AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33109

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33109.t1 MTR_1g013790 93.254 252 16 1 1 252 5 255 1.18e-177 488
MS.gene33109.t1 MTR_1g013760 46.626 163 74 4 79 235 122 277 1.20e-41 144
MS.gene33109.t1 MTR_4g007060 36.502 263 130 5 5 230 14 276 1.74e-41 143
MS.gene33109.t1 MTR_4g007060 36.090 266 133 4 2 230 45 310 2.88e-41 144
MS.gene33109.t1 MTR_2g105060 37.931 261 120 7 11 236 62 315 1.29e-40 142
MS.gene33109.t1 MTR_2g105060 45.399 163 68 3 82 230 79 234 1.53e-39 137
MS.gene33109.t1 MTR_3g106060 41.250 160 83 2 82 230 123 282 2.98e-37 133
MS.gene33109.t1 MTR_7g110720 41.104 163 82 4 2 157 94 249 1.89e-33 125
MS.gene33109.t1 MTR_7g110720 38.919 185 82 6 2 157 94 276 3.89e-32 122
MS.gene33109.t1 MTR_3g053330 48.421 95 47 1 79 173 235 327 1.16e-26 107
MS.gene33109.t1 MTR_4g094412 41.284 109 56 1 57 157 195 303 2.22e-25 104
MS.gene33109.t1 MTR_4g094412 41.284 109 56 1 57 157 186 294 2.44e-25 103
MS.gene33109.t1 MTR_4g107970 52.439 82 37 1 76 157 159 238 4.13e-25 103
MS.gene33109.t1 MTR_4g107970 52.439 82 37 1 76 157 236 315 5.10e-25 103
MS.gene33109.t1 MTR_4g132430 59.091 66 27 0 92 157 122 187 2.13e-24 100
MS.gene33109.t1 MTR_2g023930 54.795 73 33 0 85 157 293 365 3.25e-24 101
MS.gene33109.t1 MTR_4g132430 59.091 66 27 0 92 157 256 321 6.60e-24 100
MS.gene33109.t1 MTR_7g009730 42.982 114 58 3 41 154 170 276 1.22e-23 99.8
MS.gene33109.t1 MTR_4g007060 39.355 155 72 1 2 134 45 199 1.55e-23 95.5
MS.gene33109.t1 MTR_2g045360 50.575 87 40 2 95 181 209 292 4.09e-23 97.4
MS.gene33109.t1 MTR_4g049760 38.211 123 63 3 35 157 241 350 4.28e-23 98.2
MS.gene33109.t1 MTR_2g088000 52.055 73 35 0 85 157 337 409 6.19e-23 97.8
MS.gene33109.t1 MTR_4g049790 53.030 66 31 0 92 157 307 372 2.32e-21 93.2
MS.gene33109.t1 MTR_5g097490 50.000 76 35 2 82 157 239 311 1.18e-19 87.4
MS.gene33109.t1 MTR_2g033820 45.745 94 43 3 96 182 202 294 2.46e-18 83.6
MS.gene33109.t1 MTR_5g094430 37.815 119 63 4 47 157 174 289 4.28e-18 83.2
MS.gene33109.t1 MTR_5g094430 37.815 119 63 4 47 157 196 311 4.30e-18 83.2
MS.gene33109.t1 MTR_5g074400 50.794 63 30 1 95 157 418 479 4.37e-18 83.6
MS.gene33109.t1 MTR_5g074400 48.333 60 29 2 98 157 244 301 1.89e-12 67.0
MS.gene33109.t1 MTR_5g094430 37.815 119 63 4 47 157 308 423 5.16e-18 83.2
MS.gene33109.t1 MTR_3g056100 41.935 93 48 3 68 157 372 461 6.04e-18 83.2
MS.gene33109.t1 MTR_3g056100 41.935 93 48 3 68 157 228 317 6.44e-18 82.8
MS.gene33109.t1 MTR_3g056100 41.935 93 48 3 68 157 241 330 6.58e-18 82.8
MS.gene33109.t1 MTR_3g056100 41.935 93 48 3 68 157 385 474 6.70e-18 83.2
MS.gene33109.t1 MTR_4g094908 51.613 62 30 0 95 156 264 325 1.26e-17 81.3
MS.gene33109.t1 MTR_7g011820 40.952 105 53 4 70 168 382 483 1.92e-17 81.6
MS.gene33109.t1 MTR_7g011820 48.333 60 29 2 98 157 229 286 3.56e-11 63.2
MS.gene33109.t1 MTR_2g024350 46.970 66 35 0 92 157 3 68 3.40e-17 78.2
MS.gene33109.t1 MTR_1g086790 50.769 65 31 1 96 160 157 220 3.48e-17 79.7
MS.gene33109.t1 MTR_3g031220 49.206 63 31 1 95 157 363 424 4.07e-17 80.5
MS.gene33109.t1 MTR_3g031220 50.000 60 28 2 98 157 199 256 4.87e-13 68.6
MS.gene33109.t1 MTR_1g070455 48.485 66 33 1 95 159 291 356 4.10e-17 80.1
MS.gene33109.t1 MTR_2g024380 50.820 61 30 0 97 157 251 311 8.15e-17 79.7
MS.gene33109.t1 MTR_1g015140 50.000 60 29 1 95 154 100 158 1.07e-16 75.5
MS.gene33109.t1 MTR_3g009470 46.575 73 38 1 85 157 483 554 1.13e-16 79.3
MS.gene33109.t1 MTR_3g009470 41.333 75 35 3 90 157 266 338 9.15e-11 62.0
MS.gene33109.t1 MTR_5g016610 50.000 62 31 0 95 156 197 258 1.24e-16 77.4
MS.gene33109.t1 MTR_5g042920 40.404 99 49 3 67 157 283 379 1.27e-16 79.0
MS.gene33109.t1 MTR_5g042920 35.922 103 58 3 98 200 152 246 5.74e-14 71.2
MS.gene33109.t1 MTR_7g079010 53.333 60 27 1 95 154 139 197 1.87e-16 76.3
MS.gene33109.t1 MTR_4g013260 45.205 73 39 1 85 157 324 395 2.40e-16 78.2
MS.gene33109.t1 MTR_4g013260 45.902 61 32 1 97 157 184 243 9.58e-13 67.8
MS.gene33109.t1 MTR_4g082580 42.683 82 43 3 76 157 260 337 3.28e-16 77.4
MS.gene33109.t1 MTR_7g028415 48.387 62 31 1 95 156 91 151 3.37e-16 74.3
MS.gene33109.t1 MTR_7g028710 48.387 62 31 1 95 156 91 151 3.37e-16 74.3
MS.gene33109.t1 MTR_7g109800 46.053 76 38 2 96 171 144 216 3.38e-16 76.6
MS.gene33109.t1 MTR_7g071120 45.205 73 39 1 85 157 312 383 3.83e-16 77.8
MS.gene33109.t1 MTR_7g071120 34.058 138 63 7 84 221 158 267 5.25e-12 65.5
MS.gene33109.t1 MTR_4g094588 41.111 90 43 3 96 176 177 265 4.61e-16 76.6
MS.gene33109.t1 MTR_5g091390 48.387 62 31 1 96 157 156 216 6.90e-16 75.9
MS.gene33109.t1 MTR_1g009613 46.774 62 33 0 95 156 260 321 7.18e-16 76.3
MS.gene33109.t1 MTR_7g100510 46.970 66 34 1 92 157 356 420 7.26e-16 76.6
MS.gene33109.t1 MTR_7g100510 48.571 70 34 2 98 167 190 257 5.27e-15 74.3
MS.gene33109.t1 MTR_2g016770 48.333 60 31 0 98 157 36 95 1.25e-15 73.9
MS.gene33109.t1 MTR_0117s0040 51.667 60 29 0 95 154 72 131 1.35e-15 74.3
MS.gene33109.t1 MTR_2g016770 48.333 60 31 0 98 157 28 87 1.46e-15 73.6
MS.gene33109.t1 MTR_7g080020 47.619 63 32 1 95 157 491 552 1.89e-15 75.9
MS.gene33109.t1 MTR_7g080020 42.500 80 42 3 97 176 280 355 2.05e-11 63.9
MS.gene33109.t1 MTR_8g087000 48.333 60 31 0 98 157 77 136 1.91e-15 73.9
MS.gene33109.t1 MTR_8g087000 48.333 60 31 0 98 157 78 137 1.94e-15 73.9
MS.gene33109.t1 MTR_3g104750 46.667 60 31 1 95 154 102 160 3.53e-15 71.2
MS.gene33109.t1 MTR_7g080000 46.032 63 33 1 95 157 430 491 3.82e-15 75.1
MS.gene33109.t1 MTR_7g080000 40.741 81 44 3 96 176 233 309 6.02e-12 65.5
MS.gene33109.t1 MTR_3g095080 44.615 65 35 1 95 159 142 205 5.60e-15 72.0
MS.gene33109.t1 MTR_3g108960 50.000 60 30 0 95 154 312 371 5.74e-15 73.9
MS.gene33109.t1 MTR_3g095080 44.615 65 35 1 95 159 166 229 5.75e-15 72.4
MS.gene33109.t1 MTR_5g043880 37.615 109 57 4 96 194 123 230 6.37e-15 72.8
MS.gene33109.t1 MTR_8g007270 43.939 66 36 1 95 160 152 216 1.10e-14 71.2
MS.gene33109.t1 MTR_8g092140 43.077 65 36 1 95 159 158 221 1.64e-14 71.2
MS.gene33109.t1 MTR_4g130900 46.032 63 33 1 95 157 357 418 1.73e-14 72.8
MS.gene33109.t1 MTR_1g077780 44.444 63 34 1 95 157 60 121 1.78e-14 68.9
MS.gene33109.t1 MTR_7g109600 48.333 60 31 0 98 157 54 113 1.88e-14 71.2
MS.gene33109.t1 MTR_2g083870 45.455 66 36 0 92 157 75 140 2.77e-14 70.9
MS.gene33109.t1 MTR_4g127040 47.541 61 32 0 95 155 243 303 2.80e-14 71.6
MS.gene33109.t1 MTR_7g079040 29.193 161 87 4 41 191 115 258 6.62e-14 70.5
MS.gene33109.t1 MTR_4g122530 40.506 79 44 2 79 157 192 267 6.93e-14 70.9
MS.gene33109.t1 MTR_4g047580 42.424 66 38 0 92 157 276 341 7.09e-14 71.2
MS.gene33109.t1 MTR_2g032030 43.939 66 37 0 94 159 264 329 8.97e-14 70.5
MS.gene33109.t1 MTR_2g032030 43.939 66 37 0 94 159 264 329 9.56e-14 70.5
MS.gene33109.t1 MTR_8g096730 42.029 69 37 2 95 161 68 135 1.36e-13 66.6
MS.gene33109.t1 MTR_7g062220 50.877 57 27 1 98 154 125 180 1.55e-13 69.3
MS.gene33109.t1 MTR_8g028565 45.902 61 33 0 98 158 156 216 2.04e-13 69.3
MS.gene33109.t1 MTR_8g092010 42.857 63 35 1 95 157 106 167 3.49e-13 66.6
MS.gene33109.t1 MTR_8g098945 42.169 83 43 1 98 180 130 207 3.61e-13 67.8
MS.gene33109.t1 MTR_3g031220 50.000 60 28 2 98 157 199 256 3.73e-13 68.6
MS.gene33109.t1 MTR_3g095040 43.284 67 37 1 95 161 116 181 5.43e-13 66.2
MS.gene33109.t1 MTR_6g086555 34.737 95 58 3 64 157 175 266 7.12e-13 67.8
MS.gene33109.t1 MTR_5g074200 28.743 167 94 6 18 167 130 288 3.17e-12 65.9
MS.gene33109.t1 MTR_1g099600 43.333 60 34 0 98 157 186 245 3.30e-12 65.5
MS.gene33109.t1 MTR_8g067635 30.864 162 95 3 8 157 253 409 6.15e-12 65.5
MS.gene33109.t1 MTR_8g067650 47.619 63 33 0 95 157 337 399 8.65e-12 65.1
MS.gene33109.t1 MTR_6g053200 35.398 113 63 3 58 165 291 398 2.22e-11 63.5
MS.gene33109.t1 MTR_1g078260 35.870 92 55 3 65 155 217 305 4.10e-11 62.8
MS.gene33109.t1 MTR_8g069935 42.623 61 35 0 97 157 331 391 5.45e-11 62.4
MS.gene33109.t1 MTR_3g090860 33.333 105 66 2 96 196 132 236 5.74e-11 62.0
MS.gene33109.t1 MTR_3g009470 45.902 61 31 2 97 157 280 338 8.64e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33109.t1 AT1G80840 36.996 273 136 4 2 238 27 299 1.83e-45 154
MS.gene33109.t1 AT4G31800 49.351 154 70 2 83 236 97 242 3.58e-42 144
MS.gene33109.t1 AT4G31800 49.351 154 70 2 83 236 162 307 1.19e-41 145
MS.gene33109.t1 AT2G25000 36.923 260 115 8 2 240 39 270 4.60e-38 134
MS.gene33109.t1 AT2G25000 36.614 254 112 8 8 240 2 227 1.63e-37 132
MS.gene33109.t1 AT2G25000 36.614 254 112 8 8 240 2 227 1.63e-37 132
MS.gene33109.t1 AT2G25000 37.008 254 111 8 8 240 24 249 4.37e-37 131
MS.gene33109.t1 AT1G68150 42.105 114 64 1 44 157 184 295 3.26e-26 105
MS.gene33109.t1 AT4G04450 47.191 89 47 0 85 173 186 274 5.49e-26 105
MS.gene33109.t1 AT4G04450 47.191 89 47 0 85 173 280 368 1.44e-25 105
MS.gene33109.t1 AT4G22070 56.164 73 32 0 85 157 285 357 3.84e-25 103
MS.gene33109.t1 AT4G22070 56.164 73 32 0 85 157 285 357 3.84e-25 103
MS.gene33109.t1 AT4G22070 56.164 73 32 0 85 157 285 357 3.84e-25 103
MS.gene33109.t1 AT4G22070 56.164 73 32 0 85 157 285 357 3.84e-25 103
MS.gene33109.t1 AT1G62300 56.164 73 32 0 85 157 300 372 4.65e-25 103
MS.gene33109.t1 AT4G01720 31.250 208 91 5 2 157 92 299 1.03e-23 99.8
MS.gene33109.t1 AT5G15130 58.065 62 26 0 96 157 226 287 3.11e-23 98.6
MS.gene33109.t1 AT5G15130 58.065 62 26 0 96 157 184 245 3.18e-23 98.2
MS.gene33109.t1 AT1G18860 53.165 79 35 1 79 157 223 299 3.29e-23 98.2
MS.gene33109.t1 AT4G31800 75.000 52 13 0 83 134 162 213 5.83e-23 94.0
MS.gene33109.t1 AT1G69810 33.533 167 105 4 3 167 54 216 8.13e-23 95.5
MS.gene33109.t1 AT1G69810 33.533 167 105 4 3 167 112 274 1.43e-22 95.5
MS.gene33109.t1 AT2G04880 32.468 154 83 5 95 238 281 423 4.44e-19 86.3
MS.gene33109.t1 AT2G04880 42.857 63 34 2 95 157 109 169 2.07e-11 63.9
MS.gene33109.t1 AT2G04880 41.935 93 43 2 95 187 305 386 5.17e-19 86.3
MS.gene33109.t1 AT2G04880 42.857 63 34 2 95 157 109 169 2.31e-11 63.5
MS.gene33109.t1 AT3G04670 39.623 106 59 1 49 154 219 319 1.74e-18 83.6
MS.gene33109.t1 AT5G28650 37.168 113 66 1 42 154 212 319 6.32e-18 82.0
MS.gene33109.t1 AT2G38470 41.176 85 40 2 95 179 360 434 1.11e-17 82.4
MS.gene33109.t1 AT2G38470 40.506 79 37 3 87 157 166 242 7.71e-13 68.2
MS.gene33109.t1 AT5G56270 50.794 63 30 1 95 157 485 546 1.40e-17 82.0
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 170 264 1.77e-17 81.3
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 170 264 1.77e-17 81.3
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 170 264 1.77e-17 81.3
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 170 264 1.77e-17 81.3
MS.gene33109.t1 AT5G41570 41.000 100 49 4 55 154 65 154 2.22e-17 77.8
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 274 368 2.39e-17 81.3
MS.gene33109.t1 AT1G64000 45.205 73 37 2 82 154 101 170 2.73e-17 77.8
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 306 400 2.90e-17 81.3
MS.gene33109.t1 AT4G26640 41.667 96 50 2 67 157 346 440 2.92e-17 81.3
MS.gene33109.t1 AT2G03340 47.143 70 36 1 88 157 406 474 5.44e-17 80.5
MS.gene33109.t1 AT2G03340 37.736 106 55 5 61 157 205 308 1.06e-14 73.6
MS.gene33109.t1 AT1G29860 48.387 62 31 1 96 157 135 195 6.14e-17 78.6
MS.gene33109.t1 AT2G30590 50.000 60 30 0 95 154 311 370 1.23e-16 79.0
MS.gene33109.t1 AT5G13080 50.000 60 29 1 95 154 65 123 1.27e-16 74.7
MS.gene33109.t1 AT1G13960 45.714 70 37 1 88 157 247 315 1.45e-16 78.6
MS.gene33109.t1 AT1G13960 43.210 81 35 4 77 157 65 134 1.13e-12 67.4
MS.gene33109.t1 AT1G13960 47.619 63 32 1 95 157 407 468 1.47e-16 79.0
MS.gene33109.t1 AT1G13960 43.210 81 35 4 77 157 218 287 9.69e-13 67.8
MS.gene33109.t1 AT2G23320 49.153 59 30 0 98 156 241 299 1.55e-16 77.8
MS.gene33109.t1 AT3G62340 39.796 98 53 2 92 184 113 209 1.60e-16 77.4
MS.gene33109.t1 AT3G01080 45.714 70 37 1 88 157 297 365 1.87e-16 78.6
MS.gene33109.t1 AT3G01080 45.714 70 37 1 88 157 335 403 2.21e-16 78.6
MS.gene33109.t1 AT4G18170 45.161 62 33 1 96 157 171 231 2.79e-16 77.4
MS.gene33109.t1 AT2G47260 44.578 83 45 1 96 178 173 254 3.37e-16 77.0
MS.gene33109.t1 AT2G30250 40.698 86 48 2 72 157 305 387 7.87e-16 76.6
MS.gene33109.t1 AT2G30250 39.130 92 44 3 98 189 167 246 8.74e-12 64.7
MS.gene33109.t1 AT2G24570 48.333 60 31 0 95 154 241 300 8.53e-16 75.9
MS.gene33109.t1 AT4G31550 48.333 60 31 0 95 154 244 303 1.02e-15 75.9
MS.gene33109.t1 AT4G31550 48.333 60 31 0 95 154 243 302 1.02e-15 75.9
MS.gene33109.t1 AT3G01970 46.377 69 34 2 95 161 63 130 1.19e-15 72.4
MS.gene33109.t1 AT4G24240 45.161 62 34 0 95 156 279 340 1.20e-15 75.9
MS.gene33109.t1 AT5G49520 46.774 62 32 1 96 157 220 280 1.29e-15 75.9
MS.gene33109.t1 AT5G26170 43.750 64 35 1 95 158 111 173 1.87e-15 72.4
MS.gene33109.t1 AT5G07100 42.029 69 39 1 95 163 139 206 2.12e-15 73.2
MS.gene33109.t1 AT5G07100 48.571 70 34 2 98 167 25 92 4.29e-13 67.0
MS.gene33109.t1 AT5G07100 42.029 69 39 1 95 163 139 206 2.12e-15 73.2
MS.gene33109.t1 AT5G07100 48.571 70 34 2 98 167 25 92 4.29e-13 67.0
MS.gene33109.t1 AT5G07100 42.029 69 39 1 95 163 139 206 2.12e-15 73.2
MS.gene33109.t1 AT5G07100 48.571 70 34 2 98 167 25 92 4.29e-13 67.0
MS.gene33109.t1 AT5G07100 42.029 69 39 1 95 163 139 206 2.12e-15 73.2
MS.gene33109.t1 AT5G07100 48.571 70 34 2 98 167 25 92 4.29e-13 67.0
MS.gene33109.t1 AT2G37260 38.095 105 59 2 50 154 227 325 2.15e-15 75.1
MS.gene33109.t1 AT2G37260 47.541 61 30 2 98 158 86 144 1.64e-12 66.6
MS.gene33109.t1 AT2G37260 38.095 105 59 2 50 154 225 323 2.19e-15 75.1
MS.gene33109.t1 AT2G37260 44.444 72 36 3 87 158 75 142 1.62e-12 66.6
MS.gene33109.t1 AT2G46130 39.560 91 46 3 64 154 5 86 2.78e-15 70.1
MS.gene33109.t1 AT2G37260 47.059 68 35 1 87 154 339 405 3.21e-15 75.1
MS.gene33109.t1 AT2G37260 47.541 61 30 2 98 158 166 224 1.54e-12 67.0
MS.gene33109.t1 AT5G07100 44.444 63 34 1 95 157 232 293 3.31e-15 73.9
MS.gene33109.t1 AT5G07100 48.571 70 34 2 98 167 118 185 1.04e-12 67.0
MS.gene33109.t1 AT5G46350 43.548 62 34 1 96 157 182 242 3.52e-15 74.3
MS.gene33109.t1 AT2G44745 43.478 69 38 1 95 163 143 210 4.11e-15 72.4
MS.gene33109.t1 AT4G30935 44.595 74 38 2 95 166 329 401 4.43e-15 74.7
MS.gene33109.t1 AT1G55600 51.667 60 28 1 98 157 308 366 6.04e-15 74.3
MS.gene33109.t1 AT1G29280 46.667 60 32 0 98 157 75 134 7.12e-15 72.4
MS.gene33109.t1 AT1G69310 46.154 65 31 2 96 157 146 209 9.95e-15 72.4
MS.gene33109.t1 AT1G69310 46.154 65 31 2 96 157 146 209 9.95e-15 72.4
MS.gene33109.t1 AT1G69310 46.154 65 31 2 96 157 146 209 9.95e-15 72.4
MS.gene33109.t1 AT2G21900 40.260 77 45 1 81 157 93 168 1.79e-14 70.5
MS.gene33109.t1 AT4G26440 44.872 78 40 2 95 172 370 444 3.06e-14 72.4
MS.gene33109.t1 AT4G26440 33.628 113 64 4 98 205 179 285 5.35e-11 62.8
MS.gene33109.t1 AT4G39410 43.077 65 36 1 95 159 221 284 6.18e-14 70.5
MS.gene33109.t1 AT3G58710 37.634 93 58 0 68 160 41 133 7.80e-14 69.7
MS.gene33109.t1 AT3G58710 47.619 63 33 0 98 160 72 134 8.61e-14 69.7
MS.gene33109.t1 AT2G34830 43.939 66 37 0 94 159 212 277 1.32e-13 70.1
MS.gene33109.t1 AT2G34830 43.939 66 37 0 94 159 221 286 1.35e-13 70.1
MS.gene33109.t1 AT5G43290 43.077 65 36 1 90 154 107 170 2.53e-13 68.6
MS.gene33109.t1 AT1G30650 45.312 64 35 0 94 157 214 277 2.67e-13 69.3
MS.gene33109.t1 AT5G64810 41.667 60 34 1 95 154 108 166 3.59e-13 66.6
MS.gene33109.t1 AT4G01250 41.176 85 49 1 98 181 129 213 6.93e-13 67.4
MS.gene33109.t1 AT5G52830 46.667 60 32 0 98 157 166 225 3.83e-12 65.5
MS.gene33109.t1 AT4G23550 41.270 63 37 0 95 157 138 200 4.13e-12 65.1
MS.gene33109.t1 AT5G45050 45.000 60 33 0 98 157 1181 1240 7.22e-12 65.5
MS.gene33109.t1 AT5G45050 45.000 60 33 0 98 157 1042 1101 7.31e-12 65.5
MS.gene33109.t1 AT5G45050 45.000 60 33 0 98 157 1153 1212 7.54e-12 65.5
MS.gene33109.t1 AT2G46400 37.000 100 56 3 81 178 90 184 3.77e-11 62.4
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.13e-11 63.2
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.13e-11 63.2
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.28e-11 63.2
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.28e-11 63.2
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 392 493 5.49e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.55e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.79e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.87e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 5.93e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 6.10e-11 62.8
MS.gene33109.t1 AT4G12020 31.731 104 69 2 88 191 459 560 6.38e-11 62.8

Find 39 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGTTCAAATCATCAAAT+TGG 0.248317 1.1:+7378732 MS.gene33109:CDS
CATACCAAACTTTCATCATT+AGG 0.285634 1.1:-7378843 None:intergenic
TTAGAGATTGATGAACCTTT+AGG 0.306541 1.1:-7379420 None:intergenic
CTTCTCCTAGAGCTTACTTT+AGG 0.314347 1.1:+7379114 MS.gene33109:CDS
TGAAGTCAGGATCTTTGATT+AGG 0.319072 1.1:-7379560 None:intergenic
AAATCTCGATTTGAATCTTT+CGG 0.326816 1.1:+7379647 MS.gene33109:CDS
CTCACAAAGTCTAGTATTTG+TGG 0.333230 1.1:-7379478 None:intergenic
TCAACCTAATGATGAAAGTT+TGG 0.350703 1.1:+7378839 MS.gene33109:CDS
GGCTATCAATGGAGGAAGTA+TGG 0.366288 1.1:+7379068 MS.gene33109:CDS
TCTAGGAGAAGCATTGTCTT+TGG 0.371896 1.1:-7379102 None:intergenic
TCTTTGTCATTCAATGTTGT+TGG 0.386703 1.1:-7379453 None:intergenic
GATGGTTTGAATGACTCATT+AGG 0.404082 1.1:-7379387 None:intergenic
TCATCTTCAAGAAATCAAAA+AGG 0.410845 1.1:+7378692 MS.gene33109:CDS
GGCTATTAGAATGGATGATA+AGG 0.430275 1.1:+7378371 None:intergenic
GAAGTCAGGATCTTTGATTA+GGG 0.432423 1.1:-7379559 None:intergenic
TAAGTTCAAATCATCAAATT+GGG 0.447315 1.1:+7378733 MS.gene33109:CDS
ATCCTTGTTGCAACATATGA+TGG 0.459740 1.1:+7379345 MS.gene33109:CDS
GCTAATGCTGCAGTGAAGTC+AGG 0.465446 1.1:-7379573 None:intergenic
ATGGAGGAAGTATGGTCAAA+AGG 0.476669 1.1:+7379076 MS.gene33109:CDS
CCATCTTCATCCACACCTAA+AGG 0.490427 1.1:+7379405 MS.gene33109:CDS
AATATATAGATAATAAAAGA+TGG 0.494453 1.1:+7379047 MS.gene33109:intron
TGCGGGGCAACTAGGAGCCA+TGG 0.508480 1.1:-7379141 None:intergenic
AGCTTACTTTAGGTGCTCCA+TGG 0.512350 1.1:+7379124 MS.gene33109:CDS
GAGAATGTCATGCAACAGTT+TGG 0.514761 1.1:+7379498 MS.gene33109:CDS
CTTATGTTCTTGATCAGTGA+CGG 0.524464 1.1:-7379613 None:intergenic
GTCATGCAACAGTTTGGCTA+TGG 0.529941 1.1:+7379504 MS.gene33109:CDS
TAATAAAAGATGGCTATCAA+TGG 0.531094 1.1:+7379057 MS.gene33109:CDS
CCTTTAGGTGTGGATGAAGA+TGG 0.531585 1.1:-7379405 None:intergenic
GAGCACCTAAAGTAAGCTCT+AGG 0.566462 1.1:-7379119 None:intergenic
GTTCGTACAAAGACTTGTAG+TGG 0.571338 1.1:-7378816 None:intergenic
TGCAACAGTTTGGCTATGGA+AGG 0.583957 1.1:+7379508 MS.gene33109:CDS
CTCCATCATATGTTGCAACA+AGG 0.587646 1.1:-7379347 None:intergenic
AGAGTTACAACAAGTGAGAG+AGG 0.590536 1.1:+7378608 MS.gene33109:CDS
TCTCGATTTGAATCTTTCGG+AGG 0.620338 1.1:+7379650 MS.gene33109:CDS
TAAAAGATGGCTATCAATGG+AGG 0.624488 1.1:+7379060 MS.gene33109:CDS
GATTGATGAACCTTTAGGTG+TGG 0.626271 1.1:-7379415 None:intergenic
TATGATGGAGAGCACAACCA+TGG 0.692151 1.1:+7379360 MS.gene33109:CDS
ATGACTCATTAGGAACACCA+TGG 0.708357 1.1:-7379377 None:intergenic
GATCAAGAACATAAGCGACA+AGG 0.725331 1.1:+7379621 MS.gene33109:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGATAATAAAAGA+TGG + chr1.1:7379047-7379066 MS.gene33109:intron 10.0%
!!! ATCTTTTAATTTTGCTTATT+AGG + chr1.1:7378507-7378526 MS.gene33109:intron 15.0%
!!! TTACTTCATTTACTAATTTT+AGG + chr1.1:7379296-7379315 MS.gene33109:intron 15.0%
!! ATAAGTTCAAATCATCAAAT+TGG + chr1.1:7378732-7378751 MS.gene33109:CDS 20.0%
!! ATGATAAGGTAACTAATTAT+TGG + chr1.1:7378385-7378404 MS.gene33109:intron 20.0%
!! TAAGTTCAAATCATCAAATT+GGG + chr1.1:7378733-7378752 MS.gene33109:CDS 20.0%
!! TGATTCTATGAAAAAAATTG+TGG + chr1.1:7379255-7379274 MS.gene33109:intron 20.0%
!!! AGGTATATACATATTTTATG+TGG + chr1.1:7379171-7379190 MS.gene33109:intron 20.0%
!!! TTAACAATTTTGATGTGTTT+AGG + chr1.1:7378569-7378588 MS.gene33109:intron 20.0%
! AAATCAAAAAGGAAGAACAT+AGG + chr1.1:7378703-7378722 MS.gene33109:CDS 25.0%
! AATCAAAAAGGAAGAACATA+GGG + chr1.1:7378704-7378723 MS.gene33109:CDS 25.0%
! GGTTTCTTATTATACTTAGT+AGG + chr1.1:7378433-7378452 MS.gene33109:intron 25.0%
! TAATAAAAGATGGCTATCAA+TGG + chr1.1:7379057-7379076 MS.gene33109:CDS 25.0%
! TCATCTTCAAGAAATCAAAA+AGG + chr1.1:7378692-7378711 MS.gene33109:CDS 25.0%
! TGCAAAAATGCATAAATGAT+AGG + chr1.1:7379319-7379338 MS.gene33109:CDS 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + chr1.1:7379647-7379666 MS.gene33109:CDS 25.0%
!! ACAACAAATTAGTGATAATG+AGG - chr1.1:7378869-7378888 None:intergenic 25.0%
!!! ATTGGTTTTTTTGTTGTTGA+AGG + chr1.1:7378403-7378422 MS.gene33109:intron 25.0%
!!! TGTATATACCTTCTTTTTTG+CGG - chr1.1:7379162-7379181 None:intergenic 25.0%
!!! TTTGTTGTTGAAGGAATTAT+TGG + chr1.1:7378412-7378431 MS.gene33109:intron 25.0%
ATCAAAAAGGAAGAACATAG+GGG + chr1.1:7378705-7378724 MS.gene33109:CDS 30.0%
CATACCAAACTTTCATCATT+AGG - chr1.1:7378846-7378865 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + chr1.1:7378839-7378858 MS.gene33109:CDS 30.0%
TCTTTGTCATTCAATGTTGT+TGG - chr1.1:7379456-7379475 None:intergenic 30.0%
TGATTTCAAGAAAGCTTACA+AGG + chr1.1:7379207-7379226 MS.gene33109:intron 30.0%
TTAGAGATTGATGAACCTTT+AGG - chr1.1:7379423-7379442 None:intergenic 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - chr1.1:7378765-7378784 None:intergenic 30.0%
!! ACAATTTTGATGTGTTTAGG+TGG + chr1.1:7378572-7378591 MS.gene33109:intron 30.0%
!!! GTATATACCTTCTTTTTTGC+GGG - chr1.1:7379161-7379180 None:intergenic 30.0%
!!! TATATACCTTCTTTTTTGCG+GGG - chr1.1:7379160-7379179 None:intergenic 30.0%
ATCCTTGTTGCAACATATGA+TGG + chr1.1:7379345-7379364 MS.gene33109:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - chr1.1:7379481-7379500 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - chr1.1:7379616-7379635 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - chr1.1:7379562-7379581 None:intergenic 35.0%
GATGGTTTGAATGACTCATT+AGG - chr1.1:7379390-7379409 None:intergenic 35.0%
TAAAAGATGGCTATCAATGG+AGG + chr1.1:7379060-7379079 MS.gene33109:CDS 35.0%
TGAAGTCAGGATCTTTGATT+AGG - chr1.1:7379563-7379582 None:intergenic 35.0%
AGAGTTACAACAAGTGAGAG+AGG + chr1.1:7378608-7378627 MS.gene33109:CDS 40.0%
ATGACTCATTAGGAACACCA+TGG - chr1.1:7379380-7379399 None:intergenic 40.0%
CTCCATCATATGTTGCAACA+AGG - chr1.1:7379350-7379369 None:intergenic 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + chr1.1:7379114-7379133 MS.gene33109:CDS 40.0%
GAGAATGTCATGCAACAGTT+TGG + chr1.1:7379498-7379517 MS.gene33109:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + chr1.1:7379621-7379640 MS.gene33109:CDS 40.0%
GATTGATGAACCTTTAGGTG+TGG - chr1.1:7379418-7379437 None:intergenic 40.0%
GTTCGTACAAAGACTTGTAG+TGG - chr1.1:7378819-7378838 None:intergenic 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + chr1.1:7379076-7379095 MS.gene33109:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + chr1.1:7379650-7379669 MS.gene33109:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - chr1.1:7379105-7379124 None:intergenic 40.0%
AGCTTACTTTAGGTGCTCCA+TGG + chr1.1:7379124-7379143 MS.gene33109:CDS 45.0%
CCATCTTCATCCACACCTAA+AGG + chr1.1:7379405-7379424 MS.gene33109:CDS 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - chr1.1:7379408-7379427 None:intergenic 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1.1:7379122-7379141 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + chr1.1:7379068-7379087 MS.gene33109:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + chr1.1:7379504-7379523 MS.gene33109:CDS 45.0%
TAGTTGCCCCGCAAAAAAGA+AGG + chr1.1:7379151-7379170 MS.gene33109:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + chr1.1:7379508-7379527 MS.gene33109:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + chr1.1:7379360-7379379 MS.gene33109:CDS 45.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - chr1.1:7378804-7378823 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - chr1.1:7378805-7378824 None:intergenic 45.0%
!!! TTCTTTTTTGCGGGGCAACT+AGG - chr1.1:7379152-7379171 None:intergenic 45.0%
GCTAATGCTGCAGTGAAGTC+AGG - chr1.1:7379576-7379595 None:intergenic 50.0%
TGCGGGGCAACTAGGAGCCA+TGG - chr1.1:7379144-7379163 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7378381 7379677 7378381 ID=MS.gene33109
chr1.1 mRNA 7378381 7379677 7378381 ID=MS.gene33109.t1;Parent=MS.gene33109
chr1.1 exon 7378381 7378392 7378381 ID=MS.gene33109.t1.exon1;Parent=MS.gene33109.t1
chr1.1 CDS 7378381 7378392 7378381 ID=cds.MS.gene33109.t1;Parent=MS.gene33109.t1
chr1.1 exon 7378591 7378860 7378591 ID=MS.gene33109.t1.exon2;Parent=MS.gene33109.t1
chr1.1 CDS 7378591 7378860 7378591 ID=cds.MS.gene33109.t1;Parent=MS.gene33109.t1
chr1.1 exon 7379056 7379172 7379056 ID=MS.gene33109.t1.exon3;Parent=MS.gene33109.t1
chr1.1 CDS 7379056 7379172 7379056 ID=cds.MS.gene33109.t1;Parent=MS.gene33109.t1
chr1.1 exon 7379318 7379677 7379318 ID=MS.gene33109.t1.exon4;Parent=MS.gene33109.t1
chr1.1 CDS 7379318 7379677 7379318 ID=cds.MS.gene33109.t1;Parent=MS.gene33109.t1
Gene Sequence

>MS.gene33109

ATGGATGATAAGGTAACTAATTATTGGTTTTTTTGTTGTTGAAGGAATTATTGGTTTCTTATTATACTTAGTAGGAACATCTCATTCTAATGAACATCTTTTTTATTTTTTATTTTTTTTACTTACATCTTTTAATTTTGCTTATTAGGAACACATGCATGCAACTAATTCTAAAAGCTCATAATTAATTAACAATTTTGATGTGTTTAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAGAGAGGAGAACAATACTCTAAGATTCATGCTTGAAGTTATGAGTATCAAATGCACAAAGCTTGAATCTCATCTTCAAGAAATCAAAAAGGAAGAACATAGGGGAATCATAAGTTCAAATCATCAAATTGGGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGATTCCCACAGCACAAAAGCCACTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGGTATGCCTCATTATCACTAATTTGTTGTGTATCAAATTAATTAATTAATCTCAAATTATCACAAAATTTGAGCAAATCACTTTAAAGAATACATAAAATAATATCACTCATTGATAAAAAAAAATAAAAAATCAAATATTTGCTCTCAAATTACATTTTTTAATATCAATTATTGATTTTTTTTTTAATATATAGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCCGCAAAAAAGAAGGTATATACATATTTTATGTGGATATATATGCATATGATTTCAAGAAAGCTTACAAGGTTATTATATGATGCGTTTTTATGAATGATTCTATGAAAAAAATTGTGGTTTAAAGAGATTCTAACGTTACTTCATTTACTAATTTTAGGTGCAAAAATGCATAAATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGTTCCTAATGAGTCATTCAAACCATCTTCATCCACACCTAAAGGTTCATCAATCTCTAATAATAAATTACCAACAACATTGAATGACAAAGAAGCCACAAATACTAGACTTTGTGAGAATGTCATGCAACAGTTTGGCTATGGAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCGTCACTGATCAAGAACATAAGCGACAAGGTCTAAATCTCGATTTGAATCTTTCGGAGGAGTGA
Protein sequence

>MS.gene33109.t1

MDDKVETLELELQQVREENNTLRFMLEVMSIKCTKLESHLQEIKKEEHRGIISSNHQIGSIPNIDSSKRARLEIPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCINDRSILVATYDGEHNHGVPNESFKPSSSTPKGSSISNNKLPTTLNDKEATNTRLCENVMQQFGYGRHIKIEEYASSLIKDPDFTAALAEAVARTVTDQEHKRQGLNLDLNLSEE