Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35265.t1 | XP_003612805.1 | 97.4 | 302 | 7 | 1 | 1 | 301 | 1 | 302 | 2.50E-160 | 574.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35265.t1 | Q9FVR6 | 66.2 | 302 | 93 | 3 | 1 | 300 | 1 | 295 | 4.4e-113 | 409.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35265.t1 | G7KCB8 | 97.4 | 302 | 7 | 1 | 1 | 301 | 1 | 302 | 1.8e-160 | 574.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050593 | MS.gene35265 | 0.823396 | 1.42E-53 | -1.69E-46 |
MS.gene050670 | MS.gene35265 | 0.830753 | 2.46E-55 | -1.69E-46 |
MS.gene051360 | MS.gene35265 | 0.807568 | 4.74E-50 | -1.69E-46 |
MS.gene051387 | MS.gene35265 | 0.842092 | 3.19E-58 | -1.69E-46 |
MS.gene051525 | MS.gene35265 | 0.861912 | 7.35E-64 | -1.69E-46 |
MS.gene051588 | MS.gene35265 | 0.844579 | 6.93E-59 | -1.69E-46 |
MS.gene052414 | MS.gene35265 | 0.824117 | 9.60E-54 | -1.69E-46 |
MS.gene052481 | MS.gene35265 | 0.819616 | 1.06E-52 | -1.69E-46 |
MS.gene052485 | MS.gene35265 | 0.815038 | 1.13E-51 | -1.69E-46 |
MS.gene052501 | MS.gene35265 | 0.823772 | 1.16E-53 | -1.69E-46 |
MS.gene052505 | MS.gene35265 | 0.812674 | 3.76E-51 | -1.69E-46 |
MS.gene052982 | MS.gene35265 | 0.818122 | 2.31E-52 | -1.69E-46 |
MS.gene053169 | MS.gene35265 | 0.800916 | 1.15E-48 | -1.69E-46 |
MS.gene054719 | MS.gene35265 | 0.810689 | 1.02E-50 | -1.69E-46 |
MS.gene054920 | MS.gene35265 | 0.80661 | 7.57E-50 | -1.69E-46 |
MS.gene054927 | MS.gene35265 | 0.800926 | 1.15E-48 | -1.69E-46 |
MS.gene055911 | MS.gene35265 | 0.807142 | 5.84E-50 | -1.69E-46 |
MS.gene056166 | MS.gene35265 | 0.820739 | 5.85E-53 | -1.69E-46 |
MS.gene056407 | MS.gene35265 | 0.824123 | 9.57E-54 | -1.69E-46 |
MS.gene056514 | MS.gene35265 | 0.804437 | 2.16E-49 | -1.69E-46 |
MS.gene056877 | MS.gene35265 | 0.810617 | 1.05E-50 | -1.69E-46 |
MS.gene057330 | MS.gene35265 | 0.810779 | 9.73E-51 | -1.69E-46 |
MS.gene057749 | MS.gene35265 | 0.825612 | 4.26E-54 | -1.69E-46 |
MS.gene057823 | MS.gene35265 | 0.834593 | 2.74E-56 | -1.69E-46 |
MS.gene058007 | MS.gene35265 | 0.809368 | 1.96E-50 | -1.69E-46 |
MS.gene058019 | MS.gene35265 | 0.836028 | 1.19E-56 | -1.69E-46 |
MS.gene058376 | MS.gene35265 | 0.814273 | 1.68E-51 | -1.69E-46 |
MS.gene058444 | MS.gene35265 | 0.871205 | 8.16E-67 | -1.69E-46 |
MS.gene058700 | MS.gene35265 | 0.871184 | 8.29E-67 | -1.69E-46 |
MS.gene058995 | MS.gene35265 | 0.809539 | 1.80E-50 | -1.69E-46 |
MS.gene05907 | MS.gene35265 | 0.802338 | 5.88E-49 | -1.69E-46 |
MS.gene059420 | MS.gene35265 | 0.806278 | 8.89E-50 | -1.69E-46 |
MS.gene059455 | MS.gene35265 | 0.821549 | 3.81E-53 | -1.69E-46 |
MS.gene059676 | MS.gene35265 | 0.801455 | 8.93E-49 | -1.69E-46 |
MS.gene059933 | MS.gene35265 | 0.818284 | 2.12E-52 | -1.69E-46 |
MS.gene060401 | MS.gene35265 | 0.80456 | 2.04E-49 | -1.69E-46 |
MS.gene060403 | MS.gene35265 | 0.832655 | 8.35E-56 | -1.69E-46 |
MS.gene060835 | MS.gene35265 | 0.808194 | 3.49E-50 | -1.69E-46 |
MS.gene060837 | MS.gene35265 | 0.824952 | 6.11E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35265.t1 | MTR_5g029260 | 97.351 | 302 | 7 | 1 | 1 | 301 | 1 | 302 | 0.0 | 587 |
MS.gene35265.t1 | MTR_3g105660 | 47.706 | 218 | 108 | 3 | 67 | 283 | 55 | 267 | 1.03e-59 | 192 |
MS.gene35265.t1 | MTR_6g005650 | 91.837 | 49 | 4 | 0 | 117 | 165 | 138 | 186 | 5.53e-22 | 94.0 |
MS.gene35265.t1 | MTR_7g405800 | 93.617 | 47 | 3 | 0 | 119 | 165 | 73 | 119 | 5.99e-22 | 92.4 |
MS.gene35265.t1 | MTR_6g009130 | 62.500 | 56 | 21 | 0 | 118 | 173 | 124 | 179 | 7.61e-16 | 74.7 |
MS.gene35265.t1 | MTR_6g466340 | 87.234 | 47 | 6 | 0 | 121 | 167 | 9 | 55 | 1.28e-14 | 70.5 |
MS.gene35265.t1 | MTR_6g464960 | 87.234 | 47 | 6 | 0 | 121 | 167 | 9 | 55 | 3.13e-14 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35265.t1 | AT1G32220 | 66.225 | 302 | 93 | 3 | 1 | 300 | 1 | 295 | 4.33e-147 | 415 |
MS.gene35265.t1 | AT5G10730 | 45.494 | 233 | 120 | 4 | 52 | 283 | 42 | 268 | 3.59e-55 | 181 |
MS.gene35265.t1 | AT5G15910 | 47.005 | 217 | 110 | 3 | 68 | 283 | 42 | 254 | 4.90e-51 | 169 |
MS.gene35265.t1 | AT5G15910 | 46.759 | 216 | 110 | 3 | 69 | 283 | 2 | 213 | 7.02e-51 | 167 |
Find 72 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTGAGATCAATATGAATT+TGG | 0.138307 | 5.4:-19517961 | None:intergenic |
GATCAGGTTACTTGGATTTC+AGG | 0.214857 | 5.4:+19516931 | MS.gene35265:CDS |
TCCTGCTTCTGATCTACTTT+TGG | 0.243895 | 5.4:+19518764 | MS.gene35265:CDS |
GTGACCTGAACTAGGGAATT+TGG | 0.262436 | 5.4:-19518063 | None:intergenic |
TTAAGACCAGGCTTCATATA+TGG | 0.287107 | 5.4:+19518636 | MS.gene35265:CDS |
GTCTCAACCCTCGGAGGTTT+TGG | 0.292716 | 5.4:+19517276 | MS.gene35265:CDS |
GAAGCAGGAAGTGCGCTTAA+TGG | 0.325078 | 5.4:-19518750 | None:intergenic |
AGATTCCCTTGGATTTAGTT+GGG | 0.330713 | 5.4:+19518682 | MS.gene35265:CDS |
CATGGATAGATCAGGTTACT+TGG | 0.349750 | 5.4:+19516923 | MS.gene35265:CDS |
GTAAATGCTGCAAAGGAATA+TGG | 0.364198 | 5.4:+19517348 | MS.gene35265:CDS |
GTTACAGATGATGACTTCTT+TGG | 0.364428 | 5.4:+19518834 | MS.gene35265:CDS |
CTATCCAAATTCCCTAGTTC+AGG | 0.367351 | 5.4:+19518059 | MS.gene35265:CDS |
AACTGGGACGAAGTACTTCC+TGG | 0.372764 | 5.4:+19517240 | MS.gene35265:CDS |
GAGATTCCCTTGGATTTAGT+TGG | 0.373207 | 5.4:+19518681 | MS.gene35265:CDS |
TAATATGTAGATTGTAGTCT+TGG | 0.384812 | 5.4:+19516697 | MS.gene35265:intron |
TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5.4:+19516716 | MS.gene35265:CDS |
ACTGAGATCAATATGAATTT+GGG | 0.389375 | 5.4:-19517960 | None:intergenic |
GCTTATGACTTCTATGCCCT+TGG | 0.419174 | 5.4:-19516765 | None:intergenic |
CTTTCATCGGGGTACTTCAC+AGG | 0.421460 | 5.4:+19518011 | MS.gene35265:CDS |
TAGAAGTCATAAGCTTAAAC+AGG | 0.429364 | 5.4:+19516774 | MS.gene35265:CDS |
TAAGACCAGGCTTCATATAT+GGG | 0.441094 | 5.4:+19518637 | MS.gene35265:CDS |
GATCAAGGAAGCTGCTGATA+AGG | 0.445846 | 5.4:+19518875 | MS.gene35265:CDS |
GCAGTTAGCTGCAGTTATGC+AGG | 0.452311 | 5.4:+19516295 | MS.gene35265:CDS |
CTCAGATTCATGGATAGATC+AGG | 0.452914 | 5.4:+19516915 | MS.gene35265:CDS |
ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5.4:+19516707 | MS.gene35265:CDS |
GTCCTGCTTACTCAGATTCA+TGG | 0.463208 | 5.4:+19516905 | MS.gene35265:CDS |
AATATGTAGATTGTAGTCTT+GGG | 0.479908 | 5.4:+19516698 | MS.gene35265:intron |
AGCTGCAGTTATGCAGGAGC+AGG | 0.483868 | 5.4:+19516301 | MS.gene35265:CDS |
ATCAGCCACAACATCTATAG+TGG | 0.490070 | 5.4:-19516347 | None:intergenic |
GAGACTACTGCAGTAGCTCC+AGG | 0.492058 | 5.4:-19517258 | None:intergenic |
ATAGAATAGTGACCTGAACT+AGG | 0.499011 | 5.4:-19518071 | None:intergenic |
CAGTGTTGATGATGTTGCAT+TGG | 0.500479 | 5.4:+19518797 | MS.gene35265:CDS |
AGGAAGCTGCTGATAAGGTA+AGG | 0.501695 | 5.4:+19518880 | MS.gene35265:CDS |
TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5.4:+19516708 | MS.gene35265:CDS |
ATGAGACGAGGAGAAACAGC+AGG | 0.508541 | 5.4:-19515581 | None:intergenic |
GGCTGATGTTATAAGCGAAA+AGG | 0.514531 | 5.4:+19516363 | MS.gene35265:CDS |
GTTGCATTGGCAGTTATCAA+TGG | 0.527638 | 5.4:+19518810 | MS.gene35265:CDS |
GAACAAATGAGAAAGATTAA+CGG | 0.530717 | 5.4:+19517306 | MS.gene35265:CDS |
GTTTACAATTGATCAGATCA+AGG | 0.531543 | 5.4:+19518860 | MS.gene35265:CDS |
ATCCATGAATCTGAGTAAGC+AGG | 0.531810 | 5.4:-19516907 | None:intergenic |
GGGTCGTTTGAGAGAGAAAA+CGG | 0.535571 | 5.4:-19515609 | None:intergenic |
GATTCCCTTGGATTTAGTTG+GGG | 0.537599 | 5.4:+19518683 | MS.gene35265:CDS |
GCCAAAAGTAGATCAGAAGC+AGG | 0.539884 | 5.4:-19518765 | None:intergenic |
ATGCAAGGCAGCAGTATCCA+AGG | 0.543594 | 5.4:+19516748 | MS.gene35265:CDS |
TCAGGTATTGTCTTAAGACC+AGG | 0.551242 | 5.4:+19518624 | MS.gene35265:intron |
AAAGAGAAAAGCAGAATCTG+AGG | 0.554082 | 5.4:+19518034 | MS.gene35265:CDS |
GGGCTCCCCAACTAAATCCA+AGG | 0.564003 | 5.4:-19518688 | None:intergenic |
GCAACATCATCAACACTGAC+AGG | 0.569664 | 5.4:-19518792 | None:intergenic |
TATGGGAAAAGAAGAGTGGA+TGG | 0.584509 | 5.4:+19518654 | MS.gene35265:CDS |
GGTAGGTGGAGTGTGAGTGA+AGG | 0.586620 | 5.4:-19515630 | None:intergenic |
GTAGGTGGAGTGTGAGTGAA+GGG | 0.586862 | 5.4:-19515629 | None:intergenic |
TGTTGGTTCTGCGATATGCA+AGG | 0.592323 | 5.4:+19516733 | MS.gene35265:CDS |
AGTTATGCAGGAGCAGGTGT+TGG | 0.603055 | 5.4:+19516307 | MS.gene35265:CDS |
GGCTCCCCAACTAAATCCAA+GGG | 0.605980 | 5.4:-19518687 | None:intergenic |
TAGAATAGTGACCTGAACTA+GGG | 0.608853 | 5.4:-19518070 | None:intergenic |
CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | 5.4:-19517283 | None:intergenic |
TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | 5.4:+19517323 | MS.gene35265:CDS |
CATATATGGGAAAAGAAGAG+TGG | 0.616736 | 5.4:+19518650 | MS.gene35265:CDS |
ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5.4:+19516701 | MS.gene35265:intron |
ACTGCAGTAGTCTCAACCCT+CGG | 0.629761 | 5.4:+19517267 | MS.gene35265:CDS |
GGAAGCTGCTGATAAGGTAA+GGG | 0.634099 | 5.4:+19518881 | MS.gene35265:CDS |
GACGTCCACTATAGATGTTG+TGG | 0.638034 | 5.4:+19516342 | MS.gene35265:CDS |
CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | 5.4:-19517284 | None:intergenic |
TGTGGCTGTAAATGCTGCAA+AGG | 0.647873 | 5.4:+19517341 | MS.gene35265:CDS |
TGCAAGGCAGCAGTATCCAA+GGG | 0.660059 | 5.4:+19516749 | MS.gene35265:CDS |
CGTTTGAGAGAGAAAACGGT+GGG | 0.661357 | 5.4:-19515605 | None:intergenic |
ACATCATCAACACTGACAGG+TGG | 0.667644 | 5.4:-19518789 | None:intergenic |
AAAACGGTGGGAATGAGACG+AGG | 0.678492 | 5.4:-19515593 | None:intergenic |
TGAGACGAGGAGAAACAGCA+GGG | 0.692443 | 5.4:-19515580 | None:intergenic |
AATGAGAAAGATTAACGGCG+AGG | 0.694239 | 5.4:+19517311 | MS.gene35265:CDS |
GCAGTAGTCTCAACCCTCGG+AGG | 0.734128 | 5.4:+19517270 | MS.gene35265:CDS |
TCGTTTGAGAGAGAAAACGG+TGG | 0.746736 | 5.4:-19515606 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAATTTATTTATGGAAT+CGG | + | chr5.4:19517875-19517894 | MS.gene35265:intron | 10.0% |
!!! | AATGAAAAGTATAAAAAAAA+TGG | - | chr5.4:19516411-19516430 | None:intergenic | 10.0% |
!!! | ATGAAAAGTATAAAAAAAAT+GGG | - | chr5.4:19516410-19516429 | None:intergenic | 10.0% |
!!! | TTGATTATTTTTTCATTTTT+TGG | + | chr5.4:19515918-19515937 | MS.gene35265:intron | 10.0% |
!!! | TTTTTATACTTTTCATTTTT+AGG | + | chr5.4:19516414-19516433 | MS.gene35265:intron | 10.0% |
!!! | ATTTTTTCATTTTTTGGATT+TGG | + | chr5.4:19515924-19515943 | MS.gene35265:intron | 15.0% |
!!! | TTTTTTCATTTCTAAATTCT+GGG | + | chr5.4:19515711-19515730 | MS.gene35265:intron | 15.0% |
!! | AACATAGTGAATTAATTGAT+AGG | + | chr5.4:19516570-19516589 | MS.gene35265:intron | 20.0% |
!! | ACTAAAATGTAAAGAAACAT+TGG | - | chr5.4:19517762-19517781 | None:intergenic | 20.0% |
!! | ATAAGTACTTATCATATAAG+TGG | - | chr5.4:19517682-19517701 | None:intergenic | 20.0% |
!! | ATAATATAGTCAAACATGAA+AGG | - | chr5.4:19517433-19517452 | None:intergenic | 20.0% |
!! | CATATGAATAAATTATAAGC+TGG | - | chr5.4:19518430-19518449 | None:intergenic | 20.0% |
!! | TAGTCCAAAAATAATCATTT+CGG | - | chr5.4:19518196-19518215 | None:intergenic | 20.0% |
!! | TTAACATAAAACAACCATAA+TGG | - | chr5.4:19516037-19516056 | None:intergenic | 20.0% |
!!! | AAAATTCAACTTTTCCATTA+TGG | + | chr5.4:19516020-19516039 | MS.gene35265:intron | 20.0% |
!!! | AAATTTTAAGTCTTGCTTTA+TGG | - | chr5.4:19517485-19517504 | None:intergenic | 20.0% |
!!! | AACTGAAATTTTGTTTTAAC+AGG | + | chr5.4:19516875-19516894 | MS.gene35265:intron | 20.0% |
!!! | AGATGTTTTTTATGTAAACT+GGG | + | chr5.4:19517224-19517243 | MS.gene35265:CDS | 20.0% |
!!! | ATGTTTCTTTACATTTTAGT+TGG | + | chr5.4:19517762-19517781 | MS.gene35265:intron | 20.0% |
!!! | CTTTTTTCATTTCTAAATTC+TGG | + | chr5.4:19515710-19515729 | MS.gene35265:intron | 20.0% |
!!! | TATCTTACTTTTTTTGTACT+CGG | - | chr5.4:19517022-19517041 | None:intergenic | 20.0% |
!!! | TGGTGCTTTAAATTTATTTA+TGG | + | chr5.4:19517869-19517888 | MS.gene35265:intron | 20.0% |
!!! | TTTAGTTTTAAGATCATGAA+AGG | - | chr5.4:19518098-19518117 | None:intergenic | 20.0% |
!!! | TTTATCTCTTGTTATAGAAA+TGG | + | chr5.4:19518468-19518487 | MS.gene35265:intron | 20.0% |
! | AAATGTAAAGAAACATTGGA+AGG | - | chr5.4:19517758-19517777 | None:intergenic | 25.0% |
! | AACTGAGATCAATATGAATT+TGG | - | chr5.4:19517964-19517983 | None:intergenic | 25.0% |
! | AATATGTAGATTGTAGTCTT+GGG | + | chr5.4:19516698-19516717 | MS.gene35265:intron | 25.0% |
! | ACTGAGATCAATATGAATTT+GGG | - | chr5.4:19517963-19517982 | None:intergenic | 25.0% |
! | ATTGTCTTGTGATTAAAGAT+TGG | + | chr5.4:19516209-19516228 | MS.gene35265:intron | 25.0% |
! | CAATAGTAGAAAACAAACTT+GGG | - | chr5.4:19517058-19517077 | None:intergenic | 25.0% |
! | CTAATAAACTAAACATGTCT+AGG | + | chr5.4:19516968-19516987 | MS.gene35265:intron | 25.0% |
! | GAACAAATGAGAAAGATTAA+CGG | + | chr5.4:19517306-19517325 | MS.gene35265:CDS | 25.0% |
! | TAATATGTAGATTGTAGTCT+TGG | + | chr5.4:19516697-19516716 | MS.gene35265:intron | 25.0% |
! | TAATTAAGCACTTATCACAT+AGG | - | chr5.4:19518530-19518549 | None:intergenic | 25.0% |
! | TCAAATAAGTTAATGCAAAC+AGG | - | chr5.4:19518286-19518305 | None:intergenic | 25.0% |
! | TGAATACACAAAAACAAAAG+AGG | - | chr5.4:19516856-19516875 | None:intergenic | 25.0% |
! | TTGTCTTGTGATTAAAGATT+GGG | + | chr5.4:19516210-19516229 | MS.gene35265:intron | 25.0% |
!! | AGATGAATATCATGCTTTTA+CGG | + | chr5.4:19518260-19518279 | MS.gene35265:intron | 25.0% |
!! | CTAGACATGTTTAGTTTATT+AGG | - | chr5.4:19516970-19516989 | None:intergenic | 25.0% |
!! | TTTGCCGAAATGATTATTTT+TGG | + | chr5.4:19518189-19518208 | MS.gene35265:intron | 25.0% |
!!! | AAATTTTGTTTTAACAGGTC+AGG | + | chr5.4:19516880-19516899 | MS.gene35265:intron | 25.0% |
!!! | ATCTCAGTAATCTTTTTTTC+TGG | + | chr5.4:19517164-19517183 | MS.gene35265:intron | 25.0% |
!!! | ATTTGAGTTTTAGTGAGTAA+TGG | + | chr5.4:19515875-19515894 | MS.gene35265:intron | 25.0% |
!!! | GAGATGTTTTTTATGTAAAC+TGG | + | chr5.4:19517223-19517242 | MS.gene35265:CDS | 25.0% |
!!! | TGATTTTAGAATTCTTTCAG+CGG | - | chr5.4:19518712-19518731 | None:intergenic | 25.0% |
AAGTTGAATGCTTACAGATA+TGG | + | chr5.4:19517626-19517645 | MS.gene35265:intron | 30.0% | |
AATCTCACAAATGCTTATAC+CGG | - | chr5.4:19518318-19518337 | None:intergenic | 30.0% | |
AGATTATTTGAGAGAGCTTA+TGG | + | chr5.4:19518333-19518352 | MS.gene35265:intron | 30.0% | |
AGGGTATGAATGAAAGTTTA+GGG | - | chr5.4:19517461-19517480 | None:intergenic | 30.0% | |
CAAAATAATGCTCAATGAGA+TGG | - | chr5.4:19517378-19517397 | None:intergenic | 30.0% | |
CCAATAGTAGAAAACAAACT+TGG | - | chr5.4:19517059-19517078 | None:intergenic | 30.0% | |
CCTCAGTAAAACAAATTTCA+TGG | - | chr5.4:19515810-19515829 | None:intergenic | 30.0% | |
GTTTACAATTGATCAGATCA+AGG | + | chr5.4:19518860-19518879 | MS.gene35265:CDS | 30.0% | |
TAGAAGTCATAAGCTTAAAC+AGG | + | chr5.4:19516774-19516793 | MS.gene35265:CDS | 30.0% | |
TGTATATATACGCACAGAAA+TGG | + | chr5.4:19517791-19517810 | MS.gene35265:intron | 30.0% | |
TTAAGTCTTGCTTTATGGAA+GGG | - | chr5.4:19517480-19517499 | None:intergenic | 30.0% | |
TTAGTAATCCATGGATCATA+GGG | + | chr5.4:19516483-19516502 | MS.gene35265:intron | 30.0% | |
TTCCATCAACTGTCATATAT+AGG | + | chr5.4:19517551-19517570 | MS.gene35265:intron | 30.0% | |
TTTAAGTCTTGCTTTATGGA+AGG | - | chr5.4:19517481-19517500 | None:intergenic | 30.0% | |
! | AAGGGTATGAATGAAAGTTT+AGG | - | chr5.4:19517462-19517481 | None:intergenic | 30.0% |
! | ACTTATTTGAGACTATCTAC+CGG | + | chr5.4:19518296-19518315 | MS.gene35265:intron | 30.0% |
! | CACAAATTTGTTTACACCAT+TGG | - | chr5.4:19517117-19517136 | None:intergenic | 30.0% |
!! | ACCATCGTTTTTACTTTCAT+CGG | + | chr5.4:19517998-19518017 | MS.gene35265:CDS | 30.0% |
!! | ATGCTTATGGCTTTATATGA+AGG | + | chr5.4:19517818-19517837 | MS.gene35265:intron | 30.0% |
!! | ATGTTTGGGATATTCTTTTG+AGG | + | chr5.4:19517846-19517865 | MS.gene35265:intron | 30.0% |
!! | CCAAGTTTGTTTTCTACTAT+TGG | + | chr5.4:19517056-19517075 | MS.gene35265:intron | 30.0% |
!! | GTTGTTATGTGCTTTTTACA+AGG | + | chr5.4:19517512-19517531 | MS.gene35265:intron | 30.0% |
!!! | CCATGAAATTTGTTTTACTG+AGG | + | chr5.4:19515807-19515826 | MS.gene35265:intron | 30.0% |
!!! | GATTTTAGAATTCTTTCAGC+GGG | - | chr5.4:19518711-19518730 | None:intergenic | 30.0% |
!!! | TGATTTTTGAAATGCAAGGT+AGG | - | chr5.4:19515650-19515669 | None:intergenic | 30.0% |
!!! | TTCTTTACATTTTAGTTGGC+TGG | + | chr5.4:19517766-19517785 | MS.gene35265:intron | 30.0% |
AAAAACATCTCCTGCACATT+AGG | - | chr5.4:19517214-19517233 | None:intergenic | 35.0% | |
AAAGAGAAAAGCAGAATCTG+AGG | + | chr5.4:19518034-19518053 | MS.gene35265:CDS | 35.0% | |
AAATGACTCATTTGCAGAAC+AGG | - | chr5.4:19518172-19518191 | None:intergenic | 35.0% | |
AAGACAATACCTGAAGATGT+TGG | - | chr5.4:19518618-19518637 | None:intergenic | 35.0% | |
AATGACTCATTTGCAGAACA+GGG | - | chr5.4:19518171-19518190 | None:intergenic | 35.0% | |
AATGCTTACAGATATGGAGA+TGG | + | chr5.4:19517632-19517651 | MS.gene35265:intron | 35.0% | |
ACACAAAAACAAAAGAGGCA+CGG | - | chr5.4:19516851-19516870 | None:intergenic | 35.0% | |
ACTAAACATGTCTAGGTCTA+TGG | + | chr5.4:19516975-19516994 | MS.gene35265:intron | 35.0% | |
AGACAATACCTGAAGATGTT+GGG | - | chr5.4:19518617-19518636 | None:intergenic | 35.0% | |
AGATTCCCTTGGATTTAGTT+GGG | + | chr5.4:19518682-19518701 | MS.gene35265:CDS | 35.0% | |
AGTAAGCTAAAAACAGCTCA+TGG | - | chr5.4:19518377-19518396 | None:intergenic | 35.0% | |
AGTCTGATAAACAAAGACCT+GGG | + | chr5.4:19518128-19518147 | MS.gene35265:intron | 35.0% | |
ATAGAATAGTGACCTGAACT+AGG | - | chr5.4:19518074-19518093 | None:intergenic | 35.0% | |
ATATGAAGGACGCTATGTTT+GGG | + | chr5.4:19517832-19517851 | MS.gene35265:intron | 35.0% | |
ATCAACTGTCATATATAGGC+AGG | + | chr5.4:19517555-19517574 | MS.gene35265:intron | 35.0% | |
ATTAAGCTGTAAACAGCGAA+TGG | + | chr5.4:19516056-19516075 | MS.gene35265:intron | 35.0% | |
CAGAAATGGTTTGATGCTTA+TGG | + | chr5.4:19517805-19517824 | MS.gene35265:intron | 35.0% | |
CATATATGGGAAAAGAAGAG+TGG | + | chr5.4:19518650-19518669 | MS.gene35265:CDS | 35.0% | |
CCTTGCATTTCAAAAATCAC+AGG | + | chr5.4:19515651-19515670 | MS.gene35265:CDS | 35.0% | |
GGTGTAAACAAATTTGTGTG+TGG | + | chr5.4:19517119-19517138 | MS.gene35265:intron | 35.0% | |
GTAAATGCTGCAAAGGAATA+TGG | + | chr5.4:19517348-19517367 | MS.gene35265:CDS | 35.0% | |
GTTACAGATGATGACTTCTT+TGG | + | chr5.4:19518834-19518853 | MS.gene35265:CDS | 35.0% | |
GTTAGTAATCCATGGATCAT+AGG | + | chr5.4:19516482-19516501 | MS.gene35265:intron | 35.0% | |
TAAGACCAGGCTTCATATAT+GGG | + | chr5.4:19518637-19518656 | MS.gene35265:CDS | 35.0% | |
TAGAATAGTGACCTGAACTA+GGG | - | chr5.4:19518073-19518092 | None:intergenic | 35.0% | |
TATATGAAGGACGCTATGTT+TGG | + | chr5.4:19517831-19517850 | MS.gene35265:intron | 35.0% | |
TGAAAAATCCCAACATCTTC+AGG | + | chr5.4:19518606-19518625 | MS.gene35265:intron | 35.0% | |
TGCCTATATATGACAGTTGA+TGG | - | chr5.4:19517556-19517575 | None:intergenic | 35.0% | |
TGCTTAAATATGTCCCTTTG+TGG | + | chr5.4:19516458-19516477 | MS.gene35265:intron | 35.0% | |
TGGATTACTAACACCACAAA+GGG | - | chr5.4:19516474-19516493 | None:intergenic | 35.0% | |
TGTCATATATAGGCAGGTAT+AGG | + | chr5.4:19517561-19517580 | MS.gene35265:intron | 35.0% | |
TTAAGACCAGGCTTCATATA+TGG | + | chr5.4:19518636-19518655 | MS.gene35265:CDS | 35.0% | |
TTATGTTATGCCTAATGTGC+AGG | + | chr5.4:19517201-19517220 | MS.gene35265:intron | 35.0% | |
! | ATGGATTACTAACACCACAA+AGG | - | chr5.4:19516475-19516494 | None:intergenic | 35.0% |
! | TTGCTTCCTTTTTGCAATGT+GGG | + | chr5.4:19516181-19516200 | MS.gene35265:intron | 35.0% |
! | TTTGCTTCCTTTTTGCAATG+TGG | + | chr5.4:19516180-19516199 | MS.gene35265:intron | 35.0% |
! | TTTGTGGTGTTAGTAATCCA+TGG | + | chr5.4:19516474-19516493 | MS.gene35265:intron | 35.0% |
!! | AGTTGTGAACTTTTGAGAGA+AGG | - | chr5.4:19515692-19515711 | None:intergenic | 35.0% |
!! | CATCGTTTTTACTTTCATCG+GGG | + | chr5.4:19518000-19518019 | MS.gene35265:CDS | 35.0% |
!! | CCATCGTTTTTACTTTCATC+GGG | + | chr5.4:19517999-19518018 | MS.gene35265:CDS | 35.0% |
!! | TTTGGGATATTCTTTTGAGG+TGG | + | chr5.4:19517849-19517868 | MS.gene35265:intron | 35.0% |
!!! | CCTGTGATTTTTGAAATGCA+AGG | - | chr5.4:19515654-19515673 | None:intergenic | 35.0% |
!!! | TTTTTGAAATGCAAGGTAGG+TGG | - | chr5.4:19515647-19515666 | None:intergenic | 35.0% |
AAGCTATCTTGGAGAGCTTA+TGG | - | chr5.4:19518401-19518420 | None:intergenic | 40.0% | |
AATGAGAAAGATTAACGGCG+AGG | + | chr5.4:19517311-19517330 | MS.gene35265:CDS | 40.0% | |
AGAGCCTATTGATACTCATG+CGG | + | chr5.4:19516534-19516553 | MS.gene35265:intron | 40.0% | |
AGTAGAGCTAAAGCTGTATG+AGG | + | chr5.4:19518215-19518234 | MS.gene35265:intron | 40.0% | |
ATCAGCCACAACATCTATAG+TGG | - | chr5.4:19516350-19516369 | None:intergenic | 40.0% | |
ATCCATGAATCTGAGTAAGC+AGG | - | chr5.4:19516910-19516929 | None:intergenic | 40.0% | |
CATGGATAGATCAGGTTACT+TGG | + | chr5.4:19516923-19516942 | MS.gene35265:CDS | 40.0% | |
CCCGATGAAAGTAAAAACGA+TGG | - | chr5.4:19518002-19518021 | None:intergenic | 40.0% | |
CTATCCAAATTCCCTAGTTC+AGG | + | chr5.4:19518059-19518078 | MS.gene35265:CDS | 40.0% | |
CTCAGATTCATGGATAGATC+AGG | + | chr5.4:19516915-19516934 | MS.gene35265:CDS | 40.0% | |
GAGATTCCCTTGGATTTAGT+TGG | + | chr5.4:19518681-19518700 | MS.gene35265:CDS | 40.0% | |
GAGTCTGATAAACAAAGACC+TGG | + | chr5.4:19518127-19518146 | MS.gene35265:intron | 40.0% | |
GATCAGGTTACTTGGATTTC+AGG | + | chr5.4:19516931-19516950 | MS.gene35265:CDS | 40.0% | |
GATTCCCTTGGATTTAGTTG+GGG | + | chr5.4:19518683-19518702 | MS.gene35265:CDS | 40.0% | |
GGCTGATGTTATAAGCGAAA+AGG | + | chr5.4:19516363-19516382 | MS.gene35265:CDS | 40.0% | |
GTAGAAAACAAACTTGGGCA+CGG | - | chr5.4:19517053-19517072 | None:intergenic | 40.0% | |
GTCTGATAAACAAAGACCTG+GGG | + | chr5.4:19518129-19518148 | MS.gene35265:intron | 40.0% | |
TATGGGAAAAGAAGAGTGGA+TGG | + | chr5.4:19518654-19518673 | MS.gene35265:CDS | 40.0% | |
TCAAGACCCACATTGCAAAA+AGG | - | chr5.4:19516190-19516209 | None:intergenic | 40.0% | |
TCGTATCTCACTTGATCCAA+TGG | + | chr5.4:19517098-19517117 | MS.gene35265:intron | 40.0% | |
TGAATTTGGGAATTCCTGCA+AGG | - | chr5.4:19517950-19517969 | None:intergenic | 40.0% | |
TGGATCAAGTGAGATACGAT+GGG | - | chr5.4:19517097-19517116 | None:intergenic | 40.0% | |
TTGGATCAAGTGAGATACGA+TGG | - | chr5.4:19517098-19517117 | None:intergenic | 40.0% | |
! | AACTTAGAGCTTGCTTGGAT+TGG | - | chr5.4:19516161-19516180 | None:intergenic | 40.0% |
! | AGCAAAACTTAGAGCTTGCT+TGG | - | chr5.4:19516166-19516185 | None:intergenic | 40.0% |
! | ATGTAGATTGTAGTCTTGGG+AGG | + | chr5.4:19516701-19516720 | MS.gene35265:intron | 40.0% |
! | CATTTGCAGAACAGGGTATT+TGG | - | chr5.4:19518164-19518183 | None:intergenic | 40.0% |
! | CTTTTCCCATATATGAAGCC+TGG | - | chr5.4:19518645-19518664 | None:intergenic | 40.0% |
! | GCTGGTTTCATAAGCTATCT+TGG | - | chr5.4:19518412-19518431 | None:intergenic | 40.0% |
! | GTTGCATTGGCAGTTATCAA+TGG | + | chr5.4:19518810-19518829 | MS.gene35265:CDS | 40.0% |
! | TATCCAAACATAGCCTTAGC+AGG | + | chr5.4:19517727-19517746 | MS.gene35265:intron | 40.0% |
! | TATTTGGAGTTTACAACCCC+AGG | - | chr5.4:19518148-19518167 | None:intergenic | 40.0% |
! | TCAGGTATTGTCTTAAGACC+AGG | + | chr5.4:19518624-19518643 | MS.gene35265:intron | 40.0% |
! | TCCTGCTTCTGATCTACTTT+TGG | + | chr5.4:19518764-19518783 | MS.gene35265:CDS | 40.0% |
!! | CAGTGTTGATGATGTTGCAT+TGG | + | chr5.4:19518797-19518816 | MS.gene35265:CDS | 40.0% |
ACATCATCAACACTGACAGG+TGG | - | chr5.4:19518792-19518811 | None:intergenic | 45.0% | |
AGACACTTGTGAGACTGTGT+TGG | - | chr5.4:19516112-19516131 | None:intergenic | 45.0% | |
AGGAAGCTGCTGATAAGGTA+AGG | + | chr5.4:19518880-19518899 | MS.gene35265:CDS | 45.0% | |
ATCTTCCTCCCTATGATCCA+TGG | - | chr5.4:19516494-19516513 | None:intergenic | 45.0% | |
CAACCTGCTAAGGCTATGTT+TGG | - | chr5.4:19517733-19517752 | None:intergenic | 45.0% | |
CAAGTGAGATACGATGGGAT+GGG | - | chr5.4:19517092-19517111 | None:intergenic | 45.0% | |
CCTGCAAGGTAAAAGAACAG+TGG | - | chr5.4:19517936-19517955 | None:intergenic | 45.0% | |
CGTTTGAGAGAGAAAACGGT+GGG | - | chr5.4:19515608-19515627 | None:intergenic | 45.0% | |
GACGTCCACTATAGATGTTG+TGG | + | chr5.4:19516342-19516361 | MS.gene35265:CDS | 45.0% | |
GATCAAGGAAGCTGCTGATA+AGG | + | chr5.4:19518875-19518894 | MS.gene35265:CDS | 45.0% | |
GCAACATCATCAACACTGAC+AGG | - | chr5.4:19518795-19518814 | None:intergenic | 45.0% | |
GCACGGAAGAGACAAATAGA+TGG | - | chr5.4:19516834-19516853 | None:intergenic | 45.0% | |
GCCAAAAGTAGATCAGAAGC+AGG | - | chr5.4:19518768-19518787 | None:intergenic | 45.0% | |
GCTTATGACTTCTATGCCCT+TGG | - | chr5.4:19516768-19516787 | None:intergenic | 45.0% | |
GGAAGCTGCTGATAAGGTAA+GGG | + | chr5.4:19518881-19518900 | MS.gene35265:CDS | 45.0% | |
GGGTCGTTTGAGAGAGAAAA+CGG | - | chr5.4:19515612-19515631 | None:intergenic | 45.0% | |
GTAATCCATGGATCATAGGG+AGG | + | chr5.4:19516486-19516505 | MS.gene35265:intron | 45.0% | |
GTCCTGCTTACTCAGATTCA+TGG | + | chr5.4:19516905-19516924 | MS.gene35265:CDS | 45.0% | |
GTGACCTGAACTAGGGAATT+TGG | - | chr5.4:19518066-19518085 | None:intergenic | 45.0% | |
TCAAGTGAGATACGATGGGA+TGG | - | chr5.4:19517093-19517112 | None:intergenic | 45.0% | |
TCGTTTGAGAGAGAAAACGG+TGG | - | chr5.4:19515609-19515628 | None:intergenic | 45.0% | |
TGAGACGAGAATAGCACATC+TGG | - | chr5.4:19517911-19517930 | None:intergenic | 45.0% | |
TGTGGCTGTAAATGCTGCAA+AGG | + | chr5.4:19517341-19517360 | MS.gene35265:CDS | 45.0% | |
! | ATTGTAGTCTTGGGAGGCAA+TGG | + | chr5.4:19516707-19516726 | MS.gene35265:CDS | 45.0% |
! | CCACTGTTCTTTTACCTTGC+AGG | + | chr5.4:19517933-19517952 | MS.gene35265:intron | 45.0% |
! | TTGTAGTCTTGGGAGGCAAT+GGG | + | chr5.4:19516708-19516727 | MS.gene35265:CDS | 45.0% |
!! | TGTTGGTTCTGCGATATGCA+AGG | + | chr5.4:19516733-19516752 | MS.gene35265:CDS | 45.0% |
!!! | GGATGGTTTTGAGATTCCCT+TGG | + | chr5.4:19518671-19518690 | MS.gene35265:CDS | 45.0% |
AAAACGGTGGGAATGAGACG+AGG | - | chr5.4:19515596-19515615 | None:intergenic | 50.0% | |
ACTGCAGTAGTCTCAACCCT+CGG | + | chr5.4:19517267-19517286 | MS.gene35265:CDS | 50.0% | |
AGTTATGCAGGAGCAGGTGT+TGG | + | chr5.4:19516307-19516326 | MS.gene35265:CDS | 50.0% | |
ATGAGACGAGGAGAAACAGC+AGG | - | chr5.4:19515584-19515603 | None:intergenic | 50.0% | |
ATGCAAGGCAGCAGTATCCA+AGG | + | chr5.4:19516748-19516767 | MS.gene35265:CDS | 50.0% | |
CCAGCCGCATGAGTATCAAT+AGG | - | chr5.4:19516541-19516560 | None:intergenic | 50.0% | |
CCTATTGATACTCATGCGGC+TGG | + | chr5.4:19516538-19516557 | MS.gene35265:intron | 50.0% | |
CTGTATGAGGATCCAGCAAC+AGG | + | chr5.4:19518228-19518247 | MS.gene35265:intron | 50.0% | |
GCAGCTAACTGCAAATCTGC+AGG | - | chr5.4:19516287-19516306 | None:intergenic | 50.0% | |
GCAGTTAGCTGCAGTTATGC+AGG | + | chr5.4:19516295-19516314 | MS.gene35265:CDS | 50.0% | |
GGCTCCCCAACTAAATCCAA+GGG | - | chr5.4:19518690-19518709 | None:intergenic | 50.0% | |
GTAGGTGGAGTGTGAGTGAA+GGG | - | chr5.4:19515632-19515651 | None:intergenic | 50.0% | |
TAACGGCGAGGCTAATGTTG+TGG | + | chr5.4:19517323-19517342 | MS.gene35265:CDS | 50.0% | |
TCTTCCACAACTCCTGTTGC+TGG | - | chr5.4:19518243-19518262 | None:intergenic | 50.0% | |
TGAGACGAGGAGAAACAGCA+GGG | - | chr5.4:19515583-19515602 | None:intergenic | 50.0% | |
TGCAAGGCAGCAGTATCCAA+GGG | + | chr5.4:19516749-19516768 | MS.gene35265:CDS | 50.0% | |
! | AACTGGGACGAAGTACTTCC+TGG | + | chr5.4:19517240-19517259 | MS.gene35265:CDS | 50.0% |
! | CTTTCATCGGGGTACTTCAC+AGG | + | chr5.4:19518011-19518030 | MS.gene35265:CDS | 50.0% |
! | GAAGCAGGAAGTGCGCTTAA+TGG | - | chr5.4:19518753-19518772 | None:intergenic | 50.0% |
! | TTGGAAGGTGCAACCTGCTA+AGG | - | chr5.4:19517743-19517762 | None:intergenic | 50.0% |
! | TTGGGAGGCAATGGGTTTGT+TGG | + | chr5.4:19516716-19516735 | MS.gene35265:CDS | 50.0% |
AGCTGCAGTTATGCAGGAGC+AGG | + | chr5.4:19516301-19516320 | MS.gene35265:CDS | 55.0% | |
CTCGCTACCAAAACCTCCGA+GGG | - | chr5.4:19517286-19517305 | None:intergenic | 55.0% | |
GAGACTACTGCAGTAGCTCC+AGG | - | chr5.4:19517261-19517280 | None:intergenic | 55.0% | |
GGATCCAGCAACAGGAGTTG+TGG | + | chr5.4:19518236-19518255 | MS.gene35265:intron | 55.0% | |
GGGCTCCCCAACTAAATCCA+AGG | - | chr5.4:19518691-19518710 | None:intergenic | 55.0% | |
GGTAGGTGGAGTGTGAGTGA+AGG | - | chr5.4:19515633-19515652 | None:intergenic | 55.0% | |
! | GTCTCAACCCTCGGAGGTTT+TGG | + | chr5.4:19517276-19517295 | MS.gene35265:CDS | 55.0% |
CCTCGCTACCAAAACCTCCG+AGG | - | chr5.4:19517287-19517306 | None:intergenic | 60.0% | |
GCAGTAGTCTCAACCCTCGG+AGG | + | chr5.4:19517270-19517289 | MS.gene35265:CDS | 60.0% | |
!!! | CCTCGGAGGTTTTGGTAGCG+AGG | + | chr5.4:19517284-19517303 | MS.gene35265:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 19515560 | 19518908 | 19515560 | ID=MS.gene35265 |
chr5.4 | mRNA | 19515560 | 19518908 | 19515560 | ID=MS.gene35265.t1;Parent=MS.gene35265 |
chr5.4 | exon | 19515560 | 19515672 | 19515560 | ID=MS.gene35265.t1.exon1;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19515560 | 19515672 | 19515560 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19516291 | 19516384 | 19516291 | ID=MS.gene35265.t1.exon2;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19516291 | 19516384 | 19516291 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19516707 | 19516795 | 19516707 | ID=MS.gene35265.t1.exon3;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19516707 | 19516795 | 19516707 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19516897 | 19516952 | 19516897 | ID=MS.gene35265.t1.exon4;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19516897 | 19516952 | 19516897 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19517223 | 19517369 | 19517223 | ID=MS.gene35265.t1.exon5;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19517223 | 19517369 | 19517223 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19517955 | 19518080 | 19517955 | ID=MS.gene35265.t1.exon6;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19517955 | 19518080 | 19517955 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
chr5.4 | exon | 19518628 | 19518908 | 19518628 | ID=MS.gene35265.t1.exon7;Parent=MS.gene35265.t1 |
chr5.4 | CDS | 19518628 | 19518908 | 19518628 | ID=cds.MS.gene35265.t1;Parent=MS.gene35265.t1 |
Gene Sequence |
Protein sequence |