Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34683.t1 | XP_003628361.1 | 93.5 | 477 | 29 | 2 | 1 | 475 | 15 | 491 | 1.20E-244 | 855.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34683.t1 | Q9SWI1 | 35.7 | 470 | 185 | 21 | 12 | 443 | 21 | 411 | 3.2e-41 | 171.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34683.t1 | G7LA55 | 93.5 | 477 | 29 | 2 | 1 | 475 | 15 | 491 | 8.4e-245 | 855.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene34683 | 0.830014 | 3.73E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene34683 | 0.81017 | 1.32E-50 | -1.69E-46 |
| MS.gene049396 | MS.gene34683 | 0.82274 | 2.02E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene34683 | 0.807985 | 3.87E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene34683 | 0.818122 | 2.31E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene34683 | 0.827955 | 1.18E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene34683 | 0.824056 | 9.93E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene34683 | 0.807931 | 3.97E-50 | -1.69E-46 |
| MS.gene052632 | MS.gene34683 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene34683 | 0.820161 | 7.94E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene34683 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene34683 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene34683 | 0.82484 | 6.49E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene34683 | 0.838267 | 3.18E-57 | -1.69E-46 |
| MS.gene055909 | MS.gene34683 | 0.822968 | 1.78E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene34683 | 0.822716 | 2.04E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene34683 | 0.803325 | 3.68E-49 | -1.69E-46 |
| MS.gene056487 | MS.gene34683 | 0.806958 | 6.39E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene34683 | 0.832649 | 8.38E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene34683 | 0.834811 | 2.41E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene34683 | 0.818304 | 2.10E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene34683 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene34683 | 0.813815 | 2.11E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene34683 | 0.801745 | 7.79E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene34683 | 0.830178 | 3.40E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene34683 | 0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene34683 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene34683 | 0.805559 | 1.26E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene34683 | 0.815786 | 7.73E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34683.t1 | MTR_8g055860 | 97.065 | 477 | 12 | 2 | 1 | 475 | 15 | 491 | 0.0 | 951 |
| MS.gene34683.t1 | MTR_5g040340 | 47.544 | 509 | 181 | 22 | 3 | 475 | 7 | 465 | 2.83e-109 | 332 |
| MS.gene34683.t1 | MTR_7g088200 | 28.274 | 336 | 193 | 12 | 98 | 407 | 129 | 442 | 1.57e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34683.t1 | AT2G02950 | 36.854 | 445 | 165 | 21 | 34 | 443 | 48 | 411 | 1.56e-50 | 178 |
| MS.gene34683.t1 | AT1G14280 | 33.028 | 436 | 148 | 22 | 61 | 444 | 74 | 417 | 2.13e-36 | 140 |
Find 79 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGCTGTTAGAGTTTC+TGG | 0.087161 | 8.1:-46035549 | MS.gene34683:CDS |
| GCAGAAGAAATTGGAGTATT+TGG | 0.123215 | 8.1:-46036578 | MS.gene34683:CDS |
| GGTTTCAATGGTGTCCTTAT+TGG | 0.178083 | 8.1:+46035630 | None:intergenic |
| AGAAAATCACTTGAAGTATT+TGG | 0.207408 | 8.1:-46035993 | MS.gene34683:CDS |
| AATAACAAAACTTCTAAGTA+TGG | 0.262272 | 8.1:-46036245 | MS.gene34683:CDS |
| ATTCATTGACCAATGATAAA+AGG | 0.266711 | 8.1:-46035935 | MS.gene34683:CDS |
| GGAGTTTCTATGGTTGATAA+AGG | 0.283830 | 8.1:+46036622 | None:intergenic |
| GATGAAGAGGGGAGTTTCTA+TGG | 0.288069 | 8.1:+46036612 | None:intergenic |
| TTTCCAGGAGAGACAAATTA+TGG | 0.316379 | 8.1:-46035438 | MS.gene34683:CDS |
| CACTCTTTAAGAGTGCATTT+TGG | 0.317265 | 8.1:+46036402 | None:intergenic |
| TTCAAAAGCAAGAGAAGTTA+AGG | 0.319574 | 8.1:-46036106 | MS.gene34683:CDS |
| TCTCAAGTGGCAAGGTTTCC+AGG | 0.321527 | 8.1:-46035453 | MS.gene34683:CDS |
| CCTTCTTTGATATTCAAGTA+TGG | 0.329280 | 8.1:+46036689 | None:intergenic |
| TTGTTTCTCATAAGTTATAA+AGG | 0.342594 | 8.1:+46035521 | None:intergenic |
| GTGGAAAAGGCAGAAGAAAT+TGG | 0.345679 | 8.1:-46036587 | MS.gene34683:CDS |
| TGATAAAGGGATTGATTGTT+TGG | 0.345694 | 8.1:+46036636 | None:intergenic |
| GGTGTCTCCTTAGCGACTTT+TGG | 0.350009 | 8.1:+46035609 | None:intergenic |
| TCACTCGGCGCATAACAATT+CGG | 0.363432 | 8.1:+46035741 | None:intergenic |
| AGAAAGTACCAAGTTGAGTA+TGG | 0.364459 | 8.1:-46036461 | MS.gene34683:CDS |
| AAGCAATGAAAAGAATAGTT+TGG | 0.371539 | 8.1:-46036078 | MS.gene34683:CDS |
| TTATTGATCAATATTGGATT+TGG | 0.374889 | 8.1:+46035966 | None:intergenic |
| AGTGGAGTGAGAAATTCTAT+AGG | 0.378295 | 8.1:-46036383 | MS.gene34683:CDS |
| TGAAGCATGTGGCGAGTTAG+AGG | 0.378519 | 8.1:+46035365 | None:intergenic |
| AAATGTTTGAGTTTACAATA+AGG | 0.381327 | 8.1:-46035656 | MS.gene34683:CDS |
| CGGCGGCCTGGCATGTTGTT+GGG | 0.387012 | 8.1:-46035582 | MS.gene34683:CDS |
| AGACAAATTATGGTTCAAAA+AGG | 0.388140 | 8.1:-46035428 | MS.gene34683:CDS |
| GCGGCGGCCTGGCATGTTGT+TGG | 0.388150 | 8.1:-46035583 | MS.gene34683:CDS |
| TTACAATAAGGAGTCCAATA+AGG | 0.397883 | 8.1:-46035644 | MS.gene34683:CDS |
| CACTCGGCGCATAACAATTC+GGG | 0.399242 | 8.1:+46035742 | None:intergenic |
| TCTAAGTATGGTGCAGTTCA+AGG | 0.411902 | 8.1:-46036233 | MS.gene34683:CDS |
| GAACCATAATTTGTCTCTCC+TGG | 0.414611 | 8.1:+46035435 | None:intergenic |
| CCCTCTTCATCAAGTGGAAA+AGG | 0.418252 | 8.1:-46036600 | MS.gene34683:CDS |
| GTGGAGTGAGAAATTCTATA+GGG | 0.424894 | 8.1:-46036382 | MS.gene34683:CDS |
| GAGTTTCTATGGTTGATAAA+GGG | 0.435292 | 8.1:+46036623 | None:intergenic |
| TTATACCACACCACCATTGC+AGG | 0.447302 | 8.1:-46035388 | MS.gene34683:CDS |
| GAGACACCGAGGCGGCGGCC+TGG | 0.448368 | 8.1:-46035594 | MS.gene34683:CDS |
| AGGTACTTTGTAGAAGGTCT+TGG | 0.451368 | 8.1:+46036518 | None:intergenic |
| TCAAAAGCAAGAGAAGTTAA+GGG | 0.452923 | 8.1:-46036105 | MS.gene34683:CDS |
| TCTAGTAAGAAAATTGTTGT+TGG | 0.460554 | 8.1:+46035797 | None:intergenic |
| AACATGCCAGGCCGCCGCCT+CGG | 0.461235 | 8.1:+46035588 | None:intergenic |
| CAGAAACTCTAACAGCTTTG+TGG | 0.461380 | 8.1:+46035550 | None:intergenic |
| TTGTTTCCTTTCTCTGAGGA+AGG | 0.475302 | 8.1:+46036498 | None:intergenic |
| AGTAAGAAAATTGTTGTTGG+AGG | 0.489605 | 8.1:+46035800 | None:intergenic |
| TAAAACTGATTTCACTTGCA+TGG | 0.493162 | 8.1:+46036267 | None:intergenic |
| CATTCTATGCTTGCCTCACT+CGG | 0.500118 | 8.1:+46035726 | None:intergenic |
| GCGCATAACAATTCGGGCTA+AGG | 0.501346 | 8.1:+46035748 | None:intergenic |
| GTAAGAAAATTGTTGTTGGA+GGG | 0.511679 | 8.1:+46035801 | None:intergenic |
| AAAGTACCTTCCTCAGAGAA+AGG | 0.512613 | 8.1:-46036504 | MS.gene34683:CDS |
| TTGAGTAAGATTTCTGAGCT+AGG | 0.514673 | 8.1:+46036143 | None:intergenic |
| TTGCATCCCAACAACATGCC+AGG | 0.520880 | 8.1:+46035576 | None:intergenic |
| TGAGGAAGGTACTTTGTAGA+AGG | 0.524612 | 8.1:+46036512 | None:intergenic |
| GTTGACACAGAGCTAATACT+TGG | 0.526983 | 8.1:+46036434 | None:intergenic |
| CCATACTTGAATATCAAAGA+AGG | 0.535861 | 8.1:-46036689 | MS.gene34683:CDS |
| GTGAGAAATTCTATAGGGAA+TGG | 0.537374 | 8.1:-46036377 | MS.gene34683:CDS |
| TTTGAGATTGAGAGTCTCAA+AGG | 0.541185 | 8.1:-46035828 | MS.gene34683:CDS |
| AAACTCCCCTCTTCATCAAG+TGG | 0.542981 | 8.1:-46036606 | MS.gene34683:CDS |
| CTAAGGAGACACCGAGGCGG+CGG | 0.545196 | 8.1:-46035599 | MS.gene34683:CDS |
| CGAGTGAGGCAAGCATAGAA+TGG | 0.547758 | 8.1:-46035725 | MS.gene34683:CDS |
| AGAAAACAGCATCATGGAGG+TGG | 0.557647 | 8.1:+46036714 | None:intergenic |
| TTGGAGTTCCATACTCAACT+TGG | 0.566689 | 8.1:+46036453 | None:intergenic |
| ATGGAGAGAAAACAGCATCA+TGG | 0.576053 | 8.1:+46036708 | None:intergenic |
| AAACAATACTAATTCTCAAG+TGG | 0.581231 | 8.1:-46035466 | MS.gene34683:CDS |
| ATACTAATTCTCAAGTGGCA+AGG | 0.582567 | 8.1:-46035461 | MS.gene34683:CDS |
| AAGCAAGAGAAGTTAAGGGT+AGG | 0.593464 | 8.1:-46036101 | MS.gene34683:CDS |
| CAAAATGCACTCTTAAAGAG+TGG | 0.600036 | 8.1:-46036401 | MS.gene34683:CDS |
| ATTGAAACCAAAAGTCGCTA+AGG | 0.601572 | 8.1:-46035616 | MS.gene34683:CDS |
| TATAGTAACTTTGAAGCATG+TGG | 0.603295 | 8.1:+46035354 | None:intergenic |
| GAGTTAGAGGCCTGCAATGG+TGG | 0.606643 | 8.1:+46035378 | None:intergenic |
| GTATTAGCTCTGTGTCAACA+TGG | 0.612942 | 8.1:-46036430 | MS.gene34683:CDS |
| TCCTCAGAGAAAGGAAACAA+TGG | 0.613500 | 8.1:-46036495 | MS.gene34683:CDS |
| AAAAGGCATGGACAACAACA+TGG | 0.618653 | 8.1:-46035411 | MS.gene34683:CDS |
| GAATTGTTATGCGCCGAGTG+AGG | 0.631139 | 8.1:-46035739 | MS.gene34683:CDS |
| GCCATTGTTTCCTTTCTCTG+AGG | 0.638901 | 8.1:+46036494 | None:intergenic |
| AGAGGCCTGCAATGGTGGTG+TGG | 0.651196 | 8.1:+46035383 | None:intergenic |
| GGCGAGTTAGAGGCCTGCAA+TGG | 0.698179 | 8.1:+46035375 | None:intergenic |
| GGCAAGCATAGAATGGAGTG+TGG | 0.714785 | 8.1:-46035718 | MS.gene34683:CDS |
| GAGAGAAAACAGCATCATGG+AGG | 0.723218 | 8.1:+46036711 | None:intergenic |
| TCGCTAAGGAGACACCGAGG+CGG | 0.748620 | 8.1:-46035602 | MS.gene34683:CDS |
| AAGTCGCTAAGGAGACACCG+AGG | 0.807856 | 8.1:-46035605 | MS.gene34683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCAATTTCTTTCATTTT+TGG | + | chr8.1:46036199-46036218 | None:intergenic | 15.0% |
| !! | AATAACAAAACTTCTAAGTA+TGG | - | chr8.1:46035854-46035873 | MS.gene34683:CDS | 20.0% |
| !! | TTATTGATCAATATTGGATT+TGG | + | chr8.1:46036136-46036155 | None:intergenic | 20.0% |
| !!! | AAATATCAACCTTTTATCAT+TGG | + | chr8.1:46036176-46036195 | None:intergenic | 20.0% |
| !!! | AAATGTTTGAGTTTACAATA+AGG | - | chr8.1:46036443-46036462 | MS.gene34683:CDS | 20.0% |
| !!! | CTTTTGTTATTGATCAATAT+TGG | + | chr8.1:46036142-46036161 | None:intergenic | 20.0% |
| !!! | TTGTTTCTCATAAGTTATAA+AGG | + | chr8.1:46036581-46036600 | None:intergenic | 20.0% |
| ! | AAACAATACTAATTCTCAAG+TGG | - | chr8.1:46036633-46036652 | MS.gene34683:CDS | 25.0% |
| ! | AAGCAATGAAAAGAATAGTT+TGG | - | chr8.1:46036021-46036040 | MS.gene34683:CDS | 25.0% |
| ! | AGACAAATTATGGTTCAAAA+AGG | - | chr8.1:46036671-46036690 | MS.gene34683:CDS | 25.0% |
| ! | ATTCATTGACCAATGATAAA+AGG | - | chr8.1:46036164-46036183 | MS.gene34683:CDS | 25.0% |
| ! | GGAAAGTTTATAGCAAAAAT+TGG | - | chr8.1:46035431-46035450 | MS.gene34683:CDS | 25.0% |
| ! | TCTAGTAAGAAAATTGTTGT+TGG | + | chr8.1:46036305-46036324 | None:intergenic | 25.0% |
| !! | AATACTTCAAGTGATTTTCT+TGG | + | chr8.1:46036106-46036125 | None:intergenic | 25.0% |
| !! | AGAAAATCACTTGAAGTATT+TGG | - | chr8.1:46036106-46036125 | MS.gene34683:CDS | 25.0% |
| !!! | TTGTTTCTGCTACTAATTTT+TGG | + | chr8.1:46036613-46036632 | None:intergenic | 25.0% |
| AATTATGGTTCAAAAAGGCA+TGG | - | chr8.1:46036676-46036695 | MS.gene34683:CDS | 30.0% | |
| CCATACTTGAATATCAAAGA+AGG | - | chr8.1:46035410-46035429 | MS.gene34683:CDS | 30.0% | |
| CCTTCTTTGATATTCAAGTA+TGG | + | chr8.1:46035413-46035432 | None:intergenic | 30.0% | |
| GCTGAAAAATACTTCAATAG+AGG | - | chr8.1:46035545-46035564 | MS.gene34683:CDS | 30.0% | |
| TCAAAAGCAAGAGAAGTTAA+GGG | - | chr8.1:46035994-46036013 | MS.gene34683:CDS | 30.0% | |
| TGATAAAGGGATTGATTGTT+TGG | + | chr8.1:46035466-46035485 | None:intergenic | 30.0% | |
| TTACAATAAGGAGTCCAATA+AGG | - | chr8.1:46036455-46036474 | MS.gene34683:CDS | 30.0% | |
| TTCAAAAGCAAGAGAAGTTA+AGG | - | chr8.1:46035993-46036012 | MS.gene34683:CDS | 30.0% | |
| ! | AGTAAGAAAATTGTTGTTGG+AGG | + | chr8.1:46036302-46036321 | None:intergenic | 30.0% |
| ! | GTAAGAAAATTGTTGTTGGA+GGG | + | chr8.1:46036301-46036320 | None:intergenic | 30.0% |
| ! | TAAAACTGATTTCACTTGCA+TGG | + | chr8.1:46035835-46035854 | None:intergenic | 30.0% |
| !! | CCAAAAAAAGTGTTCAATCT+TGG | - | chr8.1:46035899-46035918 | MS.gene34683:CDS | 30.0% |
| !! | GAGTTTCTATGGTTGATAAA+GGG | + | chr8.1:46035479-46035498 | None:intergenic | 30.0% |
| !! | TATAGTAACTTTGAAGCATG+TGG | + | chr8.1:46036748-46036767 | None:intergenic | 30.0% |
| !!! | CCAAGATTGAACACTTTTTT+TGG | + | chr8.1:46035902-46035921 | None:intergenic | 30.0% |
| AATGGCAAAGAAAAAGAGCA+TGG | - | chr8.1:46035740-46035759 | MS.gene34683:CDS | 35.0% | |
| AGTGGAGTGAGAAATTCTAT+AGG | - | chr8.1:46035716-46035735 | MS.gene34683:CDS | 35.0% | |
| ATACTAATTCTCAAGTGGCA+AGG | - | chr8.1:46036638-46036657 | MS.gene34683:CDS | 35.0% | |
| ATTGAAACCAAAAGTCGCTA+AGG | - | chr8.1:46036483-46036502 | MS.gene34683:CDS | 35.0% | |
| CAAAATGCACTCTTAAAGAG+TGG | - | chr8.1:46035698-46035717 | MS.gene34683:CDS | 35.0% | |
| GTGAGAAATTCTATAGGGAA+TGG | - | chr8.1:46035722-46035741 | MS.gene34683:CDS | 35.0% | |
| GTGGAGTGAGAAATTCTATA+GGG | - | chr8.1:46035717-46035736 | MS.gene34683:CDS | 35.0% | |
| TTGAGTAAGATTTCTGAGCT+AGG | + | chr8.1:46035959-46035978 | None:intergenic | 35.0% | |
| TTTCCAGGAGAGACAAATTA+TGG | - | chr8.1:46036661-46036680 | MS.gene34683:CDS | 35.0% | |
| ! | GCAGAAGAAATTGGAGTATT+TGG | - | chr8.1:46035521-46035540 | MS.gene34683:CDS | 35.0% |
| ! | GGTGTCTTTTCATCATCTAA+TGG | + | chr8.1:46036085-46036104 | None:intergenic | 35.0% |
| ! | TTTGAGATTGAGAGTCTCAA+AGG | - | chr8.1:46036271-46036290 | MS.gene34683:CDS | 35.0% |
| !! | AGAAAGTACCAAGTTGAGTA+TGG | - | chr8.1:46035638-46035657 | MS.gene34683:CDS | 35.0% |
| !! | CACTCTTTAAGAGTGCATTT+TGG | + | chr8.1:46035700-46035719 | None:intergenic | 35.0% |
| !! | GGAGTTTCTATGGTTGATAA+AGG | + | chr8.1:46035480-46035499 | None:intergenic | 35.0% |
| !!! | TTAGCGACTTTTGGTTTCAA+TGG | + | chr8.1:46036484-46036503 | None:intergenic | 35.0% |
| AAGCAAGAGAAGTTAAGGGT+AGG | - | chr8.1:46035998-46036017 | MS.gene34683:CDS | 40.0% | |
| AGGTACTTTGTAGAAGGTCT+TGG | + | chr8.1:46035584-46035603 | None:intergenic | 40.0% | |
| ATGGAGAGAAAACAGCATCA+TGG | + | chr8.1:46035394-46035413 | None:intergenic | 40.0% | |
| CACAAAGCTGTTAGAGTTTC+TGG | - | chr8.1:46036550-46036569 | MS.gene34683:CDS | 40.0% | |
| CAGAAACTCTAACAGCTTTG+TGG | + | chr8.1:46036552-46036571 | None:intergenic | 40.0% | |
| GGTTTCAATGGTGTCCTTAT+TGG | + | chr8.1:46036472-46036491 | None:intergenic | 40.0% | |
| GTGGAAAAGGCAGAAGAAAT+TGG | - | chr8.1:46035512-46035531 | MS.gene34683:CDS | 40.0% | |
| GTTGACACAGAGCTAATACT+TGG | + | chr8.1:46035668-46035687 | None:intergenic | 40.0% | |
| TCCTCAGAGAAAGGAAACAA+TGG | - | chr8.1:46035604-46035623 | MS.gene34683:CDS | 40.0% | |
| TCTAAGTATGGTGCAGTTCA+AGG | - | chr8.1:46035866-46035885 | MS.gene34683:CDS | 40.0% | |
| TTGGAGTTCCATACTCAACT+TGG | + | chr8.1:46035649-46035668 | None:intergenic | 40.0% | |
| ! | AAAAGGCATGGACAACAACA+TGG | - | chr8.1:46036688-46036707 | MS.gene34683:CDS | 40.0% |
| ! | AAAGTACCTTCCTCAGAGAA+AGG | - | chr8.1:46035595-46035614 | MS.gene34683:CDS | 40.0% |
| ! | CCTTTTCCACTTGATGAAGA+GGG | + | chr8.1:46035502-46035521 | None:intergenic | 40.0% |
| ! | CTTTTCCACTTGATGAAGAG+GGG | + | chr8.1:46035501-46035520 | None:intergenic | 40.0% |
| ! | GAACCATAATTTGTCTCTCC+TGG | + | chr8.1:46036667-46036686 | None:intergenic | 40.0% |
| ! | TTGTTTCCTTTCTCTGAGGA+AGG | + | chr8.1:46035604-46035623 | None:intergenic | 40.0% |
| !! | GTATTAGCTCTGTGTCAACA+TGG | - | chr8.1:46035669-46035688 | MS.gene34683:CDS | 40.0% |
| !! | TGAGGAAGGTACTTTGTAGA+AGG | + | chr8.1:46035590-46035609 | None:intergenic | 40.0% |
| AAACTCCCCTCTTCATCAAG+TGG | - | chr8.1:46035493-46035512 | MS.gene34683:CDS | 45.0% | |
| AGAAAACAGCATCATGGAGG+TGG | + | chr8.1:46035388-46035407 | None:intergenic | 45.0% | |
| CATTCTATGCTTGCCTCACT+CGG | + | chr8.1:46036376-46036395 | None:intergenic | 45.0% | |
| CCCTCTTCATCAAGTGGAAA+AGG | - | chr8.1:46035499-46035518 | MS.gene34683:CDS | 45.0% | |
| GAGAGAAAACAGCATCATGG+AGG | + | chr8.1:46035391-46035410 | None:intergenic | 45.0% | |
| GATGAAGAGGGGAGTTTCTA+TGG | + | chr8.1:46035490-46035509 | None:intergenic | 45.0% | |
| GCCATTGTTTCCTTTCTCTG+AGG | + | chr8.1:46035608-46035627 | None:intergenic | 45.0% | |
| TCACTCGGCGCATAACAATT+CGG | + | chr8.1:46036361-46036380 | None:intergenic | 45.0% | |
| TTATACCACACCACCATTGC+AGG | - | chr8.1:46036711-46036730 | MS.gene34683:CDS | 45.0% | |
| ! | GCCTTTTCCACTTGATGAAG+AGG | + | chr8.1:46035503-46035522 | None:intergenic | 45.0% |
| CACTCGGCGCATAACAATTC+GGG | + | chr8.1:46036360-46036379 | None:intergenic | 50.0% | |
| CGAGTGAGGCAAGCATAGAA+TGG | - | chr8.1:46036374-46036393 | MS.gene34683:CDS | 50.0% | |
| GAATTGTTATGCGCCGAGTG+AGG | - | chr8.1:46036360-46036379 | MS.gene34683:CDS | 50.0% | |
| GCGCATAACAATTCGGGCTA+AGG | + | chr8.1:46036354-46036373 | None:intergenic | 50.0% | |
| GGCAAGCATAGAATGGAGTG+TGG | - | chr8.1:46036381-46036400 | MS.gene34683:CDS | 50.0% | |
| TCTCAAGTGGCAAGGTTTCC+AGG | - | chr8.1:46036646-46036665 | MS.gene34683:CDS | 50.0% | |
| TGAAGCATGTGGCGAGTTAG+AGG | + | chr8.1:46036737-46036756 | None:intergenic | 50.0% | |
| TTGCATCCCAACAACATGCC+AGG | + | chr8.1:46036526-46036545 | None:intergenic | 50.0% | |
| ! | GGTGTCTCCTTAGCGACTTT+TGG | + | chr8.1:46036493-46036512 | None:intergenic | 50.0% |
| AAGTCGCTAAGGAGACACCG+AGG | - | chr8.1:46036494-46036513 | MS.gene34683:CDS | 55.0% | |
| GAGTTAGAGGCCTGCAATGG+TGG | + | chr8.1:46036724-46036743 | None:intergenic | 55.0% | |
| GGCGAGTTAGAGGCCTGCAA+TGG | + | chr8.1:46036727-46036746 | None:intergenic | 60.0% | |
| TCGCTAAGGAGACACCGAGG+CGG | - | chr8.1:46036497-46036516 | MS.gene34683:CDS | 60.0% | |
| ! | AGAGGCCTGCAATGGTGGTG+TGG | + | chr8.1:46036719-46036738 | None:intergenic | 60.0% |
| CGGCGGCCTGGCATGTTGTT+GGG | - | chr8.1:46036517-46036536 | MS.gene34683:CDS | 65.0% | |
| CTAAGGAGACACCGAGGCGG+CGG | - | chr8.1:46036500-46036519 | MS.gene34683:CDS | 65.0% | |
| AACATGCCAGGCCGCCGCCT+CGG | + | chr8.1:46036514-46036533 | None:intergenic | 70.0% | |
| GCGGCGGCCTGGCATGTTGT+TGG | - | chr8.1:46036516-46036535 | MS.gene34683:CDS | 70.0% | |
| ! | GAGACACCGAGGCGGCGGCC+TGG | - | chr8.1:46036505-46036524 | MS.gene34683:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 46035347 | 46036774 | 46035347 | ID=MS.gene34683 |
| chr8.1 | mRNA | 46035347 | 46036774 | 46035347 | ID=MS.gene34683.t1;Parent=MS.gene34683 |
| chr8.1 | exon | 46035347 | 46036774 | 46035347 | ID=MS.gene34683.t1.exon1;Parent=MS.gene34683.t1 |
| chr8.1 | CDS | 46035347 | 46036774 | 46035347 | ID=cds.MS.gene34683.t1;Parent=MS.gene34683.t1 |
| Gene Sequence |
| Protein sequence |
