AlfalfaGEDB | MS.gene37515

M. sativa cultivar XinJiangDaYe / MS.gene37515

KEGG: K15919
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0048037 GO:0050662 GO:0051287 GO:0055114 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00389.33 PF02826.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37515.t1	XP_013444993.1	93.9	326	20	0	1	326	1	326	5.80E-171	610.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37515.t1	Q9LE33	48.5	324	154	4	6	324	7	322	2.8e-81	303.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37515.t1	A0A072TQA0	93.9	326	20	0	1	326	1	326	4.2e-171	610.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene017129	MS.gene37515	PPI
MS.gene029300	MS.gene37515	PPI
MS.gene030057	MS.gene37515	PPI
MS.gene038363	MS.gene37515	PPI
MS.gene062351	MS.gene37515	PPI
MS.gene065032	MS.gene37515	PPI
MS.gene068259	MS.gene37515	PPI
MS.gene068262	MS.gene37515	PPI
MS.gene068263	MS.gene37515	PPI
MS.gene07262	MS.gene37515	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37515.t1	MTR_8g033390	93.865	326	20	0	1	326	1	326	0.0	632
MS.gene37515.t1	MTR_8g033400	58.125	320	132	2	3	322	15	332	4.21e-134	384
MS.gene37515.t1	MTR_8g033410	57.233	318	135	1	5	322	9	325	1.31e-132	380
MS.gene37515.t1	MTR_7g075830	49.671	304	136	6	36	324	15	316	1.08e-95	286
MS.gene37515.t1	MTR_4g013100	45.745	282	150	2	41	322	35	313	4.87e-86	261
MS.gene37515.t1	MTR_4g013090	42.903	310	157	5	20	322	16	312	6.98e-86	261
MS.gene37515.t1	MTR_4g012960	43.772	281	150	2	42	322	37	309	1.03e-85	260
MS.gene37515.t1	MTR_2g101840	45.614	285	149	4	39	322	34	313	1.14e-75	235
MS.gene37515.t1	MTR_4g013135	43.972	282	155	2	41	322	34	312	4.61e-71	223
MS.gene37515.t1	MTR_3g005970	27.007	274	175	6	65	318	107	375	3.28e-27	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37515.t1	AT2G45630	48.930	327	152	5	3	322	19	337	5.08e-106	313
MS.gene37515.t1	AT1G12550	48.457	324	154	4	6	324	7	322	5.43e-104	308
MS.gene37515.t1	AT1G79870	45.070	284	153	2	39	322	32	312	1.20e-79	245
MS.gene37515.t1	AT1G79870	41.197	284	145	2	39	322	32	293	8.67e-69	217
MS.gene37515.t1	AT2G45630	40.645	155	82	3	3	155	19	165	4.64e-30	113
MS.gene37515.t1	AT1G72190	26.603	312	194	9	16	306	57	354	2.95e-27	110
MS.gene37515.t1	AT1G17745	28.322	286	185	8	56	326	125	405	1.52e-25	107
MS.gene37515.t1	AT4G34200	29.924	264	168	6	76	326	125	384	1.03e-24	105
MS.gene37515.t1	AT5G28310	33.679	193	76	3	131	322	91	232	7.12e-24	98.2
MS.gene37515.t1	AT3G19480	30.620	258	160	7	76	319	110	362	1.04e-22	99.0

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Find 84 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCACTGGACTAATTAG+TGG	0.487818	8.3:-60362243	None:intergenic
AACTTCTAGCGACGCACTTG+TGG	0.568567	8.3:+60361903	MS.gene37515:CDS
AAGGTTGAGAAGCATGTTGG+TGG	0.532888	8.3:-60359733	None:intergenic
AATATGGCGGGAATTGTTGA+TGG	0.425691	8.3:-60359847	None:intergenic
AATGAGTTTGTGTGAACTTG+TGG	0.617149	8.3:+60362188	MS.gene37515:CDS
AATGTGATCAGTTCCAACAC+TGG	0.588992	8.3:-60359941	None:intergenic
ACAATTGATCAAGTGTTTGA+TGG	0.359013	8.3:+60362041	MS.gene37515:CDS
ACAGTAAAAGCAGCTGAATG+TGG	0.579189	8.3:-60362156	None:intergenic
ACTAATTAGTCCAGTGAGGT+TGG	0.495572	8.3:+60362245	MS.gene37515:CDS
AGAAATTACTGGTGCTGGTT+TGG	0.306096	8.3:+60362068	MS.gene37515:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTGAGTTCATCATACT+GGG	-	chr8.3:60361474-60361493	None:intergenic	30.0%
ACAAAATCAAGAGTCTTACA+AGG	-	chr8.3:60360957-60360976	None:intergenic	30.0%
ACAATTGATCAAGTGTTTGA+TGG	+	chr8.3:60362041-60362060	MS.gene37515:CDS	30.0%
AGTTGCAAGATCAATAACAT+TGG	-	chr8.3:60361887-60361906	None:intergenic	30.0%
CAAGATTAGAACACTATGAA+AGG	+	chr8.3:60360458-60360477	MS.gene37515:intron	30.0%
CAGTGCAGAAAAACAAAATT+AGG	+	chr8.3:60360717-60360736	MS.gene37515:intron	30.0%
GAAGGGTTTATTGTAAATGT+TGG	+	chr8.3:60361994-60362013	MS.gene37515:CDS	30.0%
TAATTGTGAGTTCATCATAC+TGG	-	chr8.3:60361475-60361494	None:intergenic	30.0%
TGATGAAAAGCTATTTGCAA+TGG	+	chr8.3:60362116-60362135	MS.gene37515:CDS	30.0%
TGTTTATAATGTGTCGTGTT+TGG	-	chr8.3:60361948-60361967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	60359697	60362275	60359697	ID=MS.gene37515
chr8.3	mRNA	60359697	60362275	60359697	ID=MS.gene37515.t1;Parent=MS.gene37515
chr8.3	exon	60359697	60360149	60359697	ID=MS.gene37515.t1.exon1;Parent=MS.gene37515.t1
chr8.3	CDS	60359697	60360149	60359697	ID=cds.MS.gene37515.t1;Parent=MS.gene37515.t1
chr8.3	exon	60361748	60362275	60361748	ID=MS.gene37515.t1.exon2;Parent=MS.gene37515.t1
chr8.3	CDS	60361748	60362275	60361748	ID=cds.MS.gene37515.t1;Parent=MS.gene37515.t1

Gene Sequence

>MS.gene37515

ATGGCCAAAGACCTTCCAAAAATCCTTGTTCTTGGTCCACCAACATGCTTCTCAACCTTCGAACAACTCTACTCTCACAAATTCCATTTCCTAAACCCCAAACCCTCAGGCCTATCACTGCAACAATTCATGCTTGCCGACAACCACAATCCATCAACAATTCCCGCCATATTCTGTAGCGCCGCATATTCCATCACTACCGACGTTCTCAACCTTCTTCCCTCGCTCAGCCTTGTTGTCACCTCCAGTGTTGGAACTGATCACATTGACCTGAATGAATGCCGTCGTCGCGGAATTCAGGTTGCCGGTGCTGGAGGAGTTTTCTCGGAGGATGTGGCTGATATGGCAGTGGCGTTGCTGGTTGCTGTCATGAGGAAAGTGACGGTGGCGGATCGGTATGTGAGGACGCGGCGGGAACGTTCTGATCCTTGGGATTTCTCTCTTGGATACAAGGTTTCCATTTTGACTACTTTATTTTTTGTATTTAATATTTGATTAAGGTTAAATATGTTATAGGAACTCACAAGCTTTTAAGTTTAATTCCTAATATATTTTAATGTAATTTTTTTAGTCATAAAAACTAGGGTTAATTATGTTTCTAGTCCCTATAAAATAGCGACCTTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTTCCTATAAAAAAAAATTACTTATAATTTTAGTCCCTGCTAAAACAAAGTTTGATTAATTATCCTTAAACTCTTAAATTTTTGAACGATTTTTTTGAGACAAGATTAGAACACTATGAAAGGTTCGTTTACTAAAATTTAGAATTTTCTGACATGAAATGAATTAAATATGAATTTTTTAAAACGACAAAAGTTAAAGATAAAAAATAATAAAATCTGGATGTAGAAATCAAATTTTGCGATAATTTTTTGCGGACGAACTTTTAGTAATGTTCTAAACATGTCTGCAAAAAATTGTTCAAAAATTTAAGAGTTTAAGCATAAATTAAACAAATTTGAATTGAGTAGGGACTAATACTCAGTGCAGAAAAACAAAATTAGGGACTAAAAATGCTATTAAAATTAAGTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGACTAGAAACATAATTAACCCTAAAAACTATTATAGTTTGTAGGAATAGTTTTTATTTAAGGTTTTTTATTTTACGGAAAAATTGATAATTAGTCCTAAAACTAGTCTTTATAAAATGCAAATAAAACAAAAAATGATTTTTTTTAGGGACTAACCTTGTAAGACTCTTGATTTTGTAAGGATTAAAAAACTATTTAACATTTTTTATAAACATTTTATTTAGATTATCAACTGTGATGATGTTGTCATTTCTAAGTAGAAATTCATGGCATTGTTTCTAGAAGTTAAATTAGTCCATCTAAATTAACATCAAAGTGAATCAAATCTGAAACATTGAGGAAGAAAAGGTAGAAGTTCAAAGTTATCCCATTCTTACCGGAGGCGAGACACTAATATTCGTTTTTATTGTTTTTCTCAATAAATTATTAACATAGACAATAAAAAACATGGCTTTCATGTCAAAATAACATTTATTTTTCTTTCTTTTCTAAATAAATAAATTTGTATTCAATTATAACAGTTGTTTTTGTAGATTTTTATTTTTCGTAGGTTTTCTCTATTAGAGGTAGTTCTATTTGAGGCGATGTCAGGTGTTAAATGTGCACACCTCTCTCGTCGGAATTGAAACTTTCCTTTTTCTTCTTCATATAAACACATAGGTATGTTTATACCCCAGTATGATGAACTCACAATTACAAATCAATTTTATAGTAGATCCATTCATGAGATATTGAAATTTCATTGGCATTGTAGCTAATTTACCAGCAGAAAAAAACCACTTCAACTTATACTTCATGTTTCTGTGAAAACTCATATAGAACGCGACAGAACCAAAACATAGAATTGTAGCTTCTGTAAAATCACATTGAAAATGCATAGGAACGTGACAAATACTGAATCGACGCACAACCAAACATGCACTAAAGGTTTTGTTTTTAACTGTTTTAGTTATCAGGCAAGCGTGTTGGAATTGTTGGATTAGGAAATATTGGCATGGAAGTAGCCAAGCGACTCGAGTCATTTGATTGCATTATCTCGTACCACTCTAAGCATCAAAAGACATCAATTTCGTACCCTTTCTATTCCAATGTTATTGATCTTGCAACTTCTAGCGACGCACTTGTGGTATGTTGTGCACTAAACAACCAAACACGACACATTATAAACAACGATGTCCTTTTGGCATTAGGAAAAGAAGGGTTTATTGTAAATGTTGGAAGAGGTGGTCTTATTGATGAGAAACAATTGATCAAGTGTTTGATGGAAGGAGAAATTACTGGTGCTGGTTTGGATCTGTTTGAGAATGAGCCTCTTGTTGATGAAAAGCTATTTGCAATGGATAATGTGGTTTTATCTCCACATTCAGCTGCTTTTACTGTTGAAGCTACAATGAGTTTGTGTGAACTTGTGGCAGGGAATTTAGAAGCTTTCTTCTTAAACAAGCCACTAATTAGTCCAGTGAGGTTGGTTGAGTAA

Protein sequence

>MS.gene37515.t1

MAKDLPKILVLGPPTCFSTFEQLYSHKFHFLNPKPSGLSLQQFMLADNHNPSTIPAIFCSAAYSITTDVLNLLPSLSLVVTSSVGTDHIDLNECRRRGIQVAGAGGVFSEDVADMAVALLVAVMRKVTVADRYVRTRRERSDPWDFSLGYKLSGKRVGIVGLGNIGMEVAKRLESFDCIISYHSKHQKTSISYPFYSNVIDLATSSDALVVCCALNNQTRHIINNDVLLALGKEGFIVNVGRGGLIDEKQLIKCLMEGEITGAGLDLFENEPLVDEKLFAMDNVVLSPHSAAFTVEATMSLCELVAGNLEAFFLNKPLISPVRLVE