Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29250.t1 | XP_003589717.2 | 95 | 457 | 22 | 1 | 1 | 456 | 1 | 457 | 9.40E-244 | 852.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29250.t1 | Q9FMX6 | 54.0 | 420 | 172 | 5 | 49 | 456 | 31 | 441 | 9.3e-115 | 415.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29250.t1 | A0A396JQ54 | 95.0 | 457 | 22 | 1 | 1 | 456 | 1 | 457 | 6.8e-244 | 852.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene29250 | -0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene29250 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene29250 | 0.862744 | 4.08E-64 | -1.69E-46 |
| MS.gene051208 | MS.gene29250 | 0.84515 | 4.86E-59 | -1.69E-46 |
| MS.gene051240 | MS.gene29250 | 0.82694 | 2.06E-54 | -1.69E-46 |
| MS.gene051242 | MS.gene29250 | 0.863033 | 3.32E-64 | -1.69E-46 |
| MS.gene051244 | MS.gene29250 | 0.837338 | 5.51E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene29250 | 0.811645 | 6.31E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene29250 | 0.801822 | 7.51E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene29250 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene29250 | 0.811259 | 7.65E-51 | -1.69E-46 |
| MS.gene052590 | MS.gene29250 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene29250 | 0.907109 | 7.23E-81 | -1.69E-46 |
| MS.gene053907 | MS.gene29250 | 0.810083 | 1.37E-50 | -1.69E-46 |
| MS.gene053971 | MS.gene29250 | 0.831776 | 1.38E-55 | -1.69E-46 |
| MS.gene055370 | MS.gene29250 | 0.848702 | 5.18E-60 | -1.69E-46 |
| MS.gene055501 | MS.gene29250 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene29250 | 0.847153 | 1.38E-59 | -1.69E-46 |
| MS.gene05625 | MS.gene29250 | 0.826609 | 2.47E-54 | -1.69E-46 |
| MS.gene056305 | MS.gene29250 | 0.88637 | 3.63E-72 | -1.69E-46 |
| MS.gene056351 | MS.gene29250 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene056442 | MS.gene29250 | 0.8303 | 3.17E-55 | -1.69E-46 |
| MS.gene056451 | MS.gene29250 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene056633 | MS.gene29250 | 0.914266 | 2.35E-84 | -1.69E-46 |
| MS.gene056664 | MS.gene29250 | 0.866257 | 3.25E-65 | -1.69E-46 |
| MS.gene058142 | MS.gene29250 | 0.809961 | 1.46E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene29250 | 0.81832 | 2.08E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene29250 | 0.845511 | 3.88E-59 | -1.69E-46 |
| MS.gene058743 | MS.gene29250 | 0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene29250 | 0.928048 | 5.01E-92 | -1.69E-46 |
| MS.gene059247 | MS.gene29250 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene059512 | MS.gene29250 | 0.849449 | 3.21E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene29250 | 0.804562 | 2.04E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene29250 | 0.839351 | 1.67E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29250.t1 | MTR_1g038430 | 95.216 | 439 | 20 | 1 | 19 | 456 | 1 | 439 | 0.0 | 857 |
| MS.gene29250.t1 | MTR_2g083920 | 33.659 | 205 | 125 | 4 | 68 | 270 | 70 | 265 | 1.73e-29 | 118 |
| MS.gene29250.t1 | MTR_2g083920 | 33.014 | 209 | 129 | 4 | 68 | 274 | 70 | 269 | 8.40e-29 | 114 |
| MS.gene29250.t1 | MTR_4g080350 | 33.621 | 232 | 128 | 6 | 37 | 253 | 29 | 249 | 1.24e-28 | 115 |
| MS.gene29250.t1 | MTR_2g083920 | 33.333 | 180 | 109 | 4 | 93 | 270 | 2 | 172 | 4.08e-25 | 103 |
| MS.gene29250.t1 | MTR_1g038470 | 51.807 | 83 | 32 | 2 | 139 | 218 | 2 | 79 | 2.10e-17 | 80.9 |
| MS.gene29250.t1 | MTR_1g038510 | 83.784 | 37 | 6 | 0 | 179 | 215 | 102 | 138 | 3.38e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29250.t1 | AT5G23240 | 54.087 | 416 | 168 | 5 | 53 | 456 | 37 | 441 | 9.58e-152 | 439 |
| MS.gene29250.t1 | AT2G42750 | 31.944 | 216 | 136 | 4 | 57 | 270 | 65 | 271 | 1.84e-28 | 115 |
Find 78 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTGCCTCATCAATTT+TGG | 0.081202 | 1.1:+23055997 | None:intergenic |
| TGTAACAGTAGACATGTTTA+TGG | 0.185098 | 1.1:+23057495 | None:intergenic |
| CTGACATTCTTGATTCTCTT+TGG | 0.194662 | 1.1:+23054805 | None:intergenic |
| TTTGCTATAGAATCAGTTTA+TGG | 0.202414 | 1.1:-23056058 | MS.gene29250:CDS |
| TTTGACTTGTATGATCTTCT+AGG | 0.212676 | 1.1:-23057343 | MS.gene29250:CDS |
| CAATTTCTAATTGGTTATAT+TGG | 0.226095 | 1.1:-23054764 | MS.gene29250:CDS |
| CCTGATATTGCTGGTCCTTC+TGG | 0.231877 | 1.1:-23057253 | MS.gene29250:CDS |
| TCTCTTAGCTTACTAAGATT+TGG | 0.253936 | 1.1:+23054678 | None:intergenic |
| CCATTCATCCTGAGGAATAT+TGG | 0.276497 | 1.1:-23054593 | MS.gene29250:CDS |
| TTGGTGCCAGTTGCACTATT+TGG | 0.284345 | 1.1:+23054738 | None:intergenic |
| ACAGGCAATCCCCATCTAAT+TGG | 0.286221 | 1.1:+23054441 | None:intergenic |
| CAATTAGATCAATTTCTAAT+TGG | 0.293169 | 1.1:-23054773 | MS.gene29250:CDS |
| ATGGTTTGAGTTTGAGAATA+AGG | 0.336019 | 1.1:+23057514 | None:intergenic |
| ATGAAAATAGTCCAATTAGA+TGG | 0.341134 | 1.1:-23054452 | MS.gene29250:CDS |
| TTGGGGAGGTTCTCTAGCTT+TGG | 0.348620 | 1.1:-23054343 | MS.gene29250:CDS |
| CCTGTGGTTACTTCATTGTT+TGG | 0.358405 | 1.1:-23054423 | MS.gene29250:CDS |
| TGGAAATTGTTAACAGCTCT+TGG | 0.372667 | 1.1:-23054323 | MS.gene29250:CDS |
| CCAGAAGGACCAGCAATATC+AGG | 0.385817 | 1.1:+23057253 | None:intergenic |
| TGGTCCTTCTGGTCATGATA+TGG | 0.387346 | 1.1:-23057242 | MS.gene29250:CDS |
| AGTTGAGTTGAAAGAGCATT+GGG | 0.412413 | 1.1:-23054361 | MS.gene29250:CDS |
| CGATGTCATCCTGATATTGC+TGG | 0.415641 | 1.1:-23057262 | MS.gene29250:CDS |
| TTCACTCACCTGAGAATACT+TGG | 0.415649 | 1.1:+23055542 | None:intergenic |
| GGTTACTTCATTGTTTGGTA+TGG | 0.419001 | 1.1:-23054418 | MS.gene29250:CDS |
| GAAGACCATTGTATTCAGTT+TGG | 0.420412 | 1.1:-23056171 | MS.gene29250:CDS |
| ACATTCTTGATTCTCTTTGG+AGG | 0.428803 | 1.1:+23054808 | None:intergenic |
| ACAGAATTCAAAGGCTTCAC+TGG | 0.429274 | 1.1:-23056193 | MS.gene29250:CDS |
| GAAGGAAGAACAACAGTTGA+TGG | 0.432900 | 1.1:+23054567 | None:intergenic |
| CCAATATTCCTCAGGATGAA+TGG | 0.445444 | 1.1:+23054593 | None:intergenic |
| TGGCAACCAAATAGTGCAAC+TGG | 0.446692 | 1.1:-23054744 | MS.gene29250:CDS |
| GCAAATGTAGGCTTCTCAAT+TGG | 0.454450 | 1.1:+23054522 | None:intergenic |
| TCATAAGCAAAACGAGCAAA+TGG | 0.458278 | 1.1:+23057181 | None:intergenic |
| TGAAAATAGTCCAATTAGAT+GGG | 0.463058 | 1.1:-23054451 | MS.gene29250:CDS |
| CTCAGGATGAATGGAATTTG+AGG | 0.466278 | 1.1:+23054602 | None:intergenic |
| GAGAAGCCTACATTTGCTAA+AGG | 0.480645 | 1.1:-23054516 | MS.gene29250:CDS |
| AGCTTACTAAGATTTGGATC+AGG | 0.486859 | 1.1:+23054684 | None:intergenic |
| AGCAAATGGATCGGAAAGAA+TGG | 0.495584 | 1.1:+23057195 | None:intergenic |
| TGTTTGGTATGGCTGCAGTT+AGG | 0.496837 | 1.1:-23054407 | MS.gene29250:CDS |
| GAACTCTAAAGCAGCAAGGT+TGG | 0.499700 | 1.1:+23055695 | None:intergenic |
| CAGTTGAGTTGAAAGAGCAT+TGG | 0.510120 | 1.1:-23054362 | MS.gene29250:CDS |
| TCAGGATGAATGGAATTTGA+GGG | 0.519060 | 1.1:+23054603 | None:intergenic |
| CTCTAACATATTTGTAGATG+TGG | 0.521122 | 1.1:-23055607 | MS.gene29250:CDS |
| CTCTTGGTTGCAATATATGT+TGG | 0.521916 | 1.1:-23054307 | MS.gene29250:CDS |
| TTCTTTCCTTTAGCAAATGT+AGG | 0.522367 | 1.1:+23054510 | None:intergenic |
| GTTGATGAAGTAAAATGTGT+TGG | 0.527062 | 1.1:-23056115 | MS.gene29250:CDS |
| AGCAAGGGTTGTTTCTCAGT+GGG | 0.533941 | 1.1:-23056032 | MS.gene29250:CDS |
| AAAAGCTTCCAAGTATTCTC+AGG | 0.534346 | 1.1:-23055550 | MS.gene29250:intron |
| GATGGAGTCCAATATTCCTC+AGG | 0.534720 | 1.1:+23054585 | None:intergenic |
| GTAGGTGCAAGTCATACAGC+AGG | 0.546276 | 1.1:-23055639 | MS.gene29250:CDS |
| ACTTACGAAATGCAGTTGAC+AGG | 0.558378 | 1.1:+23055968 | None:intergenic |
| GTAGTAGTACTAGTTGAAGA+AGG | 0.558873 | 1.1:+23054549 | None:intergenic |
| ATCAGTTTATGGAAGAGCAA+GGG | 0.573227 | 1.1:-23056047 | MS.gene29250:CDS |
| AATCAGTTTATGGAAGAGCA+AGG | 0.576566 | 1.1:-23056048 | MS.gene29250:CDS |
| ATATGTTGGTAGCAGCTACA+TGG | 0.578806 | 1.1:-23054293 | None:intergenic |
| CTCAAATTCCATTCATCCTG+AGG | 0.582163 | 1.1:-23054601 | MS.gene29250:CDS |
| AATTAGATGGGGATTGCCTG+TGG | 0.589161 | 1.1:-23054439 | MS.gene29250:CDS |
| CCATTGTATTCAGTTTGGTG+TGG | 0.590749 | 1.1:-23056166 | MS.gene29250:CDS |
| ACATATTTGTAGATGTGGAG+AGG | 0.591397 | 1.1:-23055602 | MS.gene29250:CDS |
| CCACGTGGCAATGTAAGAGT+AGG | 0.594070 | 1.1:-23055657 | MS.gene29250:CDS |
| GAATAAGGTGTGGCAGCAAG+AGG | 0.595766 | 1.1:+23057529 | None:intergenic |
| GCAGTTAGGTTACATGAAGT+AGG | 0.596129 | 1.1:-23054393 | MS.gene29250:CDS |
| GCAAAGATCACAGAATTCAA+AGG | 0.599426 | 1.1:-23056202 | MS.gene29250:CDS |
| TTCTGAACCCAAAATTGATG+AGG | 0.621483 | 1.1:-23056005 | MS.gene29250:CDS |
| AGCAAAACGAGCAAATGGAT+CGG | 0.622525 | 1.1:+23057186 | None:intergenic |
| CAGGATGAATGGAATTTGAG+GGG | 0.623970 | 1.1:+23054604 | None:intergenic |
| AGGATGAATGGAATTTGAGG+GGG | 0.632617 | 1.1:+23054605 | None:intergenic |
| GAGCAAGGGTTGTTTCTCAG+TGG | 0.633189 | 1.1:-23056033 | MS.gene29250:CDS |
| CCAAACAATGAAGTAACCAC+AGG | 0.638811 | 1.1:+23054423 | None:intergenic |
| GAGTTGAAAGAGCATTGGGG+AGG | 0.639356 | 1.1:-23054357 | MS.gene29250:CDS |
| GAAAATAGTCCAATTAGATG+GGG | 0.640775 | 1.1:-23054450 | MS.gene29250:CDS |
| ATAGCCATATCATGACCAGA+AGG | 0.649543 | 1.1:+23057238 | None:intergenic |
| TCAAGAACTCTAAAGCAGCA+AGG | 0.659080 | 1.1:+23055691 | None:intergenic |
| CCACACCAAACTGAATACAA+TGG | 0.683154 | 1.1:+23056166 | None:intergenic |
| ATACAAGTCAAAATCCAACA+TGG | 0.696805 | 1.1:+23057354 | None:intergenic |
| GTTGAGTTGAAAGAGCATTG+GGG | 0.697316 | 1.1:-23054360 | MS.gene29250:CDS |
| TGATCAGTCACAGATCAAGA+CGG | 0.698326 | 1.1:-23057305 | MS.gene29250:CDS |
| TTGATGTCGAAGCAGCCACG+TGG | 0.734249 | 1.1:-23055672 | MS.gene29250:CDS |
| CCTACTCTTACATTGCCACG+TGG | 0.735405 | 1.1:+23055657 | None:intergenic |
| TTGAGTTTGAGAATAAGGTG+TGG | 0.756744 | 1.1:+23057519 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTCAATGAATATACA+AGG | + | chr1.1:23056050-23056069 | None:intergenic | 15.0% |
| !! | GTCTATAAAACATTTATATT+AGG | + | chr1.1:23054832-23054851 | None:intergenic | 15.0% |
| !! | TTACGATATAAATCATAATA+TGG | + | chr1.1:23055036-23055055 | None:intergenic | 15.0% |
| !!! | AATACAAACTTTAAAGATTA+AGG | + | chr1.1:23056954-23056973 | None:intergenic | 15.0% |
| !!! | ATACAAACTTTAAAGATTAA+GGG | + | chr1.1:23056953-23056972 | None:intergenic | 15.0% |
| !!! | ATTGAATTCTTATTTGTTTT+TGG | - | chr1.1:23055569-23055588 | MS.gene29250:CDS | 15.0% |
| !! | ACAAATAAGAATTCAATTAG+AGG | + | chr1.1:23055566-23055585 | None:intergenic | 20.0% |
| !! | CAATTAGATCAATTTCTAAT+TGG | - | chr1.1:23057062-23057081 | MS.gene29250:intron | 20.0% |
| !! | CAATTTCTAATTGGTTATAT+TGG | - | chr1.1:23057071-23057090 | MS.gene29250:intron | 20.0% |
| !! | GATAATTTATGACTACTATT+TGG | + | chr1.1:23056804-23056823 | None:intergenic | 20.0% |
| !! | TTGTAACTAAGAATTAAGAT+TGG | - | chr1.1:23055522-23055541 | MS.gene29250:intron | 20.0% |
| !!! | AATATAATAGTTTGCACAAT+TGG | - | chr1.1:23055191-23055210 | MS.gene29250:intron | 20.0% |
| !!! | ATTCTTATTTGTTTTTGGTT+TGG | - | chr1.1:23055574-23055593 | MS.gene29250:CDS | 20.0% |
| !!! | CAATTTTTAGTTCTAAGTTA+CGG | - | chr1.1:23054787-23054806 | MS.gene29250:CDS | 20.0% |
| ! | AAATTATCCTAAAGAGCTTA+TGG | - | chr1.1:23056816-23056835 | MS.gene29250:intron | 25.0% |
| ! | AACTTAACATTGATGTTTGA+AGG | - | chr1.1:23056357-23056376 | MS.gene29250:intron | 25.0% |
| ! | ATGAAAATAGTCCAATTAGA+TGG | - | chr1.1:23057383-23057402 | MS.gene29250:CDS | 25.0% |
| ! | CATGAGATTAATATGTATGA+GGG | - | chr1.1:23055157-23055176 | MS.gene29250:intron | 25.0% |
| ! | CGATATAAATCATAATATGG+TGG | + | chr1.1:23055033-23055052 | None:intergenic | 25.0% |
| ! | TCATGAGATTAATATGTATG+AGG | - | chr1.1:23055156-23055175 | MS.gene29250:intron | 25.0% |
| ! | TGAAAATAGTCCAATTAGAT+GGG | - | chr1.1:23057384-23057403 | MS.gene29250:CDS | 25.0% |
| ! | TGGTAAAATACATGTAAACA+CGG | + | chr1.1:23055013-23055032 | None:intergenic | 25.0% |
| ! | TGTATAAACTATTCTGTACT+TGG | - | chr1.1:23055903-23055922 | MS.gene29250:intron | 25.0% |
| ! | TTGAGTTAAAAGTGAGTTTA+TGG | + | chr1.1:23056543-23056562 | None:intergenic | 25.0% |
| ! | TTGTAAAATTGTACAGTCTT+AGG | + | chr1.1:23054867-23054886 | None:intergenic | 25.0% |
| ! | TTTGTATAATGATATCTGCT+TGG | + | chr1.1:23055355-23055374 | None:intergenic | 25.0% |
| !! | CTTAACAAAAGCACAAATAT+TGG | + | chr1.1:23055084-23055103 | None:intergenic | 25.0% |
| !! | TTTGCTATAGAATCAGTTTA+TGG | - | chr1.1:23055777-23055796 | MS.gene29250:intron | 25.0% |
| !!! | GAATTTTTGGATTCACTTTT+GGG | - | chr1.1:23056313-23056332 | MS.gene29250:intron | 25.0% |
| !!! | TAGAAAAACAAGACTTGTTT+TGG | + | chr1.1:23054407-23054426 | None:intergenic | 25.0% |
| !!! | TGAATTTTTGGATTCACTTT+TGG | - | chr1.1:23056312-23056331 | MS.gene29250:intron | 25.0% |
| !!! | TTTTGGAAATTTGAAGGTTT+TGG | + | chr1.1:23054390-23054409 | None:intergenic | 25.0% |
| AAACATTTGTGAGACTGTAT+CGG | + | chr1.1:23056892-23056911 | None:intergenic | 30.0% | |
| ATACAAGTCAAAATCCAACA+TGG | + | chr1.1:23054484-23054503 | None:intergenic | 30.0% | |
| ATTTCAGCAAAAACCAATTC+TGG | + | chr1.1:23054920-23054939 | None:intergenic | 30.0% | |
| CTCTAACATATTTGTAGATG+TGG | - | chr1.1:23056228-23056247 | MS.gene29250:intron | 30.0% | |
| CTGAGAATTTCAGTCAAATA+CGG | - | chr1.1:23055980-23055999 | MS.gene29250:CDS | 30.0% | |
| CTTATTTCCATAAGCTCTTT+AGG | + | chr1.1:23056826-23056845 | None:intergenic | 30.0% | |
| GAAAATAGTCCAATTAGATG+GGG | - | chr1.1:23057385-23057404 | MS.gene29250:CDS | 30.0% | |
| GCTTATAGTATGACAAAATG+TGG | - | chr1.1:23055599-23055618 | MS.gene29250:CDS | 30.0% | |
| TAACTCAAACACTTTCACAT+TGG | - | chr1.1:23056555-23056574 | MS.gene29250:intron | 30.0% | |
| TCATATAAGCTCTATGTTAG+CGG | - | chr1.1:23056706-23056725 | MS.gene29250:intron | 30.0% | |
| TCCAGTTAGAATCAACTTTA+AGG | + | chr1.1:23056405-23056424 | None:intergenic | 30.0% | |
| TCTCTTAGCTTACTAAGATT+TGG | + | chr1.1:23057160-23057179 | None:intergenic | 30.0% | |
| TGTAACAGTAGACATGTTTA+TGG | + | chr1.1:23054343-23054362 | None:intergenic | 30.0% | |
| TTCTTTCCTTTAGCAAATGT+AGG | + | chr1.1:23057328-23057347 | None:intergenic | 30.0% | |
| TTTGTACAAAAGCTGAGTTT+AGG | - | chr1.1:23055290-23055309 | MS.gene29250:intron | 30.0% | |
| ! | AAGTTTTTCATCATCCATGT+TGG | - | chr1.1:23054467-23054486 | MS.gene29250:CDS | 30.0% |
| ! | ATGGTTTGAGTTTGAGAATA+AGG | + | chr1.1:23054324-23054343 | None:intergenic | 30.0% |
| ! | GTTGATGAAGTAAAATGTGT+TGG | - | chr1.1:23055720-23055739 | MS.gene29250:intron | 30.0% |
| ! | TGAATTGCCTCATCAATTTT+GGG | + | chr1.1:23055840-23055859 | None:intergenic | 30.0% |
| ! | TTGAATTGCCTCATCAATTT+TGG | + | chr1.1:23055841-23055860 | None:intergenic | 30.0% |
| !! | TTGGTTCTAAATTGTGATCA+CGG | + | chr1.1:23055065-23055084 | None:intergenic | 30.0% |
| !! | TTTGACTTGTATGATCTTCT+AGG | - | chr1.1:23054492-23054511 | MS.gene29250:CDS | 30.0% |
| !!! | ACTATGTAGAAGTGTTTTGT+CGG | - | chr1.1:23055417-23055436 | MS.gene29250:intron | 30.0% |
| !!! | GACTTGTTTTGGAAATTTGA+AGG | + | chr1.1:23054396-23054415 | None:intergenic | 30.0% |
| !!! | TTTTATGCTTAGGCTTTGTT+TGG | - | chr1.1:23056585-23056604 | MS.gene29250:intron | 30.0% |
| AAAACATGTTCGAACTTCGA+AGG | + | chr1.1:23056451-23056470 | None:intergenic | 35.0% | |
| AAAAGCTTCCAAGTATTCTC+AGG | - | chr1.1:23056285-23056304 | MS.gene29250:intron | 35.0% | |
| AAAGCCTAAGCATAAAAGAG+TGG | + | chr1.1:23056582-23056601 | None:intergenic | 35.0% | |
| AAGAGCTTATGGAAATAAGC+TGG | - | chr1.1:23056827-23056846 | MS.gene29250:intron | 35.0% | |
| AATCAGTTTATGGAAGAGCA+AGG | - | chr1.1:23055787-23055806 | MS.gene29250:intron | 35.0% | |
| ACATATTTGTAGATGTGGAG+AGG | - | chr1.1:23056233-23056252 | MS.gene29250:intron | 35.0% | |
| ACATTCTTGATTCTCTTTGG+AGG | + | chr1.1:23057030-23057049 | None:intergenic | 35.0% | |
| AGCTTACTAAGATTTGGATC+AGG | + | chr1.1:23057154-23057173 | None:intergenic | 35.0% | |
| ATCAGTTTATGGAAGAGCAA+GGG | - | chr1.1:23055788-23055807 | MS.gene29250:intron | 35.0% | |
| ATTGTACAGTCTTAGGACTA+TGG | + | chr1.1:23054860-23054879 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr1.1:23056761-23056780 | None:intergenic | 35.0% | |
| CTCTTGGTTGCAATATATGT+TGG | - | chr1.1:23057528-23057547 | MS.gene29250:CDS | 35.0% | |
| CTGACATTCTTGATTCTCTT+TGG | + | chr1.1:23057033-23057052 | None:intergenic | 35.0% | |
| GAAGACCATTGTATTCAGTT+TGG | - | chr1.1:23055664-23055683 | MS.gene29250:CDS | 35.0% | |
| GCAAAGATCACAGAATTCAA+AGG | - | chr1.1:23055633-23055652 | MS.gene29250:CDS | 35.0% | |
| GGTTACTTCATTGTTTGGTA+TGG | - | chr1.1:23057417-23057436 | MS.gene29250:CDS | 35.0% | |
| GTAGTAGTACTAGTTGAAGA+AGG | + | chr1.1:23057289-23057308 | None:intergenic | 35.0% | |
| TCAGGATGAATGGAATTTGA+GGG | + | chr1.1:23057235-23057254 | None:intergenic | 35.0% | |
| TCATAAGCAAAACGAGCAAA+TGG | + | chr1.1:23054657-23054676 | None:intergenic | 35.0% | |
| TCTATTACTCATGTCATGCA+TGG | - | chr1.1:23054745-23054764 | MS.gene29250:CDS | 35.0% | |
| TGAAGGCTCTCGATTAAAAT+TGG | - | chr1.1:23056374-23056393 | MS.gene29250:intron | 35.0% | |
| TGGAAATTGTTAACAGCTCT+TGG | - | chr1.1:23057512-23057531 | MS.gene29250:CDS | 35.0% | |
| TTCTGAACCCAAAATTGATG+AGG | - | chr1.1:23055830-23055849 | MS.gene29250:intron | 35.0% | |
| TTGAGTTTGAGAATAAGGTG+TGG | + | chr1.1:23054319-23054338 | None:intergenic | 35.0% | |
| TTGGAGTGTAACAAATATCG+AGG | + | chr1.1:23056785-23056804 | None:intergenic | 35.0% | |
| ! | ATGGATTGATTTAACAGGGA+AGG | - | chr1.1:23055440-23055459 | MS.gene29250:intron | 35.0% |
| ! | CAGCTAACAAAGCACATTTT+AGG | + | chr1.1:23055749-23055768 | None:intergenic | 35.0% |
| ! | GATCTCAAACGATTCTGAAA+TGG | - | chr1.1:23054953-23054972 | MS.gene29250:intron | 35.0% |
| ! | GCCTTAAAGTTGATTCTAAC+TGG | - | chr1.1:23056401-23056420 | MS.gene29250:intron | 35.0% |
| ! | TGCTCGTTTTGCTTATGATA+AGG | - | chr1.1:23054659-23054678 | MS.gene29250:CDS | 35.0% |
| ! | TTCTCAGGTGAGTGAATTTT+TGG | - | chr1.1:23056300-23056319 | MS.gene29250:intron | 35.0% |
| !! | ACAAAAGAACATCGCTTTTC+AGG | - | chr1.1:23056997-23057016 | MS.gene29250:intron | 35.0% |
| !! | AGTTGAGTTGAAAGAGCATT+GGG | - | chr1.1:23057474-23057493 | MS.gene29250:CDS | 35.0% |
| !! | ATTTGAGGGGGTTTTATGTT+TGG | + | chr1.1:23057221-23057240 | None:intergenic | 35.0% |
| !! | TCGGATGGATTGATTTAACA+GGG | - | chr1.1:23055436-23055455 | MS.gene29250:intron | 35.0% |
| AATTCTGGCGCACAATTGAT+CGG | + | chr1.1:23054905-23054924 | None:intergenic | 40.0% | |
| ACAGAATTCAAAGGCTTCAC+TGG | - | chr1.1:23055642-23055661 | MS.gene29250:CDS | 40.0% | |
| ACTTACGAAATGCAGTTGAC+AGG | + | chr1.1:23055870-23055889 | None:intergenic | 40.0% | |
| AGCAAAACGAGCAAATGGAT+CGG | + | chr1.1:23054652-23054671 | None:intergenic | 40.0% | |
| AGCAAATGGATCGGAAAGAA+TGG | + | chr1.1:23054643-23054662 | None:intergenic | 40.0% | |
| AGGATGAATGGAATTTGAGG+GGG | + | chr1.1:23057233-23057252 | None:intergenic | 40.0% | |
| AGTATGACAAAATGTGGTGC+AGG | - | chr1.1:23055605-23055624 | MS.gene29250:CDS | 40.0% | |
| ATAGCCATATCATGACCAGA+AGG | + | chr1.1:23054600-23054619 | None:intergenic | 40.0% | |
| CAGGATGAATGGAATTTGAG+GGG | + | chr1.1:23057234-23057253 | None:intergenic | 40.0% | |
| CATCTCTTAACCGATGTCTT+TGG | + | chr1.1:23055484-23055503 | None:intergenic | 40.0% | |
| CCAAACAATGAAGTAACCAC+AGG | + | chr1.1:23057415-23057434 | None:intergenic | 40.0% | |
| CCAATATTCCTCAGGATGAA+TGG | + | chr1.1:23057245-23057264 | None:intergenic | 40.0% | |
| CCACACCAAACTGAATACAA+TGG | + | chr1.1:23055672-23055691 | None:intergenic | 40.0% | |
| CCATTCATCCTGAGGAATAT+TGG | - | chr1.1:23057242-23057261 | MS.gene29250:CDS | 40.0% | |
| CCTGTGGTTACTTCATTGTT+TGG | - | chr1.1:23057412-23057431 | MS.gene29250:CDS | 40.0% | |
| CGACTCAAATCCAAAGACAT+CGG | - | chr1.1:23055471-23055490 | MS.gene29250:intron | 40.0% | |
| CTCAAATTCCATTCATCCTG+AGG | - | chr1.1:23057234-23057253 | MS.gene29250:CDS | 40.0% | |
| CTCAGGATGAATGGAATTTG+AGG | + | chr1.1:23057236-23057255 | None:intergenic | 40.0% | |
| GAAGGAAGAACAACAGTTGA+TGG | + | chr1.1:23057271-23057290 | None:intergenic | 40.0% | |
| GCAAATGTAGGCTTCTCAAT+TGG | + | chr1.1:23057316-23057335 | None:intergenic | 40.0% | |
| GCAATTGCAGTTGTTATACC+AGG | + | chr1.1:23054979-23054998 | None:intergenic | 40.0% | |
| GCAGTTAGGTTACATGAAGT+AGG | - | chr1.1:23057442-23057461 | MS.gene29250:CDS | 40.0% | |
| GCTTATGGAAATAAGCTGGA+AGG | - | chr1.1:23056831-23056850 | MS.gene29250:intron | 40.0% | |
| TGATCAGTCACAGATCAAGA+CGG | - | chr1.1:23054530-23054549 | MS.gene29250:CDS | 40.0% | |
| TTCACTCACCTGAGAATACT+TGG | + | chr1.1:23056296-23056315 | None:intergenic | 40.0% | |
| ! | ATAGTTTGCACAATTGGCAG+TGG | - | chr1.1:23055197-23055216 | MS.gene29250:intron | 40.0% |
| ! | CCATTGTATTCAGTTTGGTG+TGG | - | chr1.1:23055669-23055688 | MS.gene29250:CDS | 40.0% |
| ! | CGCAACTTTTGTCATGCTTT+TGG | + | chr1.1:23057119-23057138 | None:intergenic | 40.0% |
| ! | GAGAAGCCTACATTTGCTAA+AGG | - | chr1.1:23057319-23057338 | MS.gene29250:CDS | 40.0% |
| ! | TGGACCACTCTTTTATGCTT+AGG | - | chr1.1:23056575-23056594 | MS.gene29250:intron | 40.0% |
| !! | CAGTTGAGTTGAAAGAGCAT+TGG | - | chr1.1:23057473-23057492 | MS.gene29250:CDS | 40.0% |
| !! | GTCGGATGGATTGATTTAAC+AGG | - | chr1.1:23055435-23055454 | MS.gene29250:intron | 40.0% |
| !! | GTTGAGTTGAAAGAGCATTG+GGG | - | chr1.1:23057475-23057494 | MS.gene29250:CDS | 40.0% |
| !! | TCAAGAACTCTAAAGCAGCA+AGG | + | chr1.1:23056147-23056166 | None:intergenic | 40.0% |
| !!! | GAAGGTTTTGGAGTGAAGAA+AGG | + | chr1.1:23054378-23054397 | None:intergenic | 40.0% |
| !!! | TGTAGAAGTGTTTTGTCGGA+TGG | - | chr1.1:23055421-23055440 | MS.gene29250:intron | 40.0% |
| AATTAGATGGGGATTGCCTG+TGG | - | chr1.1:23057396-23057415 | MS.gene29250:CDS | 45.0% | |
| ACAGGCAATCCCCATCTAAT+TGG | + | chr1.1:23057397-23057416 | None:intergenic | 45.0% | |
| CGATGTCATCCTGATATTGC+TGG | - | chr1.1:23054573-23054592 | MS.gene29250:CDS | 45.0% | |
| CTATGTTAGCGGAAAAGAGG+AGG | - | chr1.1:23056717-23056736 | MS.gene29250:intron | 45.0% | |
| GATCAATTGTGCGCCAGAAT+TGG | - | chr1.1:23054904-23054923 | MS.gene29250:intron | 45.0% | |
| GATGGAGTCCAATATTCCTC+AGG | + | chr1.1:23057253-23057272 | None:intergenic | 45.0% | |
| GCTCTATGTTAGCGGAAAAG+AGG | - | chr1.1:23056714-23056733 | MS.gene29250:intron | 45.0% | |
| TGGCAACCAAATAGTGCAAC+TGG | - | chr1.1:23057091-23057110 | MS.gene29250:intron | 45.0% | |
| TGGTCCTTCTGGTCATGATA+TGG | - | chr1.1:23054593-23054612 | MS.gene29250:CDS | 45.0% | |
| TGTCTATGCGACAGCAATTG+AGG | + | chr1.1:23056006-23056025 | None:intergenic | 45.0% | |
| TGTTTGGTATGGCTGCAGTT+AGG | - | chr1.1:23057428-23057447 | MS.gene29250:CDS | 45.0% | |
| !! | AGCAAGGGTTGTTTCTCAGT+GGG | - | chr1.1:23055803-23055822 | MS.gene29250:intron | 45.0% |
| !! | CAAACGATTCTGAAATGGCC+TGG | - | chr1.1:23054958-23054977 | MS.gene29250:intron | 45.0% |
| !! | CTGTACAAGCCGGTTTTGTA+AGG | - | chr1.1:23056749-23056768 | MS.gene29250:intron | 45.0% |
| !! | GAACTCTAAAGCAGCAAGGT+TGG | + | chr1.1:23056143-23056162 | None:intergenic | 45.0% |
| !! | TTGGTGCCAGTTGCACTATT+TGG | + | chr1.1:23057100-23057119 | None:intergenic | 45.0% |
| ACGGTCTGCAACTTCAGTTG+CGG | - | chr1.1:23054806-23054825 | MS.gene29250:CDS | 50.0% | |
| CCACGTGGCAATGTAAGAGT+AGG | - | chr1.1:23056178-23056197 | MS.gene29250:CDS | 50.0% | |
| CCAGAAGGACCAGCAATATC+AGG | + | chr1.1:23054585-23054604 | None:intergenic | 50.0% | |
| CCTACTCTTACATTGCCACG+TGG | + | chr1.1:23056181-23056200 | None:intergenic | 50.0% | |
| CCTGATATTGCTGGTCCTTC+TGG | - | chr1.1:23054582-23054601 | MS.gene29250:CDS | 50.0% | |
| GAATAAGGTGTGGCAGCAAG+AGG | + | chr1.1:23054309-23054328 | None:intergenic | 50.0% | |
| GTAGGTGCAAGTCATACAGC+AGG | - | chr1.1:23056196-23056215 | MS.gene29250:CDS | 50.0% | |
| ! | TTGGGGAGGTTCTCTAGCTT+TGG | - | chr1.1:23057492-23057511 | MS.gene29250:CDS | 50.0% |
| !! | CAAAACCGGCTTGTACAGTG+AGG | + | chr1.1:23056747-23056766 | None:intergenic | 50.0% |
| !! | GAGCAAGGGTTGTTTCTCAG+TGG | - | chr1.1:23055802-23055821 | MS.gene29250:intron | 50.0% |
| !! | GAGTTGAAAGAGCATTGGGG+AGG | - | chr1.1:23057478-23057497 | MS.gene29250:CDS | 50.0% |
| GCACTCCTCACTGTACAAGC+CGG | - | chr1.1:23056739-23056758 | MS.gene29250:intron | 55.0% | |
| TTGATGTCGAAGCAGCCACG+TGG | - | chr1.1:23056163-23056182 | MS.gene29250:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23054294 | 23057563 | 23054294 | ID=MS.gene29250 |
| chr1.1 | mRNA | 23054294 | 23057563 | 23054294 | ID=MS.gene29250.t1;Parent=MS.gene29250 |
| chr1.1 | exon | 23057177 | 23057563 | 23057177 | ID=MS.gene29250.t1.exon1;Parent=MS.gene29250.t1 |
| chr1.1 | CDS | 23057177 | 23057563 | 23057177 | ID=cds.MS.gene29250.t1;Parent=MS.gene29250.t1 |
| chr1.1 | exon | 23055974 | 23056230 | 23055974 | ID=MS.gene29250.t1.exon2;Parent=MS.gene29250.t1 |
| chr1.1 | CDS | 23055974 | 23056230 | 23055974 | ID=cds.MS.gene29250.t1;Parent=MS.gene29250.t1 |
| chr1.1 | exon | 23055551 | 23055731 | 23055551 | ID=MS.gene29250.t1.exon3;Parent=MS.gene29250.t1 |
| chr1.1 | CDS | 23055551 | 23055731 | 23055551 | ID=cds.MS.gene29250.t1;Parent=MS.gene29250.t1 |
| chr1.1 | exon | 23054294 | 23054838 | 23054294 | ID=MS.gene29250.t1.exon4;Parent=MS.gene29250.t1 |
| chr1.1 | CDS | 23054294 | 23054838 | 23054294 | ID=cds.MS.gene29250.t1;Parent=MS.gene29250.t1 |
| Gene Sequence |
| Protein sequence |
