Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37515.t1 | XP_013444993.1 | 93.9 | 326 | 20 | 0 | 1 | 326 | 1 | 326 | 5.80E-171 | 610.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37515.t1 | Q9LE33 | 48.5 | 324 | 154 | 4 | 6 | 324 | 7 | 322 | 2.8e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37515.t1 | A0A072TQA0 | 93.9 | 326 | 20 | 0 | 1 | 326 | 1 | 326 | 4.2e-171 | 610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24945 | MS.gene37515 | PPI |
| MS.gene07262 | MS.gene37515 | PPI |
| MS.gene24946 | MS.gene37515 | PPI |
| MS.gene33396 | MS.gene37515 | PPI |
| MS.gene068259 | MS.gene37515 | PPI |
| MS.gene33394 | MS.gene37515 | PPI |
| MS.gene062351 | MS.gene37515 | PPI |
| MS.gene37513 | MS.gene37515 | PPI |
| MS.gene20783 | MS.gene37515 | PPI |
| MS.gene068263 | MS.gene37515 | PPI |
| MS.gene74946 | MS.gene37515 | PPI |
| MS.gene33395 | MS.gene37515 | PPI |
| MS.gene76198 | MS.gene37515 | PPI |
| MS.gene065032 | MS.gene37515 | PPI |
| MS.gene068262 | MS.gene37515 | PPI |
| MS.gene030057 | MS.gene37515 | PPI |
| MS.gene20834 | MS.gene37515 | PPI |
| MS.gene029300 | MS.gene37515 | PPI |
| MS.gene24947 | MS.gene37515 | PPI |
| MS.gene017129 | MS.gene37515 | PPI |
| MS.gene038363 | MS.gene37515 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37515.t1 | MTR_8g033390 | 93.865 | 326 | 20 | 0 | 1 | 326 | 1 | 326 | 0.0 | 632 |
| MS.gene37515.t1 | MTR_8g033400 | 58.125 | 320 | 132 | 2 | 3 | 322 | 15 | 332 | 4.21e-134 | 384 |
| MS.gene37515.t1 | MTR_8g033410 | 57.233 | 318 | 135 | 1 | 5 | 322 | 9 | 325 | 1.31e-132 | 380 |
| MS.gene37515.t1 | MTR_7g075830 | 49.671 | 304 | 136 | 6 | 36 | 324 | 15 | 316 | 1.08e-95 | 286 |
| MS.gene37515.t1 | MTR_4g013100 | 45.745 | 282 | 150 | 2 | 41 | 322 | 35 | 313 | 4.87e-86 | 261 |
| MS.gene37515.t1 | MTR_4g013090 | 42.903 | 310 | 157 | 5 | 20 | 322 | 16 | 312 | 6.98e-86 | 261 |
| MS.gene37515.t1 | MTR_4g012960 | 43.772 | 281 | 150 | 2 | 42 | 322 | 37 | 309 | 1.03e-85 | 260 |
| MS.gene37515.t1 | MTR_2g101840 | 45.614 | 285 | 149 | 4 | 39 | 322 | 34 | 313 | 1.14e-75 | 235 |
| MS.gene37515.t1 | MTR_4g013135 | 43.972 | 282 | 155 | 2 | 41 | 322 | 34 | 312 | 4.61e-71 | 223 |
| MS.gene37515.t1 | MTR_3g005970 | 27.007 | 274 | 175 | 6 | 65 | 318 | 107 | 375 | 3.28e-27 | 110 |
| MS.gene37515.t1 | MTR_4g005880 | 29.434 | 265 | 168 | 6 | 76 | 326 | 152 | 411 | 5.09e-24 | 102 |
| MS.gene37515.t1 | MTR_1g107480 | 28.302 | 265 | 171 | 6 | 76 | 326 | 119 | 378 | 1.05e-22 | 99.0 |
| MS.gene37515.t1 | MTR_1g112510 | 27.344 | 256 | 158 | 6 | 83 | 312 | 94 | 347 | 7.38e-22 | 95.5 |
| MS.gene37515.t1 | MTR_6g007170 | 26.255 | 259 | 176 | 4 | 65 | 313 | 111 | 364 | 3.25e-21 | 93.6 |
| MS.gene37515.t1 | MTR_7g078990 | 26.201 | 229 | 154 | 4 | 98 | 315 | 97 | 321 | 3.78e-16 | 79.7 |
| MS.gene37515.t1 | MTR_6g007175 | 24.409 | 254 | 168 | 4 | 65 | 313 | 80 | 314 | 4.94e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37515.t1 | AT2G45630 | 48.930 | 327 | 152 | 5 | 3 | 322 | 19 | 337 | 5.08e-106 | 313 |
| MS.gene37515.t1 | AT1G12550 | 48.457 | 324 | 154 | 4 | 6 | 324 | 7 | 322 | 5.43e-104 | 308 |
| MS.gene37515.t1 | AT1G79870 | 45.070 | 284 | 153 | 2 | 39 | 322 | 32 | 312 | 1.20e-79 | 245 |
| MS.gene37515.t1 | AT1G79870 | 41.197 | 284 | 145 | 2 | 39 | 322 | 32 | 293 | 8.67e-69 | 217 |
| MS.gene37515.t1 | AT2G45630 | 40.645 | 155 | 82 | 3 | 3 | 155 | 19 | 165 | 4.64e-30 | 113 |
| MS.gene37515.t1 | AT1G72190 | 26.603 | 312 | 194 | 9 | 16 | 306 | 57 | 354 | 2.95e-27 | 110 |
| MS.gene37515.t1 | AT1G17745 | 28.322 | 286 | 185 | 8 | 56 | 326 | 125 | 405 | 1.52e-25 | 107 |
| MS.gene37515.t1 | AT4G34200 | 29.924 | 264 | 168 | 6 | 76 | 326 | 125 | 384 | 1.03e-24 | 105 |
| MS.gene37515.t1 | AT5G28310 | 33.679 | 193 | 76 | 3 | 131 | 322 | 91 | 232 | 7.12e-24 | 98.2 |
| MS.gene37515.t1 | AT3G19480 | 30.620 | 258 | 160 | 7 | 76 | 319 | 110 | 362 | 1.04e-22 | 99.0 |
| MS.gene37515.t1 | AT1G17745 | 26.045 | 311 | 187 | 8 | 56 | 326 | 125 | 432 | 6.91e-22 | 96.7 |
| MS.gene37515.t1 | AT5G14780 | 26.230 | 244 | 163 | 5 | 81 | 313 | 99 | 336 | 1.33e-21 | 94.4 |
| MS.gene37515.t1 | AT5G14780 | 26.230 | 244 | 163 | 5 | 81 | 313 | 111 | 348 | 1.33e-21 | 94.4 |
| MS.gene37515.t1 | AT5G14780 | 26.230 | 244 | 163 | 5 | 81 | 313 | 125 | 362 | 2.33e-21 | 94.0 |
| MS.gene37515.t1 | AT1G68010 | 27.132 | 258 | 167 | 3 | 83 | 319 | 94 | 351 | 1.36e-20 | 91.7 |
| MS.gene37515.t1 | AT1G68010 | 27.165 | 254 | 161 | 4 | 83 | 312 | 94 | 347 | 1.99e-20 | 91.3 |
| MS.gene37515.t1 | AT1G68010 | 27.059 | 255 | 161 | 5 | 83 | 312 | 94 | 348 | 7.69e-19 | 86.7 |
| MS.gene37515.t1 | AT1G01510 | 26.180 | 233 | 153 | 5 | 98 | 315 | 105 | 333 | 6.26e-14 | 72.8 |
Find 84 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATAGGCCTGAGGGTTT+GGG | 0.244134 | 8.3:-60359793 | None:intergenic |
| GGCCTGAGGGTTTGGGGTTT+AGG | 0.249977 | 8.3:-60359786 | None:intergenic |
| CAGTGATAGGCCTGAGGGTT+TGG | 0.272695 | 8.3:-60359794 | None:intergenic |
| GATCCTTGGGATTTCTCTCT+TGG | 0.275503 | 8.3:+60360120 | MS.gene37515:CDS |
| AGAAATTACTGGTGCTGGTT+TGG | 0.306096 | 8.3:+60362068 | MS.gene37515:CDS |
| TATAAACAACGATGTCCTTT+TGG | 0.311089 | 8.3:+60361960 | MS.gene37515:CDS |
| CTCGGAGGATGTGGCTGATA+TGG | 0.313435 | 8.3:+60360020 | MS.gene37515:CDS |
| CGTGTTGGAATTGTTGGATT+AGG | 0.316679 | 8.3:+60361760 | MS.gene37515:CDS |
| CGCGACGACGGCATTCATTC+AGG | 0.317773 | 8.3:-60359966 | None:intergenic |
| ATATGCGGCGCTACAGAATA+TGG | 0.320838 | 8.3:-60359863 | None:intergenic |
| ATTGTTGGATTAGGAAATAT+TGG | 0.323585 | 8.3:+60361769 | MS.gene37515:CDS |
| GGCGGGAACGTTCTGATCCT+TGG | 0.323599 | 8.3:+60360106 | MS.gene37515:CDS |
| ATGCCGTCGTCGCGGAATTC+AGG | 0.333564 | 8.3:+60359975 | MS.gene37515:CDS |
| GGCAAGCGTGTTGGAATTGT+TGG | 0.340794 | 8.3:+60361754 | MS.gene37515:CDS |
| ACAATTGATCAAGTGTTTGA+TGG | 0.359013 | 8.3:+60362041 | MS.gene37515:CDS |
| GGAATTCAGGTTGCCGGTGC+TGG | 0.372744 | 8.3:+60359988 | MS.gene37515:CDS |
| TGATATGGCAGTGGCGTTGC+TGG | 0.375670 | 8.3:+60360035 | MS.gene37515:CDS |
| AGGGTTTGGGGTTTAGGAAA+TGG | 0.379599 | 8.3:-60359780 | None:intergenic |
| GAAGGGTTTATTGTAAATGT+TGG | 0.390642 | 8.3:+60361994 | MS.gene37515:CDS |
| GGATTTCTCTCTTGGATACA+AGG | 0.406951 | 8.3:+60360128 | MS.gene37515:CDS |
| GCGGGAACGTTCTGATCCTT+GGG | 0.415107 | 8.3:+60360107 | MS.gene37515:CDS |
| GCATGAATTGTTGCAGTGAT+AGG | 0.422185 | 8.3:-60359807 | None:intergenic |
| TGTTTATAATGTGTCGTGTT+TGG | 0.423029 | 8.3:-60361945 | None:intergenic |
| AATATGGCGGGAATTGTTGA+TGG | 0.425691 | 8.3:-60359847 | None:intergenic |
| TCAATAACATTGGAATAGAA+AGG | 0.449303 | 8.3:-60361874 | None:intergenic |
| CGGGAATTGTTGATGGATTG+TGG | 0.457939 | 8.3:-60359840 | None:intergenic |
| TTTATTGTAAATGTTGGAAG+AGG | 0.472073 | 8.3:+60362000 | MS.gene37515:CDS |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.475850 | 8.3:+60359982 | MS.gene37515:CDS |
| GAAGGAGAAATTACTGGTGC+TGG | 0.482492 | 8.3:+60362063 | MS.gene37515:CDS |
| CAAGGCTGAGCGAGGGAAGA+AGG | 0.482908 | 8.3:-60359909 | None:intergenic |
| AACCTCACTGGACTAATTAG+TGG | 0.487818 | 8.3:-60362243 | None:intergenic |
| ACTAATTAGTCCAGTGAGGT+TGG | 0.495572 | 8.3:+60362245 | MS.gene37515:CDS |
| ATTGTAAATGTTGGAAGAGG+TGG | 0.499918 | 8.3:+60362003 | MS.gene37515:CDS |
| GCTATTTGCAATGGATAATG+TGG | 0.502917 | 8.3:+60362125 | MS.gene37515:CDS |
| TTCCTAAACCCCAAACCCTC+AGG | 0.505850 | 8.3:+60359784 | MS.gene37515:CDS |
| TGTTGATGGATTGTGGTTGT+CGG | 0.507968 | 8.3:-60359833 | None:intergenic |
| GTTGAGAACGTCGGTAGTGA+TGG | 0.509803 | 8.3:-60359887 | None:intergenic |
| TTGATGGAAGGAGAAATTAC+TGG | 0.511301 | 8.3:+60362057 | MS.gene37515:CDS |
| GTGATAGGCCTGAGGGTTTG+GGG | 0.518270 | 8.3:-60359792 | None:intergenic |
| CTTGTTGTCACCTCCAGTGT+TGG | 0.525756 | 8.3:+60359928 | MS.gene37515:CDS |
| ATCAAATGACTCGAGTCGCT+TGG | 0.527432 | 8.3:-60361803 | None:intergenic |
| AAGGTTGAGAAGCATGTTGG+TGG | 0.532888 | 8.3:-60359733 | None:intergenic |
| TGATGAAAAGCTATTTGCAA+TGG | 0.540745 | 8.3:+60362116 | MS.gene37515:CDS |
| AGTTACTCAACCAACCTCAC+TGG | 0.546856 | 8.3:-60362255 | None:intergenic |
| CAATAACATTGGAATAGAAA+GGG | 0.548282 | 8.3:-60361873 | None:intergenic |
| TTGATCAAGTGTTTGATGGA+AGG | 0.551467 | 8.3:+60362045 | MS.gene37515:CDS |
| TAGTTATCAGGCAAGCGTGT+TGG | 0.555079 | 8.3:+60361745 | MS.gene37515:intron |
| AGTTTGTGTGAACTTGTGGC+AGG | 0.560200 | 8.3:+60362192 | MS.gene37515:CDS |
| ATTCAGGTTGCCGGTGCTGG+AGG | 0.565610 | 8.3:+60359991 | MS.gene37515:CDS |
| GTGAGAGTAGAGTTGTTCGA+AGG | 0.566601 | 8.3:-60359752 | None:intergenic |
| AACTTCTAGCGACGCACTTG+TGG | 0.568567 | 8.3:+60361903 | MS.gene37515:CDS |
| TCGGTATGTGAGGACGCGGC+GGG | 0.573159 | 8.3:+60360089 | MS.gene37515:CDS |
| CATGAGGAAAGTGACGGTGG+CGG | 0.577174 | 8.3:+60360065 | MS.gene37515:CDS |
| ACAGTAAAAGCAGCTGAATG+TGG | 0.579189 | 8.3:-60362156 | None:intergenic |
| GGAAAGTGACGGTGGCGGAT+CGG | 0.583160 | 8.3:+60360070 | MS.gene37515:CDS |
| AGTTGCAAGATCAATAACAT+TGG | 0.588695 | 8.3:-60361884 | None:intergenic |
| AATGTGATCAGTTCCAACAC+TGG | 0.588992 | 8.3:-60359941 | None:intergenic |
| CAACCTGAATTCCGCGACGA+CGG | 0.589863 | 8.3:-60359978 | None:intergenic |
| CGGATCGGTATGTGAGGACG+CGG | 0.590619 | 8.3:+60360085 | MS.gene37515:CDS |
| CGAGAAAACTCCTCCAGCAC+CGG | 0.593259 | 8.3:-60360001 | None:intergenic |
| TGTTGCAGTGATAGGCCTGA+GGG | 0.610418 | 8.3:-60359799 | None:intergenic |
| GGTGACAACAAGGCTGAGCG+AGG | 0.616021 | 8.3:-60359917 | None:intergenic |
| AATGAGTTTGTGTGAACTTG+TGG | 0.617149 | 8.3:+60362188 | MS.gene37515:CDS |
| CGTTGCTGGTTGCTGTCATG+AGG | 0.623618 | 8.3:+60360049 | MS.gene37515:CDS |
| ATGTTGGTGGACCAAGAACA+AGG | 0.623624 | 8.3:-60359720 | None:intergenic |
| GCGGCGCTACAGAATATGGC+GGG | 0.624552 | 8.3:-60359859 | None:intergenic |
| ATCGGTATGTGAGGACGCGG+CGG | 0.625252 | 8.3:+60360088 | MS.gene37515:CDS |
| TGGATTAGGAAATATTGGCA+TGG | 0.625656 | 8.3:+60361774 | MS.gene37515:CDS |
| GGATGTGGCTGATATGGCAG+TGG | 0.625732 | 8.3:+60360026 | MS.gene37515:CDS |
| CAACACTGGAGGTGACAACA+AGG | 0.627680 | 8.3:-60359927 | None:intergenic |
| GTCGGTAGTGATGGAATATG+CGG | 0.639677 | 8.3:-60359878 | None:intergenic |
| TCGAAGGTTGAGAAGCATGT+TGG | 0.646752 | 8.3:-60359736 | None:intergenic |
| CTGAATGAATGCCGTCGTCG+CGG | 0.646790 | 8.3:+60359967 | MS.gene37515:CDS |
| TATCCAAGAGAGAAATCCCA+AGG | 0.651234 | 8.3:-60360123 | None:intergenic |
| GTGACAACAAGGCTGAGCGA+GGG | 0.665503 | 8.3:-60359916 | None:intergenic |
| CGGTGGCGGATCGGTATGTG+AGG | 0.669822 | 8.3:+60360079 | MS.gene37515:CDS |
| TTGTTGCAGTGATAGGCCTG+AGG | 0.677465 | 8.3:-60359800 | None:intergenic |
| GTTTGTGTGAACTTGTGGCA+GGG | 0.679026 | 8.3:+60362193 | MS.gene37515:CDS |
| GTGATCAGTTCCAACACTGG+AGG | 0.687001 | 8.3:-60359938 | None:intergenic |
| TGCTGTCATGAGGAAAGTGA+CGG | 0.687842 | 8.3:+60360059 | MS.gene37515:CDS |
| GGGAAGAAGGTTGAGAACGT+CGG | 0.695377 | 8.3:-60359896 | None:intergenic |
| TGCGGCGCTACAGAATATGG+CGG | 0.715711 | 8.3:-60359860 | None:intergenic |
| AGCCACTAATTAGTCCAGTG+AGG | 0.737963 | 8.3:+60362241 | MS.gene37515:CDS |
| TGTCATGAGGAAAGTGACGG+TGG | 0.768760 | 8.3:+60360062 | MS.gene37515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAAAAAATAATAAAATC+TGG | + | chr8.3:60360555-60360574 | MS.gene37515:intron | 10.0% |
| !! | TTGTATTTAATATTTGATTA+AGG | + | chr8.3:60360175-60360194 | MS.gene37515:intron | 10.0% |
| !!! | AACAAAAAATGATTTTTTTT+AGG | + | chr8.3:60360925-60360944 | MS.gene37515:intron | 10.0% |
| !!! | ACAAAAAATGATTTTTTTTA+GGG | + | chr8.3:60360926-60360945 | MS.gene37515:intron | 10.0% |
| !!! | ATTTAAGGTTTTTTATTTTA+CGG | + | chr8.3:60360854-60360873 | MS.gene37515:intron | 10.0% |
| !! | AAAAAATAAAGTAGTCAAAA+TGG | - | chr8.3:60360157-60360176 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8.3:60360746-60360765 | MS.gene37515:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8.3:60360765-60360746 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8.3:60360747-60360766 | MS.gene37515:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8.3:60360766-60360747 | None:intergenic | 15.0% |
| !! | ATTAAGGTTAAATATGTTAT+AGG | + | chr8.3:60360191-60360210 | MS.gene37515:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8.3:60360674-60360655 | None:intergenic | 15.0% |
| !!! | ACAAACTATAATAGTTTTTA+GGG | - | chr8.3:60360821-60360840 | None:intergenic | 15.0% |
| !!! | ATTTTATAAAGACTAGTTTT+AGG | - | chr8.3:60360897-60360916 | None:intergenic | 15.0% |
| !!! | TAAAAACTATTATAGTTTGT+AGG | + | chr8.3:60360821-60360840 | MS.gene37515:intron | 15.0% |
| !!! | TACAAACTATAATAGTTTTT+AGG | - | chr8.3:60360822-60360841 | None:intergenic | 15.0% |
| !!! | TTTTTTAGTCATAAAAACTA+GGG | + | chr8.3:60360260-60360279 | MS.gene37515:intron | 15.0% |
| !!! | TTTTTTTAGTCATAAAAACT+AGG | + | chr8.3:60360259-60360278 | MS.gene37515:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8.3:60360685-60360704 | MS.gene37515:intron | 20.0% |
| !! | AAATTTCAATATCTCATGAA+TGG | - | chr8.3:60361519-60361538 | None:intergenic | 20.0% |
| !! | AACATAGACAATAAAAAACA+TGG | + | chr8.3:60361227-60361246 | MS.gene37515:intron | 20.0% |
| !! | ATGAGATATTGAAATTTCAT+TGG | + | chr8.3:60361522-60361541 | MS.gene37515:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8.3:60360684-60360703 | MS.gene37515:intron | 20.0% |
| !! | TGTTTATATGAAGAAGAAAA+AGG | - | chr8.3:60361434-60361453 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8.3:60360590-60360609 | MS.gene37515:intron | 20.0% |
| !!! | GTAGGAATAGTTTTTATTTA+AGG | + | chr8.3:60360839-60360858 | MS.gene37515:intron | 20.0% |
| !!! | TGTAGATTTTTATTTTTCGT+AGG | + | chr8.3:60361327-60361346 | MS.gene37515:intron | 20.0% |
| !!! | TTTTAACTGTTTTAGTTATC+AGG | + | chr8.3:60361733-60361752 | MS.gene37515:intron | 20.0% |
| ! | AAATCACATTGAAAATGCAT+AGG | + | chr8.3:60361657-60361676 | MS.gene37515:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8.3:60360718-60360737 | MS.gene37515:intron | 25.0% |
| ! | CAATAACATTGGAATAGAAA+GGG | - | chr8.3:60361876-60361895 | None:intergenic | 25.0% |
| ! | CACTTTGATGTTAATTTAGA+TGG | - | chr8.3:60361097-60361116 | None:intergenic | 25.0% |
| ! | CATTTCTAAGTAGAAATTCA+TGG | + | chr8.3:60361046-60361065 | MS.gene37515:intron | 25.0% |
| ! | TCAATAACATTGGAATAGAA+AGG | - | chr8.3:60361877-60361896 | None:intergenic | 25.0% |
| ! | TCTTCTTCATATAAACACAT+AGG | + | chr8.3:60361437-60361456 | MS.gene37515:intron | 25.0% |
| ! | TTTATTGTAAATGTTGGAAG+AGG | + | chr8.3:60362000-60362019 | MS.gene37515:CDS | 25.0% |
| !! | ATTGTTGGATTAGGAAATAT+TGG | + | chr8.3:60361769-60361788 | MS.gene37515:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr8.3:60360395-60360414 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr8.3:60360396-60360415 | None:intergenic | 25.0% |
| AATTGTGAGTTCATCATACT+GGG | - | chr8.3:60361474-60361493 | None:intergenic | 30.0% | |
| ACAAAATCAAGAGTCTTACA+AGG | - | chr8.3:60360957-60360976 | None:intergenic | 30.0% | |
| ACAATTGATCAAGTGTTTGA+TGG | + | chr8.3:60362041-60362060 | MS.gene37515:CDS | 30.0% | |
| AGTTGCAAGATCAATAACAT+TGG | - | chr8.3:60361887-60361906 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8.3:60360458-60360477 | MS.gene37515:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8.3:60360717-60360736 | MS.gene37515:intron | 30.0% | |
| GAAGGGTTTATTGTAAATGT+TGG | + | chr8.3:60361994-60362013 | MS.gene37515:CDS | 30.0% | |
| TAATTGTGAGTTCATCATAC+TGG | - | chr8.3:60361475-60361494 | None:intergenic | 30.0% | |
| TGATGAAAAGCTATTTGCAA+TGG | + | chr8.3:60362116-60362135 | MS.gene37515:CDS | 30.0% | |
| TGTTTATAATGTGTCGTGTT+TGG | - | chr8.3:60361948-60361967 | None:intergenic | 30.0% | |
| ! | AATAGCTTTTCATCAACAAG+AGG | - | chr8.3:60362111-60362130 | None:intergenic | 30.0% |
| ! | ACATGAAGTATAAGTTGAAG+TGG | - | chr8.3:60361578-60361597 | None:intergenic | 30.0% |
| ! | ATTAGAGGTAGTTCTATTTG+AGG | + | chr8.3:60361358-60361377 | MS.gene37515:intron | 30.0% |
| ! | GAAGCTACAATTCTATGTTT+TGG | - | chr8.3:60361633-60361652 | None:intergenic | 30.0% |
| ! | GAATCAAATCTGAAACATTG+AGG | + | chr8.3:60361116-60361135 | MS.gene37515:intron | 30.0% |
| ! | GTAAGACTCTTGATTTTGTA+AGG | + | chr8.3:60360958-60360977 | MS.gene37515:intron | 30.0% |
| ! | TATAAACAACGATGTCCTTT+TGG | + | chr8.3:60361960-60361979 | MS.gene37515:CDS | 30.0% |
| ! | TTTTGGCATTAGGAAAAGAA+GGG | + | chr8.3:60361977-60361996 | MS.gene37515:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8.3:60360778-60360797 | MS.gene37515:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8.3:60360797-60360778 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8.3:60360777-60360796 | MS.gene37515:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8.3:60360796-60360777 | None:intergenic | 30.0% |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8.3:60360762-60360781 | MS.gene37515:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8.3:60360781-60360762 | None:intergenic | 35.0% | |
| AATGAGTTTGTGTGAACTTG+TGG | + | chr8.3:60362188-60362207 | MS.gene37515:CDS | 35.0% | |
| ATTGTAAATGTTGGAAGAGG+TGG | + | chr8.3:60362003-60362022 | MS.gene37515:CDS | 35.0% | |
| ATTGTGAGTTCATCATACTG+GGG | - | chr8.3:60361473-60361492 | None:intergenic | 35.0% | |
| CAAAACCTTTAGTGCATGTT+TGG | - | chr8.3:60361712-60361731 | None:intergenic | 35.0% | |
| CAAAGTTATCCCATTCTTAC+CGG | + | chr8.3:60361156-60361175 | MS.gene37515:intron | 35.0% | |
| CTGAAACATTGAGGAAGAAA+AGG | + | chr8.3:60361125-60361144 | MS.gene37515:intron | 35.0% | |
| CTTCCAAAAATCCTTGTTCT+TGG | + | chr8.3:60359709-60359728 | MS.gene37515:CDS | 35.0% | |
| GCTATTTGCAATGGATAATG+TGG | + | chr8.3:60362125-60362144 | MS.gene37515:CDS | 35.0% | |
| TTGATCAAGTGTTTGATGGA+AGG | + | chr8.3:60362045-60362064 | MS.gene37515:CDS | 35.0% | |
| TTGATGGAAGGAGAAATTAC+TGG | + | chr8.3:60362057-60362076 | MS.gene37515:CDS | 35.0% | |
| ! | ATGTCTTTTGATGCTTAGAG+TGG | - | chr8.3:60361843-60361862 | None:intergenic | 35.0% |
| ! | CTTCTTTTCCTAATGCCAAA+AGG | - | chr8.3:60361978-60361997 | None:intergenic | 35.0% |
| ! | CTTTTGGCATTAGGAAAAGA+AGG | + | chr8.3:60361976-60361995 | MS.gene37515:CDS | 35.0% |
| ! | TCGTAGGTTTTCTCTATTAG+AGG | + | chr8.3:60361343-60361362 | MS.gene37515:intron | 35.0% |
| ! | TGGATTAGGAAATATTGGCA+TGG | + | chr8.3:60361774-60361793 | MS.gene37515:CDS | 35.0% |
| !! | AAGGATTTTTGGAAGGTCTT+TGG | - | chr8.3:60359704-60359723 | None:intergenic | 35.0% |
| !! | CAAGAACAAGGATTTTTGGA+AGG | - | chr8.3:60359711-60359730 | None:intergenic | 35.0% |
| !!! | TTGAAGTGGTTTTTTTCTGC+TGG | - | chr8.3:60361564-60361583 | None:intergenic | 35.0% |
| AACCTCACTGGACTAATTAG+TGG | - | chr8.3:60362246-60362265 | None:intergenic | 40.0% | |
| AATGTGATCAGTTCCAACAC+TGG | - | chr8.3:60359944-60359963 | None:intergenic | 40.0% | |
| ACAGTAAAAGCAGCTGAATG+TGG | - | chr8.3:60362159-60362178 | None:intergenic | 40.0% | |
| ACTAATTAGTCCAGTGAGGT+TGG | + | chr8.3:60362245-60362264 | MS.gene37515:CDS | 40.0% | |
| CACAACCAAACATGCACTAA+AGG | + | chr8.3:60361704-60361723 | MS.gene37515:intron | 40.0% | |
| CGTGTTGGAATTGTTGGATT+AGG | + | chr8.3:60361760-60361779 | MS.gene37515:CDS | 40.0% | |
| GCATGAATTGTTGCAGTGAT+AGG | - | chr8.3:60359810-60359829 | None:intergenic | 40.0% | |
| GGATTTCTCTCTTGGATACA+AGG | + | chr8.3:60360128-60360147 | MS.gene37515:CDS | 40.0% | |
| TATCCAAGAGAGAAATCCCA+AGG | - | chr8.3:60360126-60360145 | None:intergenic | 40.0% | |
| ! | AACGATGTCCTTTTGGCATT+AGG | + | chr8.3:60361967-60361986 | MS.gene37515:CDS | 40.0% |
| ! | AATATGGCGGGAATTGTTGA+TGG | - | chr8.3:60359850-60359869 | None:intergenic | 40.0% |
| ! | GGACCAAGAACAAGGATTTT+TGG | - | chr8.3:60359715-60359734 | None:intergenic | 40.0% |
| !! | AGAAATTACTGGTGCTGGTT+TGG | + | chr8.3:60362068-60362087 | MS.gene37515:CDS | 40.0% |
| !! | TGTTGATGGATTGTGGTTGT+CGG | - | chr8.3:60359836-60359855 | None:intergenic | 40.0% |
| AGCCACTAATTAGTCCAGTG+AGG | + | chr8.3:60362241-60362260 | MS.gene37515:CDS | 45.0% | |
| AGTTATCCCATTCTTACCGG+AGG | + | chr8.3:60361159-60361178 | MS.gene37515:intron | 45.0% | |
| AGTTTCAATTCCGACGAGAG+AGG | - | chr8.3:60361409-60361428 | None:intergenic | 45.0% | |
| AGTTTGTGTGAACTTGTGGC+AGG | + | chr8.3:60362192-60362211 | MS.gene37515:CDS | 45.0% | |
| ATATGCGGCGCTACAGAATA+TGG | - | chr8.3:60359866-60359885 | None:intergenic | 45.0% | |
| ATCAAATGACTCGAGTCGCT+TGG | - | chr8.3:60361806-60361825 | None:intergenic | 45.0% | |
| GAAGGAGAAATTACTGGTGC+TGG | + | chr8.3:60362063-60362082 | MS.gene37515:CDS | 45.0% | |
| GAATATTAGTGTCTCGCCTC+CGG | - | chr8.3:60361178-60361197 | None:intergenic | 45.0% | |
| GATCCTTGGGATTTCTCTCT+TGG | + | chr8.3:60360120-60360139 | MS.gene37515:CDS | 45.0% | |
| GTGAGAGTAGAGTTGTTCGA+AGG | - | chr8.3:60359755-60359774 | None:intergenic | 45.0% | |
| GTTTGTGTGAACTTGTGGCA+GGG | + | chr8.3:60362193-60362212 | MS.gene37515:CDS | 45.0% | |
| TAGTTATCAGGCAAGCGTGT+TGG | + | chr8.3:60361745-60361764 | MS.gene37515:intron | 45.0% | |
| TGCTGTCATGAGGAAAGTGA+CGG | + | chr8.3:60360059-60360078 | MS.gene37515:CDS | 45.0% | |
| ! | AAGGTTGAGAAGCATGTTGG+TGG | - | chr8.3:60359736-60359755 | None:intergenic | 45.0% |
| ! | AGGGTTTGGGGTTTAGGAAA+TGG | - | chr8.3:60359783-60359802 | None:intergenic | 45.0% |
| ! | ATGTTGGTGGACCAAGAACA+AGG | - | chr8.3:60359723-60359742 | None:intergenic | 45.0% |
| ! | GTCGGTAGTGATGGAATATG+CGG | - | chr8.3:60359881-60359900 | None:intergenic | 45.0% |
| ! | GTTCTATTTGAGGCGATGTC+AGG | + | chr8.3:60361368-60361387 | MS.gene37515:intron | 45.0% |
| ! | TCGAAGGTTGAGAAGCATGT+TGG | - | chr8.3:60359739-60359758 | None:intergenic | 45.0% |
| !! | CGGGAATTGTTGATGGATTG+TGG | - | chr8.3:60359843-60359862 | None:intergenic | 45.0% |
| !! | AAATTACATTAAAATATATT+AGG | - | chr8.3:60360242-60360261 | None:intergenic | 5.0% |
| !!! | TATAAGTAATTTTTTTTTAT+AGG | - | chr8.3:60360364-60360383 | None:intergenic | 5.0% |
| AACTTCTAGCGACGCACTTG+TGG | + | chr8.3:60361903-60361922 | MS.gene37515:CDS | 50.0% | |
| AATGTGCACACCTCTCTCGT+CGG | + | chr8.3:60361396-60361415 | MS.gene37515:intron | 50.0% | |
| AGTGATAGGCCTGAGGGTTT+GGG | - | chr8.3:60359796-60359815 | None:intergenic | 50.0% | |
| CAACACTGGAGGTGACAACA+AGG | - | chr8.3:60359930-60359949 | None:intergenic | 50.0% | |
| GGCAAGCGTGTTGGAATTGT+TGG | + | chr8.3:60361754-60361773 | MS.gene37515:CDS | 50.0% | |
| GGGAAGAAGGTTGAGAACGT+CGG | - | chr8.3:60359899-60359918 | None:intergenic | 50.0% | |
| GTGATCAGTTCCAACACTGG+AGG | - | chr8.3:60359941-60359960 | None:intergenic | 50.0% | |
| GTTGAGAACGTCGGTAGTGA+TGG | - | chr8.3:60359890-60359909 | None:intergenic | 50.0% | |
| TGTCATGAGGAAAGTGACGG+TGG | + | chr8.3:60360062-60360081 | MS.gene37515:CDS | 50.0% | |
| TGTTGCAGTGATAGGCCTGA+GGG | - | chr8.3:60359802-60359821 | None:intergenic | 50.0% | |
| TTCCTAAACCCCAAACCCTC+AGG | + | chr8.3:60359784-60359803 | MS.gene37515:CDS | 50.0% | |
| TTGTTGCAGTGATAGGCCTG+AGG | - | chr8.3:60359803-60359822 | None:intergenic | 50.0% | |
| ! | AGGAGTTTTCTCGGAGGATG+TGG | + | chr8.3:60360011-60360030 | MS.gene37515:CDS | 50.0% |
| ! | CTTGTTGTCACCTCCAGTGT+TGG | + | chr8.3:60359928-60359947 | MS.gene37515:CDS | 50.0% |
| CAACCTGAATTCCGCGACGA+CGG | - | chr8.3:60359981-60360000 | None:intergenic | 55.0% | |
| CAGTGATAGGCCTGAGGGTT+TGG | - | chr8.3:60359797-60359816 | None:intergenic | 55.0% | |
| CATGAGGAAAGTGACGGTGG+CGG | + | chr8.3:60360065-60360084 | MS.gene37515:CDS | 55.0% | |
| CGAGAAAACTCCTCCAGCAC+CGG | - | chr8.3:60360004-60360023 | None:intergenic | 55.0% | |
| CTCGGAGGATGTGGCTGATA+TGG | + | chr8.3:60360020-60360039 | MS.gene37515:CDS | 55.0% | |
| CTGAATGAATGCCGTCGTCG+CGG | + | chr8.3:60359967-60359986 | MS.gene37515:CDS | 55.0% | |
| GCGGGAACGTTCTGATCCTT+GGG | + | chr8.3:60360107-60360126 | MS.gene37515:CDS | 55.0% | |
| GGATGTGGCTGATATGGCAG+TGG | + | chr8.3:60360026-60360045 | MS.gene37515:CDS | 55.0% | |
| GTCTCGCCTCCGGTAAGAAT+GGG | - | chr8.3:60361168-60361187 | None:intergenic | 55.0% | |
| GTGACAACAAGGCTGAGCGA+GGG | - | chr8.3:60359919-60359938 | None:intergenic | 55.0% | |
| GTGATAGGCCTGAGGGTTTG+GGG | - | chr8.3:60359795-60359814 | None:intergenic | 55.0% | |
| TGATATGGCAGTGGCGTTGC+TGG | + | chr8.3:60360035-60360054 | MS.gene37515:CDS | 55.0% | |
| TGCGGCGCTACAGAATATGG+CGG | - | chr8.3:60359863-60359882 | None:intergenic | 55.0% | |
| TGTCTCGCCTCCGGTAAGAA+TGG | - | chr8.3:60361169-60361188 | None:intergenic | 55.0% | |
| ! | CGTTGCTGGTTGCTGTCATG+AGG | + | chr8.3:60360049-60360068 | MS.gene37515:CDS | 55.0% |
| ! | TGCTGGAGGAGTTTTCTCGG+AGG | + | chr8.3:60360005-60360024 | MS.gene37515:CDS | 55.0% |
| !! | CGGTGCTGGAGGAGTTTTCT+CGG | + | chr8.3:60360002-60360021 | MS.gene37515:CDS | 55.0% |
| ATCGGTATGTGAGGACGCGG+CGG | + | chr8.3:60360088-60360107 | MS.gene37515:CDS | 60.0% | |
| ATGCCGTCGTCGCGGAATTC+AGG | + | chr8.3:60359975-60359994 | MS.gene37515:CDS | 60.0% | |
| CAAGGCTGAGCGAGGGAAGA+AGG | - | chr8.3:60359912-60359931 | None:intergenic | 60.0% | |
| CGCGACGACGGCATTCATTC+AGG | - | chr8.3:60359969-60359988 | None:intergenic | 60.0% | |
| CGGATCGGTATGTGAGGACG+CGG | + | chr8.3:60360085-60360104 | MS.gene37515:CDS | 60.0% | |
| GCGGCGCTACAGAATATGGC+GGG | - | chr8.3:60359862-60359881 | None:intergenic | 60.0% | |
| GGCGGGAACGTTCTGATCCT+TGG | + | chr8.3:60360106-60360125 | MS.gene37515:CDS | 60.0% | |
| GGTGACAACAAGGCTGAGCG+AGG | - | chr8.3:60359920-60359939 | None:intergenic | 60.0% | |
| ! | GGCCTGAGGGTTTGGGGTTT+AGG | - | chr8.3:60359789-60359808 | None:intergenic | 60.0% |
| !! | ATTCAGGTTGCCGGTGCTGG+AGG | + | chr8.3:60359991-60360010 | MS.gene37515:CDS | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.3:60359982-60360001 | MS.gene37515:CDS | 60.0% |
| !! | GGAAAGTGACGGTGGCGGAT+CGG | + | chr8.3:60360070-60360089 | MS.gene37515:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGTGC+TGG | + | chr8.3:60359988-60360007 | MS.gene37515:CDS | 60.0% |
| TCGGTATGTGAGGACGCGGC+GGG | + | chr8.3:60360089-60360108 | MS.gene37515:CDS | 65.0% | |
| !! | CGGTGGCGGATCGGTATGTG+AGG | + | chr8.3:60360079-60360098 | MS.gene37515:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 60359697 | 60362275 | 60359697 | ID=MS.gene37515 |
| chr8.3 | mRNA | 60359697 | 60362275 | 60359697 | ID=MS.gene37515.t1;Parent=MS.gene37515 |
| chr8.3 | exon | 60359697 | 60360149 | 60359697 | ID=MS.gene37515.t1.exon1;Parent=MS.gene37515.t1 |
| chr8.3 | CDS | 60359697 | 60360149 | 60359697 | ID=cds.MS.gene37515.t1;Parent=MS.gene37515.t1 |
| chr8.3 | exon | 60361748 | 60362275 | 60361748 | ID=MS.gene37515.t1.exon2;Parent=MS.gene37515.t1 |
| chr8.3 | CDS | 60361748 | 60362275 | 60361748 | ID=cds.MS.gene37515.t1;Parent=MS.gene37515.t1 |
| Gene Sequence |
| Protein sequence |
