Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37512.t1 | KEH19019.1 | 90.7 | 334 | 30 | 1 | 1 | 334 | 1 | 333 | 2.30E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37512.t1 | Q9LE33 | 52.9 | 327 | 139 | 5 | 13 | 333 | 3 | 320 | 5.6e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37512.t1 | A0A072TNE4 | 90.7 | 334 | 30 | 1 | 1 | 334 | 1 | 333 | 1.7e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74946 | MS.gene37512 | PPI |
| MS.gene33395 | MS.gene37512 | PPI |
| MS.gene065032 | MS.gene37512 | PPI |
| MS.gene068262 | MS.gene37512 | PPI |
| MS.gene030057 | MS.gene37512 | PPI |
| MS.gene062351 | MS.gene37512 | PPI |
| MS.gene029300 | MS.gene37512 | PPI |
| MS.gene24947 | MS.gene37512 | PPI |
| MS.gene76198 | MS.gene37512 | PPI |
| MS.gene038363 | MS.gene37512 | PPI |
| MS.gene20834 | MS.gene37512 | PPI |
| MS.gene24945 | MS.gene37512 | PPI |
| MS.gene017129 | MS.gene37512 | PPI |
| MS.gene07262 | MS.gene37512 | PPI |
| MS.gene24946 | MS.gene37512 | PPI |
| MS.gene33396 | MS.gene37512 | PPI |
| MS.gene068259 | MS.gene37512 | PPI |
| MS.gene33394 | MS.gene37512 | PPI |
| MS.gene37513 | MS.gene37512 | PPI |
| MS.gene20783 | MS.gene37512 | PPI |
| MS.gene068263 | MS.gene37512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37512.t1 | MTR_8g033400 | 90.719 | 334 | 30 | 1 | 1 | 334 | 1 | 333 | 0.0 | 620 |
| MS.gene37512.t1 | MTR_8g033410 | 79.042 | 334 | 62 | 1 | 1 | 334 | 1 | 326 | 0.0 | 538 |
| MS.gene37512.t1 | MTR_8g033390 | 59.062 | 320 | 130 | 1 | 16 | 334 | 4 | 323 | 4.24e-137 | 392 |
| MS.gene37512.t1 | MTR_7g075830 | 53.535 | 297 | 123 | 5 | 51 | 333 | 19 | 314 | 5.36e-100 | 297 |
| MS.gene37512.t1 | MTR_4g013100 | 41.503 | 306 | 168 | 3 | 32 | 334 | 17 | 314 | 2.51e-81 | 250 |
| MS.gene37512.t1 | MTR_4g012960 | 41.914 | 303 | 168 | 2 | 32 | 334 | 16 | 310 | 3.23e-81 | 249 |
| MS.gene37512.t1 | MTR_4g013090 | 41.830 | 306 | 167 | 3 | 32 | 334 | 16 | 313 | 9.57e-80 | 246 |
| MS.gene37512.t1 | MTR_2g101840 | 44.737 | 304 | 162 | 3 | 32 | 334 | 16 | 314 | 3.99e-79 | 244 |
| MS.gene37512.t1 | MTR_4g013135 | 41.611 | 298 | 163 | 3 | 40 | 334 | 24 | 313 | 1.97e-66 | 211 |
| MS.gene37512.t1 | MTR_3g005970 | 27.636 | 275 | 161 | 8 | 69 | 316 | 99 | 362 | 9.96e-25 | 103 |
| MS.gene37512.t1 | MTR_1g112510 | 27.309 | 249 | 157 | 3 | 94 | 320 | 94 | 340 | 4.95e-21 | 93.2 |
| MS.gene37512.t1 | MTR_4g005880 | 26.820 | 261 | 173 | 7 | 63 | 313 | 127 | 379 | 2.95e-17 | 83.2 |
| MS.gene37512.t1 | MTR_1g107480 | 26.496 | 234 | 159 | 5 | 87 | 313 | 119 | 346 | 1.72e-16 | 80.9 |
| MS.gene37512.t1 | MTR_6g007170 | 26.103 | 272 | 176 | 7 | 76 | 332 | 111 | 372 | 4.19e-16 | 79.0 |
| MS.gene37512.t1 | MTR_6g007175 | 23.973 | 292 | 182 | 9 | 48 | 332 | 64 | 322 | 1.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37512.t1 | AT2G45630 | 53.354 | 328 | 145 | 5 | 11 | 334 | 15 | 338 | 1.61e-116 | 340 |
| MS.gene37512.t1 | AT1G12550 | 52.905 | 327 | 139 | 5 | 13 | 333 | 3 | 320 | 1.98e-110 | 324 |
| MS.gene37512.t1 | AT1G79870 | 45.848 | 277 | 142 | 2 | 61 | 334 | 42 | 313 | 1.82e-79 | 245 |
| MS.gene37512.t1 | AT1G79870 | 42.701 | 274 | 136 | 2 | 61 | 334 | 42 | 294 | 3.38e-69 | 218 |
| MS.gene37512.t1 | AT2G45630 | 46.626 | 163 | 80 | 4 | 4 | 163 | 8 | 166 | 1.13e-38 | 135 |
| MS.gene37512.t1 | AT1G72190 | 26.300 | 327 | 200 | 10 | 12 | 316 | 46 | 353 | 1.13e-28 | 114 |
| MS.gene37512.t1 | AT5G28310 | 37.113 | 194 | 70 | 3 | 142 | 334 | 91 | 233 | 7.15e-28 | 108 |
| MS.gene37512.t1 | AT1G68010 | 27.711 | 249 | 156 | 3 | 94 | 320 | 94 | 340 | 1.63e-20 | 91.7 |
| MS.gene37512.t1 | AT1G68010 | 28.077 | 260 | 162 | 4 | 94 | 330 | 94 | 351 | 2.09e-20 | 91.3 |
| MS.gene37512.t1 | AT1G68010 | 27.600 | 250 | 156 | 4 | 94 | 320 | 94 | 341 | 6.93e-19 | 87.0 |
| MS.gene37512.t1 | AT1G17745 | 25.681 | 257 | 173 | 7 | 67 | 313 | 125 | 373 | 7.83e-18 | 84.7 |
| MS.gene37512.t1 | AT3G19480 | 28.906 | 256 | 166 | 8 | 67 | 313 | 89 | 337 | 2.01e-17 | 83.6 |
| MS.gene37512.t1 | AT5G14780 | 24.579 | 297 | 193 | 8 | 48 | 332 | 67 | 344 | 3.38e-17 | 82.0 |
| MS.gene37512.t1 | AT5G14780 | 24.579 | 297 | 193 | 8 | 48 | 332 | 79 | 356 | 3.50e-17 | 82.0 |
| MS.gene37512.t1 | AT4G34200 | 27.350 | 234 | 157 | 5 | 87 | 313 | 125 | 352 | 3.89e-17 | 82.8 |
| MS.gene37512.t1 | AT5G14780 | 24.579 | 297 | 193 | 8 | 48 | 332 | 93 | 370 | 4.82e-17 | 81.6 |
| MS.gene37512.t1 | AT1G17745 | 24.014 | 279 | 177 | 7 | 67 | 313 | 125 | 400 | 7.41e-15 | 75.9 |
Find 89 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAACACTTGAATAATA+AGG | 0.241868 | 8.3:-60314653 | None:intergenic |
| TTCTGAAGATGTTGCTGATA+TGG | 0.254694 | 8.3:+60313775 | MS.gene37512:CDS |
| GTGTCGGCGTCGCGGAATTC+AGG | 0.278412 | 8.3:+60313730 | MS.gene37512:CDS |
| TTGAAGGATGAAGGAGAATT+CGG | 0.324930 | 8.3:-60313495 | None:intergenic |
| TCCAATGAAAAGAACTCTTT+AGG | 0.329921 | 8.3:-60314896 | None:intergenic |
| GGACCATGAAGGAATACTTT+TGG | 0.336708 | 8.3:-60313470 | None:intergenic |
| TGCAGACAAGACGGAGGGCG+GGG | 0.358454 | 8.3:-60313670 | None:intergenic |
| GGTGGAATCATAGTGAATAT+TGG | 0.359465 | 8.3:+60314773 | MS.gene37512:CDS |
| TGATATGGCTGTGGCTTTGT+TGG | 0.364353 | 8.3:+60313790 | MS.gene37512:CDS |
| GAGAAGAAGGGTTTAAGATA+TGG | 0.364640 | 8.3:-60313538 | None:intergenic |
| TATGAGAAGGATTGGGTTGA+AGG | 0.369402 | 8.3:-60313511 | None:intergenic |
| TGACTGGTGTTTCAGATATC+AGG | 0.370285 | 8.3:+60314512 | MS.gene37512:intron |
| TGAAGGATGAAGGAGAATTC+GGG | 0.378466 | 8.3:-60313494 | None:intergenic |
| CTCCCAAAAGTATTCCTTCA+TGG | 0.378697 | 8.3:+60313467 | MS.gene37512:CDS |
| AAAGATTGGAATTGTTGGTC+TGG | 0.384913 | 8.3:+60314538 | MS.gene37512:CDS |
| TGTAACTTCTGAGTCTTTGA+TGG | 0.385938 | 8.3:+60314949 | MS.gene37512:CDS |
| ATGGAAATTATGAGAAGGAT+TGG | 0.395978 | 8.3:-60313519 | None:intergenic |
| TGGAGAGGAGGAAGAGAAGA+AGG | 0.406600 | 8.3:-60313551 | None:intergenic |
| GACGGAGGGCGGGGAGAAGT+TGG | 0.409298 | 8.3:-60313661 | None:intergenic |
| GGAATTCAGGTTGCCGGAGC+TGG | 0.410518 | 8.3:+60313743 | MS.gene37512:CDS |
| GGAGGCATGGTGAGGATTGA+GGG | 0.414126 | 8.3:-60313585 | None:intergenic |
| AGCTTCAGCCGGCTGCATCT+TGG | 0.416408 | 8.3:+60313861 | MS.gene37512:CDS |
| GTGCAGACAAGACGGAGGGC+GGG | 0.419214 | 8.3:-60313671 | None:intergenic |
| CTAAAACACTTGAATAATAA+GGG | 0.423403 | 8.3:-60314652 | None:intergenic |
| TGTTGACAATGTGTCTTGTT+TGG | 0.423468 | 8.3:-60314724 | None:intergenic |
| TGACATTGGAGGTGCTGGTT+TGG | 0.429754 | 8.3:+60314847 | MS.gene37512:CDS |
| GGTGCAGACAAGACGGAGGG+CGG | 0.429921 | 8.3:-60313672 | None:intergenic |
| TAATAAGGGTATGAAACTAA+TGG | 0.430439 | 8.3:-60314638 | None:intergenic |
| AAGAACTCTTTAGGAACATC+AGG | 0.435138 | 8.3:-60314887 | None:intergenic |
| AGGTGCTCTCATTGATGAAA+AGG | 0.435320 | 8.3:+60314799 | MS.gene37512:CDS |
| TTGGAGGACATCGGCGTTGA+CGG | 0.446845 | 8.3:-60313642 | None:intergenic |
| AGGAGGCATGGTGAGGATTG+AGG | 0.447068 | 8.3:-60313586 | None:intergenic |
| AGGATTGGGTTGAAGGATGA+AGG | 0.454481 | 8.3:-60313504 | None:intergenic |
| AAGATTGGAATTGTTGGTCT+GGG | 0.454839 | 8.3:+60314539 | MS.gene37512:CDS |
| ATTGTTGGTCTGGGAAGAAT+TGG | 0.456287 | 8.3:+60314548 | MS.gene37512:CDS |
| CAAAGAAGTGATGTTGGCAT+TGG | 0.464031 | 8.3:+60314745 | MS.gene37512:CDS |
| GAGATCAATATGATCAGTTC+CGG | 0.464182 | 8.3:-60313702 | None:intergenic |
| GAAGCTGTCTTCTCAAGAAC+CGG | 0.468027 | 8.3:-60313844 | None:intergenic |
| TATGATCAGTTCCGGCGCTA+GGG | 0.486905 | 8.3:-60313694 | None:intergenic |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.489565 | 8.3:+60313737 | MS.gene37512:CDS |
| GATGATGACATTGGAGGTGC+TGG | 0.490086 | 8.3:+60314842 | MS.gene37512:CDS |
| AAAGAAGTGATGTTGGCATT+GGG | 0.492213 | 8.3:+60314746 | MS.gene37512:CDS |
| ATATGATCAGTTCCGGCGCT+AGG | 0.495157 | 8.3:-60313695 | None:intergenic |
| GTAACTTCTGAGTCTTTGAT+GGG | 0.496900 | 8.3:+60314950 | MS.gene37512:CDS |
| GCATAATATCATACAACTCT+CGG | 0.500345 | 8.3:+60314606 | MS.gene37512:CDS |
| TGGAAATTATGAGAAGGATT+GGG | 0.500624 | 8.3:-60313518 | None:intergenic |
| GACAATAGCGGCAATGGAGG+AGG | 0.501959 | 8.3:-60313603 | None:intergenic |
| GTGGCTTTGTTGGTTGATGT+TGG | 0.505017 | 8.3:+60313800 | MS.gene37512:CDS |
| GATGGGTATCTGCCAACTTG+TGG | 0.511629 | 8.3:+60314967 | MS.gene37512:CDS |
| GAGGATTGAGGGATAAGAAT+TGG | 0.512540 | 8.3:-60313574 | None:intergenic |
| GATAAGAATTGGTGGAGAGG+AGG | 0.525383 | 8.3:-60313563 | None:intergenic |
| GGAGGGCGGGGAGAAGTTGG+AGG | 0.527008 | 8.3:-60313658 | None:intergenic |
| GCCGCTATTGTCTGTATCGT+CGG | 0.532819 | 8.3:+60313614 | MS.gene37512:CDS |
| GGAGAGGAGGAAGAGAAGAA+GGG | 0.533882 | 8.3:-60313550 | None:intergenic |
| CTTTGTTGGTTGATGTTGGT+AGG | 0.535021 | 8.3:+60313804 | MS.gene37512:CDS |
| GGAAGATTTCAGCTGCGGAC+CGG | 0.546304 | 8.3:+60313825 | MS.gene37512:CDS |
| GGAAAATTCCAAGATGCAGC+CGG | 0.551164 | 8.3:-60313869 | None:intergenic |
| GATACAGACAATAGCGGCAA+TGG | 0.551338 | 8.3:-60313609 | None:intergenic |
| ATCATAGTGAATATTGGAAG+AGG | 0.554439 | 8.3:+60314779 | MS.gene37512:CDS |
| CTTGTCTGCACCCCTAGCGC+CGG | 0.554679 | 8.3:+60313683 | MS.gene37512:CDS |
| GTGATGTTGGCATTGGGAAA+AGG | 0.560130 | 8.3:+60314752 | MS.gene37512:CDS |
| CTTGAGAAGACAGCTTCAGC+CGG | 0.561720 | 8.3:+60313850 | MS.gene37512:CDS |
| AAGATATGGAAATTATGAGA+AGG | 0.561816 | 8.3:-60313524 | None:intergenic |
| TGTTTGATTGATGATGACAT+TGG | 0.564052 | 8.3:+60314833 | MS.gene37512:CDS |
| TGTCAACAAAGAAGTGATGT+TGG | 0.567200 | 8.3:+60314739 | MS.gene37512:CDS |
| CGCTAGGGGTGCAGACAAGA+CGG | 0.572300 | 8.3:-60313679 | None:intergenic |
| GATTGAGGGATAAGAATTGG+TGG | 0.574137 | 8.3:-60313571 | None:intergenic |
| AGGGATAAGAATTGGTGGAG+AGG | 0.577295 | 8.3:-60313566 | None:intergenic |
| AGATGTTGCTGATATGGCTG+TGG | 0.577311 | 8.3:+60313781 | MS.gene37512:CDS |
| CAACAGCTGCATGTGGTGAA+AGG | 0.581694 | 8.3:-60314928 | None:intergenic |
| CTCGTTGAGTGTCGGCGTCG+CGG | 0.582418 | 8.3:+60313722 | MS.gene37512:CDS |
| ATATTGATCTCGTTGAGTGT+CGG | 0.582498 | 8.3:+60313714 | MS.gene37512:CDS |
| ATGTTGGCATTGGGAAAAGG+TGG | 0.590340 | 8.3:+60314755 | MS.gene37512:CDS |
| ATGATCAGTTCCGGCGCTAG+GGG | 0.590591 | 8.3:-60313693 | None:intergenic |
| ACAGACAATAGCGGCAATGG+AGG | 0.591634 | 8.3:-60313606 | None:intergenic |
| AGAATTCGGGTGGACCATGA+AGG | 0.593598 | 8.3:-60313481 | None:intergenic |
| GGGGAGAAGTTGGAGGACAT+CGG | 0.595784 | 8.3:-60313651 | None:intergenic |
| TAGCGGCAATGGAGGAGGCA+TGG | 0.602465 | 8.3:-60313598 | None:intergenic |
| TTGATTGATGATGACATTGG+AGG | 0.623703 | 8.3:+60314836 | MS.gene37512:CDS |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.3:-60313890 | None:intergenic |
| TGGTAGGAAGATTTCAGCTG+CGG | 0.633217 | 8.3:+60313820 | MS.gene37512:CDS |
| AGGGGTGCAGACAAGACGGA+GGG | 0.634533 | 8.3:-60313675 | None:intergenic |
| ACAACAGAGAATAAGTACAT+TGG | 0.652407 | 8.3:-60314690 | None:intergenic |
| GAAGTTACAACAGCTGCATG+TGG | 0.657680 | 8.3:-60314935 | None:intergenic |
| GCAATGGAGGAGGCATGGTG+AGG | 0.666359 | 8.3:-60313593 | None:intergenic |
| AGGATGAAGGAGAATTCGGG+TGG | 0.673115 | 8.3:-60313491 | None:intergenic |
| TTGGCATAGAAGTCGCAAAG+AGG | 0.681463 | 8.3:+60314567 | MS.gene37512:CDS |
| TAGGGGTGCAGACAAGACGG+AGG | 0.685169 | 8.3:-60313676 | None:intergenic |
| GCCGACGATACAGACAATAG+CGG | 0.751275 | 8.3:-60313615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAGTAGTAATAATTT+AGG | + | chr8.3:60313976-60313995 | MS.gene37512:intron | 10.0% |
| !! | ATTGTAAAAATAAAATATTC+AGG | - | chr8.3:60314037-60314056 | None:intergenic | 10.0% |
| !! | AATAAATTGAGTAAAGTTTA+TGG | + | chr8.3:60314467-60314486 | MS.gene37512:intron | 15.0% |
| !! | ATAAATTGAGTAAAGTTTAT+GGG | + | chr8.3:60314468-60314487 | MS.gene37512:intron | 15.0% |
| !!! | TAGATTTTTTGGAATTAATT+AGG | - | chr8.3:60314430-60314449 | None:intergenic | 15.0% |
| !! | CTAAAACACTTGAATAATAA+GGG | - | chr8.3:60314655-60314674 | None:intergenic | 20.0% |
| !! | GATATATAAGAGTAATATGT+TGG | - | chr8.3:60314206-60314225 | None:intergenic | 20.0% |
| !!! | AAAGTATACACTAGATTTTT+TGG | - | chr8.3:60314441-60314460 | None:intergenic | 20.0% |
| !!! | TCTAAAACACTTGAATAATA+AGG | - | chr8.3:60314656-60314675 | None:intergenic | 20.0% |
| ! | AAGATATGGAAATTATGAGA+AGG | - | chr8.3:60313527-60313546 | None:intergenic | 25.0% |
| ! | AGTTATTCAACTTTCTTCTT+TGG | - | chr8.3:60314357-60314376 | None:intergenic | 25.0% |
| ! | GTTATTCAACTTTCTTCTTT+GGG | - | chr8.3:60314356-60314375 | None:intergenic | 25.0% |
| !! | TAATAAGGGTATGAAACTAA+TGG | - | chr8.3:60314641-60314660 | None:intergenic | 25.0% |
| !! | TGGGAGATTATTATTTTCTT+GGG | - | chr8.3:60313453-60313472 | None:intergenic | 25.0% |
| !! | TTGGGAGATTATTATTTTCT+TGG | - | chr8.3:60313454-60313473 | None:intergenic | 25.0% |
| ACAACAGAGAATAAGTACAT+TGG | - | chr8.3:60314693-60314712 | None:intergenic | 30.0% | |
| ATCATAGTGAATATTGGAAG+AGG | + | chr8.3:60314779-60314798 | MS.gene37512:CDS | 30.0% | |
| ATGGAAATTATGAGAAGGAT+TGG | - | chr8.3:60313522-60313541 | None:intergenic | 30.0% | |
| CAGATATCAGGAAAAAAGAT+TGG | + | chr8.3:60314524-60314543 | MS.gene37512:intron | 30.0% | |
| GCATAATATCATACAACTCT+CGG | + | chr8.3:60314606-60314625 | MS.gene37512:CDS | 30.0% | |
| GGAAAAAAGATTGGAATTGT+TGG | + | chr8.3:60314533-60314552 | MS.gene37512:CDS | 30.0% | |
| GTCAATAAATAAACACGACT+TGG | - | chr8.3:60314077-60314096 | None:intergenic | 30.0% | |
| TAGGTGATACACAAGATATT+CGG | + | chr8.3:60313995-60314014 | MS.gene37512:intron | 30.0% | |
| TCCAATGAAAAGAACTCTTT+AGG | - | chr8.3:60314899-60314918 | None:intergenic | 30.0% | |
| TGGAAATTATGAGAAGGATT+GGG | - | chr8.3:60313521-60313540 | None:intergenic | 30.0% | |
| ! | TCAAATTTTGTTCCACAAGT+TGG | - | chr8.3:60314982-60315001 | None:intergenic | 30.0% |
| ! | TCCTAAAGAGTTCTTTTCAT+TGG | + | chr8.3:60314895-60314914 | MS.gene37512:CDS | 30.0% |
| !! | TGTTTGATTGATGATGACAT+TGG | + | chr8.3:60314833-60314852 | MS.gene37512:CDS | 30.0% |
| AAAGAAGTGATGTTGGCATT+GGG | + | chr8.3:60314746-60314765 | MS.gene37512:CDS | 35.0% | |
| AAAGATTGGAATTGTTGGTC+TGG | + | chr8.3:60314538-60314557 | MS.gene37512:CDS | 35.0% | |
| AGAAAAAAGATTTCCAGCTC+CGG | - | chr8.3:60313759-60313778 | None:intergenic | 35.0% | |
| ATATTGATCTCGTTGAGTGT+CGG | + | chr8.3:60313714-60313733 | MS.gene37512:CDS | 35.0% | |
| GAGATCAATATGATCAGTTC+CGG | - | chr8.3:60313705-60313724 | None:intergenic | 35.0% | |
| GGTGGAATCATAGTGAATAT+TGG | + | chr8.3:60314773-60314792 | MS.gene37512:CDS | 35.0% | |
| GTAACTTCTGAGTCTTTGAT+GGG | + | chr8.3:60314950-60314969 | MS.gene37512:CDS | 35.0% | |
| TGTAACTTCTGAGTCTTTGA+TGG | + | chr8.3:60314949-60314968 | MS.gene37512:CDS | 35.0% | |
| TGTCAACAAAGAAGTGATGT+TGG | + | chr8.3:60314739-60314758 | MS.gene37512:CDS | 35.0% | |
| TTGAAGGATGAAGGAGAATT+CGG | - | chr8.3:60313498-60313517 | None:intergenic | 35.0% | |
| TTGCTTCACATGATACAGAT+TGG | + | chr8.3:60314126-60314145 | MS.gene37512:intron | 35.0% | |
| ! | AAGAACTCTTTAGGAACATC+AGG | - | chr8.3:60314890-60314909 | None:intergenic | 35.0% |
| ! | AAGATTGGAATTGTTGGTCT+GGG | + | chr8.3:60314539-60314558 | MS.gene37512:CDS | 35.0% |
| ! | GACCATGAAGGAATACTTTT+GGG | - | chr8.3:60313472-60313491 | None:intergenic | 35.0% |
| ! | GAGAAGAAGGGTTTAAGATA+TGG | - | chr8.3:60313541-60313560 | None:intergenic | 35.0% |
| ! | TGTTGACAATGTGTCTTGTT+TGG | - | chr8.3:60314727-60314746 | None:intergenic | 35.0% |
| ! | TTCTGAAGATGTTGCTGATA+TGG | + | chr8.3:60313775-60313794 | MS.gene37512:CDS | 35.0% |
| !! | TTGATTGATGATGACATTGG+AGG | + | chr8.3:60314836-60314855 | MS.gene37512:CDS | 35.0% |
| !!! | GAATTTTCCACTTGGTTCTA+AGG | + | chr8.3:60313883-60313902 | MS.gene37512:CDS | 35.0% |
| AGGTGCTCTCATTGATGAAA+AGG | + | chr8.3:60314799-60314818 | MS.gene37512:CDS | 40.0% | |
| CAAAGAAGTGATGTTGGCAT+TGG | + | chr8.3:60314745-60314764 | MS.gene37512:CDS | 40.0% | |
| GAAACACCAGTCACATGTTT+AGG | - | chr8.3:60314505-60314524 | None:intergenic | 40.0% | |
| GAGGATTGAGGGATAAGAAT+TGG | - | chr8.3:60313577-60313596 | None:intergenic | 40.0% | |
| GATTGAGGGATAAGAATTGG+TGG | - | chr8.3:60313574-60313593 | None:intergenic | 40.0% | |
| TGAAGGATGAAGGAGAATTC+GGG | - | chr8.3:60313497-60313516 | None:intergenic | 40.0% | |
| TGACTGGTGTTTCAGATATC+AGG | + | chr8.3:60314512-60314531 | MS.gene37512:intron | 40.0% | |
| TGATTGCCTAAACATGTGAC+TGG | + | chr8.3:60314496-60314515 | MS.gene37512:intron | 40.0% | |
| ! | ATTGTTGGTCTGGGAAGAAT+TGG | + | chr8.3:60314548-60314567 | MS.gene37512:CDS | 40.0% |
| ! | CTGACTTGCATTAGAAGTCT+TGG | - | chr8.3:60314303-60314322 | None:intergenic | 40.0% |
| ! | CTTTGTTGGTTGATGTTGGT+AGG | + | chr8.3:60313804-60313823 | MS.gene37512:CDS | 40.0% |
| ! | GCATCTTGGAATTTTCCACT+TGG | + | chr8.3:60313875-60313894 | MS.gene37512:CDS | 40.0% |
| ! | GGACCATGAAGGAATACTTT+TGG | - | chr8.3:60313473-60313492 | None:intergenic | 40.0% |
| !! | CTCCCAAAAGTATTCCTTCA+TGG | + | chr8.3:60313467-60313486 | MS.gene37512:CDS | 40.0% |
| !! | TATGAGAAGGATTGGGTTGA+AGG | - | chr8.3:60313514-60313533 | None:intergenic | 40.0% |
| AGATGTTGCTGATATGGCTG+TGG | + | chr8.3:60313781-60313800 | MS.gene37512:CDS | 45.0% | |
| AGGGATAAGAATTGGTGGAG+AGG | - | chr8.3:60313569-60313588 | None:intergenic | 45.0% | |
| GAAGCTGTCTTCTCAAGAAC+CGG | - | chr8.3:60313847-60313866 | None:intergenic | 45.0% | |
| GAAGTTACAACAGCTGCATG+TGG | - | chr8.3:60314938-60314957 | None:intergenic | 45.0% | |
| GATAAGAATTGGTGGAGAGG+AGG | - | chr8.3:60313566-60313585 | None:intergenic | 45.0% | |
| GATACAGACAATAGCGGCAA+TGG | - | chr8.3:60313612-60313631 | None:intergenic | 45.0% | |
| GGAAAATTCCAAGATGCAGC+CGG | - | chr8.3:60313872-60313891 | None:intergenic | 45.0% | |
| TGGTAGGAAGATTTCAGCTG+CGG | + | chr8.3:60313820-60313839 | MS.gene37512:CDS | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.3:60313893-60313912 | None:intergenic | 45.0% | |
| TTGGCATAGAAGTCGCAAAG+AGG | + | chr8.3:60314567-60314586 | MS.gene37512:CDS | 45.0% | |
| ! | ATGTTGGCATTGGGAAAAGG+TGG | + | chr8.3:60314755-60314774 | MS.gene37512:CDS | 45.0% |
| ! | GTGATGTTGGCATTGGGAAA+AGG | + | chr8.3:60314752-60314771 | MS.gene37512:CDS | 45.0% |
| !! | AGGATTGGGTTGAAGGATGA+AGG | - | chr8.3:60313507-60313526 | None:intergenic | 45.0% |
| !! | GTGGCTTTGTTGGTTGATGT+TGG | + | chr8.3:60313800-60313819 | MS.gene37512:CDS | 45.0% |
| !! | TGATATGGCTGTGGCTTTGT+TGG | + | chr8.3:60313790-60313809 | MS.gene37512:CDS | 45.0% |
| ACAGACAATAGCGGCAATGG+AGG | - | chr8.3:60313609-60313628 | None:intergenic | 50.0% | |
| AGAATTCGGGTGGACCATGA+AGG | - | chr8.3:60313484-60313503 | None:intergenic | 50.0% | |
| AGGATGAAGGAGAATTCGGG+TGG | - | chr8.3:60313494-60313513 | None:intergenic | 50.0% | |
| ATATGATCAGTTCCGGCGCT+AGG | - | chr8.3:60313698-60313717 | None:intergenic | 50.0% | |
| CAACAGCTGCATGTGGTGAA+AGG | - | chr8.3:60314931-60314950 | None:intergenic | 50.0% | |
| CTTGAGAAGACAGCTTCAGC+CGG | + | chr8.3:60313850-60313869 | MS.gene37512:CDS | 50.0% | |
| GATGGGTATCTGCCAACTTG+TGG | + | chr8.3:60314967-60314986 | MS.gene37512:CDS | 50.0% | |
| GCCGACGATACAGACAATAG+CGG | - | chr8.3:60313618-60313637 | None:intergenic | 50.0% | |
| GCCGCTATTGTCTGTATCGT+CGG | + | chr8.3:60313614-60313633 | MS.gene37512:CDS | 50.0% | |
| GGAGAGGAGGAAGAGAAGAA+GGG | - | chr8.3:60313553-60313572 | None:intergenic | 50.0% | |
| TATGATCAGTTCCGGCGCTA+GGG | - | chr8.3:60313697-60313716 | None:intergenic | 50.0% | |
| TGGAGAGGAGGAAGAGAAGA+AGG | - | chr8.3:60313554-60313573 | None:intergenic | 50.0% | |
| ! | GATGATGACATTGGAGGTGC+TGG | + | chr8.3:60314842-60314861 | MS.gene37512:CDS | 50.0% |
| !! | TGACATTGGAGGTGCTGGTT+TGG | + | chr8.3:60314847-60314866 | MS.gene37512:CDS | 50.0% |
| ATGATCAGTTCCGGCGCTAG+GGG | - | chr8.3:60313696-60313715 | None:intergenic | 55.0% | |
| GACAATAGCGGCAATGGAGG+AGG | - | chr8.3:60313606-60313625 | None:intergenic | 55.0% | |
| GGAAGATTTCAGCTGCGGAC+CGG | + | chr8.3:60313825-60313844 | MS.gene37512:CDS | 55.0% | |
| GGGGAGAAGTTGGAGGACAT+CGG | - | chr8.3:60313654-60313673 | None:intergenic | 55.0% | |
| ! | AGGAGGCATGGTGAGGATTG+AGG | - | chr8.3:60313589-60313608 | None:intergenic | 55.0% |
| ! | GGAGGCATGGTGAGGATTGA+GGG | - | chr8.3:60313588-60313607 | None:intergenic | 55.0% |
| ! | TTGGAGGACATCGGCGTTGA+CGG | - | chr8.3:60313645-60313664 | None:intergenic | 55.0% |
| AGCTTCAGCCGGCTGCATCT+TGG | + | chr8.3:60313861-60313880 | MS.gene37512:CDS | 60.0% | |
| TAGCGGCAATGGAGGAGGCA+TGG | - | chr8.3:60313601-60313620 | None:intergenic | 60.0% | |
| ! | AGGGGTGCAGACAAGACGGA+GGG | - | chr8.3:60313678-60313697 | None:intergenic | 60.0% |
| ! | CGCTAGGGGTGCAGACAAGA+CGG | - | chr8.3:60313682-60313701 | None:intergenic | 60.0% |
| ! | GCAATGGAGGAGGCATGGTG+AGG | - | chr8.3:60313596-60313615 | None:intergenic | 60.0% |
| ! | TAGGGGTGCAGACAAGACGG+AGG | - | chr8.3:60313679-60313698 | None:intergenic | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.3:60313737-60313756 | MS.gene37512:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGAGC+TGG | + | chr8.3:60313743-60313762 | MS.gene37512:CDS | 60.0% |
| CTTGTCTGCACCCCTAGCGC+CGG | + | chr8.3:60313683-60313702 | MS.gene37512:CDS | 65.0% | |
| GGTGCAGACAAGACGGAGGG+CGG | - | chr8.3:60313675-60313694 | None:intergenic | 65.0% | |
| GTGCAGACAAGACGGAGGGC+GGG | - | chr8.3:60313674-60313693 | None:intergenic | 65.0% | |
| TGCAGACAAGACGGAGGGCG+GGG | - | chr8.3:60313673-60313692 | None:intergenic | 65.0% | |
| ! | GTGTCGGCGTCGCGGAATTC+AGG | + | chr8.3:60313730-60313749 | MS.gene37512:CDS | 65.0% |
| !! | CTCGTTGAGTGTCGGCGTCG+CGG | + | chr8.3:60313722-60313741 | MS.gene37512:CDS | 65.0% |
| GACGGAGGGCGGGGAGAAGT+TGG | - | chr8.3:60313664-60313683 | None:intergenic | 70.0% | |
| GGAGGGCGGGGAGAAGTTGG+AGG | - | chr8.3:60313661-60313680 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 60313419 | 60315045 | 60313419 | ID=MS.gene37512 |
| chr8.3 | mRNA | 60313419 | 60315045 | 60313419 | ID=MS.gene37512.t1;Parent=MS.gene37512 |
| chr8.3 | exon | 60313419 | 60313904 | 60313419 | ID=MS.gene37512.t1.exon1;Parent=MS.gene37512.t1 |
| chr8.3 | CDS | 60313419 | 60313904 | 60313419 | ID=cds.MS.gene37512.t1;Parent=MS.gene37512.t1 |
| chr8.3 | exon | 60314527 | 60315045 | 60314527 | ID=MS.gene37512.t1.exon2;Parent=MS.gene37512.t1 |
| chr8.3 | CDS | 60314527 | 60315045 | 60314527 | ID=cds.MS.gene37512.t1;Parent=MS.gene37512.t1 |
| Gene Sequence |
| Protein sequence |
