AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35265


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35265.t1 MTR_5g029260 97.351 302 7 1 1 301 1 302 0.0 587
MS.gene35265.t1 MTR_3g105660 47.706 218 108 3 67 283 55 267 1.03e-59 192
MS.gene35265.t1 MTR_6g005650 91.837 49 4 0 117 165 138 186 5.53e-22 94.0
MS.gene35265.t1 MTR_7g405800 93.617 47 3 0 119 165 73 119 5.99e-22 92.4
MS.gene35265.t1 MTR_6g009130 62.500 56 21 0 118 173 124 179 7.61e-16 74.7
MS.gene35265.t1 MTR_6g466340 87.234 47 6 0 121 167 9 55 1.28e-14 70.5
MS.gene35265.t1 MTR_6g464960 87.234 47 6 0 121 167 9 55 3.13e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35265.t1 AT1G32220 66.225 302 93 3 1 300 1 295 4.33e-147 415
MS.gene35265.t1 AT5G10730 45.494 233 120 4 52 283 42 268 3.59e-55 181
MS.gene35265.t1 AT5G15910 47.005 217 110 3 68 283 42 254 4.90e-51 169
MS.gene35265.t1 AT5G15910 46.759 216 110 3 69 283 2 213 7.02e-51 167

Find 72 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGAGATCAATATGAATT+TGG 0.138307 5.4:-19517961 None:intergenic
GATCAGGTTACTTGGATTTC+AGG 0.214857 5.4:+19516931 MS.gene35265:CDS
TCCTGCTTCTGATCTACTTT+TGG 0.243895 5.4:+19518764 MS.gene35265:CDS
GTGACCTGAACTAGGGAATT+TGG 0.262436 5.4:-19518063 None:intergenic
TTAAGACCAGGCTTCATATA+TGG 0.287107 5.4:+19518636 MS.gene35265:CDS
GTCTCAACCCTCGGAGGTTT+TGG 0.292716 5.4:+19517276 MS.gene35265:CDS
GAAGCAGGAAGTGCGCTTAA+TGG 0.325078 5.4:-19518750 None:intergenic
AGATTCCCTTGGATTTAGTT+GGG 0.330713 5.4:+19518682 MS.gene35265:CDS
CATGGATAGATCAGGTTACT+TGG 0.349750 5.4:+19516923 MS.gene35265:CDS
GTAAATGCTGCAAAGGAATA+TGG 0.364198 5.4:+19517348 MS.gene35265:CDS
GTTACAGATGATGACTTCTT+TGG 0.364428 5.4:+19518834 MS.gene35265:CDS
CTATCCAAATTCCCTAGTTC+AGG 0.367351 5.4:+19518059 MS.gene35265:CDS
AACTGGGACGAAGTACTTCC+TGG 0.372764 5.4:+19517240 MS.gene35265:CDS
GAGATTCCCTTGGATTTAGT+TGG 0.373207 5.4:+19518681 MS.gene35265:CDS
TAATATGTAGATTGTAGTCT+TGG 0.384812 5.4:+19516697 MS.gene35265:intron
TTGGGAGGCAATGGGTTTGT+TGG 0.385926 5.4:+19516716 MS.gene35265:CDS
ACTGAGATCAATATGAATTT+GGG 0.389375 5.4:-19517960 None:intergenic
GCTTATGACTTCTATGCCCT+TGG 0.419174 5.4:-19516765 None:intergenic
CTTTCATCGGGGTACTTCAC+AGG 0.421460 5.4:+19518011 MS.gene35265:CDS
TAGAAGTCATAAGCTTAAAC+AGG 0.429364 5.4:+19516774 MS.gene35265:CDS
TAAGACCAGGCTTCATATAT+GGG 0.441094 5.4:+19518637 MS.gene35265:CDS
GATCAAGGAAGCTGCTGATA+AGG 0.445846 5.4:+19518875 MS.gene35265:CDS
GCAGTTAGCTGCAGTTATGC+AGG 0.452311 5.4:+19516295 MS.gene35265:CDS
CTCAGATTCATGGATAGATC+AGG 0.452914 5.4:+19516915 MS.gene35265:CDS
ATTGTAGTCTTGGGAGGCAA+TGG 0.455853 5.4:+19516707 MS.gene35265:CDS
GTCCTGCTTACTCAGATTCA+TGG 0.463208 5.4:+19516905 MS.gene35265:CDS
AATATGTAGATTGTAGTCTT+GGG 0.479908 5.4:+19516698 MS.gene35265:intron
AGCTGCAGTTATGCAGGAGC+AGG 0.483868 5.4:+19516301 MS.gene35265:CDS
ATCAGCCACAACATCTATAG+TGG 0.490070 5.4:-19516347 None:intergenic
GAGACTACTGCAGTAGCTCC+AGG 0.492058 5.4:-19517258 None:intergenic
ATAGAATAGTGACCTGAACT+AGG 0.499011 5.4:-19518071 None:intergenic
CAGTGTTGATGATGTTGCAT+TGG 0.500479 5.4:+19518797 MS.gene35265:CDS
AGGAAGCTGCTGATAAGGTA+AGG 0.501695 5.4:+19518880 MS.gene35265:CDS
TTGTAGTCTTGGGAGGCAAT+GGG 0.505552 5.4:+19516708 MS.gene35265:CDS
ATGAGACGAGGAGAAACAGC+AGG 0.508541 5.4:-19515581 None:intergenic
GGCTGATGTTATAAGCGAAA+AGG 0.514531 5.4:+19516363 MS.gene35265:CDS
GTTGCATTGGCAGTTATCAA+TGG 0.527638 5.4:+19518810 MS.gene35265:CDS
GAACAAATGAGAAAGATTAA+CGG 0.530717 5.4:+19517306 MS.gene35265:CDS
GTTTACAATTGATCAGATCA+AGG 0.531543 5.4:+19518860 MS.gene35265:CDS
ATCCATGAATCTGAGTAAGC+AGG 0.531810 5.4:-19516907 None:intergenic
GGGTCGTTTGAGAGAGAAAA+CGG 0.535571 5.4:-19515609 None:intergenic
GATTCCCTTGGATTTAGTTG+GGG 0.537599 5.4:+19518683 MS.gene35265:CDS
GCCAAAAGTAGATCAGAAGC+AGG 0.539884 5.4:-19518765 None:intergenic
ATGCAAGGCAGCAGTATCCA+AGG 0.543594 5.4:+19516748 MS.gene35265:CDS
TCAGGTATTGTCTTAAGACC+AGG 0.551242 5.4:+19518624 MS.gene35265:intron
AAAGAGAAAAGCAGAATCTG+AGG 0.554082 5.4:+19518034 MS.gene35265:CDS
GGGCTCCCCAACTAAATCCA+AGG 0.564003 5.4:-19518688 None:intergenic
GCAACATCATCAACACTGAC+AGG 0.569664 5.4:-19518792 None:intergenic
TATGGGAAAAGAAGAGTGGA+TGG 0.584509 5.4:+19518654 MS.gene35265:CDS
GGTAGGTGGAGTGTGAGTGA+AGG 0.586620 5.4:-19515630 None:intergenic
GTAGGTGGAGTGTGAGTGAA+GGG 0.586862 5.4:-19515629 None:intergenic
TGTTGGTTCTGCGATATGCA+AGG 0.592323 5.4:+19516733 MS.gene35265:CDS
AGTTATGCAGGAGCAGGTGT+TGG 0.603055 5.4:+19516307 MS.gene35265:CDS
GGCTCCCCAACTAAATCCAA+GGG 0.605980 5.4:-19518687 None:intergenic
TAGAATAGTGACCTGAACTA+GGG 0.608853 5.4:-19518070 None:intergenic
CTCGCTACCAAAACCTCCGA+GGG 0.612537 5.4:-19517283 None:intergenic
TAACGGCGAGGCTAATGTTG+TGG 0.613394 5.4:+19517323 MS.gene35265:CDS
CATATATGGGAAAAGAAGAG+TGG 0.616736 5.4:+19518650 MS.gene35265:CDS
ATGTAGATTGTAGTCTTGGG+AGG 0.624281 5.4:+19516701 MS.gene35265:intron
ACTGCAGTAGTCTCAACCCT+CGG 0.629761 5.4:+19517267 MS.gene35265:CDS
GGAAGCTGCTGATAAGGTAA+GGG 0.634099 5.4:+19518881 MS.gene35265:CDS
GACGTCCACTATAGATGTTG+TGG 0.638034 5.4:+19516342 MS.gene35265:CDS
CCTCGCTACCAAAACCTCCG+AGG 0.646053 5.4:-19517284 None:intergenic
TGTGGCTGTAAATGCTGCAA+AGG 0.647873 5.4:+19517341 MS.gene35265:CDS
TGCAAGGCAGCAGTATCCAA+GGG 0.660059 5.4:+19516749 MS.gene35265:CDS
CGTTTGAGAGAGAAAACGGT+GGG 0.661357 5.4:-19515605 None:intergenic
ACATCATCAACACTGACAGG+TGG 0.667644 5.4:-19518789 None:intergenic
AAAACGGTGGGAATGAGACG+AGG 0.678492 5.4:-19515593 None:intergenic
TGAGACGAGGAGAAACAGCA+GGG 0.692443 5.4:-19515580 None:intergenic
AATGAGAAAGATTAACGGCG+AGG 0.694239 5.4:+19517311 MS.gene35265:CDS
GCAGTAGTCTCAACCCTCGG+AGG 0.734128 5.4:+19517270 MS.gene35265:CDS
TCGTTTGAGAGAGAAAACGG+TGG 0.746736 5.4:-19515606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTATTTATGGAAT+CGG + chr5.4:19517875-19517894 MS.gene35265:intron 10.0%
!!! AATGAAAAGTATAAAAAAAA+TGG - chr5.4:19516411-19516430 None:intergenic 10.0%
!!! ATGAAAAGTATAAAAAAAAT+GGG - chr5.4:19516410-19516429 None:intergenic 10.0%
!!! TTGATTATTTTTTCATTTTT+TGG + chr5.4:19515918-19515937 MS.gene35265:intron 10.0%
!!! TTTTTATACTTTTCATTTTT+AGG + chr5.4:19516414-19516433 MS.gene35265:intron 10.0%
!!! ATTTTTTCATTTTTTGGATT+TGG + chr5.4:19515924-19515943 MS.gene35265:intron 15.0%
!!! TTTTTTCATTTCTAAATTCT+GGG + chr5.4:19515711-19515730 MS.gene35265:intron 15.0%
!! AACATAGTGAATTAATTGAT+AGG + chr5.4:19516570-19516589 MS.gene35265:intron 20.0%
!! ACTAAAATGTAAAGAAACAT+TGG - chr5.4:19517762-19517781 None:intergenic 20.0%
!! ATAAGTACTTATCATATAAG+TGG - chr5.4:19517682-19517701 None:intergenic 20.0%
!! ATAATATAGTCAAACATGAA+AGG - chr5.4:19517433-19517452 None:intergenic 20.0%
!! CATATGAATAAATTATAAGC+TGG - chr5.4:19518430-19518449 None:intergenic 20.0%
!! TAGTCCAAAAATAATCATTT+CGG - chr5.4:19518196-19518215 None:intergenic 20.0%
!! TTAACATAAAACAACCATAA+TGG - chr5.4:19516037-19516056 None:intergenic 20.0%
!!! AAAATTCAACTTTTCCATTA+TGG + chr5.4:19516020-19516039 MS.gene35265:intron 20.0%
!!! AAATTTTAAGTCTTGCTTTA+TGG - chr5.4:19517485-19517504 None:intergenic 20.0%
!!! AACTGAAATTTTGTTTTAAC+AGG + chr5.4:19516875-19516894 MS.gene35265:intron 20.0%
!!! AGATGTTTTTTATGTAAACT+GGG + chr5.4:19517224-19517243 MS.gene35265:CDS 20.0%
!!! ATGTTTCTTTACATTTTAGT+TGG + chr5.4:19517762-19517781 MS.gene35265:intron 20.0%
!!! CTTTTTTCATTTCTAAATTC+TGG + chr5.4:19515710-19515729 MS.gene35265:intron 20.0%
!!! TATCTTACTTTTTTTGTACT+CGG - chr5.4:19517022-19517041 None:intergenic 20.0%
!!! TGGTGCTTTAAATTTATTTA+TGG + chr5.4:19517869-19517888 MS.gene35265:intron 20.0%
!!! TTTAGTTTTAAGATCATGAA+AGG - chr5.4:19518098-19518117 None:intergenic 20.0%
!!! TTTATCTCTTGTTATAGAAA+TGG + chr5.4:19518468-19518487 MS.gene35265:intron 20.0%
! AAATGTAAAGAAACATTGGA+AGG - chr5.4:19517758-19517777 None:intergenic 25.0%
! AACTGAGATCAATATGAATT+TGG - chr5.4:19517964-19517983 None:intergenic 25.0%
! AATATGTAGATTGTAGTCTT+GGG + chr5.4:19516698-19516717 MS.gene35265:intron 25.0%
! ACTGAGATCAATATGAATTT+GGG - chr5.4:19517963-19517982 None:intergenic 25.0%
! ATTGTCTTGTGATTAAAGAT+TGG + chr5.4:19516209-19516228 MS.gene35265:intron 25.0%
! CAATAGTAGAAAACAAACTT+GGG - chr5.4:19517058-19517077 None:intergenic 25.0%
! CTAATAAACTAAACATGTCT+AGG + chr5.4:19516968-19516987 MS.gene35265:intron 25.0%
! GAACAAATGAGAAAGATTAA+CGG + chr5.4:19517306-19517325 MS.gene35265:CDS 25.0%
! TAATATGTAGATTGTAGTCT+TGG + chr5.4:19516697-19516716 MS.gene35265:intron 25.0%
! TAATTAAGCACTTATCACAT+AGG - chr5.4:19518530-19518549 None:intergenic 25.0%
! TCAAATAAGTTAATGCAAAC+AGG - chr5.4:19518286-19518305 None:intergenic 25.0%
! TGAATACACAAAAACAAAAG+AGG - chr5.4:19516856-19516875 None:intergenic 25.0%
! TTGTCTTGTGATTAAAGATT+GGG + chr5.4:19516210-19516229 MS.gene35265:intron 25.0%
!! AGATGAATATCATGCTTTTA+CGG + chr5.4:19518260-19518279 MS.gene35265:intron 25.0%
!! CTAGACATGTTTAGTTTATT+AGG - chr5.4:19516970-19516989 None:intergenic 25.0%
!! TTTGCCGAAATGATTATTTT+TGG + chr5.4:19518189-19518208 MS.gene35265:intron 25.0%
!!! AAATTTTGTTTTAACAGGTC+AGG + chr5.4:19516880-19516899 MS.gene35265:intron 25.0%
!!! ATCTCAGTAATCTTTTTTTC+TGG + chr5.4:19517164-19517183 MS.gene35265:intron 25.0%
!!! ATTTGAGTTTTAGTGAGTAA+TGG + chr5.4:19515875-19515894 MS.gene35265:intron 25.0%
!!! GAGATGTTTTTTATGTAAAC+TGG + chr5.4:19517223-19517242 MS.gene35265:CDS 25.0%
!!! TGATTTTAGAATTCTTTCAG+CGG - chr5.4:19518712-19518731 None:intergenic 25.0%
AAGTTGAATGCTTACAGATA+TGG + chr5.4:19517626-19517645 MS.gene35265:intron 30.0%
AATCTCACAAATGCTTATAC+CGG - chr5.4:19518318-19518337 None:intergenic 30.0%
AGATTATTTGAGAGAGCTTA+TGG + chr5.4:19518333-19518352 MS.gene35265:intron 30.0%
AGGGTATGAATGAAAGTTTA+GGG - chr5.4:19517461-19517480 None:intergenic 30.0%
CAAAATAATGCTCAATGAGA+TGG - chr5.4:19517378-19517397 None:intergenic 30.0%
CCAATAGTAGAAAACAAACT+TGG - chr5.4:19517059-19517078 None:intergenic 30.0%
CCTCAGTAAAACAAATTTCA+TGG - chr5.4:19515810-19515829 None:intergenic 30.0%
GTTTACAATTGATCAGATCA+AGG + chr5.4:19518860-19518879 MS.gene35265:CDS 30.0%
TAGAAGTCATAAGCTTAAAC+AGG + chr5.4:19516774-19516793 MS.gene35265:CDS 30.0%
TGTATATATACGCACAGAAA+TGG + chr5.4:19517791-19517810 MS.gene35265:intron 30.0%
TTAAGTCTTGCTTTATGGAA+GGG - chr5.4:19517480-19517499 None:intergenic 30.0%
TTAGTAATCCATGGATCATA+GGG + chr5.4:19516483-19516502 MS.gene35265:intron 30.0%
TTCCATCAACTGTCATATAT+AGG + chr5.4:19517551-19517570 MS.gene35265:intron 30.0%
TTTAAGTCTTGCTTTATGGA+AGG - chr5.4:19517481-19517500 None:intergenic 30.0%
! AAGGGTATGAATGAAAGTTT+AGG - chr5.4:19517462-19517481 None:intergenic 30.0%
! ACTTATTTGAGACTATCTAC+CGG + chr5.4:19518296-19518315 MS.gene35265:intron 30.0%
! CACAAATTTGTTTACACCAT+TGG - chr5.4:19517117-19517136 None:intergenic 30.0%
!! ACCATCGTTTTTACTTTCAT+CGG + chr5.4:19517998-19518017 MS.gene35265:CDS 30.0%
!! ATGCTTATGGCTTTATATGA+AGG + chr5.4:19517818-19517837 MS.gene35265:intron 30.0%
!! ATGTTTGGGATATTCTTTTG+AGG + chr5.4:19517846-19517865 MS.gene35265:intron 30.0%
!! CCAAGTTTGTTTTCTACTAT+TGG + chr5.4:19517056-19517075 MS.gene35265:intron 30.0%
!! GTTGTTATGTGCTTTTTACA+AGG + chr5.4:19517512-19517531 MS.gene35265:intron 30.0%
!!! CCATGAAATTTGTTTTACTG+AGG + chr5.4:19515807-19515826 MS.gene35265:intron 30.0%
!!! GATTTTAGAATTCTTTCAGC+GGG - chr5.4:19518711-19518730 None:intergenic 30.0%
!!! TGATTTTTGAAATGCAAGGT+AGG - chr5.4:19515650-19515669 None:intergenic 30.0%
!!! TTCTTTACATTTTAGTTGGC+TGG + chr5.4:19517766-19517785 MS.gene35265:intron 30.0%
AAAAACATCTCCTGCACATT+AGG - chr5.4:19517214-19517233 None:intergenic 35.0%
AAAGAGAAAAGCAGAATCTG+AGG + chr5.4:19518034-19518053 MS.gene35265:CDS 35.0%
AAATGACTCATTTGCAGAAC+AGG - chr5.4:19518172-19518191 None:intergenic 35.0%
AAGACAATACCTGAAGATGT+TGG - chr5.4:19518618-19518637 None:intergenic 35.0%
AATGACTCATTTGCAGAACA+GGG - chr5.4:19518171-19518190 None:intergenic 35.0%
AATGCTTACAGATATGGAGA+TGG + chr5.4:19517632-19517651 MS.gene35265:intron 35.0%
ACACAAAAACAAAAGAGGCA+CGG - chr5.4:19516851-19516870 None:intergenic 35.0%
ACTAAACATGTCTAGGTCTA+TGG + chr5.4:19516975-19516994 MS.gene35265:intron 35.0%
AGACAATACCTGAAGATGTT+GGG - chr5.4:19518617-19518636 None:intergenic 35.0%
AGATTCCCTTGGATTTAGTT+GGG + chr5.4:19518682-19518701 MS.gene35265:CDS 35.0%
AGTAAGCTAAAAACAGCTCA+TGG - chr5.4:19518377-19518396 None:intergenic 35.0%
AGTCTGATAAACAAAGACCT+GGG + chr5.4:19518128-19518147 MS.gene35265:intron 35.0%
ATAGAATAGTGACCTGAACT+AGG - chr5.4:19518074-19518093 None:intergenic 35.0%
ATATGAAGGACGCTATGTTT+GGG + chr5.4:19517832-19517851 MS.gene35265:intron 35.0%
ATCAACTGTCATATATAGGC+AGG + chr5.4:19517555-19517574 MS.gene35265:intron 35.0%
ATTAAGCTGTAAACAGCGAA+TGG + chr5.4:19516056-19516075 MS.gene35265:intron 35.0%
CAGAAATGGTTTGATGCTTA+TGG + chr5.4:19517805-19517824 MS.gene35265:intron 35.0%
CATATATGGGAAAAGAAGAG+TGG + chr5.4:19518650-19518669 MS.gene35265:CDS 35.0%
CCTTGCATTTCAAAAATCAC+AGG + chr5.4:19515651-19515670 MS.gene35265:CDS 35.0%
GGTGTAAACAAATTTGTGTG+TGG + chr5.4:19517119-19517138 MS.gene35265:intron 35.0%
GTAAATGCTGCAAAGGAATA+TGG + chr5.4:19517348-19517367 MS.gene35265:CDS 35.0%
GTTACAGATGATGACTTCTT+TGG + chr5.4:19518834-19518853 MS.gene35265:CDS 35.0%
GTTAGTAATCCATGGATCAT+AGG + chr5.4:19516482-19516501 MS.gene35265:intron 35.0%
TAAGACCAGGCTTCATATAT+GGG + chr5.4:19518637-19518656 MS.gene35265:CDS 35.0%
TAGAATAGTGACCTGAACTA+GGG - chr5.4:19518073-19518092 None:intergenic 35.0%
TATATGAAGGACGCTATGTT+TGG + chr5.4:19517831-19517850 MS.gene35265:intron 35.0%
TGAAAAATCCCAACATCTTC+AGG + chr5.4:19518606-19518625 MS.gene35265:intron 35.0%
TGCCTATATATGACAGTTGA+TGG - chr5.4:19517556-19517575 None:intergenic 35.0%
TGCTTAAATATGTCCCTTTG+TGG + chr5.4:19516458-19516477 MS.gene35265:intron 35.0%
TGGATTACTAACACCACAAA+GGG - chr5.4:19516474-19516493 None:intergenic 35.0%
TGTCATATATAGGCAGGTAT+AGG + chr5.4:19517561-19517580 MS.gene35265:intron 35.0%
TTAAGACCAGGCTTCATATA+TGG + chr5.4:19518636-19518655 MS.gene35265:CDS 35.0%
TTATGTTATGCCTAATGTGC+AGG + chr5.4:19517201-19517220 MS.gene35265:intron 35.0%
! ATGGATTACTAACACCACAA+AGG - chr5.4:19516475-19516494 None:intergenic 35.0%
! TTGCTTCCTTTTTGCAATGT+GGG + chr5.4:19516181-19516200 MS.gene35265:intron 35.0%
! TTTGCTTCCTTTTTGCAATG+TGG + chr5.4:19516180-19516199 MS.gene35265:intron 35.0%
! TTTGTGGTGTTAGTAATCCA+TGG + chr5.4:19516474-19516493 MS.gene35265:intron 35.0%
!! AGTTGTGAACTTTTGAGAGA+AGG - chr5.4:19515692-19515711 None:intergenic 35.0%
!! CATCGTTTTTACTTTCATCG+GGG + chr5.4:19518000-19518019 MS.gene35265:CDS 35.0%
!! CCATCGTTTTTACTTTCATC+GGG + chr5.4:19517999-19518018 MS.gene35265:CDS 35.0%
!! TTTGGGATATTCTTTTGAGG+TGG + chr5.4:19517849-19517868 MS.gene35265:intron 35.0%
!!! CCTGTGATTTTTGAAATGCA+AGG - chr5.4:19515654-19515673 None:intergenic 35.0%
!!! TTTTTGAAATGCAAGGTAGG+TGG - chr5.4:19515647-19515666 None:intergenic 35.0%
AAGCTATCTTGGAGAGCTTA+TGG - chr5.4:19518401-19518420 None:intergenic 40.0%
AATGAGAAAGATTAACGGCG+AGG + chr5.4:19517311-19517330 MS.gene35265:CDS 40.0%
AGAGCCTATTGATACTCATG+CGG + chr5.4:19516534-19516553 MS.gene35265:intron 40.0%
AGTAGAGCTAAAGCTGTATG+AGG + chr5.4:19518215-19518234 MS.gene35265:intron 40.0%
ATCAGCCACAACATCTATAG+TGG - chr5.4:19516350-19516369 None:intergenic 40.0%
ATCCATGAATCTGAGTAAGC+AGG - chr5.4:19516910-19516929 None:intergenic 40.0%
CATGGATAGATCAGGTTACT+TGG + chr5.4:19516923-19516942 MS.gene35265:CDS 40.0%
CCCGATGAAAGTAAAAACGA+TGG - chr5.4:19518002-19518021 None:intergenic 40.0%
CTATCCAAATTCCCTAGTTC+AGG + chr5.4:19518059-19518078 MS.gene35265:CDS 40.0%
CTCAGATTCATGGATAGATC+AGG + chr5.4:19516915-19516934 MS.gene35265:CDS 40.0%
GAGATTCCCTTGGATTTAGT+TGG + chr5.4:19518681-19518700 MS.gene35265:CDS 40.0%
GAGTCTGATAAACAAAGACC+TGG + chr5.4:19518127-19518146 MS.gene35265:intron 40.0%
GATCAGGTTACTTGGATTTC+AGG + chr5.4:19516931-19516950 MS.gene35265:CDS 40.0%
GATTCCCTTGGATTTAGTTG+GGG + chr5.4:19518683-19518702 MS.gene35265:CDS 40.0%
GGCTGATGTTATAAGCGAAA+AGG + chr5.4:19516363-19516382 MS.gene35265:CDS 40.0%
GTAGAAAACAAACTTGGGCA+CGG - chr5.4:19517053-19517072 None:intergenic 40.0%
GTCTGATAAACAAAGACCTG+GGG + chr5.4:19518129-19518148 MS.gene35265:intron 40.0%
TATGGGAAAAGAAGAGTGGA+TGG + chr5.4:19518654-19518673 MS.gene35265:CDS 40.0%
TCAAGACCCACATTGCAAAA+AGG - chr5.4:19516190-19516209 None:intergenic 40.0%
TCGTATCTCACTTGATCCAA+TGG + chr5.4:19517098-19517117 MS.gene35265:intron 40.0%
TGAATTTGGGAATTCCTGCA+AGG - chr5.4:19517950-19517969 None:intergenic 40.0%
TGGATCAAGTGAGATACGAT+GGG - chr5.4:19517097-19517116 None:intergenic 40.0%
TTGGATCAAGTGAGATACGA+TGG - chr5.4:19517098-19517117 None:intergenic 40.0%
! AACTTAGAGCTTGCTTGGAT+TGG - chr5.4:19516161-19516180 None:intergenic 40.0%
! AGCAAAACTTAGAGCTTGCT+TGG - chr5.4:19516166-19516185 None:intergenic 40.0%
! ATGTAGATTGTAGTCTTGGG+AGG + chr5.4:19516701-19516720 MS.gene35265:intron 40.0%
! CATTTGCAGAACAGGGTATT+TGG - chr5.4:19518164-19518183 None:intergenic 40.0%
! CTTTTCCCATATATGAAGCC+TGG - chr5.4:19518645-19518664 None:intergenic 40.0%
! GCTGGTTTCATAAGCTATCT+TGG - chr5.4:19518412-19518431 None:intergenic 40.0%
! GTTGCATTGGCAGTTATCAA+TGG + chr5.4:19518810-19518829 MS.gene35265:CDS 40.0%
! TATCCAAACATAGCCTTAGC+AGG + chr5.4:19517727-19517746 MS.gene35265:intron 40.0%
! TATTTGGAGTTTACAACCCC+AGG - chr5.4:19518148-19518167 None:intergenic 40.0%
! TCAGGTATTGTCTTAAGACC+AGG + chr5.4:19518624-19518643 MS.gene35265:intron 40.0%
! TCCTGCTTCTGATCTACTTT+TGG + chr5.4:19518764-19518783 MS.gene35265:CDS 40.0%
!! CAGTGTTGATGATGTTGCAT+TGG + chr5.4:19518797-19518816 MS.gene35265:CDS 40.0%
ACATCATCAACACTGACAGG+TGG - chr5.4:19518792-19518811 None:intergenic 45.0%
AGACACTTGTGAGACTGTGT+TGG - chr5.4:19516112-19516131 None:intergenic 45.0%
AGGAAGCTGCTGATAAGGTA+AGG + chr5.4:19518880-19518899 MS.gene35265:CDS 45.0%
ATCTTCCTCCCTATGATCCA+TGG - chr5.4:19516494-19516513 None:intergenic 45.0%
CAACCTGCTAAGGCTATGTT+TGG - chr5.4:19517733-19517752 None:intergenic 45.0%
CAAGTGAGATACGATGGGAT+GGG - chr5.4:19517092-19517111 None:intergenic 45.0%
CCTGCAAGGTAAAAGAACAG+TGG - chr5.4:19517936-19517955 None:intergenic 45.0%
CGTTTGAGAGAGAAAACGGT+GGG - chr5.4:19515608-19515627 None:intergenic 45.0%
GACGTCCACTATAGATGTTG+TGG + chr5.4:19516342-19516361 MS.gene35265:CDS 45.0%
GATCAAGGAAGCTGCTGATA+AGG + chr5.4:19518875-19518894 MS.gene35265:CDS 45.0%
GCAACATCATCAACACTGAC+AGG - chr5.4:19518795-19518814 None:intergenic 45.0%
GCACGGAAGAGACAAATAGA+TGG - chr5.4:19516834-19516853 None:intergenic 45.0%
GCCAAAAGTAGATCAGAAGC+AGG - chr5.4:19518768-19518787 None:intergenic 45.0%
GCTTATGACTTCTATGCCCT+TGG - chr5.4:19516768-19516787 None:intergenic 45.0%
GGAAGCTGCTGATAAGGTAA+GGG + chr5.4:19518881-19518900 MS.gene35265:CDS 45.0%
GGGTCGTTTGAGAGAGAAAA+CGG - chr5.4:19515612-19515631 None:intergenic 45.0%
GTAATCCATGGATCATAGGG+AGG + chr5.4:19516486-19516505 MS.gene35265:intron 45.0%
GTCCTGCTTACTCAGATTCA+TGG + chr5.4:19516905-19516924 MS.gene35265:CDS 45.0%
GTGACCTGAACTAGGGAATT+TGG - chr5.4:19518066-19518085 None:intergenic 45.0%
TCAAGTGAGATACGATGGGA+TGG - chr5.4:19517093-19517112 None:intergenic 45.0%
TCGTTTGAGAGAGAAAACGG+TGG - chr5.4:19515609-19515628 None:intergenic 45.0%
TGAGACGAGAATAGCACATC+TGG - chr5.4:19517911-19517930 None:intergenic 45.0%
TGTGGCTGTAAATGCTGCAA+AGG + chr5.4:19517341-19517360 MS.gene35265:CDS 45.0%
! ATTGTAGTCTTGGGAGGCAA+TGG + chr5.4:19516707-19516726 MS.gene35265:CDS 45.0%
! CCACTGTTCTTTTACCTTGC+AGG + chr5.4:19517933-19517952 MS.gene35265:intron 45.0%
! TTGTAGTCTTGGGAGGCAAT+GGG + chr5.4:19516708-19516727 MS.gene35265:CDS 45.0%
!! TGTTGGTTCTGCGATATGCA+AGG + chr5.4:19516733-19516752 MS.gene35265:CDS 45.0%
!!! GGATGGTTTTGAGATTCCCT+TGG + chr5.4:19518671-19518690 MS.gene35265:CDS 45.0%
AAAACGGTGGGAATGAGACG+AGG - chr5.4:19515596-19515615 None:intergenic 50.0%
ACTGCAGTAGTCTCAACCCT+CGG + chr5.4:19517267-19517286 MS.gene35265:CDS 50.0%
AGTTATGCAGGAGCAGGTGT+TGG + chr5.4:19516307-19516326 MS.gene35265:CDS 50.0%
ATGAGACGAGGAGAAACAGC+AGG - chr5.4:19515584-19515603 None:intergenic 50.0%
ATGCAAGGCAGCAGTATCCA+AGG + chr5.4:19516748-19516767 MS.gene35265:CDS 50.0%
CCAGCCGCATGAGTATCAAT+AGG - chr5.4:19516541-19516560 None:intergenic 50.0%
CCTATTGATACTCATGCGGC+TGG + chr5.4:19516538-19516557 MS.gene35265:intron 50.0%
CTGTATGAGGATCCAGCAAC+AGG + chr5.4:19518228-19518247 MS.gene35265:intron 50.0%
GCAGCTAACTGCAAATCTGC+AGG - chr5.4:19516287-19516306 None:intergenic 50.0%
GCAGTTAGCTGCAGTTATGC+AGG + chr5.4:19516295-19516314 MS.gene35265:CDS 50.0%
GGCTCCCCAACTAAATCCAA+GGG - chr5.4:19518690-19518709 None:intergenic 50.0%
GTAGGTGGAGTGTGAGTGAA+GGG - chr5.4:19515632-19515651 None:intergenic 50.0%
TAACGGCGAGGCTAATGTTG+TGG + chr5.4:19517323-19517342 MS.gene35265:CDS 50.0%
TCTTCCACAACTCCTGTTGC+TGG - chr5.4:19518243-19518262 None:intergenic 50.0%
TGAGACGAGGAGAAACAGCA+GGG - chr5.4:19515583-19515602 None:intergenic 50.0%
TGCAAGGCAGCAGTATCCAA+GGG + chr5.4:19516749-19516768 MS.gene35265:CDS 50.0%
! AACTGGGACGAAGTACTTCC+TGG + chr5.4:19517240-19517259 MS.gene35265:CDS 50.0%
! CTTTCATCGGGGTACTTCAC+AGG + chr5.4:19518011-19518030 MS.gene35265:CDS 50.0%
! GAAGCAGGAAGTGCGCTTAA+TGG - chr5.4:19518753-19518772 None:intergenic 50.0%
! TTGGAAGGTGCAACCTGCTA+AGG - chr5.4:19517743-19517762 None:intergenic 50.0%
! TTGGGAGGCAATGGGTTTGT+TGG + chr5.4:19516716-19516735 MS.gene35265:CDS 50.0%
AGCTGCAGTTATGCAGGAGC+AGG + chr5.4:19516301-19516320 MS.gene35265:CDS 55.0%
CTCGCTACCAAAACCTCCGA+GGG - chr5.4:19517286-19517305 None:intergenic 55.0%
GAGACTACTGCAGTAGCTCC+AGG - chr5.4:19517261-19517280 None:intergenic 55.0%
GGATCCAGCAACAGGAGTTG+TGG + chr5.4:19518236-19518255 MS.gene35265:intron 55.0%
GGGCTCCCCAACTAAATCCA+AGG - chr5.4:19518691-19518710 None:intergenic 55.0%
GGTAGGTGGAGTGTGAGTGA+AGG - chr5.4:19515633-19515652 None:intergenic 55.0%
! GTCTCAACCCTCGGAGGTTT+TGG + chr5.4:19517276-19517295 MS.gene35265:CDS 55.0%
CCTCGCTACCAAAACCTCCG+AGG - chr5.4:19517287-19517306 None:intergenic 60.0%
GCAGTAGTCTCAACCCTCGG+AGG + chr5.4:19517270-19517289 MS.gene35265:CDS 60.0%
!!! CCTCGGAGGTTTTGGTAGCG+AGG + chr5.4:19517284-19517303 MS.gene35265:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 19515560 19518908 19515560 ID=MS.gene35265
chr5.4 mRNA 19515560 19518908 19515560 ID=MS.gene35265.t1;Parent=MS.gene35265
chr5.4 exon 19515560 19515672 19515560 ID=MS.gene35265.t1.exon1;Parent=MS.gene35265.t1
chr5.4 CDS 19515560 19515672 19515560 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19516291 19516384 19516291 ID=MS.gene35265.t1.exon2;Parent=MS.gene35265.t1
chr5.4 CDS 19516291 19516384 19516291 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19516707 19516795 19516707 ID=MS.gene35265.t1.exon3;Parent=MS.gene35265.t1
chr5.4 CDS 19516707 19516795 19516707 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19516897 19516952 19516897 ID=MS.gene35265.t1.exon4;Parent=MS.gene35265.t1
chr5.4 CDS 19516897 19516952 19516897 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19517223 19517369 19517223 ID=MS.gene35265.t1.exon5;Parent=MS.gene35265.t1
chr5.4 CDS 19517223 19517369 19517223 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19517955 19518080 19517955 ID=MS.gene35265.t1.exon6;Parent=MS.gene35265.t1
chr5.4 CDS 19517955 19518080 19517955 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
chr5.4 exon 19518628 19518908 19518628 ID=MS.gene35265.t1.exon7;Parent=MS.gene35265.t1
chr5.4 CDS 19518628 19518908 19518628 ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1
Gene Sequence

>MS.gene35265

ATGGCGTCGTTTTTGACTCTCCCTGCTGTTTCTCCTCGTCTCATTCCCACCGTTTTCTCTCTCAAACGACCCTTCACTCACACTCCACCTACCTTGCATTTCAAAAATCACAGGTTTGTATTTTCACTTCCTTCTCTCAAAAGTTCACAACTTTTTTCATTTCTAAATTCTGGGTTTCATTTAATTTTTTAAATTCTCTCTTAGTTTTAATGTTTTCTGCTTTTTTTCTACTGTTTAGAACATGTTACCATGAAATTTGTTTTACTGAGGTTGTTTGTTTGTTTGCTGATGATAGATTATTGTTCATAATTATCAATTTGAGTTTTAGTGAGTAATGGATTGTTGCAAGATAATTTATTTGATTATTTTTTCATTTTTTGGATTTGGTTAGTGAAATAGTTTAAGTTGTTGTGTTTCATTATTGTTTGATTAATGTATAAGCTAATCATTATTATACATTAAAATTCAACTTTTCCATTATGGTTGTTTTATGTTAATTAAGCTGTAAACAGCGAATGGATGTGTTATAATTTGTTTCGTTAAGTTCTTCCAACACAGTCTCACAAGTGTCTTATGTTAGTATATAAGCTCAAATAAACCAATCCAAGCAAGCTCTAAGTTTTGCTTCCTTTTTGCAATGTGGGTCTTGATTGTCTTGTGATTAAAGATTGGGTTTAATCATCTATGTTGTGTGATGTGTCTTATAATTGTTTGTGTATATTTGCCTGCAGATTTGCAGTTAGCTGCAGTTATGCAGGAGCAGGTGTTGGTAATTTTGAATCGACGTCCACTATAGATGTTGTGGCTGATGTTATAAGCGAAAAGGTATCTGCAGTTCTGCACACTTCCCATTTTTTTTATACTTTTCATTTTTAGGTACTTTTTGCAAACACATTTTTGCTTAAATATGTCCCTTTGTGGTGTTAGTAATCCATGGATCATAGGGAGGAAGATCATATAAATGAGCATGATAGAGAGCCTATTGATACTCATGCGGCTGGATGTTGAAAAACATAGTGAATTAATTGATAGGATTATGTAAAATGAATACATCAAGCTCGTTATATAGAGCTTAGAAGAAGATTATCAAACTAACTAAACTCTAACTAACTAAATTGTAAAACAATTTCTTATTTCTAATATGTAGATTGTAGTCTTGGGAGGCAATGGGTTTGTTGGTTCTGCGATATGCAAGGCAGCAGTATCCAAGGGCATAGAAGTCATAAGCTTAAACAGGTCTGTGACACGTCGAACTAATTCACTACATATCGCCATCTATTTGTCTCTTCCGTGCCTCTTTTGTTTTTGTGTATTCAACTGAAATTTTGTTTTAACAGGTCAGGACGTCCTGCTTACTCAGATTCATGGATAGATCAGGTTACTTGGATTTCAGGCATGTGAACTTAACCTAATAAACTAAACATGTCTAGGTCTATGGTGCACAAATAAGATAGTGTTGCCGAGTACAAAAAAAGTAAGATAATATTGTACCGTGCCCAAGTTTGTTTTCTACTATTGGATCATTAAGTCCCATCCCATCGTATCTCACTTGATCCAATGGTGTAAACAAATTTGTGTGTGGCACAACATTTATCTCACTTGTGATCTCAGTAATCTTTTTTTCTGGAGAGTATTTCAGTGTTATGTTATGCCTAATGTGCAGGAGATGTTTTTTATGTAAACTGGGACGAAGTACTTCCTGGAGCTACTGCAGTAGTCTCAACCCTCGGAGGTTTTGGTAGCGAGGAACAAATGAGAAAGATTAACGGCGAGGCTAATGTTGTGGCTGTAAATGCTGCAAAGGAATATGGTGAGCCATCTCATTGAGCATTATTTTGCAGTTAAATTATTCATTTGCATTTATCTTTTACCTTTCATGTTTGACTATATTATTGTAGCCCTAAACTTTCATTCATACCCTTCCATAAAGCAAGACTTAAAATTTTGAGAGCGTTGTTATGTGCTTTTTACAAGGCAAGTTTCATTCAAAATTCCATCAACTGTCATATATAGGCAGGTATAGGATGATTGAAATGCATAGAATTGTGTGACAGTATCATTAGATCAAGTTGAATGCTTACAGATATGGAGATGGATAAGTGAAATAAATTAAACATAACCACTTATATGATAAGTACTTATGCTAGAATCGCTTGATTAAGTTGTTTATCCAAACATAGCCTTAGCAGGTTGCACCTTCCAATGTTTCTTTACATTTTAGTTGGCTGGTTTGTATATATACGCACAGAAATGGTTTGATGCTTATGGCTTTATATGAAGGACGCTATGTTTGGGATATTCTTTTGAGGTGGTGCTTTAAATTTATTTATGGAATCGGAGATTAATAACCAGATGTGCTATTCTCGTCTCACACCACTGTTCTTTTACCTTGCAGGAATTCCCAAATTCATATTGATCTCAGTTCATGACTATAACTTACCATCGTTTTTACTTTCATCGGGGTACTTCACAGGAAAGAGAAAAGCAGAATCTGAGGTTCTATCCAAATTCCCTAGTTCAGGTCACTATTCTATGCCTTTCATGATCTTAAAACTAAATTAGTATTCGAGTCTGATAAACAAAGACCTGGGGTTGTAAACTCCAAATACCCTGTTCTGCAAATGAGTCATTTGCCGAAATGATTATTTTTGGACTAGTAGAGCTAAAGCTGTATGAGGATCCAGCAACAGGAGTTGTGGAAGATGAATATCATGCTTTTACGGCCTGTTTGCATTAACTTATTTGAGACTATCTACCGGTATAAGCATTTGTGAGATTATTTGAGAGAGCTTATGGAAACAACTTATGACATGTCCATGAGCTGTTTTTAGCTTACTTCCATAAGCTCTCCAAGATAGCTTATGAAACCAGCTTATAATTTATTCATATGAAAACAATTTGACTTTATTTTATCTCTTGTTATAGAAATGGCATTAACATATACAGAAAGCACTTATATGATAAGTGCCTATGTGATAAGTGCTTAATTAAGCTGTTTTAATTTATATTATGCTTTTTTAATTGATTTTCATTCTCGAAAATTCACTGAAAAATCCCAACATCTTCAGGTATTGTCTTAAGACCAGGCTTCATATATGGGAAAAGAAGAGTGGATGGTTTTGAGATTCCCTTGGATTTAGTTGGGGAGCCCGCTGAAAGAATTCTAAAATCAGTAGAGAACTTCACAAAACCATTAAGCGCACTTCCTGCTTCTGATCTACTTTTGGCTCCACCTGTCAGTGTTGATGATGTTGCATTGGCAGTTATCAATGGTGTTACAGATGATGACTTCTTTGGTGTGTTTACAATTGATCAGATCAAGGAAGCTGCTGATAAGGTAAGGGTATAA

Protein sequence

>MS.gene35265.t1

MASFLTLPAVSPRLIPTVFSLKRPFTHTPPTLHFKNHRFAVSCSYAGAGVGNFESTSTIDVVADVISEKIVVLGGNGFVGSAICKAAVSKGIEVISLNRSGRPAYSDSWIDQVTWISGDVFYVNWDEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKFPSSGIVLRPGFIYGKRRVDGFEIPLDLVGEPAERILKSVENFTKPLSALPASDLLLAPPVSVDDVALAVINGVTDDDFFGVFTIDQIKEAADKVRV