Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40688.t1 | XP_013462064.1 | 96.9 | 321 | 10 | 0 | 11 | 331 | 199 | 519 | 1.60E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40688.t1 | Q94AA4 | 80.5 | 282 | 52 | 2 | 11 | 292 | 198 | 476 | 2.4e-128 | 459.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40688.t1 | A0A072V223 | 96.9 | 321 | 10 | 0 | 11 | 331 | 199 | 519 | 1.1e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene40688 | -0.827509 | 1.50E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene40688 | -0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene050165 | MS.gene40688 | -0.80642 | 8.30E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene40688 | -0.822574 | 2.20E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene40688 | -0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene40688 | -0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene40688 | -0.8077 | 4.45E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene40688 | -0.842097 | 3.18E-58 | -1.69E-46 |
| MS.gene053108 | MS.gene40688 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene40688 | 0.853981 | 1.67E-61 | -1.69E-46 |
| MS.gene05470 | MS.gene40688 | -0.81826 | 2.15E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene40688 | -0.81284 | 3.46E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene40688 | -0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene40688 | -0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene056583 | MS.gene40688 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene056618 | MS.gene40688 | 0.821035 | 5.00E-53 | -1.69E-46 |
| MS.gene057271 | MS.gene40688 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene40688 | -0.802548 | 5.32E-49 | -1.69E-46 |
| MS.gene05912 | MS.gene40688 | -0.822126 | 2.80E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene40688 | -0.801706 | 7.93E-49 | -1.69E-46 |
| MS.gene060602 | MS.gene40688 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene40688 | -0.815777 | 7.77E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene40688 | -0.810497 | 1.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40688.t1 | MTR_3g110395 | 97.508 | 321 | 8 | 0 | 11 | 331 | 199 | 519 | 0.0 | 649 |
| MS.gene40688.t1 | MTR_6g090130 | 80.866 | 277 | 53 | 0 | 11 | 287 | 195 | 471 | 2.10e-167 | 476 |
| MS.gene40688.t1 | MTR_8g102190 | 82.625 | 259 | 44 | 1 | 12 | 269 | 199 | 457 | 1.09e-160 | 457 |
| MS.gene40688.t1 | MTR_2g100710 | 74.349 | 269 | 67 | 2 | 11 | 278 | 198 | 465 | 1.70e-143 | 413 |
| MS.gene40688.t1 | MTR_1g090300 | 72.075 | 265 | 73 | 1 | 12 | 276 | 266 | 529 | 1.06e-141 | 412 |
| MS.gene40688.t1 | MTR_4g134290 | 56.809 | 257 | 110 | 1 | 12 | 267 | 203 | 459 | 1.43e-105 | 317 |
| MS.gene40688.t1 | MTR_8g102190 | 81.714 | 175 | 31 | 1 | 12 | 185 | 199 | 373 | 1.28e-101 | 303 |
| MS.gene40688.t1 | MTR_8g102190 | 83.648 | 159 | 25 | 1 | 12 | 169 | 199 | 357 | 2.23e-93 | 283 |
| MS.gene40688.t1 | MTR_8g069040 | 52.549 | 255 | 116 | 2 | 12 | 266 | 280 | 529 | 9.53e-85 | 265 |
| MS.gene40688.t1 | MTR_5g032570 | 50.980 | 255 | 120 | 2 | 12 | 266 | 284 | 533 | 1.38e-83 | 262 |
| MS.gene40688.t1 | MTR_2g100710 | 76.875 | 160 | 36 | 1 | 11 | 169 | 198 | 357 | 3.66e-82 | 254 |
| MS.gene40688.t1 | MTR_2g100670 | 59.341 | 91 | 22 | 2 | 80 | 169 | 31 | 107 | 1.45e-25 | 106 |
| MS.gene40688.t1 | MTR_4g062050 | 64.815 | 54 | 19 | 0 | 168 | 221 | 8 | 61 | 5.40e-18 | 80.9 |
| MS.gene40688.t1 | MTR_4g079180 | 76.316 | 38 | 9 | 0 | 184 | 221 | 56 | 93 | 7.06e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40688.t1 | AT4G26270 | 80.496 | 282 | 52 | 2 | 11 | 292 | 198 | 476 | 6.80e-169 | 479 |
| MS.gene40688.t1 | AT4G32840 | 85.214 | 257 | 35 | 1 | 12 | 268 | 200 | 453 | 2.57e-163 | 464 |
| MS.gene40688.t1 | AT4G29220 | 84.231 | 260 | 38 | 2 | 12 | 270 | 200 | 457 | 1.84e-161 | 459 |
| MS.gene40688.t1 | AT5G56630 | 79.710 | 276 | 53 | 3 | 11 | 286 | 198 | 470 | 2.70e-159 | 454 |
| MS.gene40688.t1 | AT5G61580 | 77.255 | 255 | 58 | 0 | 12 | 266 | 250 | 504 | 5.59e-147 | 425 |
| MS.gene40688.t1 | AT5G61580 | 77.255 | 255 | 57 | 1 | 12 | 266 | 250 | 503 | 4.26e-145 | 420 |
| MS.gene40688.t1 | AT5G47810 | 58.431 | 255 | 105 | 1 | 12 | 265 | 184 | 438 | 9.26e-107 | 319 |
| MS.gene40688.t1 | AT2G22480 | 53.725 | 255 | 113 | 2 | 12 | 266 | 288 | 537 | 4.20e-89 | 277 |
Find 72 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCAAGATGTTGGTTTA+TGG | 0.202635 | 3.3:+91396497 | MS.gene40688:CDS |
| TTCAACATGTGCTGCATTAA+TGG | 0.206437 | 3.3:-91396027 | None:intergenic |
| TAAGCATTCTGAGCATATTT+TGG | 0.222566 | 3.3:+91395740 | MS.gene40688:CDS |
| CTTTATTTGATGAACATCTT+TGG | 0.232102 | 3.3:-91397795 | None:intergenic |
| TTTATTTGATGAACATCTTT+GGG | 0.300163 | 3.3:-91397794 | None:intergenic |
| TACCGGGATGTCATTATCTA+TGG | 0.300219 | 3.3:-91395823 | None:intergenic |
| TGTTTCCAGAAGCATCCTTC+TGG | 0.336049 | 3.3:-91396471 | None:intergenic |
| CTTGCTCAGAGTGCAGTTCA+TGG | 0.350658 | 3.3:+91397299 | MS.gene40688:CDS |
| ACCCTTCCCTTCAAGGTAGA+AGG | 0.353106 | 3.3:-91396338 | None:intergenic |
| GGTGCAATGGCTGGGTATAC+TGG | 0.356523 | 3.3:+91397320 | MS.gene40688:CDS |
| CACAACGTTGTTCATCTTCT+CGG | 0.359054 | 3.3:-91397711 | None:intergenic |
| GCCATTGTTCTTAAATATAT+AGG | 0.384279 | 3.3:+91397122 | MS.gene40688:CDS |
| AAAGTCCACCCTTCCCTTCA+AGG | 0.386654 | 3.3:-91396345 | None:intergenic |
| ATCTAGTAACTTACGTTGAA+TGG | 0.388848 | 3.3:-91397383 | None:intergenic |
| TCCCTTCTAACAACTGAGTC+AGG | 0.397166 | 3.3:-91397832 | None:intergenic |
| TCCCTGACTCAGTTGTTAGA+AGG | 0.398852 | 3.3:+91397830 | MS.gene40688:CDS |
| CATTGGTGTTGTAAAGCTAA+TGG | 0.401351 | 3.3:+91396070 | MS.gene40688:CDS |
| TAGGTTATCGACAGGTCCTT+TGG | 0.411323 | 3.3:+91395972 | MS.gene40688:intron |
| ATTCCCACTCAGTTGATAGA+AGG | 0.412182 | 3.3:+91397899 | MS.gene40688:CDS |
| GCAGTTCATGGTGCAATGGC+TGG | 0.433123 | 3.3:+91397311 | MS.gene40688:CDS |
| GGGTATACTGGATTCACTGC+TGG | 0.434313 | 3.3:+91397332 | MS.gene40688:CDS |
| GAGTCACCCTTCTACCTTGA+AGG | 0.442197 | 3.3:+91396331 | MS.gene40688:CDS |
| CAGATCCAACTTACATGATC+CGG | 0.445131 | 3.3:+91397234 | MS.gene40688:intron |
| ATGGACCAGAAGGATGCTTC+TGG | 0.455785 | 3.3:+91396466 | MS.gene40688:CDS |
| TTTATGAATTTATTACGAAA+AGG | 0.468687 | 3.3:+91396365 | MS.gene40688:CDS |
| AACAAGCTACTTCAAGATGT+TGG | 0.473799 | 3.3:+91396490 | MS.gene40688:CDS |
| TTCACTGCTGGACTTGTGAA+TGG | 0.485445 | 3.3:+91397344 | MS.gene40688:CDS |
| GCTGAAAGAAAGTGGACATA+TGG | 0.488751 | 3.3:+91396387 | MS.gene40688:CDS |
| GGTCTGAAAGTAGCAATTGC+TGG | 0.489039 | 3.3:+91395789 | MS.gene40688:CDS |
| TCAAGGTAGAAGGGTGACTC+TGG | 0.491308 | 3.3:-91396328 | None:intergenic |
| AAGCTAATGGGTCGTTATAG+TGG | 0.497189 | 3.3:+91396083 | MS.gene40688:CDS |
| ATGCATTGCTTGGAATTGCC+CGG | 0.523008 | 3.3:-91397253 | None:intergenic |
| ATTGGTGTTGTAAAGCTAAT+GGG | 0.524626 | 3.3:+91396071 | MS.gene40688:CDS |
| TGTTTGATTAGGTTATCGAC+AGG | 0.526843 | 3.3:+91395964 | MS.gene40688:intron |
| ACACTGTCTGATGCATTGCT+TGG | 0.537565 | 3.3:-91397263 | None:intergenic |
| ATGGATATCTCATAAGATCA+AGG | 0.539762 | 3.3:+91396516 | MS.gene40688:CDS |
| CCCTGACTCAGTTGTTAGAA+GGG | 0.543143 | 3.3:+91397831 | MS.gene40688:CDS |
| ACCCTTCTACCTTGAAGGGA+AGG | 0.543653 | 3.3:+91396336 | MS.gene40688:CDS |
| CCCTTCCCTTCAAGGTAGAA+GGG | 0.551850 | 3.3:-91396337 | None:intergenic |
| ATTGCCCGGATCATGTAAGT+TGG | 0.554329 | 3.3:-91397239 | None:intergenic |
| ACGAAAAGGCTGAAAGAAAG+TGG | 0.554398 | 3.3:+91396379 | MS.gene40688:CDS |
| TTCCCACTCAGTTGATAGAA+GGG | 0.555630 | 3.3:+91397900 | MS.gene40688:CDS |
| ATAGTTATAGCTGAGGGAGC+AGG | 0.560671 | 3.3:+91396412 | MS.gene40688:CDS |
| AGATCCAACTTACATGATCC+GGG | 0.560914 | 3.3:+91397235 | MS.gene40688:intron |
| AACCATAGATAATGACATCC+CGG | 0.563261 | 3.3:+91395821 | MS.gene40688:CDS |
| CATGCAAGACATGGACCAGA+AGG | 0.565078 | 3.3:+91396456 | MS.gene40688:CDS |
| TACAGAAAGCATGCAAGACA+TGG | 0.580338 | 3.3:+91396447 | MS.gene40688:CDS |
| AGTCACCCTTCTACCTTGAA+GGG | 0.585876 | 3.3:+91396332 | MS.gene40688:CDS |
| GAAGGGAGCAATTGCAATGG+TGG | 0.587091 | 3.3:+91397848 | MS.gene40688:CDS |
| CAGTTCATGGTGCAATGGCT+GGG | 0.590436 | 3.3:+91397312 | MS.gene40688:CDS |
| ACCTATATATTTAAGAACAA+TGG | 0.594094 | 3.3:-91397123 | None:intergenic |
| CCCTTCTACCTTGAAGGGAA+GGG | 0.594930 | 3.3:+91396337 | MS.gene40688:CDS |
| TTCTACCTTGAAGGGAAGGG+TGG | 0.595567 | 3.3:+91396340 | MS.gene40688:CDS |
| TTGTGATTACTGACAGAATG+TGG | 0.596485 | 3.3:+91397729 | MS.gene40688:CDS |
| TCCCCTTCTATCAACTGAGT+GGG | 0.604482 | 3.3:-91397902 | None:intergenic |
| GAAAGTGTTGAGAATGGCAT+TGG | 0.625093 | 3.3:+91396053 | MS.gene40688:CDS |
| GAGTGCAGTTCATGGTGCAA+TGG | 0.628896 | 3.3:+91397307 | MS.gene40688:CDS |
| ATGGTCATAGTTATAGCTGA+GGG | 0.632087 | 3.3:+91396406 | MS.gene40688:CDS |
| TACTCTTGCTAGTAGAGATG+TGG | 0.632402 | 3.3:+91396291 | MS.gene40688:CDS |
| CCCTTCTAACAACTGAGTCA+GGG | 0.632890 | 3.3:-91397831 | None:intergenic |
| AACTGCGGTATCAAAACCAA+AGG | 0.633694 | 3.3:-91395988 | None:intergenic |
| GTCCCCTTCTATCAACTGAG+TGG | 0.636892 | 3.3:-91397903 | None:intergenic |
| TATGGTCATAGTTATAGCTG+AGG | 0.638112 | 3.3:+91396405 | MS.gene40688:CDS |
| GAAGCTGAAAGTGTTGAGAA+TGG | 0.642124 | 3.3:+91396047 | MS.gene40688:CDS |
| TCCCACTCAGTTGATAGAAG+GGG | 0.643504 | 3.3:+91397901 | MS.gene40688:CDS |
| TTATCATACAGGAAGTTAGA+CGG | 0.646291 | 3.3:+91395763 | MS.gene40688:CDS |
| TTAGAAGGGAGCAATTGCAA+TGG | 0.676659 | 3.3:+91397845 | MS.gene40688:CDS |
| TGCAACTGTCACTGTCAGCG+AGG | 0.681592 | 3.3:-91397955 | None:intergenic |
| ATACAGGAAGTTAGACGGCG+AGG | 0.691856 | 3.3:+91395768 | MS.gene40688:CDS |
| ACGTTGAGCCTCCTCAACTG+CGG | 0.700198 | 3.3:-91396003 | None:intergenic |
| TGTGATTACTGACAGAATGT+GGG | 0.717274 | 3.3:+91397730 | MS.gene40688:CDS |
| CAATTGCAATGGTGGCAGTG+AGG | 0.727536 | 3.3:+91397856 | MS.gene40688:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTAGAAAAATAAAAAAT+TGG | - | chr3.3:91397635-91397654 | None:intergenic | 10.0% |
| !! | GTAAATAAATATAAAAAAAC+TGG | - | chr3.3:91396979-91396998 | None:intergenic | 10.0% |
| !! | AAGTTGAATGTTTATTAAAA+GGG | - | chr3.3:91397065-91397084 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAGATGTAGAA+TGG | + | chr3.3:91396775-91396794 | MS.gene40688:intron | 15.0% |
| !! | TAAAAAAACTAATCCAAATA+GGG | - | chr3.3:91396738-91396757 | None:intergenic | 15.0% |
| !! | TTTATGAATTTATTACGAAA+AGG | + | chr3.3:91396365-91396384 | MS.gene40688:CDS | 15.0% |
| !!! | TTATGCTATATAATTTGTTT+AGG | - | chr3.3:91396614-91396633 | None:intergenic | 15.0% |
| !! | AAAAAAACTAATCCAAATAG+GGG | - | chr3.3:91396737-91396756 | None:intergenic | 20.0% |
| !! | ACCTATATATTTAAGAACAA+TGG | - | chr3.3:91397126-91397145 | None:intergenic | 20.0% |
| !! | ATAAAAAATTGGATGCAAAT+AGG | - | chr3.3:91397624-91397643 | None:intergenic | 20.0% |
| !! | CTAAAAAAACTAATCCAAAT+AGG | - | chr3.3:91396739-91396758 | None:intergenic | 20.0% |
| !! | TGTTATTGATATATATCAAG+TGG | + | chr3.3:91397458-91397477 | MS.gene40688:intron | 20.0% |
| !! | TTTATTTGATGAACATCTTT+GGG | - | chr3.3:91397797-91397816 | None:intergenic | 20.0% |
| !!! | AATATTTTAGTCATTACGTT+TGG | - | chr3.3:91396185-91396204 | None:intergenic | 20.0% |
| !!! | CAAGTTGAATGTTTATTAAA+AGG | - | chr3.3:91397066-91397085 | None:intergenic | 20.0% |
| !!! | TATATAATTTGTTTAGGAAG+AGG | - | chr3.3:91396608-91396627 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCGTGTTGTAA+TGG | + | chr3.3:91396234-91396253 | MS.gene40688:intron | 20.0% |
| ! | AAAACGAACTTGATTTATAC+AGG | - | chr3.3:91397558-91397577 | None:intergenic | 25.0% |
| ! | ATACAACGAATAGATCAAAA+TGG | - | chr3.3:91397173-91397192 | None:intergenic | 25.0% |
| ! | CACAAAAAATACTACATACA+TGG | + | chr3.3:91396919-91396938 | MS.gene40688:intron | 25.0% |
| ! | GCCATTGTTCTTAAATATAT+AGG | + | chr3.3:91397122-91397141 | MS.gene40688:CDS | 25.0% |
| !! | ATGTCATTATCTATGGTTTT+TGG | - | chr3.3:91395819-91395838 | None:intergenic | 25.0% |
| !! | CTTTATTTGATGAACATCTT+TGG | - | chr3.3:91397798-91397817 | None:intergenic | 25.0% |
| !! | TATTTAGTATCTTCTGAAAG+TGG | - | chr3.3:91396879-91396898 | None:intergenic | 25.0% |
| !!! | AGTATTTTTTGTGCATTGAA+TGG | - | chr3.3:91396912-91396931 | None:intergenic | 25.0% |
| !!! | GATTAGTTTTTTTAGCAGAT+GGG | + | chr3.3:91396744-91396763 | MS.gene40688:intron | 25.0% |
| AATTGACTGTTCTTGATAGA+TGG | - | chr3.3:91397027-91397046 | None:intergenic | 30.0% | |
| ATCTAGTAACTTACGTTGAA+TGG | - | chr3.3:91397386-91397405 | None:intergenic | 30.0% | |
| ATGCAACTATGATAATCTAC+AGG | - | chr3.3:91396949-91396968 | None:intergenic | 30.0% | |
| ATGGATATCTCATAAGATCA+AGG | + | chr3.3:91396516-91396535 | MS.gene40688:CDS | 30.0% | |
| TATGGCTAGATTTCTTAACT+GGG | + | chr3.3:91397203-91397222 | MS.gene40688:intron | 30.0% | |
| TGCAACTATGATAATCTACA+GGG | - | chr3.3:91396948-91396967 | None:intergenic | 30.0% | |
| TGCACAATAACAAATGCTTA+AGG | + | chr3.3:91397596-91397615 | MS.gene40688:intron | 30.0% | |
| TTAACTAGTTAACCTGTAGT+TGG | - | chr3.3:91396688-91396707 | None:intergenic | 30.0% | |
| TTATCATACAGGAAGTTAGA+CGG | + | chr3.3:91395763-91395782 | MS.gene40688:CDS | 30.0% | |
| ! | CGTTTTTCTTCTGTTTGATT+AGG | + | chr3.3:91395953-91395972 | MS.gene40688:intron | 30.0% |
| ! | GAAATAGGATCATTTTGCAA+AGG | + | chr3.3:91397088-91397107 | MS.gene40688:intron | 30.0% |
| ! | TAACCTTGTCATTTGAGTTA+CGG | + | chr3.3:91395885-91395904 | MS.gene40688:intron | 30.0% |
| ! | TAAGCATTCTGAGCATATTT+TGG | + | chr3.3:91395740-91395759 | MS.gene40688:CDS | 30.0% |
| ! | TTTTAGTCATTACGTTTGGA+TGG | - | chr3.3:91396181-91396200 | None:intergenic | 30.0% |
| ! | TTTTGCAAAGGAGAATAAGA+TGG | + | chr3.3:91397100-91397119 | MS.gene40688:CDS | 30.0% |
| !! | AACATTCAACTTGCTGAAAT+AGG | + | chr3.3:91397073-91397092 | MS.gene40688:intron | 30.0% |
| !! | ATTGGTGTTGTAAAGCTAAT+GGG | + | chr3.3:91396071-91396090 | MS.gene40688:CDS | 30.0% |
| !! | TACTTCAAGATGTTGGTTTA+TGG | + | chr3.3:91396497-91396516 | MS.gene40688:CDS | 30.0% |
| !!! | GCATATTTTGGTTATCATAC+AGG | + | chr3.3:91395752-91395771 | MS.gene40688:CDS | 30.0% |
| !!! | GGATTAGTTTTTTTAGCAGA+TGG | + | chr3.3:91396743-91396762 | MS.gene40688:intron | 30.0% |
| AAATGACAAGGTTAGAGTTC+TGG | - | chr3.3:91395879-91395898 | None:intergenic | 35.0% | |
| AACAAGCTACTTCAAGATGT+TGG | + | chr3.3:91396490-91396509 | MS.gene40688:CDS | 35.0% | |
| AACCATAGATAATGACATCC+CGG | + | chr3.3:91395821-91395840 | MS.gene40688:CDS | 35.0% | |
| ATATGCTACTGTTGTTGAGA+TGG | + | chr3.3:91397520-91397539 | MS.gene40688:intron | 35.0% | |
| ATGGTCATAGTTATAGCTGA+GGG | + | chr3.3:91396406-91396425 | MS.gene40688:CDS | 35.0% | |
| CGAATAGATCAAAATGGAAG+AGG | - | chr3.3:91397167-91397186 | None:intergenic | 35.0% | |
| CGTTGTATCTTAGACTACTA+TGG | + | chr3.3:91397185-91397204 | MS.gene40688:intron | 35.0% | |
| CTATGGCTAGATTTCTTAAC+TGG | + | chr3.3:91397202-91397221 | MS.gene40688:intron | 35.0% | |
| GTTGTTTGTGTATATCTACG+AGG | + | chr3.3:91396635-91396654 | MS.gene40688:intron | 35.0% | |
| TAACCGTAACTCAAATGACA+AGG | - | chr3.3:91395891-91395910 | None:intergenic | 35.0% | |
| TACGAGGAATTAAGAACTCA+AGG | + | chr3.3:91396651-91396670 | MS.gene40688:intron | 35.0% | |
| TAGGGTTCAATTAAACTCAG+AGG | - | chr3.3:91396152-91396171 | None:intergenic | 35.0% | |
| TATGGTCATAGTTATAGCTG+AGG | + | chr3.3:91396405-91396424 | MS.gene40688:CDS | 35.0% | |
| TCAGATTATAAAACTGTGCG+AGG | - | chr3.3:91397411-91397430 | None:intergenic | 35.0% | |
| TGTGATTACTGACAGAATGT+GGG | + | chr3.3:91397730-91397749 | MS.gene40688:CDS | 35.0% | |
| TGTTTGATTAGGTTATCGAC+AGG | + | chr3.3:91395964-91395983 | MS.gene40688:intron | 35.0% | |
| TTCAACATGTGCTGCATTAA+TGG | - | chr3.3:91396030-91396049 | None:intergenic | 35.0% | |
| TTGTGATTACTGACAGAATG+TGG | + | chr3.3:91397729-91397748 | MS.gene40688:CDS | 35.0% | |
| ! | TCTTTGGGTTTCAAAAAGCT+TGG | - | chr3.3:91397782-91397801 | None:intergenic | 35.0% |
| !! | CATTGGTGTTGTAAAGCTAA+TGG | + | chr3.3:91396070-91396089 | MS.gene40688:CDS | 35.0% |
| !! | GTAATGGATACTATAACTGC+AGG | + | chr3.3:91396250-91396269 | MS.gene40688:intron | 35.0% |
| AACTGCGGTATCAAAACCAA+AGG | - | chr3.3:91395991-91396010 | None:intergenic | 40.0% | |
| ACATAGAGATTGAGCATACC+GGG | - | chr3.3:91395842-91395861 | None:intergenic | 40.0% | |
| ACGAAAAGGCTGAAAGAAAG+TGG | + | chr3.3:91396379-91396398 | MS.gene40688:CDS | 40.0% | |
| AGATCCAACTTACATGATCC+GGG | + | chr3.3:91397235-91397254 | MS.gene40688:intron | 40.0% | |
| CACAACGTTGTTCATCTTCT+CGG | - | chr3.3:91397714-91397733 | None:intergenic | 40.0% | |
| CAGATCCAACTTACATGATC+CGG | + | chr3.3:91397234-91397253 | MS.gene40688:intron | 40.0% | |
| GACATAGAGATTGAGCATAC+CGG | - | chr3.3:91395843-91395862 | None:intergenic | 40.0% | |
| GAGGAATTAAGAACTCAAGG+AGG | + | chr3.3:91396654-91396673 | MS.gene40688:intron | 40.0% | |
| GATTCATTGATGCCCCTATT+TGG | + | chr3.3:91396722-91396741 | MS.gene40688:intron | 40.0% | |
| GCTGAAAGAAAGTGGACATA+TGG | + | chr3.3:91396387-91396406 | MS.gene40688:CDS | 40.0% | |
| TACCGGGATGTCATTATCTA+TGG | - | chr3.3:91395826-91395845 | None:intergenic | 40.0% | |
| TACGGTTACATCTGATGAGT+CGG | + | chr3.3:91395903-91395922 | MS.gene40688:intron | 40.0% | |
| TACTCTTGCTAGTAGAGATG+TGG | + | chr3.3:91396291-91396310 | MS.gene40688:CDS | 40.0% | |
| TAGTCATTACGTTTGGATGG+AGG | - | chr3.3:91396178-91396197 | None:intergenic | 40.0% | |
| TTAGAAGGGAGCAATTGCAA+TGG | + | chr3.3:91397845-91397864 | MS.gene40688:CDS | 40.0% | |
| ! | AAGCTAATGGGTCGTTATAG+TGG | + | chr3.3:91396083-91396102 | MS.gene40688:CDS | 40.0% |
| ! | GTATCTTCTGAAAGTGGAGA+AGG | - | chr3.3:91396873-91396892 | None:intergenic | 40.0% |
| ! | TACAGAAAGCATGCAAGACA+TGG | + | chr3.3:91396447-91396466 | MS.gene40688:CDS | 40.0% |
| !! | ATTCCCACTCAGTTGATAGA+AGG | + | chr3.3:91397899-91397918 | MS.gene40688:CDS | 40.0% |
| !! | GAAAGTGTTGAGAATGGCAT+TGG | + | chr3.3:91396053-91396072 | MS.gene40688:CDS | 40.0% |
| !! | GAAGCTGAAAGTGTTGAGAA+TGG | + | chr3.3:91396047-91396066 | MS.gene40688:CDS | 40.0% |
| !! | TTCCCACTCAGTTGATAGAA+GGG | + | chr3.3:91397900-91397919 | MS.gene40688:CDS | 40.0% |
| ACACTGTCTGATGCATTGCT+TGG | - | chr3.3:91397266-91397285 | None:intergenic | 45.0% | |
| ACGTTTGGATGGAGGAAGTA+GGG | - | chr3.3:91396170-91396189 | None:intergenic | 45.0% | |
| AGTCACCCTTCTACCTTGAA+GGG | + | chr3.3:91396332-91396351 | MS.gene40688:CDS | 45.0% | |
| ATAGTTATAGCTGAGGGAGC+AGG | + | chr3.3:91396412-91396431 | MS.gene40688:CDS | 45.0% | |
| ATGCATTGCTTGGAATTGCC+CGG | - | chr3.3:91397256-91397275 | None:intergenic | 45.0% | |
| ATTGCCCGGATCATGTAAGT+TGG | - | chr3.3:91397242-91397261 | None:intergenic | 45.0% | |
| CATCTTCTCGGTGATTCTCT+GGG | - | chr3.3:91397702-91397721 | None:intergenic | 45.0% | |
| CCCTGACTCAGTTGTTAGAA+GGG | + | chr3.3:91397831-91397850 | MS.gene40688:CDS | 45.0% | |
| CCCTTCTAACAACTGAGTCA+GGG | - | chr3.3:91397834-91397853 | None:intergenic | 45.0% | |
| GGTCTGAAAGTAGCAATTGC+TGG | + | chr3.3:91395789-91395808 | MS.gene40688:CDS | 45.0% | |
| GTGCATTGAATGGTATGCAG+AGG | - | chr3.3:91396902-91396921 | None:intergenic | 45.0% | |
| TACGTTTGGATGGAGGAAGT+AGG | - | chr3.3:91396171-91396190 | None:intergenic | 45.0% | |
| TAGGTTATCGACAGGTCCTT+TGG | + | chr3.3:91395972-91395991 | MS.gene40688:intron | 45.0% | |
| TCATCTTCTCGGTGATTCTC+TGG | - | chr3.3:91397703-91397722 | None:intergenic | 45.0% | |
| TCCCCTTCTATCAACTGAGT+GGG | - | chr3.3:91397905-91397924 | None:intergenic | 45.0% | |
| TCCCTGACTCAGTTGTTAGA+AGG | + | chr3.3:91397830-91397849 | MS.gene40688:CDS | 45.0% | |
| TCCCTTCTAACAACTGAGTC+AGG | - | chr3.3:91397835-91397854 | None:intergenic | 45.0% | |
| TGGGTTTCAAAAAGCTTGGC+TGG | - | chr3.3:91397778-91397797 | None:intergenic | 45.0% | |
| TTCACTGCTGGACTTGTGAA+TGG | + | chr3.3:91397344-91397363 | MS.gene40688:CDS | 45.0% | |
| ! | CGGATCATGTAAGTTGGATC+TGG | - | chr3.3:91397236-91397255 | None:intergenic | 45.0% |
| ! | TTTTGATACCGCAGTTGAGG+AGG | + | chr3.3:91395995-91396014 | MS.gene40688:CDS | 45.0% |
| !! | TCCCACTCAGTTGATAGAAG+GGG | + | chr3.3:91397901-91397920 | MS.gene40688:CDS | 45.0% |
| !! | TGTTTCCAGAAGCATCCTTC+TGG | - | chr3.3:91396474-91396493 | None:intergenic | 45.0% |
| !!! | TGGTTTTGATACCGCAGTTG+AGG | + | chr3.3:91395992-91396011 | MS.gene40688:CDS | 45.0% |
| AAAGTCCACCCTTCCCTTCA+AGG | - | chr3.3:91396348-91396367 | None:intergenic | 50.0% | |
| ACCCTTCCCTTCAAGGTAGA+AGG | - | chr3.3:91396341-91396360 | None:intergenic | 50.0% | |
| ACCCTTCTACCTTGAAGGGA+AGG | + | chr3.3:91396336-91396355 | MS.gene40688:CDS | 50.0% | |
| ATACAGGAAGTTAGACGGCG+AGG | + | chr3.3:91395768-91395787 | MS.gene40688:CDS | 50.0% | |
| ATGGACCAGAAGGATGCTTC+TGG | + | chr3.3:91396466-91396485 | MS.gene40688:CDS | 50.0% | |
| CAATTGCAATGGTGGCAGTG+AGG | + | chr3.3:91397856-91397875 | MS.gene40688:CDS | 50.0% | |
| CAGTTCATGGTGCAATGGCT+GGG | + | chr3.3:91397312-91397331 | MS.gene40688:CDS | 50.0% | |
| CATGCAAGACATGGACCAGA+AGG | + | chr3.3:91396456-91396475 | MS.gene40688:CDS | 50.0% | |
| CCCTTCCCTTCAAGGTAGAA+GGG | - | chr3.3:91396340-91396359 | None:intergenic | 50.0% | |
| CCCTTCTACCTTGAAGGGAA+GGG | + | chr3.3:91396337-91396356 | MS.gene40688:CDS | 50.0% | |
| CTTGCTCAGAGTGCAGTTCA+TGG | + | chr3.3:91397299-91397318 | MS.gene40688:CDS | 50.0% | |
| GAAGGGAGCAATTGCAATGG+TGG | + | chr3.3:91397848-91397867 | MS.gene40688:CDS | 50.0% | |
| GAGTCACCCTTCTACCTTGA+AGG | + | chr3.3:91396331-91396350 | MS.gene40688:CDS | 50.0% | |
| GAGTGCAGTTCATGGTGCAA+TGG | + | chr3.3:91397307-91397326 | MS.gene40688:CDS | 50.0% | |
| GGGTATACTGGATTCACTGC+TGG | + | chr3.3:91397332-91397351 | MS.gene40688:CDS | 50.0% | |
| GTCCCCTTCTATCAACTGAG+TGG | - | chr3.3:91397906-91397925 | None:intergenic | 50.0% | |
| TCAAGGTAGAAGGGTGACTC+TGG | - | chr3.3:91396331-91396350 | None:intergenic | 50.0% | |
| TTCTACCTTGAAGGGAAGGG+TGG | + | chr3.3:91396340-91396359 | MS.gene40688:CDS | 50.0% | |
| ACGTTGAGCCTCCTCAACTG+CGG | - | chr3.3:91396006-91396025 | None:intergenic | 55.0% | |
| GAGGAGCTCTCACCAACTAC+AGG | + | chr3.3:91396673-91396692 | MS.gene40688:intron | 55.0% | |
| GCAGTTCATGGTGCAATGGC+TGG | + | chr3.3:91397311-91397330 | MS.gene40688:CDS | 55.0% | |
| GGTGCAATGGCTGGGTATAC+TGG | + | chr3.3:91397320-91397339 | MS.gene40688:CDS | 55.0% | |
| TGCAACTGTCACTGTCAGCG+AGG | - | chr3.3:91397958-91397977 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91395732 | 91397988 | 91395732 | ID=MS.gene40688 |
| chr3.3 | mRNA | 91395732 | 91397988 | 91395732 | ID=MS.gene40688.t1;Parent=MS.gene40688 |
| chr3.3 | exon | 91395732 | 91395842 | 91395732 | ID=MS.gene40688.t1.exon1;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91395732 | 91395842 | 91395732 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| chr3.3 | exon | 91395975 | 91396104 | 91395975 | ID=MS.gene40688.t1.exon2;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91395975 | 91396104 | 91395975 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| chr3.3 | exon | 91396272 | 91396537 | 91396272 | ID=MS.gene40688.t1.exon3;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91396272 | 91396537 | 91396272 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| chr3.3 | exon | 91397095 | 91397143 | 91397095 | ID=MS.gene40688.t1.exon4;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91397095 | 91397143 | 91397095 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| chr3.3 | exon | 91397237 | 91397391 | 91397237 | ID=MS.gene40688.t1.exon5;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91397237 | 91397391 | 91397237 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| chr3.3 | exon | 91397704 | 91397988 | 91397704 | ID=MS.gene40688.t1.exon6;Parent=MS.gene40688.t1 |
| chr3.3 | CDS | 91397704 | 91397988 | 91397704 | ID=cds.MS.gene40688.t1;Parent=MS.gene40688.t1 |
| Gene Sequence |
| Protein sequence |
