AlfalfaGEDB | MS.gene39443

M. sativa cultivar XinJiangDaYe / MS.gene39443

KEGG: K03144
GO: GO:0000439 GO:0001671 GO:0003674 GO:0005575 GO:0005667 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008047 GO:0008150 GO:0008152 GO:0009987 GO:0030234 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044798 GO:0046483 GO:0050896 GO:0051716 GO:0060589 GO:0060590 GO:0071704 GO:0090304 GO:0090575 GO:0098772 GO:1901360
PFAM: PF03849.17 PF13625.9 PF18307.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39443.t1	XP_013457056.1	97.4	453	10	1	1	453	1	451	4.60E-251	876.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39443.t1	Q680U9	74.1	452	115	1	1	452	1	450	3.5e-199	695.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39443.t1	G7ZZ96	97.4	453	10	1	1	453	1	451	3.3e-251	876.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050355	MS.gene39443	0.814673	1.37E-51	-1.69E-46
MS.gene053166	MS.gene39443	0.809387	1.94E-50	-1.69E-46
MS.gene054559	MS.gene39443	0.803704	3.07E-49	-1.69E-46
MS.gene05604	MS.gene39443	0.807847	4.14E-50	-1.69E-46
MS.gene057026	MS.gene39443	0.809753	1.62E-50	-1.69E-46
MS.gene057027	MS.gene39443	0.803077	4.14E-49	-1.69E-46
MS.gene058625	MS.gene39443	0.809451	1.88E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene032967	MS.gene39443	PPI
MS.gene038754	MS.gene39443	PPI
MS.gene044565	MS.gene39443	PPI
MS.gene39443	MS.gene012032	PPI
MS.gene39443	MS.gene80729	PPI
MS.gene76435	MS.gene39443	PPI
MS.gene89597	MS.gene39443	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene39443.t1	MTR_4g088935	97.351	453	10	1	1	453	1	451	910
MS.gene39443.t1	MTR_3g072660	96.909	453	13	1	1	453	1	452	907
MS.gene39443.t1	MTR_3g072660	95.364	453	13	2	1	453	1	445	885
MS.gene39443.t1	MTR_3g072660	96.364	385	13	1	1	385	1	384	761
MS.gene39443.t1	MTR_3g072660	94.545	385	13	2	1	385	1	377	739
MS.gene39443.t1	MTR_3g072660	96.369	358	12	1	1	358	1	357	705
MS.gene39443.t1	MTR_3g072660	99.083	327	3	0	127	453	1	327	675
MS.gene39443.t1	MTR_3g072660	96.942	327	3	1	127	453	1	320	654
MS.gene39443.t1	MTR_3g072660	95.973	298	11	1	1	298	1	297	582

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene39443.t1	AT4G17020	74.115	452	115	1	1	452	1	450	720
MS.gene39443.t1	AT4G17020	74.115	452	115	1	1	452	1	450	720
MS.gene39443.t1	AT4G17020	74.115	452	115	1	1	452	1	450	717

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Find 88 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTTTCAGTTAATTT+TGG	0.182729	4.2:-22106549	None:intergenic
AAATCAAAATGCCTGAGGTT+AGG	0.443637	4.2:+22104456	None:intergenic
AACACATATTTCTTTGCAAG+AGG	0.556398	4.2:-22104920	None:intergenic
AAGGTCTTGTCAACATGACT+TGG	0.470934	4.2:-22106340	None:intergenic
AATTACACTGTGAGATATTG+CGG	0.567848	4.2:+22108701	MS.gene39443:CDS
AATTATGTTCCTCTGAAATT+CGG	0.351671	4.2:-22107048	None:intergenic
ACACATTGACCGAATTTCAG+AGG	0.620159	4.2:+22107039	MS.gene39443:CDS
ACAGCTTTGGTACATCATCA+GGG	0.675051	4.2:+22106682	MS.gene39443:CDS
ACATATTTCTTTGCAAGAGG+CGG	0.617514	4.2:-22104917	None:intergenic
ACCTGTGCCGGCTAAATTAT+TGG	0.265931	4.2:+22104964	MS.gene39443:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACATATTTCTTTGCAAG+AGG	-	chr4.2:22104923-22104942	None:intergenic	30.0%
AATCAAAAAAGCCATAACAG+GGG	-	chr4.2:22109933-22109952	None:intergenic	30.0%
AATTACACTGTGAGATATTG+CGG	+	chr4.2:22108701-22108720	MS.gene39443:CDS	30.0%
AGATTCAAAGAAGATGCATT+TGG	+	chr4.2:22110031-22110050	MS.gene39443:CDS	30.0%
ATAACATGTCAATCGTTCAT+TGG	+	chr4.2:22108500-22108519	MS.gene39443:intron	30.0%
ATAGCTCCAACAATAAGATT+TGG	-	chr4.2:22109065-22109084	None:intergenic	30.0%
ATATGTATGGAAGTTTCTGT+TGG	+	chr4.2:22108338-22108357	MS.gene39443:intron	30.0%
ATTTATTACATTAGCGGTGT+TGG	+	chr4.2:22107924-22107943	MS.gene39443:intron	30.0%
ATTTGATGCATACCAAAAAC+TGG	-	chr4.2:22106575-22106594	None:intergenic	30.0%
CAACTTCCAAATCTTATTGT+TGG	+	chr4.2:22109056-22109075	MS.gene39443:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	22104464	22110109	22104464	ID=MS.gene39443
chr4.2	mRNA	22104464	22110109	22104464	ID=MS.gene39443.t1;Parent=MS.gene39443
chr4.2	exon	22104464	22104576	22104464	ID=MS.gene39443.t1.exon1;Parent=MS.gene39443.t1
chr4.2	CDS	22104464	22104576	22104464	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22104910	22105083	22104910	ID=MS.gene39443.t1.exon2;Parent=MS.gene39443.t1
chr4.2	CDS	22104910	22105083	22104910	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22105636	22105704	22105636	ID=MS.gene39443.t1.exon3;Parent=MS.gene39443.t1
chr4.2	CDS	22105636	22105704	22105636	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22106036	22106129	22106036	ID=MS.gene39443.t1.exon4;Parent=MS.gene39443.t1
chr4.2	CDS	22106036	22106129	22106036	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22106316	22106416	22106316	ID=MS.gene39443.t1.exon5;Parent=MS.gene39443.t1
chr4.2	CDS	22106316	22106416	22106316	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22106536	22106581	22106536	ID=MS.gene39443.t1.exon6;Parent=MS.gene39443.t1
chr4.2	CDS	22106536	22106581	22106536	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22106665	22106724	22106665	ID=MS.gene39443.t1.exon7;Parent=MS.gene39443.t1
chr4.2	CDS	22106665	22106724	22106665	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22106805	22106873	22106805	ID=MS.gene39443.t1.exon8;Parent=MS.gene39443.t1
chr4.2	CDS	22106805	22106873	22106805	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22107026	22107109	22107026	ID=MS.gene39443.t1.exon9;Parent=MS.gene39443.t1
chr4.2	CDS	22107026	22107109	22107026	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22107241	22107324	22107241	ID=MS.gene39443.t1.exon10;Parent=MS.gene39443.t1
chr4.2	CDS	22107241	22107324	22107241	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22108649	22108734	22108649	ID=MS.gene39443.t1.exon11;Parent=MS.gene39443.t1
chr4.2	CDS	22108649	22108734	22108649	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22109046	22109136	22109046	ID=MS.gene39443.t1.exon12;Parent=MS.gene39443.t1
chr4.2	CDS	22109046	22109136	22109046	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22109659	22109739	22109659	ID=MS.gene39443.t1.exon13;Parent=MS.gene39443.t1
chr4.2	CDS	22109659	22109739	22109659	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22109816	22109890	22109816	ID=MS.gene39443.t1.exon14;Parent=MS.gene39443.t1
chr4.2	CDS	22109816	22109890	22109816	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1
chr4.2	exon	22109975	22110109	22109975	ID=MS.gene39443.t1.exon15;Parent=MS.gene39443.t1
chr4.2	CDS	22109975	22110109	22109975	ID=cds.MS.gene39443.t1;Parent=MS.gene39443.t1

Gene Sequence

>MS.gene39443

ATGCCTGAGGTTAGGATCATTGCCAAGAATTTCATGGACATGGTGGCTTCAATGCCTGCCATCAAACTCGATAAACTCTACGAGAATGCATTCATCTGCGAAGCTATTCTCAGGTTATTATTATTCACTTTTCTCCTATTAAGGCCATGTTTTCATTAAACACCTTAATTAAGCTATTTCTATCATAAATCATAAAATCAAGTCAAATTGTTTTCATATAAGCTATAGATTGTTGTAGAAAACTTGTTGAAATAAGATGAAAACAACTTATGGCATATCATAACAAATAGCCCACAAGTACTTGCTTAAGTAGATAAACTCAAATAAGTACTTGTTGTGAGTTGTGAGCTTTTTGAGACAAATCATATAATGGAAGTAAATTGTATTTCTTCTTATGTTTTGAACATGCTTCGTGGTTTTAAAACTTACAAATCATAAAATGATAGGTCTCTTCCGCCTCTTGCAAAGAAATATGTGTTACAGTTATTGCATATTGATGGACCTGTGCCGGCTAAATTATTGGCGGAATGGGTGCTTCCAGATGGACTATCAAAACACAATGTTGCCATTGATAGATTGGTTCAATTGAGAGTTTTCGTTGAAGCTCTTGACAATGACAGGTGCTTGAGAGATTATTCTCTCTTCAAATTTTTCATTTTCTGTATCTCTTGTGAATATAAAAAGTAGACAATTTAGCCTCTGAAATGGTTCAAACTGGTTCATTTTGTTTCAAATGACAATTGGCCAAATGCTAGCCTATACTATGGAGTTTGGACACATATTCTGCACCTTGTAATGTGTTGAAGGACCTTTTTGTGACAAAAACTTGTTTTATTTGTTGCATGTGGTAGTTATATGAAATTATATGTATTCCTGATTTTTTGCTAAAACTCTTCACTTTCTTCTCTGTTTCTCTTAGAATACTTATCTGTGTAGATTTATCAATCACGTTATAGCATGACACGGTCCGTTCTTGAATTTTCTTAAAAGTTTATGAGGAACAGGATTTGATGTCACAATTTGGTTCATTTTTCCTTTTGATTATGTATATTATTCTCCACATCTGTGTGTCTTTGTTCAAGCTTTGAAAGATCACAGTACTGAAACATCACCATTATCACTCTCGACCCTTGTTTTACCCCAGTTTAGTATTTTTCTTCTCCTTCTTGCAGCAAGATCGGAAAAACTTACAAAGTTAATTCAACATATCAGAGAAGTCTTCAGAAACTTTTAGTACATGGGTGAGTAGTACATCACTTTGTCTTCTTTTTCTGTTCATGGTAATAGTTATCCCATCATGTTCCCTTGTTTCTATTAAGGTACATAAAATCGTTAATACGAGTGGTTCGATAAAACCCTTCCATATCACGTATTACGAGTTAACAAACCTATATAGACAATGGGTGGTTACTCCATGAAATTATCAAAATGCTGTTTAATAGTCATTCCTGAATTCAAAATTCATATGAAAAAAATCACTTTGATGTGATTATTAAAATGTTTACTACTGTCATAGTACAACTTGAATGTTTGCTTTAGCTGGTAACACGTCCTTGTGGTTAAATATGGCAGTGGAACTTTGCCGAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACATTAGAGGATCTTGAGACTTATGCTCTGGAACAATGGGAGGTGAAGTGCCTTTTCTTTTGATTCCACTTTTTGTTTACTTTGTACATCTATTTAGCAATTTATTCTTAATATTATTTATTATATTAATGCTTTAATAATTTGACTTAATTAATATGTGATGTGTTGTTTAAATTTTGACTAAAGTAAAGCCTAAACCTCCAATGACTTTGTTTTGTGGTAAACCAGTGTTTCTTGTTGCAACTTATAAGCCCAAGTCATGTTGACAAGACCTTCAACATAAGCTCTTCTTTAATGAAAGTTTTCCAGCGGCGTCTCCTGAGTCAGAGGTTCTGTTTATTTGGCAGCGATACTTCTCATTTATAACAGTTGTTTGCACTCTGTTCATATATGTAGTTGTTGTAAATTGTATCTCATATTTGATATAATATTTTATGTACCGATACAGAGACAGAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGGTATGCATCAAATGATTTATAAGCCACTTGAACTTAATGTAATGCATTTTTCTAAATTTAGAATTGTTTGTTATGAATTACAGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGGGAATATATCACTAATTCTGAGGTAGCCGTAACAGTTATCTGTCTCTGTATGTTTTTGCTATTTGTTTTCTGCATGCTCTTCATCGTCTACTTTTGGTGCAGGAGAGAGGTGTTGATGCAGGTGACTTGATATCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGTTAGACATTCTTGTACCTTGCTGAGAATCTGTTGCACATGAAACTATTATGTTCTACATTGTCGTAAATTTTACTTAGTTGTCTTATTTCCCTTTTGTAACTGCAATTTAATGCGACTTTGACACTTGATTTTTTTCCTTCCAATGATTAGGCATATAATATAAACACATTGACCGAATTTCAGAGGAACATAATTAAGGACCTTGCAGACCTTGGGCTGGTCAAACTTCAACAGGTTGGTTATATTAATTTGTGTGCTTATATTTGTAGATAATGTGATGAGATGCAGAATGATTTAACGTGGTGTATTTATTCAGCATTTTTTGTCTCACTTTTAATTTTTTTCTTTTTTTCACAACTTTATAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTAGCAACAAATCTTTCAGTGAGCATGACCGAATCATCATCAAGAAAGGAGGTTTCTTATCCGTTTCACAATTGATTTGTTTTAATTTTAATAGAAAGTTTAGACGTGGCCTTGTTTCTGCATGTGATTTCGTTTAGGGAAACTCCTTAGCTATGAAGCACGGACACCTAAAGGATTAGGCGTGTCATGGTGTCCGACACTCGTACGACAAGTGTCGGACAAACTCAGACTGGTGTCTCAAAAATTTGTTTATTTCTTCTTTGCTTCGACACTCCTTGGATCGGTGTCCGACACCTGTATGATACTCATACAACACGTGTTGGACAACTCGGACAAGTGTCCCATTCTTTTTTTTTTCTTTGCTTCGACACACCTCGGCACATATAAGACATATCTACGAGATTAAAGATGTGTGGAAGCAATGTTGATCAATGAGGGGGGTTAAAGACATTAAATTTGTTAACAATATTTTAATCTTTTTTGTTAGTAGATGGATAAAAAAGGTCAAATACTATCCAATCTTGTTTTAGAACTTTTTAAAGAAAGAAATTGCTCGATTTAGATGCACATGTATATATTTTGATTCTCGATTTAGATCTTTTACAAATAATACTAATATTTGATTTAATTATAATAAATTAATAAATATAATTTATTACATTAGCGGTGTTGGTGTCCTATATTTTTTACATTAGCAGTCTCGACGTCTTAGTGTCGTGTTAGGTGTCTGTGCTCCATAGCTCCTTAGACATGCTAAGGGTGGAGGCTCTGTAGTAATTTTTTTTTTGTTTGAGCTGAAATTTTCTCTCCGTGCCCTGTTCACTGTCTTCTACATATCCTTATATTTCTTCTTTCTTTTTAATTAAATTTATCATGTCATCAAAATGAAAAGGAAACTCTGAAATCAAATTTAAATGTTGCTTTAAATTTTGTTCATGTGTATATAGGAGTATATATTTAATTATATATGGTTTAGATGATCTTTTGGGGGGAGGGGAACTCTCTATACTGTTGGTATTAATTTAATTTGATTTCAATCAATATGTCTAAGCTGTTTTGCTTGCATATGTATGGAAGTTTCTGTTGGACATTATCAGGTTCTGGTTTCTTCACCTTCCATACTACAACTTGTAGAAAACTAATGTTTGTCGGAGTTTTCAAAATTTTCTTCGCTGTGAATCTTTTGTTGAACTTATCACCTTTTACTACTTCAAACTGATTACCTCATAACATGTCAATCGTTCATTGGCTGGCTTTAGTGGACTTGTTCTAATCTATTACACATTGCAACAATAAATATAGATTTTTCTAAAGCGAAGTGTAAAAGAGTCGTGAATATCAATGAATATAATGTCATTCTATTTAATTTTTTCAGGGATTTGTTGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCGACTTCAAAATTACACTGTGAGATATTGCGGTTATTTTCAAGGTATGCCGCGAAATATTTTCTGCAATGATGTATTCTATTTTCATAAAATAAACCCTCTAGTCTTTTCTCATGTTCCCCTTCCCTTTTGGTTTTGGAACTTCCTATGGAAATTGAAACTGGAAGTTGTTTTTTATGGAATATGTTTTTTTATTATCCTTAATTTATCTTGTACTTATATACTAAACCATTAATTCAGCTCTAAAGCTTTAAATGACCTATTTCACCAAAATATTATTGTTTGGTCTTTAGTACAACAAGCGTTTCTTTTTTCATTTATAAATATCTAATAGTGAGTAGTTGGATATATGCAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAATGCTTTTGACAATGGCATTACAGCAGACCAGGTAAGTATTAGAAATTATATTGTATTATTTTGCTTTTTAAATTGTGGTACTCGCTGTAGATGGACGTATATTTCTTGCTACACAATGTATAGTCTCAACATTGTTCTTCAAATTTGACTTCTGTAAAGGAAACCTTTATAACTTATAAGTAGCAGTAAGCTATTCAATTTGAGACTTGATATGTGGTGACCGACTTCAATCCTTCATTTGAATAAAATCTTCACTGGTGAATTGGTAGATGCATTTGAGTTATTAATGTTTTTACTATTGCATCCTTCGAGAACCACGATATACTTGTATGTCTAAATCTTTTGGCATTCTTTAATATCTTTCTACCTTAGGTTATCATTTTTCCAACAAAGAAACATAGAAATTCTACGTGAAATTGCTTCGCTTTAAGTTAAAAACATCATTAAGGAAAAGCTGTTTGTGTCAGTTGACTTTTAATTTTTATTTTTTTGAATGGGTTTAATTCAGATTCAAACAATATCTTACACAGCAACTGTGTGCATTATGTTGCAGATAGTCAGTTTCTTTCGGCAGAATGCTCATCCTCGTGTTGCACAGAGGGTACCAGCAGTGCCTGAAAATGTCACAGATCAGGTTTTGAGTCTTATTAGTGTATATGTGTGTTTTCTTTACTTCGATTTTCTGATATGTAGTATTATGGTGGTGACAGATTAGGTTGTGGGAATCAGATCTAAACAGAGTTGAGATGACAGAAGCATATTATTATGACGAGTTTCCATCCAGGGTAAGCAACTTTGATTCTGCGAGTTCATGTCTTAAGTATCCCCTGTTATGGCTTTTTTGATTCCTTATGTCATTTGTGTGGCAGGATGTATTTGAAGGTGCGTGTGACTGCGCCAGAGAATGGAATGGTTTATTATGGGAAGATTCAAAGAAGATGCATTTGGTGGTCAAGTCTGAGGTTCATACTTACGTACGAGATTTTTTACGCCGCCAAAAGTAG

Protein sequence

>MS.gene39443.t1

MPEVRIIAKNFMDMVASMPAIKLDKLYENAFICEAILRSLPPLAKKYVLQLLHIDGPVPAKLLAEWVLPDGLSKHNVAIDRLVQLRVFVEALDNDSKIGKTYKVNSTYQRSLQKLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTFNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHLVVKSEVHTYVRDFLRRQK