AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28359


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28359.t1 MTR_4g066580 94.901 353 8 1 1 343 107 459 0.0 691
MS.gene28359.t1 MTR_3g028720 89.518 353 27 1 1 343 106 458 0.0 662
MS.gene28359.t1 MTR_3g028720 89.518 353 27 1 1 343 106 458 0.0 662
MS.gene28359.t1 MTR_4g066580 94.099 322 9 1 1 312 107 428 0.0 624
MS.gene28359.t1 MTR_3g028720 89.688 320 23 1 1 310 106 425 0.0 600
MS.gene28359.t1 MTR_4g066630 76.487 353 73 1 1 343 107 459 0.0 580
MS.gene28359.t1 MTR_4g066630 76.487 353 73 1 1 343 107 459 0.0 580
MS.gene28359.t1 MTR_4g066590 76.771 353 72 1 1 343 101 453 0.0 578
MS.gene28359.t1 MTR_3g028720 89.085 284 21 1 1 274 106 389 0.0 534
MS.gene28359.t1 MTR_2g098540 70.255 353 95 1 1 343 99 451 0.0 529
MS.gene28359.t1 MTR_2g098540 70.255 353 95 1 1 343 55 407 0.0 528
MS.gene28359.t1 MTR_2g098520 69.688 353 97 1 1 343 102 454 0.0 526
MS.gene28359.t1 MTR_2g098790 68.839 353 100 1 1 343 106 458 0.0 522
MS.gene28359.t1 MTR_4g066210 67.989 353 103 1 1 343 111 463 0.0 520
MS.gene28359.t1 MTR_4g066630 75.472 318 68 1 1 308 107 424 0.0 519
MS.gene28359.t1 MTR_6g078450 68.555 353 101 1 1 343 104 456 0.0 516
MS.gene28359.t1 MTR_6g078450 68.555 353 101 1 1 343 104 456 0.0 514
MS.gene28359.t1 MTR_4g066240 68.555 353 101 1 1 343 104 456 0.0 512
MS.gene28359.t1 MTR_4g066240 68.555 353 101 1 1 343 104 456 0.0 511
MS.gene28359.t1 MTR_6g078330 68.839 353 100 1 1 343 1 353 0.0 509
MS.gene28359.t1 MTR_6g078330 68.839 353 100 1 1 343 105 457 2.24e-180 509
MS.gene28359.t1 MTR_4g066340 67.422 353 105 1 1 343 31 383 3.22e-180 506
MS.gene28359.t1 MTR_4g066640 68.079 354 99 3 1 343 107 457 4.19e-179 506
MS.gene28359.t1 MTR_4g067040 76.471 306 62 1 1 296 102 407 6.96e-179 501
MS.gene28359.t1 MTR_6g078380 67.353 340 100 2 1 329 104 443 1.68e-169 482
MS.gene28359.t1 MTR_6g078330 66.569 341 102 2 13 343 15 353 2.80e-167 473
MS.gene28359.t1 MTR_4g067040 75.958 287 59 1 1 277 102 388 3.01e-166 469
MS.gene28359.t1 MTR_5g071520 64.088 362 111 2 1 343 107 468 2.90e-165 471
MS.gene28359.t1 MTR_4g066240 68.553 318 90 1 1 308 104 421 8.16e-164 464
MS.gene28359.t1 MTR_4g066630 75.185 270 57 1 1 260 107 376 5.61e-155 440
MS.gene28359.t1 MTR_4g066330 60.845 355 101 3 1 343 109 437 1.86e-151 435
MS.gene28359.t1 MTR_4g066280 59.437 355 106 3 1 343 109 437 1.65e-148 428
MS.gene28359.t1 MTR_3g026280 58.924 353 130 3 1 343 90 437 5.17e-147 424
MS.gene28359.t1 MTR_6g078330 69.888 269 71 1 1 259 105 373 1.93e-140 403
MS.gene28359.t1 MTR_4g023000 55.807 353 140 4 1 343 92 438 3.23e-137 399
MS.gene28359.t1 MTR_4g066640 65.385 286 85 3 1 275 107 389 1.37e-135 391
MS.gene28359.t1 MTR_4g015420 54.521 365 117 7 1 343 132 469 2.21e-129 380
MS.gene28359.t1 MTR_3g026620 53.258 353 151 4 1 343 106 454 4.07e-128 376
MS.gene28359.t1 MTR_3g026400 53.107 354 150 5 1 343 74 422 6.49e-128 375
MS.gene28359.t1 MTR_3g026400 53.107 354 150 5 1 343 105 453 1.53e-127 375
MS.gene28359.t1 MTR_2g043200 54.318 359 121 6 1 343 132 463 2.93e-124 367
MS.gene28359.t1 MTR_4g015460 54.121 364 118 8 1 343 109 444 4.90e-124 366
MS.gene28359.t1 MTR_5g044000 49.014 355 167 3 1 343 113 465 2.83e-115 344
MS.gene28359.t1 MTR_4g083000 48.459 357 166 5 1 343 1 353 6.42e-115 339
MS.gene28359.t1 MTR_4g083000 48.459 357 166 5 1 343 95 447 3.81e-114 340
MS.gene28359.t1 MTR_4g081530 47.887 355 171 3 1 343 91 443 2.25e-109 328
MS.gene28359.t1 MTR_0110s0040 47.025 353 172 4 1 343 110 457 9.99e-106 319
MS.gene28359.t1 MTR_0110s0030 45.609 353 177 4 1 343 110 457 5.94e-103 312
MS.gene28359.t1 MTR_3g026400 58.400 250 91 3 1 240 105 351 4.15e-102 305
MS.gene28359.t1 MTR_4g131810 43.417 357 186 5 1 343 96 450 6.11e-98 300
MS.gene28359.t1 MTR_2g079580 43.417 357 183 5 1 343 99 450 3.45e-97 298
MS.gene28359.t1 MTR_2g079550 44.258 357 180 5 1 343 97 448 2.66e-96 295
MS.gene28359.t1 MTR_2g022760 44.382 356 182 5 1 343 1 353 8.52e-95 288
MS.gene28359.t1 MTR_3g033810 44.000 350 174 4 4 343 91 428 1.42e-94 290
MS.gene28359.t1 MTR_2g079580 45.342 322 157 5 1 308 99 415 2.04e-94 287
MS.gene28359.t1 MTR_2g022760 44.382 356 182 5 1 343 104 456 1.11e-93 288
MS.gene28359.t1 MTR_3g033790 44.898 343 156 7 4 331 89 413 1.46e-93 287
MS.gene28359.t1 MTR_4g016920 44.253 348 168 6 1 336 1 334 4.94e-92 281
MS.gene28359.t1 MTR_7g068910 43.391 348 171 6 1 336 98 431 1.47e-91 283
MS.gene28359.t1 MTR_7g068910 43.391 348 171 6 1 336 108 441 1.76e-91 283
MS.gene28359.t1 MTR_4g016920 44.253 348 168 6 1 336 94 427 5.12e-91 281
MS.gene28359.t1 MTR_7g068900 41.944 360 174 6 1 343 22 363 6.99e-91 280
MS.gene28359.t1 MTR_7g033860 43.333 360 169 8 1 343 116 457 7.62e-91 281
MS.gene28359.t1 MTR_4g131800 43.380 355 187 4 1 343 583 935 1.10e-89 290
MS.gene28359.t1 MTR_2g022710 41.690 355 193 4 1 343 1 353 2.57e-89 274
MS.gene28359.t1 MTR_4g016920 49.630 270 123 3 1 259 1 268 3.09e-89 270
MS.gene28359.t1 MTR_2g022710 41.690 355 193 4 1 343 102 454 6.95e-89 275
MS.gene28359.t1 MTR_2g022710 41.690 355 193 4 1 343 102 454 1.48e-88 274
MS.gene28359.t1 MTR_2g022710 41.690 355 193 4 1 343 102 454 5.25e-88 274
MS.gene28359.t1 MTR_5g068740 43.529 340 160 8 1 322 92 417 2.75e-87 272
MS.gene28359.t1 MTR_0110s0040 50.752 266 118 3 1 256 110 372 9.04e-86 265
MS.gene28359.t1 MTR_2g022710 43.125 320 168 4 1 308 102 419 1.51e-85 265
MS.gene28359.t1 MTR_0108s0030 41.360 353 168 4 1 343 71 394 3.46e-85 265
MS.gene28359.t1 MTR_7g051610 44.068 354 175 6 1 343 136 477 1.04e-82 261
MS.gene28359.t1 MTR_1g088610 43.068 339 165 8 1 323 92 418 3.41e-82 262
MS.gene28359.t1 MTR_7g051650 43.258 356 176 6 1 343 132 474 2.72e-81 257
MS.gene28359.t1 MTR_7g051650 43.258 356 176 6 1 343 136 478 3.20e-81 257
MS.gene28359.t1 MTR_7g051510 42.978 356 176 7 1 343 136 477 3.87e-81 256
MS.gene28359.t1 MTR_2g022710 42.208 308 164 4 1 296 102 407 4.25e-79 248
MS.gene28359.t1 MTR_7g056747 41.525 354 171 5 1 343 15 343 2.24e-77 243
MS.gene28359.t1 MTR_2g022710 43.110 283 147 4 1 271 102 382 2.40e-71 228
MS.gene28359.t1 MTR_1g088630 41.349 341 144 11 1 323 60 362 4.79e-71 228
MS.gene28359.t1 MTR_1g088630 46.094 256 95 6 1 242 92 318 7.11e-69 220
MS.gene28359.t1 MTR_1g088630 49.754 203 83 4 1 189 92 289 3.71e-60 196
MS.gene28359.t1 MTR_0110s0020 54.194 155 68 2 1 155 110 261 7.81e-52 174
MS.gene28359.t1 MTR_8g038650 41.593 113 58 2 132 244 48 152 3.60e-23 94.4
MS.gene28359.t1 MTR_4g122980 25.466 322 182 10 2 314 188 460 4.34e-17 82.8
MS.gene28359.t1 MTR_5g069350 40.909 110 44 4 237 336 48 146 1.96e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28359.t1 AT2G44480 55.524 353 146 2 1 343 1 352 1.82e-143 412
MS.gene28359.t1 AT2G44480 55.524 353 146 2 1 343 103 454 3.54e-142 412
MS.gene28359.t1 AT2G44480 55.524 353 146 2 1 343 134 485 8.95e-142 412
MS.gene28359.t1 AT5G42260 53.390 354 149 4 1 343 99 447 1.51e-130 382
MS.gene28359.t1 AT2G44450 52.691 353 152 3 1 343 99 446 5.23e-130 381
MS.gene28359.t1 AT5G44640 52.260 354 153 4 1 343 99 447 3.65e-129 379
MS.gene28359.t1 AT1G51470 52.394 355 148 7 1 343 110 455 5.20e-125 369
MS.gene28359.t1 AT3G60130 51.130 354 157 4 1 343 46 394 5.38e-125 367
MS.gene28359.t1 AT3G60140 49.014 355 169 3 1 343 93 447 3.63e-124 369
MS.gene28359.t1 AT3G60130 51.130 354 157 4 1 343 98 446 4.90e-124 366
MS.gene28359.t1 AT1G47600 51.549 355 151 7 1 343 110 455 2.11e-122 362
MS.gene28359.t1 AT5G24550 49.444 360 161 5 1 343 99 454 6.67e-122 361
MS.gene28359.t1 AT1G47600 51.549 355 150 7 1 343 110 454 9.14e-122 360
MS.gene28359.t1 AT2G44470 47.606 355 174 3 1 343 96 450 2.02e-120 355
MS.gene28359.t1 AT3G60120 49.718 354 167 3 1 343 81 434 2.56e-120 357
MS.gene28359.t1 AT5G24540 47.753 356 173 4 1 343 99 454 1.85e-118 350
MS.gene28359.t1 AT2G44470 47.606 355 174 3 1 343 96 450 2.68e-118 354
MS.gene28359.t1 AT3G60130 50.282 354 149 5 1 343 46 383 3.14e-118 349
MS.gene28359.t1 AT5G24540 47.753 356 173 4 1 343 99 454 5.30e-117 349
MS.gene28359.t1 AT2G25630 49.435 354 146 5 1 343 98 429 7.68e-117 347
MS.gene28359.t1 AT2G44460 47.740 354 174 3 1 343 96 449 2.92e-116 348
MS.gene28359.t1 AT5G54570 48.739 357 165 4 1 343 98 450 2.35e-115 342
MS.gene28359.t1 AT5G54570 48.739 357 165 4 1 343 1 353 5.22e-115 340
MS.gene28359.t1 AT5G25980 48.159 353 171 4 1 343 116 466 8.99e-115 341
MS.gene28359.t1 AT5G25980 48.159 353 171 4 1 343 116 466 8.99e-115 341
MS.gene28359.t1 AT5G54570 48.739 357 165 4 1 343 98 450 3.29e-114 342
MS.gene28359.t1 AT5G25980 48.159 353 171 4 1 343 116 466 1.33e-113 340
MS.gene28359.t1 AT3G60140 48.750 320 152 3 1 308 93 412 3.95e-113 336
MS.gene28359.t1 AT2G44490 47.191 356 175 4 1 343 82 437 2.65e-110 332
MS.gene28359.t1 AT1G26560 45.658 357 176 4 1 343 99 451 4.28e-110 330
MS.gene28359.t1 AT3G03640 44.944 356 183 3 1 343 102 457 5.54e-109 328
MS.gene28359.t1 AT2G32860 46.479 355 177 4 1 343 162 515 3.00e-108 329
MS.gene28359.t1 AT3G18080 47.875 353 168 5 1 342 106 453 8.65e-108 325
MS.gene28359.t1 AT2G32860 45.352 355 182 3 1 343 162 516 2.96e-106 324
MS.gene28359.t1 AT5G26000 46.518 359 169 5 1 343 104 455 3.65e-104 313
MS.gene28359.t1 AT3G09260 45.070 355 182 4 1 343 102 455 1.52e-103 314
MS.gene28359.t1 AT5G26000 46.518 359 169 5 1 343 104 455 6.68e-103 313
MS.gene28359.t1 AT2G44450 50.667 300 133 3 54 343 1 295 8.36e-103 306
MS.gene28359.t1 AT2G44480 60.345 232 81 2 1 222 134 364 6.78e-101 303
MS.gene28359.t1 AT5G28510 45.556 360 178 5 1 343 106 464 1.93e-100 306
MS.gene28359.t1 AT1G75940 44.598 361 180 6 1 343 104 462 6.69e-100 305
MS.gene28359.t1 AT3G21370 44.475 362 177 7 1 343 100 456 2.61e-99 303
MS.gene28359.t1 AT3G18070 43.220 354 177 6 1 343 97 437 4.85e-98 299
MS.gene28359.t1 AT2G44470 49.813 267 123 2 1 256 96 362 3.26e-97 293
MS.gene28359.t1 AT3G18070 43.220 354 183 6 1 343 97 443 4.01e-97 297
MS.gene28359.t1 AT1G66270 45.480 354 181 5 1 343 103 455 5.63e-97 297
MS.gene28359.t1 AT1G66280 45.787 356 177 6 1 343 103 455 4.05e-96 295
MS.gene28359.t1 AT1G52400 43.978 357 184 6 1 343 106 460 7.59e-96 292
MS.gene28359.t1 AT1G52400 43.978 357 184 6 1 343 106 460 5.44e-95 292
MS.gene28359.t1 AT1G52400 43.978 357 184 6 1 343 106 460 5.44e-95 292
MS.gene28359.t1 AT5G36890 45.299 351 170 4 4 343 86 425 1.28e-94 290
MS.gene28359.t1 AT5G36890 45.299 351 170 4 4 343 86 425 1.54e-94 290
MS.gene28359.t1 AT1G66270 44.915 354 181 6 1 343 103 453 1.82e-93 288
MS.gene28359.t1 AT1G02850 44.152 342 166 6 1 331 91 418 8.01e-92 283
MS.gene28359.t1 AT5G48375 45.912 318 138 4 1 308 95 388 2.92e-91 280
MS.gene28359.t1 AT2G44460 46.535 303 151 3 52 343 1 303 1.03e-90 278
MS.gene28359.t1 AT4G27830 42.416 356 177 6 1 343 1 341 1.21e-89 275
MS.gene28359.t1 AT4G27830 42.416 356 177 6 1 343 89 429 1.25e-88 275
MS.gene28359.t1 AT1G02850 41.644 365 165 6 1 331 91 441 3.36e-88 275
MS.gene28359.t1 AT1G02850 41.644 365 165 6 1 331 91 441 3.96e-88 274
MS.gene28359.t1 AT4G27820 43.228 347 164 7 1 331 1 330 1.08e-87 270
MS.gene28359.t1 AT4G27820 43.228 347 164 7 1 331 1 330 1.08e-87 270
MS.gene28359.t1 AT1G02850 42.398 342 155 5 1 308 91 424 1.22e-87 270
MS.gene28359.t1 AT4G27820 43.228 347 164 7 1 331 86 415 1.37e-86 270
MS.gene28359.t1 AT1G60090 42.407 349 173 7 1 336 87 420 1.50e-86 270
MS.gene28359.t1 AT4G21760 39.718 355 195 5 1 343 121 468 7.72e-86 269
MS.gene28359.t1 AT1G51490 48.264 288 125 7 1 275 85 361 2.60e-84 261
MS.gene28359.t1 AT1G61820 40.449 356 197 6 1 343 98 451 4.02e-84 264
MS.gene28359.t1 AT1G02850 43.675 332 155 7 1 331 91 391 9.76e-84 261
MS.gene28359.t1 AT1G60090 43.082 318 158 6 1 307 87 392 2.06e-83 262
MS.gene28359.t1 AT4G22100 39.718 355 190 6 1 343 85 427 4.19e-82 258
MS.gene28359.t1 AT4G21760 39.377 353 189 7 1 343 121 458 6.28e-80 253
MS.gene28359.t1 AT1G61810 39.385 358 198 6 1 343 1 354 8.15e-80 250
MS.gene28359.t1 AT2G44480 49.180 244 113 2 110 343 6 248 7.26e-79 244
MS.gene28359.t1 AT1G61810 39.385 358 198 6 1 343 101 454 1.03e-78 250
MS.gene28359.t1 AT1G61810 39.385 358 198 6 1 343 101 454 1.39e-78 250
MS.gene28359.t1 AT3G62750 38.953 344 174 7 1 331 1 321 2.65e-78 246
MS.gene28359.t1 AT3G62750 38.953 344 174 7 1 331 1 321 2.65e-78 246
MS.gene28359.t1 AT3G62750 38.953 344 174 7 1 331 112 432 1.26e-77 245
MS.gene28359.t1 AT3G62750 38.953 344 174 7 1 331 86 406 2.63e-77 246
MS.gene28359.t1 AT1G45191 40.517 348 167 8 1 331 92 416 3.41e-77 246
MS.gene28359.t1 AT3G62750 38.202 356 184 7 1 343 112 444 5.95e-77 245
MS.gene28359.t1 AT1G60270 44.245 278 140 4 1 266 1 275 9.14e-77 238
MS.gene28359.t1 AT3G18070 45.769 260 126 4 1 250 97 351 1.76e-76 240
MS.gene28359.t1 AT1G61810 40.557 323 173 6 1 308 101 419 8.81e-76 239
MS.gene28359.t1 AT1G60270 44.245 278 140 4 1 266 88 362 1.42e-75 238
MS.gene28359.t1 AT3G62740 37.640 356 190 8 1 343 87 423 2.34e-75 238
MS.gene28359.t1 AT1G45191 39.244 344 183 8 1 331 92 422 1.08e-74 239
MS.gene28359.t1 AT3G62740 37.640 356 190 8 1 343 87 423 2.48e-74 238
MS.gene28359.t1 AT1G45191 39.017 346 186 7 1 331 92 427 2.89e-74 238
MS.gene28359.t1 AT1G45191 39.017 346 186 7 1 331 104 439 4.65e-74 238
MS.gene28359.t1 AT1G45191 44.048 252 128 3 1 242 92 340 5.96e-71 227
MS.gene28359.t1 AT1G45191 44.048 252 128 3 1 242 92 340 6.47e-71 226
MS.gene28359.t1 AT3G62750 42.520 254 125 4 1 244 86 328 9.99e-70 222
MS.gene28359.t1 AT3G62750 42.520 254 125 4 1 244 86 328 9.99e-70 222
MS.gene28359.t1 AT3G18070 41.697 271 144 4 84 343 99 366 1.53e-69 223
MS.gene28359.t1 AT3G62750 42.126 254 126 3 1 244 112 354 9.64e-69 222
MS.gene28359.t1 AT1G61820 38.387 310 177 5 47 343 4 312 8.92e-67 215
MS.gene28359.t1 AT3G18070 44.304 237 120 3 85 310 100 335 1.19e-65 211
MS.gene28359.t1 AT3G18070 40.856 257 138 4 98 343 1 254 1.19e-63 205
MS.gene28359.t1 AT3G18070 43.304 224 115 3 98 310 1 223 4.97e-60 193
MS.gene28359.t1 AT1G61810 46.040 202 97 3 1 192 101 300 2.95e-55 183
MS.gene28359.t1 AT5G16580 36.201 279 135 8 73 331 21 276 2.86e-42 149
MS.gene28359.t1 AT3G06510 26.287 369 201 16 2 343 165 489 5.28e-16 79.7
MS.gene28359.t1 AT3G06510 25.215 349 196 12 2 343 165 455 1.39e-15 78.2

Find 68 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCTTTGTATTGAATTT+TGG 0.170509 4.2:-38885205 None:intergenic
GAACTTTGTTTCAAGGAATT+TGG 0.174740 4.2:+38884691 MS.gene28359:CDS
TCTATTTACATCACAGAAAA+TGG 0.202373 4.2:+38885572 MS.gene28359:CDS
GCCCATTTGCATAGCCATTT+TGG 0.215929 4.2:-38884762 None:intergenic
GAATCACCTCCGGTACAATT+TGG 0.240733 4.2:-38884820 None:intergenic
AAATCTCAAAAGGGCGTAAT+AGG 0.261458 4.2:+38884925 MS.gene28359:CDS
TAGTTACTTAACAGATTCTT+TGG 0.293237 4.2:+38885321 MS.gene28359:CDS
TTCTGCGATCGAGCCCTATT+TGG 0.357111 4.2:+38884840 MS.gene28359:CDS
CCATGGAGCTACAGCCAAAA+TGG 0.357660 4.2:+38884748 MS.gene28359:CDS
TTGGTAATGCGTAACCAAAT+AGG 0.369016 4.2:-38884854 None:intergenic
TTTATCTTCGATCTGCCATT+AGG 0.377497 4.2:+38885798 MS.gene28359:CDS
GGATAATCTCCTGATGTTAG+TGG 0.383730 4.2:-38885148 None:intergenic
CACCGGGTCGTTGCTCTAGT+TGG 0.384109 4.2:+38884791 MS.gene28359:CDS
CAATATTCTAGACCAGGATA+TGG 0.394308 4.2:-38884166 None:intergenic
TGCAAATGGGCGAATGGCAC+CGG 0.395385 4.2:+38884774 MS.gene28359:CDS
TTGGATACTCACACTATAAG+AGG 0.395389 4.2:-38884562 None:intergenic
AGCCAAAATGGCTATGCAAA+TGG 0.396136 4.2:+38884760 MS.gene28359:CDS
GAATTGCAGTTGAGCGCAAC+GGG 0.402711 4.2:+38885450 MS.gene28359:intron
GATAAAATAGATGACGATAA+TGG 0.413825 4.2:-38885781 None:intergenic
TGGTAATGCGTAACCAAATA+GGG 0.414370 4.2:-38884853 None:intergenic
CTATGCGGAACTTTGTTTCA+AGG 0.415130 4.2:+38884684 MS.gene28359:CDS
GAAGCAATCTTAATACCAAT+AGG 0.417398 4.2:-38885476 None:intergenic
TACTCTTCTTCTAAAGTTTG+AGG 0.419592 4.2:-38884523 None:intergenic
TGGTGATAGAGTCAAGTATT+GGG 0.427511 4.2:+38884711 MS.gene28359:CDS
AAAGTACAAGAAATCTCAAA+AGG 0.432795 4.2:+38884915 MS.gene28359:intron
GCATAACCTTAGTAGCGAAT+TGG 0.439687 4.2:+38884947 MS.gene28359:CDS
TTGGTGATAGAGTCAAGTAT+TGG 0.444972 4.2:+38884710 MS.gene28359:CDS
CAAACTTTAGAAGAAGAGTA+TGG 0.448230 4.2:+38884526 MS.gene28359:CDS
TATTGGTATTAAGATTGCTT+CGG 0.448616 4.2:+38885478 MS.gene28359:CDS
ATCAGTTGAGGAATCACTCT+TGG 0.455004 4.2:+38885739 MS.gene28359:CDS
ACTCTTCTTCTAAAGTTTGA+GGG 0.459763 4.2:-38884522 None:intergenic
AAGCAAACTAAACTACTCAT+TGG 0.461970 4.2:+38885220 MS.gene28359:CDS
GCCAAAATGGCTATGCAAAT+GGG 0.463040 4.2:+38884761 MS.gene28359:CDS
CAAACAGATGGAAAGCTTAG+TGG 0.481170 4.2:+38884305 MS.gene28359:intron
ATCAACGAGCTACTAGCTAA+TGG 0.482370 4.2:+38884368 MS.gene28359:CDS
AAAAGATCACGAATTCCTCT+TGG 0.485304 4.2:-38885518 None:intergenic
GAGCGCAACGGGAAACCTAT+TGG 0.489460 4.2:+38885461 MS.gene28359:CDS
AAGATACCAATTCGCTACTA+AGG 0.501344 4.2:-38884953 None:intergenic
TTTATGAATCCACTAACATC+AGG 0.507515 4.2:+38885139 MS.gene28359:CDS
CAATGGAAAAGAGTCACTAA+TGG 0.516481 4.2:-38884493 None:intergenic
CAGCGGCATGTGCAAGAAGT+TGG 0.521028 4.2:-38884873 None:intergenic
GTATTAAGATTGCTTCGGAA+TGG 0.531040 4.2:+38885483 MS.gene28359:CDS
AAAGAATCTGTTAAGTAACT+AGG 0.540529 4.2:-38885319 None:intergenic
GGGTTACTTTGAATGAGCCA+TGG 0.549157 4.2:+38884731 MS.gene28359:CDS
TGAGAGCCCTCGTTGGTGCT+AGG 0.551450 4.2:+38885179 MS.gene28359:CDS
TGGTTGAATCCAAATTGTAC+CGG 0.562770 4.2:+38884811 MS.gene28359:CDS
TGGATACTCACACTATAAGA+GGG 0.574493 4.2:-38884561 None:intergenic
GCAAATGGGCGAATGGCACC+GGG 0.577373 4.2:+38884775 MS.gene28359:CDS
TGGCTATGCAAATGGGCGAA+TGG 0.578351 4.2:+38884768 MS.gene28359:CDS
CTCGATCGCAGAATCACCTC+CGG 0.582972 4.2:-38884830 None:intergenic
GGTTAACAATGGTGCATCAG+AGG 0.590321 4.2:-38885287 None:intergenic
TGATTCTACATTATCAGTTG+AGG 0.592151 4.2:+38885727 MS.gene28359:CDS
AACCAACTAGAGCAACGACC+CGG 0.592189 4.2:-38884793 None:intergenic
AAGTACAAGAAATCTCAAAA+GGG 0.596464 4.2:+38884916 MS.gene28359:intron
TCGGATTTGGAATTTGAGAG+TGG 0.600864 4.2:-38884976 None:intergenic
AGTGGTGGTGTCAATCAAGA+AGG 0.603295 4.2:+38884323 MS.gene28359:CDS
TGAATTGCAGTTGAGCGCAA+CGG 0.604196 4.2:+38885449 MS.gene28359:intron
TAAGTAACTAGGTCTAGCAT+TGG 0.612411 4.2:-38885308 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 4.2:-38884172 None:intergenic
TTGAATCCAAATTGTACCGG+AGG 0.632737 4.2:+38884814 MS.gene28359:CDS
AAGTTTGAGGGAGATCCCAA+TGG 0.634673 4.2:-38884510 None:intergenic
TGGTTGTACGTTTATCCAAG+AGG 0.645166 4.2:+38885503 MS.gene28359:CDS
AAAAGCATGAGAGCCCTCGT+TGG 0.645860 4.2:+38885172 MS.gene28359:CDS
GGTCTAGCATTGGTTAACAA+TGG 0.647381 4.2:-38885298 None:intergenic
ACAGATGGAAAGCTTAGTGG+TGG 0.663853 4.2:+38884308 MS.gene28359:intron
ACTTTAGAAGAAGAGTATGG+TGG 0.678058 4.2:+38884529 MS.gene28359:CDS
TGGTAACCTAGCACCAACGA+GGG 0.696965 4.2:-38885185 None:intergenic
TTGGTAACCTAGCACCAACG+AGG 0.706174 4.2:-38885186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAATTTATTTATTTC+AGG + chr4.2:38885116-38885135 MS.gene28359:intron 10.0%
!! AATTGATTATCAAATATTAT+AGG + chr4.2:38884463-38884482 MS.gene28359:intron 10.0%
!!! TTTTTTAAGATACATAAAAA+TGG - chr4.2:38885068-38885087 None:intergenic 10.0%
!! AAAAAAAAATGACAAATTTG+TGG + chr4.2:38885082-38885101 MS.gene28359:intron 15.0%
!! TAAATTATAGAGTTGTAAAA+TGG - chr4.2:38885372-38885391 None:intergenic 15.0%
!!! AAAACTATGATTTTATATAC+AGG - chr4.2:38885610-38885629 None:intergenic 15.0%
!! AATTAATTTATCCAAACAGA+TGG + chr4.2:38884293-38884312 MS.gene28359:intron 20.0%
!! AATTCATCACGAAAAAAAAA+AGG - chr4.2:38885435-38885454 None:intergenic 20.0%
!! ATTCATCACGAAAAAAAAAA+GGG - chr4.2:38885434-38885453 None:intergenic 20.0%
!!! AATTCAATGTATTTTGACAA+TGG + chr4.2:38885405-38885424 MS.gene28359:intron 20.0%
!!! ATTCTGCATATTTTAATTGT+AGG + chr4.2:38885689-38885708 MS.gene28359:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr4.2:38885238-38885257 MS.gene28359:CDS 20.0%
! AAAGAATCTGTTAAGTAACT+AGG - chr4.2:38885322-38885341 None:intergenic 25.0%
! AAAGTACAAGAAATCTCAAA+AGG + chr4.2:38884915-38884934 MS.gene28359:intron 25.0%
! AAGTACAAGAAATCTCAAAA+GGG + chr4.2:38884916-38884935 MS.gene28359:intron 25.0%
! AGTCAAGTCAATATATATGA+TGG + chr4.2:38884196-38884215 MS.gene28359:intron 25.0%
! GATAAAATAGATGACGATAA+TGG - chr4.2:38885784-38885803 None:intergenic 25.0%
! TAGTTACTTAACAGATTCTT+TGG + chr4.2:38885321-38885340 MS.gene28359:CDS 25.0%
! TATAGAGTTGTAAAATGGAT+TGG - chr4.2:38885367-38885386 None:intergenic 25.0%
! TATTGGTATTAAGATTGCTT+CGG + chr4.2:38885478-38885497 MS.gene28359:CDS 25.0%
! TCTATTTACATCACAGAAAA+TGG + chr4.2:38885572-38885591 MS.gene28359:CDS 25.0%
!! AGGATTGTTGTATTTTTCTT+TGG - chr4.2:38885552-38885571 None:intergenic 25.0%
!! CTATGATTTTATATACAGGT+AGG - chr4.2:38885606-38885625 None:intergenic 25.0%
!! GAAGACAATAAACAATGTTT+TGG - chr4.2:38884584-38884603 None:intergenic 25.0%
!! GTTTGCTTTGTATTGAATTT+TGG - chr4.2:38885208-38885227 None:intergenic 25.0%
!! TTTTCTGTGATGTAAATAGA+AGG - chr4.2:38885572-38885591 None:intergenic 25.0%
!!! AAAAGATTTTCAAGACTATG+CGG + chr4.2:38884669-38884688 MS.gene28359:CDS 25.0%
!!! AGAGCAATTGATTTTATGTA+TGG + chr4.2:38885015-38885034 MS.gene28359:CDS 25.0%
!!! ATATATTGACTTGACTTACT+TGG - chr4.2:38884192-38884211 None:intergenic 25.0%
!!! CAATTGATTTTATGTATGGA+TGG + chr4.2:38885019-38885038 MS.gene28359:CDS 25.0%
AAGCAAACTAAACTACTCAT+TGG + chr4.2:38885220-38885239 MS.gene28359:CDS 30.0%
GAAGCAATCTTAATACCAAT+AGG - chr4.2:38885479-38885498 None:intergenic 30.0%
TGATTCTACATTATCAGTTG+AGG + chr4.2:38885727-38885746 MS.gene28359:CDS 30.0%
TTTATGAATCCACTAACATC+AGG + chr4.2:38885139-38885158 MS.gene28359:CDS 30.0%
TTTCAACAGGTCATAGAAAA+TGG - chr4.2:38885647-38885666 None:intergenic 30.0%
! ATTAGTGACTCTTTTCCATT+GGG + chr4.2:38884495-38884514 MS.gene28359:CDS 30.0%
! CAAACTTTAGAAGAAGAGTA+TGG + chr4.2:38884526-38884545 MS.gene28359:CDS 30.0%
! CATACACAATTGATTTCAAC+AGG - chr4.2:38885660-38885679 None:intergenic 30.0%
! GAACTTTGTTTCAAGGAATT+TGG + chr4.2:38884691-38884710 MS.gene28359:CDS 30.0%
!! ACTCTTCTTCTAAAGTTTGA+GGG - chr4.2:38884525-38884544 None:intergenic 30.0%
!! TACTCTTCTTCTAAAGTTTG+AGG - chr4.2:38884526-38884545 None:intergenic 30.0%
AAAAGATCACGAATTCCTCT+TGG - chr4.2:38885521-38885540 None:intergenic 35.0%
AAGATACCAATTCGCTACTA+AGG - chr4.2:38884956-38884975 None:intergenic 35.0%
CAATATTCTAGACCAGGATA+TGG - chr4.2:38884169-38884188 None:intergenic 35.0%
CAATGGAAAAGAGTCACTAA+TGG - chr4.2:38884496-38884515 None:intergenic 35.0%
GTATTAAGATTGCTTCGGAA+TGG + chr4.2:38885483-38885502 MS.gene28359:CDS 35.0%
TAAGTAACTAGGTCTAGCAT+TGG - chr4.2:38885311-38885330 None:intergenic 35.0%
TGGATACTCACACTATAAGA+GGG - chr4.2:38884564-38884583 None:intergenic 35.0%
TGGTGATAGAGTCAAGTATT+GGG + chr4.2:38884711-38884730 MS.gene28359:CDS 35.0%
TGGTTGAATCCAAATTGTAC+CGG + chr4.2:38884811-38884830 MS.gene28359:CDS 35.0%
TTGGATACTCACACTATAAG+AGG - chr4.2:38884565-38884584 None:intergenic 35.0%
! AAATCTCAAAAGGGCGTAAT+AGG + chr4.2:38884925-38884944 MS.gene28359:CDS 35.0%
! ACTTTAGAAGAAGAGTATGG+TGG + chr4.2:38884529-38884548 MS.gene28359:CDS 35.0%
! CATACAGATTTTCCATATCC+TGG + chr4.2:38884154-38884173 MS.gene28359:CDS 35.0%
! CATTAGTGACTCTTTTCCAT+TGG + chr4.2:38884494-38884513 MS.gene28359:CDS 35.0%
! TGGTAATGCGTAACCAAATA+GGG - chr4.2:38884856-38884875 None:intergenic 35.0%
! TTGGTGATAGAGTCAAGTAT+TGG + chr4.2:38884710-38884729 MS.gene28359:CDS 35.0%
!! TTGGTAATGCGTAACCAAAT+AGG - chr4.2:38884857-38884876 None:intergenic 35.0%
ACTTGGCAATATTCTAGACC+AGG - chr4.2:38884175-38884194 None:intergenic 40.0%
AGCCAAAATGGCTATGCAAA+TGG + chr4.2:38884760-38884779 MS.gene28359:CDS 40.0%
ATCAACGAGCTACTAGCTAA+TGG + chr4.2:38884368-38884387 MS.gene28359:CDS 40.0%
ATCAGTTGAGGAATCACTCT+TGG + chr4.2:38885739-38885758 MS.gene28359:CDS 40.0%
CAAACAGATGGAAAGCTTAG+TGG + chr4.2:38884305-38884324 MS.gene28359:intron 40.0%
CACTAAGCTTTCCATCTGTT+TGG - chr4.2:38884307-38884326 None:intergenic 40.0%
CTTGTACACATCAACAACAG+CGG - chr4.2:38884893-38884912 None:intergenic 40.0%
GCATAACCTTAGTAGCGAAT+TGG + chr4.2:38884947-38884966 MS.gene28359:CDS 40.0%
GCCAAAATGGCTATGCAAAT+GGG + chr4.2:38884761-38884780 MS.gene28359:CDS 40.0%
GGATAATCTCCTGATGTTAG+TGG - chr4.2:38885151-38885170 None:intergenic 40.0%
TGGTTGTACGTTTATCCAAG+AGG + chr4.2:38885503-38885522 MS.gene28359:CDS 40.0%
TTGAATCCAAATTGTACCGG+AGG + chr4.2:38884814-38884833 MS.gene28359:CDS 40.0%
! CTATGCGGAACTTTGTTTCA+AGG + chr4.2:38884684-38884703 MS.gene28359:CDS 40.0%
! TCGGATTTGGAATTTGAGAG+TGG - chr4.2:38884979-38884998 None:intergenic 40.0%
!! GGTCTAGCATTGGTTAACAA+TGG - chr4.2:38885301-38885320 None:intergenic 40.0%
!!! TCTTTCTGCTGCTTTTTGGT+CGG - chr4.2:38884998-38885017 None:intergenic 40.0%
!!! TTGCTCTTTCTGCTGCTTTT+TGG - chr4.2:38885002-38885021 None:intergenic 40.0%
AAGTTTGAGGGAGATCCCAA+TGG - chr4.2:38884513-38884532 None:intergenic 45.0%
ACAGATGGAAAGCTTAGTGG+TGG + chr4.2:38884308-38884327 MS.gene28359:intron 45.0%
GAATCACCTCCGGTACAATT+TGG - chr4.2:38884823-38884842 None:intergenic 45.0%
GGTTAACAATGGTGCATCAG+AGG - chr4.2:38885290-38885309 None:intergenic 45.0%
TGAATTGCAGTTGAGCGCAA+CGG + chr4.2:38885449-38885468 MS.gene28359:intron 45.0%
! AGTGGTGGTGTCAATCAAGA+AGG + chr4.2:38884323-38884342 MS.gene28359:CDS 45.0%
! GCCCATTTGCATAGCCATTT+TGG - chr4.2:38884765-38884784 None:intergenic 45.0%
! GGGTTACTTTGAATGAGCCA+TGG + chr4.2:38884731-38884750 MS.gene28359:CDS 45.0%
!! TGGATTGGTTGCTTACATGC+TGG - chr4.2:38885352-38885371 None:intergenic 45.0%
!!! TGCTGCTTTTTGGTCGGATT+TGG - chr4.2:38884992-38885011 None:intergenic 45.0%
!!! ATAAATTTGAATTAAATTTT+TGG - chr4.2:38885109-38885128 None:intergenic 5.0%
AACCAACTAGAGCAACGACC+CGG - chr4.2:38884796-38884815 None:intergenic 50.0%
CCATGGAGCTACAGCCAAAA+TGG + chr4.2:38884748-38884767 MS.gene28359:CDS 50.0%
GAATTGCAGTTGAGCGCAAC+GGG + chr4.2:38885450-38885469 MS.gene28359:intron 50.0%
TGGCTATGCAAATGGGCGAA+TGG + chr4.2:38884768-38884787 MS.gene28359:CDS 50.0%
TGGTAACCTAGCACCAACGA+GGG - chr4.2:38885188-38885207 None:intergenic 50.0%
TTCTGCGATCGAGCCCTATT+TGG + chr4.2:38884840-38884859 MS.gene28359:CDS 50.0%
! AAAAGCATGAGAGCCCTCGT+TGG + chr4.2:38885172-38885191 MS.gene28359:CDS 50.0%
! ACGAGGGCTCTCATGCTTTT+AGG - chr4.2:38885172-38885191 None:intergenic 50.0%
! TTGGTAACCTAGCACCAACG+AGG - chr4.2:38885189-38885208 None:intergenic 50.0%
!!! CCATTTTGGCTGTAGCTCCA+TGG - chr4.2:38884751-38884770 None:intergenic 50.0%
CAGCGGCATGTGCAAGAAGT+TGG - chr4.2:38884876-38884895 None:intergenic 55.0%
CTCGATCGCAGAATCACCTC+CGG - chr4.2:38884833-38884852 None:intergenic 55.0%
GAGCGCAACGGGAAACCTAT+TGG + chr4.2:38885461-38885480 MS.gene28359:CDS 55.0%
TGCAAATGGGCGAATGGCAC+CGG + chr4.2:38884774-38884793 MS.gene28359:CDS 55.0%
CACCGGGTCGTTGCTCTAGT+TGG + chr4.2:38884791-38884810 MS.gene28359:CDS 60.0%
GCAAATGGGCGAATGGCACC+GGG + chr4.2:38884775-38884794 MS.gene28359:CDS 60.0%
! TGAGAGCCCTCGTTGGTGCT+AGG + chr4.2:38885179-38885198 MS.gene28359:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 38884132 38885819 38884132 ID=MS.gene28359
chr4.2 mRNA 38884132 38885819 38884132 ID=MS.gene28359.t1;Parent=MS.gene28359
chr4.2 exon 38884132 38884192 38884132 ID=MS.gene28359.t1.exon1;Parent=MS.gene28359.t1
chr4.2 CDS 38884132 38884192 38884132 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38884312 38884389 38884312 ID=MS.gene28359.t1.exon2;Parent=MS.gene28359.t1
chr4.2 CDS 38884312 38884389 38884312 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38884485 38884572 38884485 ID=MS.gene28359.t1.exon3;Parent=MS.gene28359.t1
chr4.2 CDS 38884485 38884572 38884485 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38884669 38884894 38884669 ID=MS.gene28359.t1.exon4;Parent=MS.gene28359.t1
chr4.2 CDS 38884669 38884894 38884669 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38884925 38885040 38884925 ID=MS.gene28359.t1.exon5;Parent=MS.gene28359.t1
chr4.2 CDS 38884925 38885040 38884925 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38885138 38885355 38885138 ID=MS.gene28359.t1.exon6;Parent=MS.gene28359.t1
chr4.2 CDS 38885138 38885355 38885138 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38885459 38885593 38885459 ID=MS.gene28359.t1.exon7;Parent=MS.gene28359.t1
chr4.2 CDS 38885459 38885593 38885459 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
chr4.2 exon 38885711 38885819 38885711 ID=MS.gene28359.t1.exon8;Parent=MS.gene28359.t1
chr4.2 CDS 38885711 38885819 38885711 ID=cds.MS.gene28359.t1;Parent=MS.gene28359.t1
Gene Sequence

>MS.gene28359

ATGAAAGATATGAACTTAGATTCATACAGATTTTCCATATCCTGGTCTAGAATATTGCCAAGTAAGTCAAGTCAATATATATGATGGATATTCTCAACTAATTTTTATCGTAATAGAGATGTTTAACTTAATTTAAATATTTATCAATATCTTTTTATAATAATTAATTTATCCAAACAGATGGAAAGCTTAGTGGTGGTGTCAATCAAGAAGGAATTAACTATTACAACAATCTCATCAACGAGCTACTAGCTAATGGTTAGAAATGATTCATACGTTTATTTCACTAACTTATTTTCATATATATGTTTGTTGATGAAATAACATAATTAATTGATTATCAAATATTATAGGTATACAACCATTAGTGACTCTTTTCCATTGGGATCTCCCTCAAACTTTAGAAGAAGAGTATGGTGGCTTCTTAAGCCCTCTTATAGTGTGAGTATCCAAAACATTGTTTATTGTCTTCATAATATATATACACTATATATTTAAATTTGATTTTGATTTGTTACATGTTTCTTAAATTTTCAGAAAAGATTTTCAAGACTATGCGGAACTTTGTTTCAAGGAATTTGGTGATAGAGTCAAGTATTGGGTTACTTTGAATGAGCCATGGAGCTACAGCCAAAATGGCTATGCAAATGGGCGAATGGCACCGGGTCGTTGCTCTAGTTGGTTGAATCCAAATTGTACCGGAGGTGATTCTGCGATCGAGCCCTATTTGGTTACGCATTACCAACTTCTTGCACATGCCGCTGTTGTTGATGTGTACAAGAAAAAGTACAAGAAATCTCAAAAGGGCGTAATAGGCATAACCTTAGTAGCGAATTGGTATCTTCCACTCTCAAATTCCAAATCCGACCAAAAAGCAGCAGAAAGAGCAATTGATTTTATGTATGGATGGTAAGAGCTCATCTATAACTCTTTCCATTTTTATGTATCTTAAAAAAAAATGACAAATTTGTGGACCAAAAATTTAATTCAAATTTATTTATTTCAGGTTTATGAATCCACTAACATCAGGAGATTATCCTAAAAGCATGAGAGCCCTCGTTGGTGCTAGGTTACCAAAATTCAATACAAAGCAAACTAAACTACTCATTGGTTCATTTGATTTTATTGGTCTAAACTATTACTCTTCAACTTATGCCTCTGATGCACCATTGTTAACCAATGCTAGACCTAGTTACTTAACAGATTCTTTGGTCAATCCAGCATGTAAGCAACCAATCCATTTTACAACTCTATAATTTACTGAAACACTTTAAATTCAATGTATTTTGACAATGGATACCCTTTTTTTTTTCGTGATGAATTGCAGTTGAGCGCAACGGGAAACCTATTGGTATTAAGATTGCTTCGGAATGGTTGTACGTTTATCCAAGAGGAATTCGTGATCTTTTGTTATACACCAAAGAAAAATACAACAATCCTTCTATTTACATCACAGAAAATGGTAAAAACACCTACCTGTATATAAAATCATAGTTTTCTTGTCTTGAATTACCATTTTCTATGACCTGTTGAAATCAATTGTGTATGACAATTTTTATTCTGCATATTTTAATTGTAGGTATAAATGAATACGATGATTCTACATTATCAGTTGAGGAATCACTCTTGGATACTTTTCGAATTGATTACCATTATCGTCATCTATTTTATCTTCGATCTGCCATTAG

Protein sequence

>MS.gene28359.t1

MKDMNLDSYRFSISWSRILPNGKLSGGVNQEGINYYNNLINELLANGIQPLVTLFHWDLPQTLEEEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYLVTHYQLLAHAAKSQKGVIGITLVANWYLPLSNSKSDQKAAERAIDFMYGWFMNPLTSGDYPKSMRALVGARLPKFNTKQTKLLIGSFDFIGLNYYSSTYASDAPLLTNARPSYLTDSLVNPAFERNGKPIGIKIASEWLYVYPRGIRDLLLYTKEKYNNPSIYITENGINEYDDSTLSVEESLLDTFRIDYHYRHLFYLRSAI