AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28602

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28602.t1 MTR_2g034990 89.407 236 25 0 1 236 1 236 8.73e-155 439
MS.gene28602.t1 MTR_2g035020 80.085 236 47 0 1 236 1 236 2.75e-130 377
MS.gene28602.t1 MTR_5g029800 75.424 236 54 1 1 236 1 232 1.44e-124 362
MS.gene28602.t1 MTR_7g012120 72.458 236 63 1 1 236 6 239 1.32e-115 339
MS.gene28602.t1 MTR_5g067170 72.996 237 60 2 1 236 1 234 2.12e-115 338
MS.gene28602.t1 MTR_4g117960 68.220 236 73 1 1 236 1 234 3.66e-111 328
MS.gene28602.t1 MTR_4g117980 62.712 236 88 0 1 236 1 236 2.04e-102 306
MS.gene28602.t1 MTR_6g035185 62.712 236 88 0 1 236 1 236 4.47e-98 295
MS.gene28602.t1 MTR_6g035265 60.593 236 84 2 1 236 1 227 1.45e-93 283
MS.gene28602.t1 MTR_8g032950 61.277 235 88 1 2 236 3 234 1.91e-90 275
MS.gene28602.t1 MTR_0536s0020 50.435 230 104 2 7 236 14 233 4.23e-76 238
MS.gene28602.t1 MTR_4g117890 51.739 230 101 2 7 236 9 228 5.68e-76 238
MS.gene28602.t1 MTR_4g118000 52.174 230 97 2 7 236 8 224 5.77e-75 235
MS.gene28602.t1 MTR_0536s0010 49.784 231 104 3 6 236 16 234 2.88e-74 233
MS.gene28602.t1 MTR_4g117950 48.485 231 108 2 6 236 1 220 1.74e-71 226
MS.gene28602.t1 MTR_4g117970 65.385 156 50 1 81 236 56 207 8.34e-67 212
MS.gene28602.t1 MTR_2g035040 78.151 119 26 0 118 236 23 141 3.80e-64 204
MS.gene28602.t1 MTR_2g035050 80.870 115 22 0 1 115 1 115 2.90e-55 173
MS.gene28602.t1 MTR_4g031800 38.095 231 135 4 8 236 6 230 1.35e-49 169
MS.gene28602.t1 MTR_0536s0030 44.565 184 92 2 38 221 7 180 1.55e-48 163
MS.gene28602.t1 MTR_4g485630 33.617 235 141 5 10 236 8 235 1.23e-35 132
MS.gene28602.t1 MTR_7g070800 34.874 238 132 6 6 231 1 227 1.33e-35 132
MS.gene28602.t1 MTR_5g016660 32.627 236 146 4 10 236 9 240 2.38e-35 131
MS.gene28602.t1 MTR_7g070740 32.917 240 144 5 1 231 1 232 5.68e-35 130
MS.gene28602.t1 MTR_7g070780 34.711 242 137 5 1 231 1 232 6.29e-35 130
MS.gene28602.t1 MTR_6g035295 34.034 238 142 6 10 236 11 244 7.70e-35 130
MS.gene28602.t1 MTR_7g070860 35.169 236 130 6 8 231 4 228 8.32e-34 127
MS.gene28602.t1 MTR_5g039900 30.932 236 150 4 10 236 12 243 1.89e-33 126
MS.gene28602.t1 MTR_5g045970 31.381 239 138 8 15 236 20 249 3.75e-33 125
MS.gene28602.t1 MTR_7g055710 30.932 236 143 4 1 223 1 229 1.33e-32 124
MS.gene28602.t1 MTR_7g070930 33.333 231 137 5 10 231 13 235 5.17e-32 122
MS.gene28602.t1 MTR_7g071040 32.083 240 146 5 1 231 7 238 2.06e-31 120
MS.gene28602.t1 MTR_5g045960 32.917 240 141 9 12 236 8 242 2.09e-31 120
MS.gene28602.t1 MTR_7g117405 33.617 235 141 7 13 236 12 242 4.79e-31 119
MS.gene28602.t1 MTR_7g070910 32.231 242 150 5 1 233 1 237 8.08e-31 119
MS.gene28602.t1 MTR_7g070660 31.667 240 147 5 1 231 1 232 1.02e-30 118
MS.gene28602.t1 MTR_8g066610 30.088 226 142 4 9 221 7 229 1.37e-30 118
MS.gene28602.t1 MTR_5g040030 30.544 239 152 6 8 236 11 245 2.14e-30 117
MS.gene28602.t1 MTR_7g070610 31.624 234 146 5 1 223 1 231 3.48e-30 117
MS.gene28602.t1 MTR_4g108250 30.612 245 150 6 1 233 1 237 9.54e-29 113
MS.gene28602.t1 MTR_1g062380 30.802 237 142 9 15 236 20 249 1.36e-28 112
MS.gene28602.t1 MTR_7g102450 33.333 234 130 8 13 236 11 228 2.06e-28 112
MS.gene28602.t1 MTR_7g070940 32.000 225 141 4 8 223 6 227 7.97e-28 110
MS.gene28602.t1 MTR_7g102560 31.197 234 139 9 4 223 1 226 9.95e-28 110
MS.gene28602.t1 MTR_7g070810 32.000 225 141 4 8 223 6 227 1.28e-27 110
MS.gene28602.t1 MTR_7g039570 29.787 235 150 6 10 234 13 242 5.24e-27 104
MS.gene28602.t1 MTR_7g071050 34.043 188 114 3 2 187 4 183 9.17e-27 107
MS.gene28602.t1 MTR_4g485620 28.634 227 145 5 23 236 1 223 1.53e-26 107
MS.gene28602.t1 MTR_4g024020 32.301 226 136 7 11 221 7 230 2.00e-26 106
MS.gene28602.t1 MTR_7g102490 29.778 225 142 6 11 221 7 229 1.50e-25 104
MS.gene28602.t1 MTR_7g102550 30.380 237 143 9 13 233 9 239 2.70e-25 103
MS.gene28602.t1 MTR_4g485590 30.508 236 123 5 12 236 10 215 6.11e-25 102
MS.gene28602.t1 MTR_7g102460 29.911 224 142 6 11 221 7 228 1.95e-24 101
MS.gene28602.t1 MTR_1g040310 30.864 243 151 6 4 236 8 243 2.64e-24 100
MS.gene28602.t1 MTR_7g070870 29.778 225 143 4 8 223 16 234 1.83e-23 98.2
MS.gene28602.t1 MTR_7g470590 36.000 125 77 2 1 122 1 125 3.56e-21 85.9
MS.gene28602.t1 MTR_7g070570 36.000 125 77 2 1 122 1 125 3.56e-21 85.9
MS.gene28602.t1 MTR_4g485640 30.374 214 119 6 19 221 217 411 3.73e-19 86.3
MS.gene28602.t1 MTR_8g044140 29.949 197 123 5 36 222 2 193 2.13e-18 84.0
MS.gene28602.t1 MTR_7g102520 28.033 239 146 10 14 236 15 243 4.88e-18 82.8
MS.gene28602.t1 MTR_7g067330 31.169 154 98 5 9 158 5 154 1.58e-12 66.6
MS.gene28602.t1 MTR_8g068330 30.216 139 92 3 7 144 4 138 5.71e-12 65.1
MS.gene28602.t1 MTR_4g123553 25.342 146 105 2 8 153 12 153 5.30e-11 62.0
MS.gene28602.t1 MTR_7g067120 28.477 151 95 5 9 153 5 148 6.22e-11 62.0
MS.gene28602.t1 MTR_8g007565 24.473 237 151 8 15 234 11 236 9.33e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28602.t1 AT2G36770 36.000 225 125 6 12 221 13 233 7.75e-33 124
MS.gene28602.t1 AT2G36790 33.624 229 131 8 9 221 9 232 1.37e-32 124
MS.gene28602.t1 AT2G36780 33.184 223 134 6 12 221 13 233 1.72e-31 120
MS.gene28602.t1 AT4G34131 31.169 231 138 7 8 221 7 233 3.22e-31 120
MS.gene28602.t1 AT2G36750 32.114 246 146 8 5 236 4 242 3.13e-30 117
MS.gene28602.t1 AT2G36760 32.911 237 142 7 12 234 13 246 5.16e-30 116
MS.gene28602.t1 AT3G53150 33.475 236 138 9 1 221 10 241 3.59e-29 114
MS.gene28602.t1 AT2G36800 30.380 237 149 6 12 234 11 245 1.78e-27 109
MS.gene28602.t1 AT4G34135 27.826 230 147 5 8 221 8 234 6.32e-27 106
MS.gene28602.t1 AT2G15480 28.992 238 140 7 5 221 4 233 1.87e-26 107
MS.gene28602.t1 AT2G15480 28.992 238 140 7 5 221 4 233 2.08e-26 106
MS.gene28602.t1 AT4G34135 27.826 230 147 5 8 221 8 234 2.60e-26 106
MS.gene28602.t1 AT3G53160 30.544 239 151 5 9 235 6 241 1.30e-25 104
MS.gene28602.t1 AT4G34138 29.004 231 138 7 11 221 9 233 3.45e-25 103
MS.gene28602.t1 AT2G15490 29.825 228 133 6 14 221 10 230 3.63e-25 103
MS.gene28602.t1 AT2G15490 29.825 228 133 6 14 221 10 230 3.66e-25 103
MS.gene28602.t1 AT2G15490 30.049 203 112 6 14 201 10 197 1.81e-22 93.2
MS.gene28602.t1 AT5G14860 25.322 233 144 5 14 221 11 238 2.14e-13 69.3
MS.gene28602.t1 AT1G10400 26.778 239 132 10 11 221 5 228 1.59e-12 66.6
MS.gene28602.t1 AT2G16890 25.105 239 155 8 15 236 13 244 2.57e-12 65.5
MS.gene28602.t1 AT2G16890 25.105 239 155 8 15 236 13 244 2.57e-12 65.5
MS.gene28602.t1 AT2G16890 25.210 238 154 8 16 236 14 244 6.64e-12 64.7
MS.gene28602.t1 AT5G03490 30.189 159 104 4 5 160 13 167 8.53e-12 64.7
MS.gene28602.t1 AT2G16890 25.000 240 156 8 14 236 12 244 1.13e-11 64.3

Find 74 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATACGATGAGGAAAATT+TGG 0.239558 8.1:-27720713 None:intergenic
GTCATAGATTCAATGCCTTT+TGG 0.250182 8.1:-27720413 None:intergenic
AACAACTTTGCTGAACTTGA+TGG 0.316375 8.1:+27720821 MS.gene28602:CDS
TTCATTCCATTTCTAGCATC+TGG 0.324858 8.1:+27720218 MS.gene28602:CDS
GGTTTGGGATCTGAAACTTA+TGG 0.337384 8.1:-27720577 None:intergenic
AGGAATTTGCTAAGTACCTT+TGG 0.353204 8.1:-27720752 None:intergenic
ATCCGTTGAATGTGAGGTTT+GGG 0.361331 8.1:-27720592 None:intergenic
TGGACCCATTGAGGATTTCA+TGG 0.385605 8.1:+27720493 MS.gene28602:CDS
GAAGTAAATTGTTTCTTATG+AGG 0.385832 8.1:-27720646 None:intergenic
GTTTGGGATCTGAAACTTAT+GGG 0.393118 8.1:-27720576 None:intergenic
AGAGAGATTTGGTAAGGGAT+TGG 0.404657 8.1:-27720325 None:intergenic
GGATTGGGCGTTGGAGGGAG+TGG 0.423540 8.1:-27720309 None:intergenic
GGTAAGGGATTGGGCGTTGG+AGG 0.437108 8.1:-27720315 None:intergenic
TTTGGTAAGGGATTGGGCGT+TGG 0.440481 8.1:-27720318 None:intergenic
GAGAGATTTGGTAAGGGATT+GGG 0.441100 8.1:-27720324 None:intergenic
AAGTAAATTGTTTCTTATGA+GGG 0.441464 8.1:-27720645 None:intergenic
ATATGTCCAGATGCTAGAAA+TGG 0.452356 8.1:-27720224 None:intergenic
AATCCGTTGAATGTGAGGTT+TGG 0.455226 8.1:-27720593 None:intergenic
TTCTCCATGAAATCCTCAAT+GGG 0.465488 8.1:-27720497 None:intergenic
TTTCTCCATGAAATCCTCAA+TGG 0.466084 8.1:-27720498 None:intergenic
AGCGGCGGATGAGAGAGATT+TGG 0.482822 8.1:-27720336 None:intergenic
AATTTGCTAAGTACCTTTGG+AGG 0.484015 8.1:-27720749 None:intergenic
AGGAAAATTTGGAACAAGAA+AGG 0.486118 8.1:-27720702 None:intergenic
GAAAGTCAACAGTGTGGAGG+TGG 0.499899 8.1:-27720370 None:intergenic
CCACCGACTCCATCACCTCT+TGG 0.501615 8.1:+27720441 MS.gene28602:CDS
CGGATGAGAGAGATTTGGTA+AGG 0.502074 8.1:-27720331 None:intergenic
GTAAGGGATTGGGCGTTGGA+GGG 0.504963 8.1:-27720314 None:intergenic
AGAGGTGATGGAGTCGGTGG+TGG 0.509899 8.1:-27720438 None:intergenic
AGTCAACAGTGTGGAGGTGG+AGG 0.511867 8.1:-27720367 None:intergenic
ATACCCATGGGCAAATGACT+TGG 0.513883 8.1:+27720553 MS.gene28602:CDS
GTCATTTGCCCATGGGTATG+TGG 0.520069 8.1:-27720549 None:intergenic
TGCCCATGGGTATGTGGAGT+CGG 0.539263 8.1:-27720543 None:intergenic
CGTGGTGCAATGCTCCTCCA+TGG 0.540948 8.1:+27720473 MS.gene28602:CDS
GAACAAGTTGACCTCCCAAA+AGG 0.544221 8.1:+27720398 MS.gene28602:CDS
TGGGCCAAGTCATTTGCCCA+TGG 0.545631 8.1:-27720557 None:intergenic
ATCCCAAACCTCACATTCAA+CGG 0.550263 8.1:+27720590 MS.gene28602:CDS
GTGATAATCCGTTGAATGTG+AGG 0.552125 8.1:-27720598 None:intergenic
GTGGATCTTCCAAGAGGTGA+TGG 0.553266 8.1:-27720450 None:intergenic
CGAGAAAACCACGGGTCACA+AGG 0.555062 8.1:+27720865 MS.gene28602:CDS
GCAACTATGTTTGCATCCCA+TGG 0.559370 8.1:+27720266 MS.gene28602:CDS
GGGCCAAGTCATTTGCCCAT+GGG 0.559413 8.1:-27720556 None:intergenic
TGAAATCCTCAATGGGTCCA+TGG 0.564035 8.1:-27720490 None:intergenic
GACTGTGACTTGATGTCCAT+GGG 0.566462 8.1:-27720282 None:intergenic
AGTGTGGAGGTGGAGGAAGA+AGG 0.574940 8.1:-27720360 None:intergenic
GCTCCTCCATGGACCCATTG+AGG 0.577302 8.1:+27720484 MS.gene28602:CDS
GGGAGGTCAACTTGTTCGGA+GGG 0.579466 8.1:-27720392 None:intergenic
GAGGGATTCCACGAGGGAGA+CGG 0.582027 8.1:-27720627 None:intergenic
TGGGAGGTCAACTTGTTCGG+AGG 0.584972 8.1:-27720393 None:intergenic
TCTCCGACTCCACATACCCA+TGG 0.591948 8.1:+27720540 MS.gene28602:CDS
TGACTGTGACTTGATGTCCA+TGG 0.595694 8.1:-27720283 None:intergenic
ATGCCAAACCTTGTGACCCG+TGG 0.597172 8.1:-27720873 None:intergenic
GAGTCGGAGATGATACAATC+CGG 0.599272 8.1:-27720527 None:intergenic
GAGGTGGAGGAAGAAGGAAG+CGG 0.602669 8.1:-27720354 None:intergenic
TTTCATGGAGAAAGATCCAC+CGG 0.605532 8.1:+27720508 MS.gene28602:CDS
CTCCGACTCCACATACCCAT+GGG 0.612539 8.1:+27720541 MS.gene28602:CDS
GGATGAGAGAGATTTGGTAA+GGG 0.615398 8.1:-27720330 None:intergenic
AAACATTGATCAGCAATGGA+AGG 0.616527 8.1:+27720164 None:intergenic
CTTCCAAGAGGTGATGGAGT+CGG 0.622827 8.1:-27720444 None:intergenic
GGAATGAAGTGAAGTTTCAG+TGG 0.626414 8.1:-27720203 None:intergenic
CCAAGAGGTGATGGAGTCGG+TGG 0.632542 8.1:-27720441 None:intergenic
TCGGACAAGGTGATACGATG+AGG 0.640390 8.1:-27720722 None:intergenic
CAACACTACGAGAAAACCAC+GGG 0.646166 8.1:+27720857 MS.gene28602:CDS
GTGGAGGAAGAAGGAAGCGG+CGG 0.651820 8.1:-27720351 None:intergenic
TCTTATGAGGGATTCCACGA+GGG 0.666584 8.1:-27720633 None:intergenic
AGGGAAAGTCAACAGTGTGG+AGG 0.673336 8.1:-27720373 None:intergenic
TCGGAGATGATACAATCCGG+TGG 0.682187 8.1:-27720524 None:intergenic
TTCTTATGAGGGATTCCACG+AGG 0.682293 8.1:-27720634 None:intergenic
CATGGAGGAGCATTGCACCA+CGG 0.689620 8.1:-27720472 None:intergenic
CCAACACTACGAGAAAACCA+CGG 0.719836 8.1:+27720856 MS.gene28602:CDS
CGGAGGGAAAGTCAACAGTG+TGG 0.729197 8.1:-27720376 None:intergenic
GGAGGAGCATTGCACCACGG+TGG 0.729530 8.1:-27720469 None:intergenic
AATCCTCAATGGGTCCATGG+AGG 0.729822 8.1:-27720487 None:intergenic
ACCACGGTGGATCTTCCAAG+AGG 0.735300 8.1:-27720456 None:intergenic
ACCTCTTGGAAGATCCACCG+TGG 0.758381 8.1:+27720455 MS.gene28602:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTAAATTGTTTCTTATGA+GGG - chr8.1:27720648-27720667 None:intergenic 20.0%
!! GAAGTAAATTGTTTCTTATG+AGG - chr8.1:27720649-27720668 None:intergenic 25.0%
ATAGTTGCTATGTCAAAAAG+AGG - chr8.1:27720254-27720273 None:intergenic 30.0%
TAGTTGCTATGTCAAAAAGA+GGG - chr8.1:27720253-27720272 None:intergenic 30.0%
! AGGAAAATTTGGAACAAGAA+AGG - chr8.1:27720705-27720724 None:intergenic 30.0%
! TCATAGATTCAATGCCTTTT+GGG - chr8.1:27720415-27720434 None:intergenic 30.0%
AACAACTTTGCTGAACTTGA+TGG + chr8.1:27720821-27720840 MS.gene28602:CDS 35.0%
ATATGTCCAGATGCTAGAAA+TGG - chr8.1:27720227-27720246 None:intergenic 35.0%
GTGATACGATGAGGAAAATT+TGG - chr8.1:27720716-27720735 None:intergenic 35.0%
TTCTCCATGAAATCCTCAAT+GGG - chr8.1:27720500-27720519 None:intergenic 35.0%
TTTCTCCATGAAATCCTCAA+TGG - chr8.1:27720501-27720520 None:intergenic 35.0%
! GTCATAGATTCAATGCCTTT+TGG - chr8.1:27720416-27720435 None:intergenic 35.0%
! GTTTGGGATCTGAAACTTAT+GGG - chr8.1:27720579-27720598 None:intergenic 35.0%
!! AAGTACCTTTGGAGGTTTTT+CGG - chr8.1:27720744-27720763 None:intergenic 35.0%
!! AATTTGCTAAGTACCTTTGG+AGG - chr8.1:27720752-27720771 None:intergenic 35.0%
!! AGGAATTTGCTAAGTACCTT+TGG - chr8.1:27720755-27720774 None:intergenic 35.0%
!! CTGTCTCAAGCATCATTTTT+AGG - chr8.1:27720775-27720794 None:intergenic 35.0%
!! TTCATTCCATTTCTAGCATC+TGG + chr8.1:27720218-27720237 MS.gene28602:CDS 35.0%
AATCCGTTGAATGTGAGGTT+TGG - chr8.1:27720596-27720615 None:intergenic 40.0%
ATCCCAAACCTCACATTCAA+CGG + chr8.1:27720590-27720609 MS.gene28602:CDS 40.0%
ATCCGTTGAATGTGAGGTTT+GGG - chr8.1:27720595-27720614 None:intergenic 40.0%
GGAATGAAGTGAAGTTTCAG+TGG - chr8.1:27720206-27720225 None:intergenic 40.0%
GTGATAATCCGTTGAATGTG+AGG - chr8.1:27720601-27720620 None:intergenic 40.0%
TTTCATGGAGAAAGATCCAC+CGG + chr8.1:27720508-27720527 MS.gene28602:CDS 40.0%
! AGAGAGATTTGGTAAGGGAT+TGG - chr8.1:27720328-27720347 None:intergenic 40.0%
! GAGAGATTTGGTAAGGGATT+GGG - chr8.1:27720327-27720346 None:intergenic 40.0%
! GGATGAGAGAGATTTGGTAA+GGG - chr8.1:27720333-27720352 None:intergenic 40.0%
! GGTTTGGGATCTGAAACTTA+TGG - chr8.1:27720580-27720599 None:intergenic 40.0%
! TAGATTCAATGCCTTTTGGG+AGG - chr8.1:27720412-27720431 None:intergenic 40.0%
!! TTTTGGGAGGTCAACTTGTT+CGG - chr8.1:27720399-27720418 None:intergenic 40.0%
ATACCCATGGGCAAATGACT+TGG + chr8.1:27720553-27720572 MS.gene28602:CDS 45.0%
CAACACTACGAGAAAACCAC+GGG + chr8.1:27720857-27720876 MS.gene28602:CDS 45.0%
CCAACACTACGAGAAAACCA+CGG + chr8.1:27720856-27720875 MS.gene28602:CDS 45.0%
CTTGTCCGAAAAACCTCCAA+AGG + chr8.1:27720736-27720755 MS.gene28602:CDS 45.0%
GACTGTGACTTGATGTCCAT+GGG - chr8.1:27720285-27720304 None:intergenic 45.0%
GAGTCGGAGATGATACAATC+CGG - chr8.1:27720530-27720549 None:intergenic 45.0%
GCAACTATGTTTGCATCCCA+TGG + chr8.1:27720266-27720285 MS.gene28602:CDS 45.0%
TCTTATGAGGGATTCCACGA+GGG - chr8.1:27720636-27720655 None:intergenic 45.0%
TGAAATCCTCAATGGGTCCA+TGG - chr8.1:27720493-27720512 None:intergenic 45.0%
TGACTGTGACTTGATGTCCA+TGG - chr8.1:27720286-27720305 None:intergenic 45.0%
TGGACCCATTGAGGATTTCA+TGG + chr8.1:27720493-27720512 MS.gene28602:CDS 45.0%
TTCTTATGAGGGATTCCACG+AGG - chr8.1:27720637-27720656 None:intergenic 45.0%
! CGGATGAGAGAGATTTGGTA+AGG - chr8.1:27720334-27720353 None:intergenic 45.0%
! GAACAAGTTGACCTCCCAAA+AGG + chr8.1:27720398-27720417 MS.gene28602:CDS 45.0%
!! CTTTGGAGGTTTTTCGGACA+AGG - chr8.1:27720738-27720757 None:intergenic 45.0%
AATCCTCAATGGGTCCATGG+AGG - chr8.1:27720490-27720509 None:intergenic 50.0%
AGGGAAAGTCAACAGTGTGG+AGG - chr8.1:27720376-27720395 None:intergenic 50.0%
GAAAGTCAACAGTGTGGAGG+TGG - chr8.1:27720373-27720392 None:intergenic 50.0%
GTCATTTGCCCATGGGTATG+TGG - chr8.1:27720552-27720571 None:intergenic 50.0%
GTGGATCTTCCAAGAGGTGA+TGG - chr8.1:27720453-27720472 None:intergenic 50.0%
TCGGACAAGGTGATACGATG+AGG - chr8.1:27720725-27720744 None:intergenic 50.0%
TCGGAGATGATACAATCCGG+TGG - chr8.1:27720527-27720546 None:intergenic 50.0%
TTTGGTAAGGGATTGGGCGT+TGG - chr8.1:27720321-27720340 None:intergenic 50.0%
! ACTTTTTACCGTCTCCCTCG+TGG + chr8.1:27720619-27720638 MS.gene28602:CDS 50.0%
! CCGTGGTTTTCTCGTAGTGT+TGG - chr8.1:27720859-27720878 None:intergenic 50.0%
!! CTTCCAAGAGGTGATGGAGT+CGG - chr8.1:27720447-27720466 None:intergenic 50.0%
ACCACGGTGGATCTTCCAAG+AGG - chr8.1:27720459-27720478 None:intergenic 55.0%
ACCTCTTGGAAGATCCACCG+TGG + chr8.1:27720455-27720474 MS.gene28602:CDS 55.0%
AGCGGCGGATGAGAGAGATT+TGG - chr8.1:27720339-27720358 None:intergenic 55.0%
AGTCAACAGTGTGGAGGTGG+AGG - chr8.1:27720370-27720389 None:intergenic 55.0%
AGTGTGGAGGTGGAGGAAGA+AGG - chr8.1:27720363-27720382 None:intergenic 55.0%
CGGAGGGAAAGTCAACAGTG+TGG - chr8.1:27720379-27720398 None:intergenic 55.0%
CTCCGACTCCACATACCCAT+GGG + chr8.1:27720541-27720560 MS.gene28602:CDS 55.0%
GAGGTGGAGGAAGAAGGAAG+CGG - chr8.1:27720357-27720376 None:intergenic 55.0%
GGGCCAAGTCATTTGCCCAT+GGG - chr8.1:27720559-27720578 None:intergenic 55.0%
TCTCCGACTCCACATACCCA+TGG + chr8.1:27720540-27720559 MS.gene28602:CDS 55.0%
TGCCCATGGGTATGTGGAGT+CGG - chr8.1:27720546-27720565 None:intergenic 55.0%
TGGGCCAAGTCATTTGCCCA+TGG - chr8.1:27720560-27720579 None:intergenic 55.0%
! GGGAGGTCAACTTGTTCGGA+GGG - chr8.1:27720395-27720414 None:intergenic 55.0%
! TGGGAGGTCAACTTGTTCGG+AGG - chr8.1:27720396-27720415 None:intergenic 55.0%
!! CATGGAGGAGCATTGCACCA+CGG - chr8.1:27720475-27720494 None:intergenic 55.0%
!! GTAAGGGATTGGGCGTTGGA+GGG - chr8.1:27720317-27720336 None:intergenic 55.0%
CGTGGTGCAATGCTCCTCCA+TGG + chr8.1:27720473-27720492 MS.gene28602:CDS 60.0%
GAGGGATTCCACGAGGGAGA+CGG - chr8.1:27720630-27720649 None:intergenic 60.0%
GCTCCTCCATGGACCCATTG+AGG + chr8.1:27720484-27720503 MS.gene28602:CDS 60.0%
GTGGAGGAAGAAGGAAGCGG+CGG - chr8.1:27720354-27720373 None:intergenic 60.0%
!! AGAGGTGATGGAGTCGGTGG+TGG - chr8.1:27720441-27720460 None:intergenic 60.0%
!! CCAAGAGGTGATGGAGTCGG+TGG - chr8.1:27720444-27720463 None:intergenic 60.0%
!! CCACCGACTCCATCACCTCT+TGG + chr8.1:27720441-27720460 MS.gene28602:CDS 60.0%
!! GGTAAGGGATTGGGCGTTGG+AGG - chr8.1:27720318-27720337 None:intergenic 60.0%
!! GGAGGAGCATTGCACCACGG+TGG - chr8.1:27720472-27720491 None:intergenic 65.0%
!! GGATTGGGCGTTGGAGGGAG+TGG - chr8.1:27720312-27720331 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 27720179 27720886 27720179 ID=MS.gene28602
chr8.1 mRNA 27720179 27720886 27720179 ID=MS.gene28602.t1;Parent=MS.gene28602
chr8.1 exon 27720179 27720886 27720179 ID=MS.gene28602.t1.exon1;Parent=MS.gene28602.t1
chr8.1 CDS 27720179 27720886 27720179 ID=cds.MS.gene28602.t1;Parent=MS.gene28602.t1
Gene Sequence

>MS.gene28602

ATGGAAGGCGTTGAAGTTCAACGACCACTGAAACTTCACTTCATTCCATTTCTAGCATCTGGACATATGATCCCTCTTTTTGACATAGCAACTATGTTTGCATCCCATGGACATCAAGTCACAGTCATCACCACTCCCTCCAACGCCCAATCCCTTACCAAATCTCTCTCATCCGCCGCTTCCTTCTTCCTCCACCTCCACACTGTTGACTTTCCCTCCGAACAAGTTGACCTCCCAAAAGGCATTGAATCTATGACTTCCACCACCGACTCCATCACCTCTTGGAAGATCCACCGTGGTGCAATGCTCCTCCATGGACCCATTGAGGATTTCATGGAGAAAGATCCACCGGATTGTATCATCTCCGACTCCACATACCCATGGGCAAATGACTTGGCCCATAAGTTTCAGATCCCAAACCTCACATTCAACGGATTATCACTTTTTACCGTCTCCCTCGTGGAATCCCTCATAAGAAACAATTTACTTCATTCTGATACGAATTCTGATTCAGATTCAAGTTCCTTTCTTGTTCCAAATTTTCCTCATCGTATCACCTTGTCCGAAAAACCTCCAAAGGTACTTAGCAAATTCCTAAAAATGATGCTTGAGACAGTACTCAAAAGTAAAGCACTCATCATCAACAACTTTGCTGAACTTGATGGAGAAGAGTGCATCCAACACTACGAGAAAACCACGGGTCACAAG
Protein sequence

>MS.gene28602.t1

MEGVEVQRPLKLHFIPFLASGHMIPLFDIATMFASHGHQVTVITTPSNAQSLTKSLSSAASFFLHLHTVDFPSEQVDLPKGIESMTSTTDSITSWKIHRGAMLLHGPIEDFMEKDPPDCIISDSTYPWANDLAHKFQIPNLTFNGLSLFTVSLVESLIRNNLLHSDTNSDSDSSSFLVPNFPHRITLSEKPPKVLSKFLKMMLETVLKSKALIINNFAELDGEECIQHYEKTTGHK