 | 82.8 |
MS.gene28359.t1 | MTR_5g069350 | 40.909 | 110 | 44 | 4 | 237 | 336 | 48 | 146 | 1.96e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28359.t1 | AT2G44480 | 55.524 | 353 | 146 | 2 | 1 | 343 | 1 | 352 | 1.82e-143 | 412 |
MS.gene28359.t1 | AT2G44480 | 55.524 | 353 | 146 | 2 | 1 | 343 | 103 | 454 | 3.54e-142 | 412 |
MS.gene28359.t1 | AT2G44480 | 55.524 | 353 | 146 | 2 | 1 | 343 | 134 | 485 | 8.95e-142 | 412 |
MS.gene28359.t1 | AT5G42260 | 53.390 | 354 | 149 | 4 | 1 | 343 | 99 | 447 | 1.51e-130 | 382 |
MS.gene28359.t1 | AT2G44450 | 52.691 | 353 | 152 | 3 | 1 | 343 | 99 | 446 | 5.23e-130 | 381 |
MS.gene28359.t1 | AT5G44640 | 52.260 | 354 | 153 | 4 | 1 | 343 | 99 | 447 | 3.65e-129 | 379 |
MS.gene28359.t1 | AT1G51470 | 52.394 | 355 | 148 | 7 | 1 | 343 | 110 | 455 | 5.20e-125 | 369 |
MS.gene28359.t1 | AT3G60130 | 51.130 | 354 | 157 | 4 | 1 | 343 | 46 | 394 | 5.38e-125 | 367 |
MS.gene28359.t1 | AT3G60140 | 49.014 | 355 | 169 | 3 | 1 | 343 | 93 | 447 | 3.63e-124 | 369 |
MS.gene28359.t1 | AT3G60130 | 51.130 | 354 | 157 | 4 | 1 | 343 | 98 | 446 | 4.90e-124 | 366 |
MS.gene28359.t1 | AT1G47600 | 51.549 | 355 | 151 | 7 | 1 | 343 | 110 | 455 | 2.11e-122 | 362 |
MS.gene28359.t1 | AT5G24550 | 49.444 | 360 | 161 | 5 | 1 | 343 | 99 | 454 | 6.67e-122 | 361 |
MS.gene28359.t1 | AT1G47600 | 51.549 | 355 | 150 | 7 | 1 | 343 | 110 | 454 | 9.14e-122 | 360 |
MS.gene28359.t1 | AT2G44470 | 47.606 | 355 | 174 | 3 | 1 | 343 | 96 | 450 | 2.02e-120 | 355 |
MS.gene28359.t1 | AT3G60120 | 49.718 | 354 | 167 | 3 | 1 | 343 | 81 | 434 | 2.56e-120 | 357 |
MS.gene28359.t1 | AT5G24540 | 47.753 | 356 | 173 | 4 | 1 | 343 | 99 | 454 | 1.85e-118 | 350 |
MS.gene28359.t1 | AT2G44470 | 47.606 | 355 | 174 | 3 | 1 | 343 | 96 | 450 | 2.68e-118 | 354 |
MS.gene28359.t1 | AT3G60130 | 50.282 | 354 | 149 | 5 | 1 | 343 | 46 | 383 | 3.14e-118 | 349 |
MS.gene28359.t1 | AT5G24540 | 47.753 | 356 | 173 | 4 | 1 | 343 | 99 | 454 | 5.30e-117 | 349 |
MS.gene28359.t1 | AT2G25630 | 49.435 | 354 | 146 | 5 | 1 | 343 | 98 | 429 | 7.68e-117 | 347 |
MS.gene28359.t1 | AT2G44460 | 47.740 | 354 | 174 | 3 | 1 | 343 | 96 | 449 | 2.92e-116 | 348 |
MS.gene28359.t1 | AT5G54570 | 48.739 | 357 | 165 | 4 | 1 | 343 | 98 | 450 | 2.35e-115 | 342 |
MS.gene28359.t1 | AT5G54570 | 48.739 | 357 | 165 | 4 | 1 | 343 | 1 | 353 | 5.22e-115 | 340 |
MS.gene28359.t1 | AT5G25980 | 48.159 | 353 | 171 | 4 | 1 | 343 | 116 | 466 | 8.99e-115 | 341 |
MS.gene28359.t1 | AT5G25980 | 48.159 | 353 | 171 | 4 | 1 | 343 | 116 | 466 | 8.99e-115 | 341 |
MS.gene28359.t1 | AT5G54570 | 48.739 | 357 | 165 | 4 | 1 | 343 | 98 | 450 | 3.29e-114 | 342 |
MS.gene28359.t1 | AT5G25980 | 48.159 | 353 | 171 | 4 | 1 | 343 | 116 | 466 | 1.33e-113 | 340 |
MS.gene28359.t1 | AT3G60140 | 48.750 | 320 | 152 | 3 | 1 | 308 | 93 | 412 | 3.95e-113 | 336 |
MS.gene28359.t1 | AT2G44490 | 47.191 | 356 | 175 | 4 | 1 | 343 | 82 | 437 | 2.65e-110 | 332 |
MS.gene28359.t1 | AT1G26560 | 45.658 | 357 | 176 | 4 | 1 | 343 | 99 | 451 | 4.28e-110 | 330 |
MS.gene28359.t1 | AT3G03640 | 44.944 | 356 | 183 | 3 | 1 | 343 | 102 | 457 | 5.54e-109 | 328 |
MS.gene28359.t1 | AT2G32860 | 46.479 | 355 | 177 | 4 | 1 | 343 | 162 | 515 | 3.00e-108 | 329 |
MS.gene28359.t1 | AT3G18080 | 47.875 | 353 | 168 | 5 | 1 | 342 | 106 | 453 | 8.65e-108 | 325 |
MS.gene28359.t1 | AT2G32860 | 45.352 | 355 | 182 | 3 | 1 | 343 | 162 | 516 | 2.96e-106 | 324 |
MS.gene28359.t1 | AT5G26000 | 46.518 | 359 | 169 | 5 | 1 | 343 | 104 | 455 | 3.65e-104 | 313 |
MS.gene28359.t1 | AT3G09260 | 45.070 | 355 | 182 | 4 | 1 | 343 | 102 | 455 | 1.52e-103 | 314 |
MS.gene28359.t1 | AT5G26000 | 46.518 | 359 | 169 | 5 | 1 | 343 | 104 | 455 | 6.68e-103 | 313 |
MS.gene28359.t1 | AT2G44450 | 50.667 | 300 | 133 | 3 | 54 | 343 | 1 | 295 | 8.36e-103 | 306 |
MS.gene28359.t1 | AT2G44480 | 60.345 | 232 | 81 | 2 | 1 | 222 | 134 | 364 | 6.78e-101 | 303 |
MS.gene28359.t1 | AT5G28510 | 45.556 | 360 | 178 | 5 | 1 | 343 | 106 | 464 | 1.93e-100 | 306 |
MS.gene28359.t1 | AT1G75940 | 44.598 | 361 | 180 | 6 | 1 | 343 | 104 | 462 | 6.69e-100 | 305 |
MS.gene28359.t1 | AT3G21370 | 44.475 | 362 | 177 | 7 | 1 | 343 | 100 | 456 | 2.61e-99 | 303 |
MS.gene28359.t1 | AT3G18070 | 43.220 | 354 | 177 | 6 | 1 | 343 | 97 | 437 | 4.85e-98 | 299 |
MS.gene28359.t1 | AT2G44470 | 49.813 | 267 | 123 | 2 | 1 | 256 | 96 | 362 | 3.26e-97 | 293 |
MS.gene28359.t1 | AT3G18070 | 43.220 | 354 | 183 | 6 | 1 | 343 | 97 | 443 | 4.01e-97 | 297 |
MS.gene28359.t1 | AT1G66270 | 45.480 | 354 | 181 | 5 | 1 | 343 | 103 | 455 | 5.63e-97 | 297 |
MS.gene28359.t1 | AT1G66280 | 45.787 | 356 | 177 | 6 | 1 | 343 | 103 | 455 | 4.05e-96 | 295 |
MS.gene28359.t1 | AT1G52400 | 43.978 | 357 | 184 | 6 | 1 | 343 | 106 | 460 | 7.59e-96 | 292 |
MS.gene28359.t1 | AT1G52400 | 43.978 | 357 | 184 | 6 | 1 | 343 | 106 | 460 | 5.44e-95 | 292 |
MS.gene28359.t1 | AT1G52400 | 43.978 | 357 | 184 | 6 | 1 | 343 | 106 | 460 | 5.44e-95 | 292 |
MS.gene28359.t1 | AT5G36890 | 45.299 | 351 | 170 | 4 | 4 | 343 | 86 | 425 | 1.28e-94 | 290 |
MS.gene28359.t1 | AT5G36890 | 45.299 | 351 | 170 | 4 | 4 | 343 | 86 | 425 | 1.54e-94 | 290 |
MS.gene28359.t1 | AT1G66270 | 44.915 | 354 | 181 | 6 | 1 | 343 | 103 | 453 | 1.82e-93 | 288 |
MS.gene28359.t1 | AT1G02850 | 44.152 | 342 | 166 | 6 | 1 | 331 | 91 | 418 | 8.01e-92 | 283 |
MS.gene28359.t1 | AT5G48375 | 45.912 | 318 | 138 | 4 | 1 | 308 | 95 | 388 | 2.92e-91 | 280 |
MS.gene28359.t1 | AT2G44460 | 46.535 | 303 | 151 | 3 | 52 | 343 | 1 | 303 | 1.03e-90 | 278 |
MS.gene28359.t1 | AT4G27830 | 42.416 | 356 | 177 | 6 | 1 | 343 | 1 | 341 | 1.21e-89 | 275 |
MS.gene28359.t1 | AT4G27830 | 42.416 | 356 | 177 | 6 | 1 | 343 | 89 | 429 | 1.25e-88 | 275 |
MS.gene28359.t1 | AT1G02850 | 41.644 | 365 | 165 | 6 | 1 | 331 | 91 | 441 | 3.36e-88 | 275 |
MS.gene28359.t1 | AT1G02850 | 41.644 | 365 | 165 | 6 | 1 | 331 | 91 | 441 | 3.96e-88 | 274 |
MS.gene28359.t1 | AT4G27820 | 43.228 | 347 | 164 | 7 | 1 | 331 | 1 | 330 | 1.08e-87 | 270 |
MS.gene28359.t1 | AT4G27820 | 43.228 | 347 | 164 | 7 | 1 | 331 | 1 | 330 | 1.08e-87 | 270 |
MS.gene28359.t1 | AT1G02850 | 42.398 | 342 | 155 | 5 | 1 | 308 | 91 | 424 | 1.22e-87 | 270 |
MS.gene28359.t1 | AT4G27820 | 43.228 | 347 | 164 | 7 | 1 | 331 | 86 | 415 | 1.37e-86 | 270 |
MS.gene28359.t1 | AT1G60090 | 42.407 | 349 | 173 | 7 | 1 | 336 | 87 | 420 | 1.50e-86 | 270 |
MS.gene28359.t1 | AT4G21760 | 39.718 | 355 | 195 | 5 | 1 | 343 | 121 | 468 | 7.72e-86 | 269 |
MS.gene28359.t1 | AT1G51490 | 48.264 | 288 | 125 | 7 | 1 | 275 | 85 | 361 | 2.60e-84 | 261 |
MS.gene28359.t1 | AT1G61820 | 40.449 | 356 | 197 | 6 | 1 | 343 | 98 | 451 | 4.02e-84 | 264 |
MS.gene28359.t1 | AT1G02850 | 43.675 | 332 | 155 | 7 | 1 | 331 | 91 | 391 | 9.76e-84 | 261 |
MS.gene28359.t1 | AT1G60090 | 43.082 | 318 | 158 | 6 | 1 | 307 | 87 | 392 | 2.06e-83 | 262 |
MS.gene28359.t1 | AT4G22100 | 39.718 | 355 | 190 | 6 | 1 | 343 | 85 | 427 | 4.19e-82 | 258 |
MS.gene28359.t1 | AT4G21760 | 39.377 | 353 | 189 | 7 | 1 | 343 | 121 | 458 | 6.28e-80 | 253 |
MS.gene28359.t1 | AT1G61810 | 39.385 | 358 | 198 | 6 | 1 | 343 | 1 | 354 | 8.15e-80 | 250 |
MS.gene28359.t1 | AT2G44480 | 49.180 | 244 | 113 | 2 | 110 | 343 | 6 | 248 | 7.26e-79 | 244 |
MS.gene28359.t1 | AT1G61810 | 39.385 | 358 | 198 | 6 | 1 | 343 | 101 | 454 | 1.03e-78 | 250 |
MS.gene28359.t1 | AT1G61810 | 39.385 | 358 | 198 | 6 | 1 | 343 | 101 | 454 | 1.39e-78 | 250 |
MS.gene28359.t1 | AT3G62750 | 38.953 | 344 | 174 | 7 | 1 | 331 | 1 | 321 | 2.65e-78 | 246 |
MS.gene28359.t1 | AT3G62750 | 38.953 | 344 | 174 | 7 | 1 | 331 | 1 | 321 | 2.65e-78 | 246 |
MS.gene28359.t1 | AT3G62750 | 38.953 | 344 | 174 | 7 | 1 | 331 | 112 | 432 | 1.26e-77 | 245 |
MS.gene28359.t1 | AT3G62750 | 38.953 | 344 | 174 | 7 | 1 | 331 | 86 | 406 | 2.63e-77 | 246 |
MS.gene28359.t1 | AT1G45191 | 40.517 | 348 | 167 | 8 | 1 | 331 | 92 | 416 | 3.41e-77 | 246 |
MS.gene28359.t1 | AT3G62750 | 38.202 | 356 | 184 | 7 | 1 | 343 | 112 | 444 | 5.95e-77 | 245 |
MS.gene28359.t1 | AT1G60270 | 44.245 | 278 | 140 | 4 | 1 | 266 | 1 | 275 | 9.14e-77 | 238 |
MS.gene28359.t1 | AT3G18070 | 45.769 | 260 | 126 | 4 | 1 | 250 | 97 | 351 | 1.76e-76 | 240 |
MS.gene28359.t1 | AT1G61810 | 40.557 | 323 | 173 | 6 | 1 | 308 | 101 | 419 | 8.81e-76 | 239 |
MS.gene28359.t1 | AT1G60270 | 44.245 | 278 | 140 | 4 | 1 | 266 | 88 | 362 | 1.42e-75 | 238 |
MS.gene28359.t1 | AT3G62740 | 37.640 | 356 | 190 | 8 | 1 | 343 | 87 | 423 | 2.34e-75 | 238 |
MS.gene28359.t1 | AT1G45191 | 39.244 | 344 | 183 | 8 | 1 | 331 | 92 | 422 | 1.08e-74 | 239 |
MS.gene28359.t1 | AT3G62740 | 37.640 | 356 | 190 | 8 | 1 | 343 | 87 | 423 | 2.48e-74 | 238 |
MS.gene28359.t1 | AT1G45191 | 39.017 | 346 | 186 | 7 | 1 | 331 | 92 | 427 | 2.89e-74 | 238 |
MS.gene28359.t1 | AT1G45191 | 39.017 | 346 | 186 | 7 | 1 | 331 | 104 | 439 | 4.65e-74 | 238 |
MS.gene28359.t1 | AT1G45191 | 44.048 | 252 | 128 | 3 | 1 | 242 | 92 | 340 | 5.96e-71 | 227 |
MS.gene28359.t1 | AT1G45191 | 44.048 | 252 | 128 | 3 | 1 | 242 | 92 | 340 | 6.47e-71 | 226 |
MS.gene28359.t1 | AT3G62750 | 42.520 | 254 | 125 | 4 | 1 | 244 | 86 | 328 | 9.99e-70 | 222 |
MS.gene28359.t1 | AT3G62750 | 42.520 | 254 | 125 | 4 | 1 | 244 | 86 | 328 | 9.99e-70 | 222 |
MS.gene28359.t1 | AT3G18070 | 41.697 | 271 | 144 | 4 | 84 | 343 | 99 | 366 | 1.53e-69 | 223 |
MS.gene28359.t1 | AT3G62750 | 42.126 | 254 | 126 | 3 | 1 | 244 | 112 | 354 | 9.64e-69 | 222 |
MS.gene28359.t1 | AT1G61820 | 38.387 | 310 | 177 | 5 | 47 | 343 | 4 | 312 | 8.92e-67 | 215 |
MS.gene28359.t1 | AT3G18070 | 44.304 | 237 | 120 | 3 | 85 | 310 | 100 | 335 | 1.19e-65 | 211 |
MS.gene28359.t1 | AT3G18070 | 40.856 | 257 | 138 | 4 | 98 | 343 | 1 | 254 | 1.19e-63 | 205 |
MS.gene28359.t1 | AT3G18070 | 43.304 | 224 | 115 | 3 | 98 | 310 | 1 | 223 | 4.97e-60 | 193 |
MS.gene28359.t1 | AT1G61810 | 46.040 | 202 | 97 | 3 | 1 | 192 | 101 | 300 | 2.95e-55 | 183 |
MS.gene28359.t1 | AT5G16580 | 36.201 | 279 | 135 | 8 | 73 | 331 | 21 | 276 | 2.86e-42 | 149 |
MS.gene28359.t1 | AT3G06510 | 26.287 | 369 | 201 | 16 | 2 | 343 | 165 | 489 | 5.28e-16 | 79.7 |
MS.gene28359.t1 | AT3G06510 | 25.215 | 349 | 196 | 12 | 2 | 343 | 165 | 455 | 1.39e-15 | 78.2 |
Find 68 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGCTTTGTATTGAATTT+TGG | 0.170509 | 4.2:-38885205 | None:intergenic |
GAACTTTGTTTCAAGGAATT+TGG | 0.174740 | 4.2:+38884691 | MS.gene28359:CDS |
TCTATTTACATCACAGAAAA+TGG | 0.202373 | 4.2:+38885572 | MS.gene28359:CDS |
GCCCATTTGCATAGCCATTT+TGG | 0.215929 | 4.2:-38884762 | None:intergenic |
GAATCACCTCCGGTACAATT+TGG | 0.240733 | 4.2:-38884820 | None:intergenic |
AAATCTCAAAAGGGCGTAAT+AGG | 0.261458 | 4.2:+38884925 | MS.gene28359:CDS |
TAGTTACTTAACAGATTCTT+TGG | 0.293237 | 4.2:+38885321 | MS.gene28359:CDS |
TTCTGCGATCGAGCCCTATT+TGG | 0.357111 | 4.2:+38884840 | MS.gene28359:CDS |
CCATGGAGCTACAGCCAAAA+TGG | 0.357660 | 4.2:+38884748 | MS.gene28359:CDS |
TTGGTAATGCGTAACCAAAT+AGG | 0.369016 | 4.2:-38884854 | None:intergenic |
TTTATCTTCGATCTGCCATT+AGG | 0.377497 | 4.2:+38885798 | MS.gene28359:CDS |
GGATAATCTCCTGATGTTAG+TGG | 0.383730 | 4.2:-38885148 | None:intergenic |
CACCGGGTCGTTGCTCTAGT+TGG | 0.384109 | 4.2:+38884791 | MS.gene28359:CDS |
CAATATTCTAGACCAGGATA+TGG | 0.394308 | 4.2:-38884166 | None:intergenic |
TGCAAATGGGCGAATGGCAC+CGG | 0.395385 | 4.2:+38884774 | MS.gene28359:CDS |
TTGGATACTCACACTATAAG+AGG | 0.395389 | 4.2:-38884562 | None:intergenic |
AGCCAAAATGGCTATGCAAA+TGG | 0.396136 | 4.2:+38884760 | MS.gene28359:CDS |
GAATTGCAGTTGAGCGCAAC+GGG | 0.402711 | 4.2:+38885450 | MS.gene28359:intron |
GATAAAATAGATGACGATAA+TGG | 0.413825 | 4.2:-38885781 | None:intergenic |
TGGTAATGCGTAACCAAATA+GGG | 0.414370 | 4.2:-38884853 | None:intergenic |
CTATGCGGAACTTTGTTTCA+AGG | 0.415130 | 4.2:+38884684 | MS.gene28359:CDS |
GAAGCAATCTTAATACCAAT+AGG | 0.417398 | 4.2:-38885476 | None:intergenic |
TACTCTTCTTCTAAAGTTTG+AGG | 0.419592 | 4.2:-38884523 | None:intergenic |
TGGTGATAGAGTCAAGTATT+GGG | 0.427511 | 4.2:+38884711 | MS.gene28359:CDS |
AAAGTACAAGAAATCTCAAA+AGG | 0.432795 | 4.2:+38884915 | MS.gene28359:intron |
GCATAACCTTAGTAGCGAAT+TGG | 0.439687 | 4.2:+38884947 | MS.gene28359:CDS |
TTGGTGATAGAGTCAAGTAT+TGG | 0.444972 | 4.2:+38884710 | MS.gene28359:CDS |
CAAACTTTAGAAGAAGAGTA+TGG | 0.448230 | 4.2:+38884526 | MS.gene28359:CDS |
TATTGGTATTAAGATTGCTT+CGG | 0.448616 | 4.2:+38885478 | MS.gene28359:CDS |
ATCAGTTGAGGAATCACTCT+TGG | 0.455004 | 4.2:+38885739 | MS.gene28359:CDS |
ACTCTTCTTCTAAAGTTTGA+GGG | 0.459763 | 4.2:-38884522 | None:intergenic |
AAGCAAACTAAACTACTCAT+TGG | 0.461970 | 4.2:+38885220 | MS.gene28359:CDS |
GCCAAAATGGCTATGCAAAT+GGG | 0.463040 | 4.2:+38884761 | MS.gene28359:CDS |
CAAACAGATGGAAAGCTTAG+TGG | 0.481170 | 4.2:+38884305 | MS.gene28359:intron |
ATCAACGAGCTACTAGCTAA+TGG | 0.482370 | 4.2:+38884368 | MS.gene28359:CDS |
AAAAGATCACGAATTCCTCT+TGG | 0.485304 | 4.2:-38885518 | None:intergenic |
GAGCGCAACGGGAAACCTAT+TGG | 0.489460 | 4.2:+38885461 | MS.gene28359:CDS |
AAGATACCAATTCGCTACTA+AGG | 0.501344 | 4.2:-38884953 | None:intergenic |
TTTATGAATCCACTAACATC+AGG | 0.507515 | 4.2:+38885139 | MS.gene28359:CDS |
CAATGGAAAAGAGTCACTAA+TGG | 0.516481 | 4.2:-38884493 | None:intergenic |
CAGCGGCATGTGCAAGAAGT+TGG | 0.521028 | 4.2:-38884873 | None:intergenic |
GTATTAAGATTGCTTCGGAA+TGG | 0.531040 | 4.2:+38885483 | MS.gene28359:CDS |
AAAGAATCTGTTAAGTAACT+AGG | 0.540529 | 4.2:-38885319 | None:intergenic |
GGGTTACTTTGAATGAGCCA+TGG | 0.549157 | 4.2:+38884731 | MS.gene28359:CDS |
TGAGAGCCCTCGTTGGTGCT+AGG | 0.551450 | 4.2:+38885179 | MS.gene28359:CDS |
TGGTTGAATCCAAATTGTAC+CGG | 0.562770 | 4.2:+38884811 | MS.gene28359:CDS |
TGGATACTCACACTATAAGA+GGG | 0.574493 | 4.2:-38884561 | None:intergenic |
GCAAATGGGCGAATGGCACC+GGG | 0.577373 | 4.2:+38884775 | MS.gene28359:CDS |
TGGCTATGCAAATGGGCGAA+TGG | 0.578351 | 4.2:+38884768 | MS.gene28359:CDS |
CTCGATCGCAGAATCACCTC+CGG | 0.582972 | 4.2:-38884830 | None:intergenic |
GGTTAACAATGGTGCATCAG+AGG | 0.590321 | 4.2:-38885287 | None:intergenic |
TGATTCTACATTATCAGTTG+AGG | 0.592151 | 4.2:+38885727 | MS.gene28359:CDS |
AACCAACTAGAGCAACGACC+CGG | 0.592189 | 4.2:-38884793 | None:intergenic |
AAGTACAAGAAATCTCAAAA+GGG | 0.596464 | 4.2:+38884916 | MS.gene28359:intron |
TCGGATTTGGAATTTGAGAG+TGG | 0.600864 | 4.2:-38884976 | None:intergenic |
AGTGGTGGTGTCAATCAAGA+AGG | 0.603295 | 4.2:+38884323 | MS.gene28359:CDS |
TGAATTGCAGTTGAGCGCAA+CGG | 0.604196 | 4.2:+38885449 | MS.gene28359:intron |
TAAGTAACTAGGTCTAGCAT+TGG | 0.612411 | 4.2:-38885308 | None:intergenic |
ACTTGGCAATATTCTAGACC+AGG | 0.618905 | 4.2:-38884172 | None:intergenic |
TTGAATCCAAATTGTACCGG+AGG | 0.632737 | 4.2:+38884814 | MS.gene28359:CDS |
AAGTTTGAGGGAGATCCCAA+TGG | 0.634673 | 4.2:-38884510 | None:intergenic |
TGGTTGTACGTTTATCCAAG+AGG | 0.645166 | 4.2:+38885503 | MS.gene28359:CDS |
AAAAGCATGAGAGCCCTCGT+TGG | 0.645860 | 4.2:+38885172 | MS.gene28359:CDS |
GGTCTAGCATTGGTTAACAA+TGG | 0.647381 | 4.2:-38885298 | None:intergenic |
ACAGATGGAAAGCTTAGTGG+TGG | 0.663853 | 4.2:+38884308 | MS.gene28359:intron |
ACTTTAGAAGAAGAGTATGG+TGG | 0.678058 | 4.2:+38884529 | MS.gene28359:CDS |
TGGTAACCTAGCACCAACGA+GGG | 0.696965 | 4.2:-38885185 | None:intergenic |
TTGGTAACCTAGCACCAACG+AGG | 0.706174 | 4.2:-38885186 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTCAAATTTATTTATTTC+AGG | + | chr4.2:38885116-38885135 | MS.gene28359:intron | 10.0% |
!! | AATTGATTATCAAATATTAT+AGG | + | chr4.2:38884463-38884482 | MS.gene28359:intron | 10.0% |
!!! | TTTTTTAAGATACATAAAAA+TGG | - | chr4.2:38885068-38885087 | None:intergenic | 10.0% |
!! | AAAAAAAAATGACAAATTTG+TGG | + | chr4.2:38885082-38885101 | MS.gene28359:intron | 15.0% |
!! | TAAATTATAGAGTTGTAAAA+TGG | - | chr4.2:38885372-38885391 | None:intergenic | 15.0% |
!!! | AAAACTATGATTTTATATAC+AGG | - | chr4.2:38885610-38885629 | None:intergenic | 15.0% |
!! | AATTAATTTATCCAAACAGA+TGG | + | chr4.2:38884293-38884312 | MS.gene28359:intron | 20.0% |
!! | AATTCATCACGAAAAAAAAA+AGG | - | chr4.2:38885435-38885454 | None:intergenic | 20.0% |
!! | ATTCATCACGAAAAAAAAAA+GGG | - | chr4.2:38885434-38885453 | None:intergenic | 20.0% |
!!! | AATTCAATGTATTTTGACAA+TGG | + | chr4.2:38885405-38885424 | MS.gene28359:intron | 20.0% |
!!! | ATTCTGCATATTTTAATTGT+AGG | + | chr4.2:38885689-38885708 | MS.gene28359:intron | 20.0% |
!!! | ATTGGTTCATTTGATTTTAT+TGG | + | chr4.2:38885238-38885257 | MS.gene28359:CDS | 20.0% |
! | AAAGAATCTGTTAAGTAACT+AGG | - | chr4.2:38885322-38885341 | None:intergenic | 25.0% |
! | AAAGTACAAGAAATCTCAAA+AGG | + | chr4.2:38884915-38884934 | MS.gene28359:intron | 25.0% |
! | AAGTACAAGAAATCTCAAAA+GGG | + | chr4.2:38884916-38884935 | MS.gene28359:intron | 25.0% |
! | AGTCAAGTCAATATATATGA+TGG | + | chr4.2:38884196-38884215 | MS.gene28359:intron | 25.0% |
! | GATAAAATAGATGACGATAA+TGG | - | chr4.2:38885784-38885803 | None:intergenic | 25.0% |
! | TAGTTACTTAACAGATTCTT+TGG | + | chr4.2:38885321-38885340 | MS.gene28359:CDS | 25.0% |
! | TATAGAGTTGTAAAATGGAT+TGG | - | chr4.2:38885367-38885386 | None:intergenic | 25.0% |
! | TATTGGTATTAAGATTGCTT+CGG | + | chr4.2:38885478-38885497 | MS.gene28359:CDS | 25.0% |
! | TCTATTTACATCACAGAAAA+TGG | + | chr4.2:38885572-38885591 | MS.gene28359:CDS | 25.0% |
!! | AGGATTGTTGTATTTTTCTT+TGG | - | chr4.2:38885552-38885571 | None:intergenic | 25.0% |
!! | CTATGATTTTATATACAGGT+AGG | - | chr4.2:38885606-38885625 | None:intergenic | 25.0% |
!! | GAAGACAATAAACAATGTTT+TGG | - | chr4.2:38884584-38884603 | None:intergenic | 25.0% |
!! | GTTTGCTTTGTATTGAATTT+TGG | - | chr4.2:38885208-38885227 | None:intergenic | 25.0% |
!! | TTTTCTGTGATGTAAATAGA+AGG | - | chr4.2:38885572-38885591 | None:intergenic | 25.0% |
!!! | AAAAGATTTTCAAGACTATG+CGG | + | chr4.2:38884669-38884688 | MS.gene28359:CDS | 25.0% |
!!! | AGAGCAATTGATTTTATGTA+TGG | + | chr4.2:38885015-38885034 | MS.gene28359:CDS | 25.0% |
!!! | ATATATTGACTTGACTTACT+TGG | - | chr4.2:38884192-38884211 | None:intergenic | 25.0% |
!!! | CAATTGATTTTATGTATGGA+TGG | + | chr4.2:38885019-38885038 | MS.gene28359:CDS | 25.0% |
AAGCAAACTAAACTACTCAT+TGG | + | chr4.2:38885220-38885239 | MS.gene28359:CDS | 30.0% | |
GAAGCAATCTTAATACCAAT+AGG | - | chr4.2:38885479-38885498 | None:intergenic | 30.0% | |
TGATTCTACATTATCAGTTG+AGG | + | chr4.2:38885727-38885746 | MS.gene28359:CDS | 30.0% | |
TTTATGAATCCACTAACATC+AGG | + | chr4.2:38885139-38885158 | MS.gene28359:CDS | 30.0% | |
TTTCAACAGGTCATAGAAAA+TGG | - | chr4.2:38885647-38885666 | None:intergenic | 30.0% | |
! | ATTAGTGACTCTTTTCCATT+GGG | + | chr4.2:38884495-38884514 | MS.gene28359:CDS | 30.0% |
! | CAAACTTTAGAAGAAGAGTA+TGG | + | chr4.2:38884526-38884545 | MS.gene28359:CDS | 30.0% |
! | CATACACAATTGATTTCAAC+AGG | - | chr4.2:38885660-38885679 | None:intergenic | 30.0% |
! | GAACTTTGTTTCAAGGAATT+TGG | + | chr4.2:38884691-38884710 | MS.gene28359:CDS | 30.0% |
!! | ACTCTTCTTCTAAAGTTTGA+GGG | - | chr4.2:38884525-38884544 | None:intergenic | 30.0% |
!! | TACTCTTCTTCTAAAGTTTG+AGG | - | chr4.2:38884526-38884545 | None:intergenic | 30.0% |
AAAAGATCACGAATTCCTCT+TGG | - | chr4.2:38885521-38885540 | None:intergenic | 35.0% | |
AAGATACCAATTCGCTACTA+AGG | - | chr4.2:38884956-38884975 | None:intergenic | 35.0% | |
CAATATTCTAGACCAGGATA+TGG | - | chr4.2:38884169-38884188 | None:intergenic | 35.0% | |
CAATGGAAAAGAGTCACTAA+TGG | - | chr4.2:38884496-38884515 | None:intergenic | 35.0% | |
GTATTAAGATTGCTTCGGAA+TGG | + | chr4.2:38885483-38885502 | MS.gene28359:CDS | 35.0% | |
TAAGTAACTAGGTCTAGCAT+TGG | - | chr4.2:38885311-38885330 | None:intergenic | 35.0% | |
TGGATACTCACACTATAAGA+GGG | - | chr4.2:38884564-38884583 | None:intergenic | 35.0% | |
TGGTGATAGAGTCAAGTATT+GGG | + | chr4.2:38884711-38884730 | MS.gene28359:CDS | 35.0% | |
TGGTTGAATCCAAATTGTAC+CGG | + | chr4.2:38884811-38884830 | MS.gene28359:CDS | 35.0% | |
TTGGATACTCACACTATAAG+AGG | - | chr4.2:38884565-38884584 | None:intergenic | 35.0% | |
! | AAATCTCAAAAGGGCGTAAT+AGG | + | chr4.2:38884925-38884944 | MS.gene28359:CDS | 35.0% |
! | ACTTTAGAAGAAGAGTATGG+TGG | + | chr4.2:38884529-38884548 | MS.gene28359:CDS | 35.0% |
! | CATACAGATTTTCCATATCC+TGG | + | chr4.2:38884154-38884173 | MS.gene28359:CDS | 35.0% |
! | CATTAGTGACTCTTTTCCAT+TGG | + | chr4.2:38884494-38884513 | MS.gene28359:CDS | 35.0% |
! | TGGTAATGCGTAACCAAATA+GGG | - | chr4.2:38884856-38884875 | None:intergenic | 35.0% |
! | TTGGTGATAGAGTCAAGTAT+TGG | + | chr4.2:38884710-38884729 | MS.gene28359:CDS | 35.0% |
!! | TTGGTAATGCGTAACCAAAT+AGG | - | chr4.2:38884857-38884876 | None:intergenic | 35.0% |
ACTTGGCAATATTCTAGACC+AGG | - | chr4.2:38884175-38884194 | None:intergenic | 40.0% | |
AGCCAAAATGGCTATGCAAA+TGG | + | chr4.2:38884760-38884779 | MS.gene28359:CDS | 40.0% | |
ATCAACGAGCTACTAGCTAA+TGG | + | chr4.2:38884368-38884387 | MS.gene28359:CDS | 40.0% | |
ATCAGTTGAGGAATCACTCT+TGG | + | chr4.2:38885739-38885758 | MS.gene28359:CDS | 40.0% | |
CAAACAGATGGAAAGCTTAG+TGG | + | chr4.2:38884305-38884324 | MS.gene28359:intron | 40.0% | |
CACTAAGCTTTCCATCTGTT+TGG | - | chr4.2:38884307-38884326 | None:intergenic | 40.0% | |
CTTGTACACATCAACAACAG+CGG | - | chr4.2:38884893-38884912 | None:intergenic | 40.0% | |
GCATAACCTTAGTAGCGAAT+TGG | + | chr4.2:38884947-38884966 | MS.gene28359:CDS | 40.0% | |
GCCAAAATGGCTATGCAAAT+GGG | + | chr4.2:38884761-38884780 | MS.gene28359:CDS | 40.0% | |
GGATAATCTCCTGATGTTAG+TGG | - | chr4.2:38885151-38885170 | None:intergenic | 40.0% | |
TGGTTGTACGTTTATCCAAG+AGG | + | chr4.2:38885503-38885522 | MS.gene28359:CDS | 40.0% | |
TTGAATCCAAATTGTACCGG+AGG | + | chr4.2:38884814-38884833 | MS.gene28359:CDS | 40.0% | |
! | CTATGCGGAACTTTGTTTCA+AGG | + | chr4.2:38884684-38884703 | MS.gene28359:CDS | 40.0% |
! | TCGGATTTGGAATTTGAGAG+TGG | - | chr4.2:38884979-38884998 | None:intergenic | 40.0% |
!! | GGTCTAGCATTGGTTAACAA+TGG | - | chr4.2:38885301-38885320 | None:intergenic | 40.0% |
!!! | TCTTTCTGCTGCTTTTTGGT+CGG | - | chr4.2:38884998-38885017 | None:intergenic | 40.0% |
!!! | TTGCTCTTTCTGCTGCTTTT+TGG | - | chr4.2:38885002-38885021 | None:intergenic | 40.0% |
AAGTTTGAGGGAGATCCCAA+TGG | - | chr4.2:38884513-38884532 | None:intergenic | 45.0% | |
ACAGATGGAAAGCTTAGTGG+TGG | + | chr4.2:38884308-38884327 | MS.gene28359:intron | 45.0% | |
GAATCACCTCCGGTACAATT+TGG | - | chr4.2:38884823-38884842 | None:intergenic | 45.0% | |
GGTTAACAATGGTGCATCAG+AGG | - | chr4.2:38885290-38885309 | None:intergenic | 45.0% | |
TGAATTGCAGTTGAGCGCAA+CGG | + | chr4.2:38885449-38885468 | MS.gene28359:intron | 45.0% | |
! | AGTGGTGGTGTCAATCAAGA+AGG | + | chr4.2:38884323-38884342 | MS.gene28359:CDS | 45.0% |
! | GCCCATTTGCATAGCCATTT+TGG | - | chr4.2:38884765-38884784 | None:intergenic | 45.0% |
! | GGGTTACTTTGAATGAGCCA+TGG | + | chr4.2:38884731-38884750 | MS.gene28359:CDS | 45.0% |
!! | TGGATTGGTTGCTTACATGC+TGG | - | chr4.2:38885352-38885371 | None:intergenic | 45.0% |
!!! | TGCTGCTTTTTGGTCGGATT+TGG | - | chr4.2:38884992-38885011 | None:intergenic | 45.0% |
!!! | ATAAATTTGAATTAAATTTT+TGG | - | chr4.2:38885109-38885128 | None:intergenic | 5.0% |
AACCAACTAGAGCAACGACC+CGG | - | chr4.2:38884796-38884815 | None:intergenic | 50.0% | |
CCATGGAGCTACAGCCAAAA+TGG | + | chr4.2:38884748-38884767 | MS.gene28359:CDS | 50.0% | |
GAATTGCAGTTGAGCGCAAC+GGG | + | chr4.2:38885450-38885469 | MS.gene28359:intron | 50.0% | |
TGGCTATGCAAATGGGCGAA+TGG | + | chr4.2:38884768-38884787 | MS.gene28359:CDS | 50.0% | |
TGGTAACCTAGCACCAACGA+GGG | - | chr4.2:38885188-38885207 | None:intergenic | 50.0% | |
TTCTGCGATCGAGCCCTATT+TGG | + | chr4.2:38884840-38884859 | MS.gene28359:CDS | 50.0% | |
! | AAAAGCATGAGAGCCCTCGT+TGG | + | chr4.2:38885172-38885191 | MS.gene28359:CDS | 50.0% |
! | ACGAGGGCTCTCATGCTTTT+AGG | - | chr4.2:38885172-38885191 | None:intergenic | 50.0% |
! | TTGGTAACCTAGCACCAACG+AGG | - | chr4.2:38885189-38885208 | None:intergenic | 50.0% |
!!! | CCATTTTGGCTGTAGCTCCA+TGG | - | chr4.2:38884751-38884770 | None:intergenic | 50.0% |
CAGCGGCATGTGCAAGAAGT+TGG | - | chr4.2:38884876-38884895 | None:intergenic | 55.0% | |
CTCGATCGCAGAATCACCTC+CGG | - | chr4.2:38884833-38884852 | None:intergenic | 55.0% | |
GAGCGCAACGGGAAACCTAT+TGG | + | chr4.2:38885461-38885480 | MS.gene28359:CDS | 55.0% | |
TGCAAATGGGCGAATGGCAC+CGG | + | chr4.2:38884774-38884793 | MS.gene28359:CDS | 55.0% | |
CACCGGGTCGTTGCTCTAGT+TGG | + | chr4.2:38884791-38884810 | MS.gene28359:CDS | 60.0% | |
GCAAATGGGCGAATGGCACC+GGG | + | chr4.2:38884775-38884794 | MS.gene28359:CDS | 60.0% | |
! | TGAGAGCCCTCGTTGGTGCT+AGG | + | chr4.2:38885179-38885198 | MS.gene28359:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 38884132 | 38885819 | 38884132 | ID=MS.gene28359 |
chr4.2 | mRNA | 38884132 | 38885819 | 38884132 | ID=MS.gene28359.t1;Parent=MS.gene28359 |
chr4.2 | exon | 38884132 | 38884192 | 38884132 | ID=MS.gene28359.t1.exon1;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38884132 | 38884192 | 38884132 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38884312 | 38884389 | 38884312 | ID=MS.gene28359.t1.exon2;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38884312 | 38884389 | 38884312 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38884485 | 38884572 | 38884485 | ID=MS.gene28359.t1.exon3;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38884485 | 38884572 | 38884485 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38884669 | 38884894 | 38884669 | ID=MS.gene28359.t1.exon4;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38884669 | 38884894 | 38884669 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38884925 | 38885040 | 38884925 | ID=MS.gene28359.t1.exon5;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38884925 | 38885040 | 38884925 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38885138 | 38885355 | 38885138 | ID=MS.gene28359.t1.exon6;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38885138 | 38885355 | 38885138 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38885459 | 38885593 | 38885459 | ID=MS.gene28359.t1.exon7;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38885459 | 38885593 | 38885459 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
chr4.2 | exon | 38885711 | 38885819 | 38885711 | ID=MS.gene28359.t1.exon8;Parent=MS.gene28359.t1 |
chr4.2 | CDS | 38885711 | 38885819 | 38885711 | ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1 |
Gene Sequence |
Protein sequence |